Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.63003

https://doi.org/10.7554/eLife.63003

Cited by: 17
Author(s): Gang Wu, Yin Yeng Lee, Evelyn M. Gulla, Andrew Potter, Joseph A. Kitzmiller, Marc D. Ruben, Nathan Salomonis, JA Whitsett, Lauren J. Francey, John B. Hogenesch, Smith Dl
Published: about 3 years ago

Software Mentions 12

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GOSemSim
GO-terms Semantic Similarity Measures
Papers that mentioned: 118
cran: HiveR
2D and 3D Hive Plots for R
Papers that mentioned: 5
cran: homologene
Quick Access to Homologene and Gene Annotation Updates
Papers that mentioned: 9
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: AltAnalyze
User Friendly Application for Comprehensive Transcriptome Analysis
Papers that mentioned: 102
pypi: and
A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 418
pypi: CellPhoneDB
Inferring cell-cell communication.
Papers that mentioned: 89
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555