10.1371/journal.pgen.0030096

Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models
Cited by: 169
Author(s): Manway Liu, Arthur Liberzon, Sek Won Kong, Weil Lai, Peter J. Park, Isaac S. Kohane, Simon Kasif
Software Mentions: 2
Published: about 19 years ago

10.3389/fpsyg.2019.00411

Agency and Bandura’s Model of Triadic Reciprocal Causation: An Exploratory Mobility Study Among Metrorail Commuters in the Western Cape, South Africa
Cited by: 14
Author(s): Zinette Bergman, Manfred Max Bergman, Andrew Thatcher
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2164-14-436

Deciphering the response of Mycobacterium smegmatis to nitrogen stress using bipartite active modules
Cited by: 15
Author(s): Katrina Williams, William A Bryant, Victoria A Jenkins, Geraint Barton, Adam A. Witney, John W. Pinney, Brian D. Robertson
Software Mentions: 2
Published: about 13 years ago

10.3389/fpsyg.2018.01311

A Growth-Curve Analysis of the Effects of Future-Thought Priming on Insight and Analytical Problem-Solving
Cited by: 4
Author(s): Truelove-Hill Monica, Brian Erickson, Julia Anderson, Mary Kossoyan, John Kounios
Software Mentions: 2
Published: about 8 years ago

10.3389/fpsyg.2017.01748

EEG Differentiation Analysis and Stimulus Set Meaningfulness
Cited by: 14
Author(s): Armand Mensen, William Marshall, Giulio Tononi
Software Mentions: 2
Published: almost 9 years ago

10.1155/2020/4045204

Global Analysis of Alternative Splicing Difference in Peripheral Immune Organs between Tongcheng Pigs and Large White Pigs Artificially Infected with PRRSV <i>In Vivo</i>
Cited by: 5
Author(s): Yu Zhang, Liyao Xue, Xu Hang, Wan Liang, Qingqing Wu, Qingde Zhang, Xiang Zhou, Bang Liu
Software Mentions: 2
Published: over 6 years ago

10.1186/s12935-021-01938-4

NEIL3 may act as a potential prognostic biomarker for lung adenocarcinoma
Cited by: 14
Author(s): Chun‐Mei Zhao, Jian Liu, Haomiao Zhou, Qian Xin, Hui Sun, Xuewen Chen, Miaosen Zheng, Tingting Bian, Lei Liu, Yifei Liu, Jianguo Zhang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1003617

Bacterial Adaptation through Loss of Function
Cited by: 192
Author(s): Alison K. Hottes, Peter L. Freddolino, Anupama Khare, Zachary N. Donnell, Julia Liu, Saeed Tavazoie
Software Mentions: 2
Published: about 13 years ago

10.1002/ece3.6762

Genetic diversity, population structure, and gene flow analysis of lowland bamboo [<i>Oxytenanthera abyssinica</i> (A. Rich.) Munro] in Ethiopia
Cited by: 16
Author(s): Oumer Abdie Oumer, Kifle Dagne, Tileye Feyissa, Kassahun Tesfaye, Jayaraman Durai, Muhammad Zeeshan Hyder
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-019-5722-1

Genetic mechanism underlying sexual plasticity and its association with colour patterning in zebrafish (Danio rerio)
Cited by: 14
Author(s): Shahrbanou Hosseini, Ngoc-Thuy Ha, Henner Simianer, Clemens Falker‐Gieske, Bertram Brenig, André Franke, Gabriele Hörstgen‐Schwark, Jens Tetens, Sebastian Herzog, Ahmad Sharifi
Software Mentions: 2
Published: over 7 years ago

10.1042/BSR20204359

Identified a disintegrin and metalloproteinase with thrombospondin motifs 6 serve as a novel gastric cancer prognostic biomarker by bioinformatics analysis
Cited by: 4
Author(s): Yazhen Zhu, Yi Liu, Xiwen Liao, Shuang Luo
Software Mentions: 2
Published: over 5 years ago

10.1155/2014/546347

Multiple Components of the VHL Tumor Suppressor Complex Are Frequently Affected by DNA Copy Number Loss in Pheochromocytoma
Cited by: 7
Author(s): David A. Rowbotham, Katey S.S. Enfield, Victor D. Martínez, Kelsie L. Thu, Emily A. Vucic, Greg L. Stewart, Kevin L. Bennewith, Wan L. Lam
Software Mentions: 2
Published: over 12 years ago

10.1186/s12935-015-0224-y

Inhibition of CDK4/6 as a novel therapeutic option for neuroblastoma
Cited by: 36
Author(s): Ali Rihani, Jo Vandesompele, Frank Speleman, Torn Van Maerken
Software Mentions: 2
Published: about 11 years ago

10.1186/s12935-020-01361-1

Identification of four hub genes as promising biomarkers to evaluate the prognosis of ovarian cancer in silico
Cited by: 16
Author(s): Jingxuan Chen, Yun Cai, Rui Xu, Jiadong Pan, Jie Zhou, Jie Mei
Software Mentions: 2
Published: about 6 years ago

10.3389/fsurg.2021.628848

Efficacy of Prehabilitation Including Exercise on Postoperative Outcomes Following Abdominal Cancer Surgery: A Systematic Review and Meta-Analysis
Cited by: 70
Author(s): Jamie L Waterland, Orla McCourt, Lara Edbrooke, Catherine L Granger, Hilmy Ismail, Bernhard Riedel, Linda Denehy
Software Mentions: 2
Published: over 5 years ago

10.1016/j.coisb.2019.04.002

Footprint-based functional analysis of multiomic data
Cited by: 32
Author(s): Aurélien Dugourd, Julio Sáez-Rodríguez
Software Mentions: 2
Published: about 7 years ago

10.1002/ctm2.187

Tumor microenvironment characterization in head and neck squamous carcinoma reveals distinct genomic alterations and clinical outcomes
Cited by: 2
Author(s): Run Shi, Xuanwen Bao, Jing Sun, Shun Lü, Claus Belka, Minglun Li
Software Mentions: 2
Published: almost 6 years ago

10.1007/s11926-019-0810-4

New Attempts to Define and Clarify Lupus
Cited by: 18
Author(s): Marta E. Alarcón‐Riquelme
Software Mentions: 2
Published: over 7 years ago

10.1186/bcr3689

Parity-related molecular signatures and breast cancer subtypes by estrogen receptor status
Cited by: 35
Author(s): Melissa Rotunno, Xuezheng Sun, Jonine D. Figueroa, Mark E. Sherman, Montserrat García-Closas, Paul S. Meltzer, Tyisha Williams, Sallie S. Schneider, D. Joseph Jerry, Xiaohong R. Yang, Melissa A. Troester
Software Mentions: 2
Published: over 12 years ago

10.1186/s40169-017-0174-1

Post‐zygotic genomic changes in glutamate and dopamine pathway genes may explain discordance of monozygotic twins for schizophrenia
Cited by: 11
Author(s): Christina A Castellani, M.G. Melka, Jane L. Gui, Anthony J. Gallo, Richard O’Reilly, Shiva M. Singh
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pgen.1004768

SCL, LMO1 and Notch1 Reprogram Thymocytes into Self-Renewing Cells
Cited by: 54
Author(s): Bastien Gerby, Cédric Tremblay, Mathieu Tremblay, Shanti Rojas-Sutterlin, Sabine Herblot, Josée Hébert, Guy Sauvageau, Sébastien Lemieux, Éric Lécuyer, Diogo Veiga, Trang Hoang
Software Mentions: 2
Published: over 11 years ago

10.1186/s12859-015-0527-y

Cell-composition effects in the analysis of DNA methylation array data: a mathematical perspective
Cited by: 88
Author(s): E. Andrés Houseman, Karl T. Kelsey, John K. Wiencke, Carmen J. Marsit
Software Mentions: 2
Published: over 11 years ago

10.1002/cam4.386

<i>S</i> ‐adenosylmethionine blocks osteosarcoma cells proliferation and invasion <i>in vitro</i> and tumor metastasis <i>in vivo</i> : therapeutic and diagnostic clinical applications
Cited by: 46
Author(s): Surabhi Parashar, David Cheishvili, Ani Arakelian, Zahid Hussain, Imrana Tanvir, Haseeb Ahmed Khan, Moshe Szyf, Shafaat A. Rabbani
Software Mentions: 2
Published: over 11 years ago

10.1002/ctm2.325

Integrative lncRNA–mRNA co‐expression network analysis identifies novel lncRNA E2F3‐IT1 for rheumatoid arthritis
Cited by: 6
Author(s): Long‐Fei Wu, Xing‐Bo Mo, Jin-Bo He, Pei He, Xin Lu, Hong‐Wen Deng, Fei‐Yan Deng, Shu‐Feng Lei
Software Mentions: 2
Published: over 5 years ago

10.1080/17453670902807474

Notes on the use and interpretation of radiostereometric analysis
Cited by: 56
Author(s): Brian Derbyshire, R. J. Prescott, Martyn Porter
Software Mentions: 2
Published: over 17 years ago

10.3389/fnins.2019.01033

Enzymatic Digestion of Hyaluronan-Based Brain Extracellular Matrix in vivo Can Induce Seizures in Neonatal Mice
Cited by: 12
Author(s): Alena Balashova, Vladimir Pershin, Olga Zaborskaya, Natalia Tkachenko, Andrey Mironov, Evgenii L. Guryev, Л. К. Курбатов, Murat R. Gainullin, И.В. Мухина
Software Mentions: 2
Published: almost 7 years ago

10.3390/genes10030194

Halobacterium salinarum virus ChaoS9, a Novel Halovirus Related to PhiH1 and PhiCh1
Cited by: 11
Author(s): Mike Dyall‐Smith, Peter Palm, Gerhard Wanner, Angela Witte, Dieter Oesterhelt, Friedhelm Pfeiffer
Software Mentions: 2
Published: over 7 years ago

10.1186/s13058-019-1142-z

Parity predisposes breasts to the oncogenic action of PAPP-A and activation of the collagen receptor DDR2
Cited by: 18
Author(s): Elizabeth Slocum, Amanda Craig, Augusto Villanueva, Doris Germain
Software Mentions: 2
Published: over 7 years ago

10.1186/bcr3567

An optimized five-gene multi-platform predictor of hormone receptor negative and triple negative breast cancer metastatic risk
Cited by: 28
Author(s): Christina Yau, John J. Sninsky, Shirley Kwok, Alice Wang, Amy C. Degnim, James N. Ingle, Cheryl Gillett, Andrew Tutt, Fred Waldman, Dan H. Moore, Laura J. Esserman, Christopher C. Benz
Software Mentions: 2
Published: almost 13 years ago

10.3389/fnins.2020.00479

Birth Weight and Stroke in Adult Life: Genetic Correlation and Causal Inference With Genome-Wide Association Data Sets
Cited by: 11
Author(s): Ting Wang, Zaixiang Tang, Xinghao Yu, Yixing Gao, Fengjun Guan, Bai Wei, Shuiping Huang, Junnian Zheng, Ping Zeng
Software Mentions: 2
Published: about 6 years ago

10.1002/cam4.3400

Immune‐related signature predicts the prognosis and immunotherapy benefit in bladder cancer
Cited by: 29
Author(s): Yejinpeng Wang, Changhong Liang, Mengxue Yu, Yayun Fang, Kaiyu Qian, Gang Wang, Lingao Ju, Yu Xiao, Xinghuan Wang
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2105-14-194

bioNerDS: exploring bioinformatics’ database and software use through literature mining
Cited by: 26
Author(s): Geraint Duck, Goran Nenadić, Andy Brass, David L. Robertson, Robert Stevens
Software Mentions: 2
Published: about 13 years ago

10.1093/database/bau030

'In silico expression analysis', a novel PathoPlant web tool to identify abiotic and biotic stress conditions associated with specific cis-regulatory sequences
Cited by: 18
Author(s): Julio C. Bolívar, Fabian Machens, Yuri Brill, Artyom Romanov, Lorenz Bülow, Reinhard Hehl
Software Mentions: 2
Published: over 12 years ago

10.1186/s40170-019-0202-2

Tissue of origin dictates GOT1 dependence and confers synthetic lethality to radiotherapy
Cited by: 28
Author(s): Barbara Scott Nelson, Lin Lin, Daniel M. Kremer, Cristovão M. Sousa, Cecilia Cotta‐Ramusino, Amy L. Myers, Johanna Ramos, Ting Gao, Ilya Kovalenko, Kari Wilder-Romans, Joseph Dresser, Mary A. Davis, Ho‐Joon Lee, Zeribe C. Nwosu, Scott Campit, Oksana Mashadova, Brandon Nicolay, Zachary P. Tolstyka, Christopher J. Halbrook, Sriram Chandrasekaran, John M. Asara, Howard C. Crawford, Lewis C. Cantley, Alec C. Kimmelman, Daniel R. Wahl, Costas A. Lyssiotis
Software Mentions: 2
Published: over 6 years ago

10.3390/genes11010106

Hormonal and Molecular Regulation of Phallus Differentiation in a Marsupial Tammar Wallaby
Cited by: 0
Author(s): Yu Chen, Marilyn B. Renfree
Software Mentions: 2
Published: over 6 years ago

10.3390/genes11040412

Transcriptomic Prediction of Pig Liver-Enriched Gene 1 Functions in a Liver Cell Line
Cited by: 0
Author(s): Zhe Zhang, Zizengchen Wang, Yanna Dang, Jinyang Wang, Sakthidasan Jayaprakash, Huanan Wang, Jin He
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pbio.3000324

DPPA2/4 and SUMO E3 ligase PIAS4 opposingly regulate zygotic transcriptional program
Cited by: 71
Author(s): Yao-Long Yan, Chao Zhang, Jun Hao, Xuelian Wang, Ming Jia, Mi Li, Jie Na, Xinli Hu, Yangming Wang
Software Mentions: 2
Published: about 7 years ago

10.3390/e22091030

TMEA: A Thermodynamically Motivated Framework for Functional Characterization of Biological Responses to System Acclimation
Cited by: 5
Author(s): Kevin Schneider, Benedikt Venn, Timo Mühlhaus
Software Mentions: 2
Published: almost 6 years ago

10.3390/e20080576

Optimal Placement of Pressure Gauges for Water Distribution Networks Using Entropy Theory Based on Pressure Dependent Hydraulic Simulation
Cited by: 6
Author(s): Do Guen Yoo, Dong Eil Chang, Song Yangho, Jung Ho Lee
Software Mentions: 2
Published: about 8 years ago

10.3390/genes11080883

Exploring the lncRNAs Related to Skeletal Muscle Fiber Types and Meat Quality Traits in Pigs
Cited by: 25
Author(s): Rongyang Li, Bojiang Li, Aiwen Jiang, Yan Cao, Liming Hou, Zengkai Zhang, Xiying Zhang, Kee‐Hong Kim, Wangjun Wu
Software Mentions: 2
Published: about 6 years ago

10.1289/ehp.10216

Nanosize Titanium Dioxide Stimulates Reactive Oxygen Species in Brain Microglia and Damages Neurons <i>in Vitro</i>
Cited by: 399
Author(s): Thomas Long, Julianne Tajuba, Preethi Sama, Navid B. Saleh, Carol D. Swartz, Joel Parker, Susan Hester, Gregory V. Lowry, Bellina Veronesi
Software Mentions: 2
Published: almost 19 years ago

10.1007/s00894-015-2635-z

Pressure-imposed changes of benzoic acid crystals
Cited by: 8
Author(s): Piotr Cysewski
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pcbi.1003375

Detecting Genetic Association of Common Human Facial Morphological Variation Using High Density 3D Image Registration
Cited by: 50
Author(s): Shouneng Peng, Jingze Tan, Sile Hu, Hang Zhou, Jing Guo, Jin Li, Kun Tang
Software Mentions: 2
Published: over 12 years ago

10.3389/fonc.2021.697534

Multi-Omics Analysis of the Expression and Prognosis for FKBP Gene Family in Renal Cancer
Cited by: 9
Author(s): Zeqiang Sun, Qin Xin, Fang Juan-juan, Yongxin Tang, Yi‐Ming Fan
Software Mentions: 2
Published: about 5 years ago

10.1186/s12199-021-00932-6

Replacing school and out-of-school sedentary behaviors with physical activity and its associations with adiposity in children and adolescents: a compositional isotemporal substitution analysis
Cited by: 15
Author(s): Aleš Gába, Jan Dygrýn, Nikola Štefelová, Lukáš Rubín, Karel Hron, Lukáš Jakubec
Software Mentions: 2
Published: over 5 years ago

10.1186/s12863-020-00853-3

Sex determination in the GIFT strain of tilapia is controlled by a locus in linkage group 23
Cited by: 25
Author(s): Khanam Taslima, Stefanie Wehner, John B. Taggart, Hugues de Verdal, John A. H. Benzie, Michaël Bekaert, Brendan McAndrew, David J. Penman
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1000312

Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization
Cited by: 167
Author(s): Ines Thiele, Neema Jamshidi, Ronan M. T. Fleming, Bernhard Ø. Palsson
Software Mentions: 2
Published: over 17 years ago

10.3390/genes12091303

Yeast as a Tool to Understand the Significance of Human Disease-Associated Gene Variants
Cited by: 10
Author(s): Tiziana Cervelli, Alvaro Galli
Software Mentions: 2
Published: almost 5 years ago

10.3390/v10110649

Characterizing the Different Effects of Zika Virus Infection in Placenta and Microglia Cells
Cited by: 15
Author(s): Maria del Pilar Martinez Viedma, Brett E. Pickett
Software Mentions: 2
Published: over 7 years ago

10.1186/s12876-018-0927-3

Helicobacter pylori infections in Ethiopia; prevalence and associated factors: a systematic review and meta-analysis
Cited by: 30
Author(s): Addisu Melese, Chalachew Genet, Balew Zeleke, Tesfaye Andualem
Software Mentions: 2
Published: over 7 years ago

10.1155/2021/5511507

The Identification of Childhood Asthma Progression-Related lncRNAs and mRNAs Suitable as Biomarkers Using Weighted Gene Coexpression Network Analysis
Cited by: 4
Author(s): Min Hao, Jinling Zan
Software Mentions: 2
Published: about 5 years ago

10.1021/acs.est.0c02387

Log Mean Divisia Index Decomposition Analysis of the Demand for Building Materials: Application to Concrete, Dwellings, and the U.K.
Cited by: 10
Author(s): He He, Rupert J. Myers
Software Mentions: 2
Published: over 5 years ago

10.1007/s12031-018-1206-z

Biomarker and Drug Target Discovery Using Quantitative Proteomics Post-Intracerebral Hemorrhage Stroke in the Rat Brain
Cited by: 16
Author(s): Shuixiang Deng, Sheng-Ya Feng, Wei Wang, Feng Zhao, Yi Gong
Software Mentions: 2
Published: over 7 years ago

10.1186/s13072-019-0310-9

Virtual methylome dissection facilitated by single-cell analyses
Cited by: 3
Author(s): Liduo Yin, Ye Luo, Xiguang Xu, Shiyu Wen, Xiaowei Wu, Xuemei Lu, Hehuang Xie
Software Mentions: 2
Published: almost 7 years ago

10.12688/wellcomeopenres.14867.2

Tissue and host species-specific transcriptional changes in models of experimental visceral leishmaniasis
Cited by: 17
Author(s): Helen Ashwin, Karlheinz Seifert, Sarah Forrester, Najmeeyah Brown, Sandy MacDonald, Sally James, Dimitrios Lagos, Jon Timmis, Jeremy C. Mottram, Simon L. Croft, Paul M. Kaye
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2019.00291

Identification of RE1-Silencing Transcription Factor as a Promoter of Metastasis in Pancreatic Cancer
Cited by: 6
Author(s): Haoyi Jin, Peng Liu, Lingming Kong, Xiang Fei, Yang Gao, Tianyu Wu, Defeng Sun
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2019.01446

LDHA Promotes Oral Squamous Cell Carcinoma Progression Through Facilitating Glycolysis and Epithelial–Mesenchymal Transition
Cited by: 60
Author(s): Hao Cai, Jiaxin Li, Yadong Zhang, Yan Liao, Yue Zhu, Cheng Wang, Jinsong Hou
Software Mentions: 2
Published: over 6 years ago

10.1186/s12862-016-0733-x

Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment
Cited by: 61
Author(s): Tobias Großkopf, Jessika Consuegra, Joël Gaffé, John C. Willison, Richard E. Lenski, Orkun S. Soyer, Dominique Schneider
Software Mentions: 2
Published: almost 10 years ago

10.1155/2014/450621

RNA Sequencing Reveals Upregulation of RUNX1-RUNX1T1 Gene Signatures in Clear Cell Renal Cell Carcinoma
Cited by: 14
Author(s): Zhenggang Xiong, Hongjie Yu, Yan Ding, Chenchen Feng, Hanming Wei, Sha Tao, Dan Huang, S. Lilly Zheng, Jielin Sun, Jianfeng Xu, Zhaoxi Fang
Software Mentions: 2
Published: over 12 years ago

10.3389/fonc.2020.572919

Identification of a Transcriptional Prognostic Signature From Five Metabolic Pathways in Oral Squamous Cell Carcinoma
Cited by: 9
Author(s): Xiang Wu, Yuan Yao, Zhongwu Li, Huan Ge, Dongmiao Wang, Yanling Wang
Software Mentions: 2
Published: over 5 years ago

10.3892/ijmm.2014.1843

Comprehensive identification of essential pathways and transcription factors related to epilepsy by gene set enrichment analysis on microarray datasets
Cited by: 8
Author(s): Kan He, Weizhong Xiao, Wen Lv
Software Mentions: 2
Published: about 12 years ago

10.3390/epigenomes4040024

Simplified MethylRAD Sequencing to Detect Changes in DNA Methylation at Enhancer Elements in Differentiating Embryonic Stem Cells
Cited by: 3
Author(s): Debapriya Saha, Allison B Norvil, Nadia A. Lanman, Humaira Gowher
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13075-017-1224-1

Blood chemokine profile in untreated early rheumatoid arthritis: CXCL10 as a disease activity marker
Cited by: 53
Author(s): Jayesh M. Pandya, Anna‐Carin Lundell, Kerstin Andersson, Inger Nordström, Elke Theander, Anna Rudin
Software Mentions: 2
Published: over 9 years ago

10.3390/pathogens10050504

Drift of the Subgingival Periodontal Microbiome during Chronic Periodontitis in Type 2 Diabetes Mellitus Patients
Cited by: 14
Author(s): И П Балмасова, Evgenii I. Olekhnovich, Ksenia M. Klimina, Anna A. Korenkova, Maria T. Vakhitova, Elmar Babaev, Leyla A. Ovchinnikova, Yakov A. Lomakin, Иван Смирнов, В.Н. Царев, А. M. Mkrtumyan, Alexey A. Belogurov, Alexander G. Gabibov, Elena Ilina, С Д Арутюнов
Software Mentions: 2
Published: over 5 years ago

10.3390/pathogens10081048

Artificial Intelligence in Surveillance, Diagnosis, Drug Discovery and Vaccine Development against COVID-19
Cited by: 36
Author(s): Gunjan Arora, Jayadev Joshi, Rahul Shubhra Mandal, Nitisha Shrivastava, R Virmani, Tavpritesh Sethi
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2021.668424

Selenite Induces Cell Cycle Arrest and Apoptosis via Reactive Oxygen Species-Dependent Inhibition of the AKT/mTOR Pathway in Thyroid Cancer
Cited by: 8
Author(s): Zhen Cheng, Shuang Yu, Weiman He, Jie Li, Tianyi Xu, Junyu Xue, Peijie Shi, Shuwei Chen, Yanbing Li, Shubin Hong, Haipeng Xiao
Software Mentions: 2
Published: about 5 years ago

10.1186/s13075-019-1874-2

Iguratimod represses B cell terminal differentiation linked with the inhibition of PKC/EGR1 axis
Cited by: 29
Author(s): Ye Yan, Mei Liu, Liang Tang, Fukuan Du, Yuanhua Liu, Pei Hao, Qiong Fu, Qiang Guo, Qingran Yan, Xiaoming Zhang, Chunde Bao
Software Mentions: 2
Published: over 7 years ago

10.1186/ar4278

Transcriptomic signatures in cartilage ageing
Cited by: 58
Author(s): Mandy J. Peffers, Xuan Li, Peter Clegg
Software Mentions: 2
Published: over 13 years ago

10.7554/eLife.38986

Abnormal oxidative metabolism in a quiet genomic background underlies clear cell papillary renal cell carcinoma
Cited by: 34
Author(s): Jianing Xu, Ed Reznik, Ho‐Joon Lee, Gunes Gundem, Philip Jonsson, Judy Sarungbam, Anna Bialik, Francisco Sanchez‐Vega, Chad J. Creighton, Jake G. Hoekstra, Li Zhang, Peter Sajjakulnukit, Daniel M. Kremer, Zachary P. Tolstyka, Jozefina Casuscelli, Steve Stirdivant, Jie Tang, Nikolaus Schultz, Paul S Jeng, Yiyu Dong, Wenjing Su, Emily H. Cheng, Paul Russo, Jonathan Coleman, Elli Papaemmanuil, Ying-Bei Chen, Victor E. Reuter, Chris Sander, Scott R. Kennedy, James J. Hsieh, Costas A. Lyssiotis, Satish K. Tickoo, A. Ari Hakimi
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2021.619517

Establishment of a Macrophage Phenotypic Switch Related Prognostic Signature in Patients With Pancreatic Cancer
Cited by: 12
Author(s): Muxing Li, Hangyan Wang, Chunhui Yuan, Zhaolai Ma, Bin Jiang, Lei Li, Li Zhang, Dianrong Xiu
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.7015

Metabolic traits specific for lipid-overproducing strain of <i>Mucor circinelloides</i> WJ11 identified by genome-scale modeling approach
Cited by: 3
Author(s): Nattapat Isarankura Na Ayudhya, Kobkul Laoteng, Yuanda Song, Asawin Meechai, Wanwipa Vongsangnak
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.9462

Expression profile analysis to predict potential biomarkers for glaucoma: BMP1, DMD and GEM
Cited by: 4
Author(s): Dao wei Zhang, Shenghai Zhang, Jihong Wu
Software Mentions: 2
Published: almost 6 years ago

10.1038/s42003-020-0821-8

New insight into the molecular mechanism of colour differentiation among floral segments in orchids
Cited by: 60
Author(s): Bai Jun Li, Bao Qiang Zheng, Jie Yu Wang, Wen Chieh Tsai, Hsiao‐Chi Lu, Long−Hai Zou, Wei Xiao, Di Yang Zhang, Hong Juan Qiao, Zhong‐Jian Liu, Yan Wang
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.11278

The paeonol target gene autophagy-related 5 has a potential therapeutic value in psoriasis treatment
Cited by: 1
Author(s): Qian Zhang, Hongqiao Shi, Jiaan Zhang, Chenxue Jiang, Chunxiang Zhou
Software Mentions: 2
Published: about 5 years ago

10.1007/s00125-020-05107-6

Metabolic alterations in immune cells associate with progression to type 1 diabetes
Cited by: 37
Author(s): Partho Sen, Alex M. Dickens, M.A. López-Bascón, Tuomas Lindeman, Esko Kemppainen, Santosh Lamichhane, Tuukka Rönkkö, Jorma Ilonen, Jorma Toppari, Riitta Veijola, Heikki Hyöty, Tuulia Hyötyläinen, Mikael Knip, Matej Orešič
Software Mentions: 2
Published: over 6 years ago

10.1007/s00204-016-1824-6

Information-dependent enrichment analysis reveals time-dependent transcriptional regulation of the estrogen pathway of toxicity
Cited by: 20
Author(s): Salil N. Pendse, Alexandra Maertens, Michael Rosenberg, Dipanwita Roy, Rick A. Fasani, Marguerite M. Vantangoli, Samantha J. Madnick, Kim Boekelheide, Albert J. Fornace, Shelly Odwin, James D. Yager, Thomas Hartung, Melvin E. Andersen, Patrick D. McMullen
Software Mentions: 2
Published: almost 10 years ago

10.7717/peerj.9784

Distribution, evolution and expression of GATA-TFs provide new insights into their functions in light response and fruiting body development of Tolypocladium guangdongense
Cited by: 2
Author(s): Chenghua Zhang, Jinjie Wang, Wang-Qiu Deng, Tai­-Hui Li
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41388-018-0326-9

Transcription factor activating protein 4 is synthetically lethal and a master regulator of MYCN-amplified neuroblastoma
Cited by: 21
Author(s): Shuobo Boboila, Gonzalo Lopez, Jiyang Yu, Debarshi Banerjee, Angela Kadenhe-Chiweshe, Eileen Connolly, Jessica J. Kandel, Presha Rajbhandari, José M. Silva, Andrea Califano, Darrell J. Yamashiro
Software Mentions: 2
Published: about 8 years ago

10.1038/s41389-020-0209-0

PDK1 promotes ovarian cancer metastasis by modulating tumor-mesothelial adhesion, invasion, and angiogenesis via α5β1 integrin and JNK/IL-8 signaling
Cited by: 37
Author(s): Michelle K.Y. Siu, Yuxin Jiang, Jingjing Wang, Thomas Leung, Siew‐Fei Ngu, Annie Nga‐Yin Cheung, Hextan Y.S. Ngan, Ki Chan
Software Mentions: 2
Published: over 6 years ago

10.3390/diagnostics10080598

Somatostatin Receptor PET/CT Imaging for the Detection and Staging of Pancreatic NET: A Systematic Review and Meta-Analysis
Cited by: 25
Author(s): Matteo Bauckneht, Domenico Albano, Salvatore Annunziata, Giulia Santo, Priscilla Guglielmo, Viviana Frantellizzi, Alessia Branca, Cristina Ferrari, Alessandro Vento, Alessia Mirabile, Anna Nappi, Laura Evangelista, Pierpaolo Alongi, Riccardo Laudicella
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41416-018-0196-5

MiR-532-5p suppresses renal cancer cell proliferation by disrupting the ETS1-mediated positive feedback loop with the KRAS-NAP1L1/P-ERK axis
Cited by: 58
Author(s): Wei Zhai, Junjie Ma, Ronggang Zhu, Chun‐Fang Xu, Jin Zhang, Yonghui Chen, Zhiguo Chen, Dongkui Gong, Jiayi Zheng, Chen Chen, Saiyang Li, Butang Li, Yiran Huang, Wei Xue, Junhua Zheng
Software Mentions: 2
Published: about 8 years ago

10.1038/s41413-020-00120-2

MEF2C regulates osteoclastogenesis and pathologic bone resorption via c-FOS
Cited by: 25
Author(s): Takayuki Fujii, Koichi Murata, Se-Hwan Mun, Seyeon Bae, Ye Ji Lee, Tannia Pannellini, Ki‐Woon Kang, David J. Oliver, Kyung‐Hyun Park‐Min, Lionel B. Ivashkiv
Software Mentions: 2
Published: over 5 years ago

10.1155/2019/3491852

Metabolomics Analysis in Serum from Patients with Colorectal Polyp and Colorectal Cancer by ¹H-NMR Spectrometry
Cited by: 51
Author(s): Jinping Gu, Yaqing Xiao, Dan Shu, Xianrui Liang, Xiaomin Hu, Yuanyuan Xie, Donghai Lin, Hua Li
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.4935

High similarity in the microbiota of cold-water sponges of the Genus <i>Mycale</i> from two different geographical areas
Cited by: 28
Author(s): César Cárdenas, Marcelo González-Aravena, Alejandro Font, Jon Thomassen Hestetun, Eduardo Hajdu, Nicole Trefault, Maja Malmberg, Erik Bongcam‐Rudloff
Software Mentions: 2
Published: about 8 years ago

10.1186/s13059-021-02291-5

MEDALT: single-cell copy number lineage tracing enabling gene discovery
Cited by: 14
Author(s): Fang Wang, Qihan Wang, Vakul Mohanty, Shaoheng Liang, Jun Dou, Jiaying Han, Darlan Conterno Minussi, Ruli Gao, Ding Li, Nicholas E. Navin, Ken Chen
Software Mentions: 2
Published: over 5 years ago

10.1186/s40478-017-0424-x

A data-driven approach links microglia to pathology and prognosis in amyotrophic lateral sclerosis
Cited by: 54
Author(s): Johnathan Cooper‐Knock, Claire Green, Gabriel Altschuler, Wenbin Wei, Joanna J. Bury, Paul R. Heath, Matthew Wyles, Catherine Gelsthorpe, J. Robin Highley, Alejandro Lorente-Pons, Tim Beck, Kathryn Doyle, Karel Otero, Bryan J. Traynor, Janine Kirby, Pamela J. Shaw, Winston Hide
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.9000

Identification of key miRNAs in the progression of hepatocellular carcinoma using an integrated bioinformatics approach
Cited by: 3
Author(s): Qi Zheng, Xiaoyong Wei, Jun Rao, Cuncai Zhou
Software Mentions: 2
Published: over 6 years ago

10.1186/gm519

miR-638 regulates gene expression networks associated with emphysematous lung destruction
Cited by: 63
Author(s): Stephanie A. Christenson, Corry‐Anke Brandsma, Joshua D. Campbell, Darryl A. Knight, Dmitri V. Pechkovsky, James C. Hogg, Wim Timens, Dirkje S. Postma, Marc E. Lenburg, Avrum Spira
Software Mentions: 2
Published: over 13 years ago

10.7717/peerj.6355

New insight into the phylogeographic pattern of<i>Liriodendron chinense</i>(Magnoliaceae) revealed by chloroplast DNA: east–west lineage split and genetic mixture within western subtropical China
Cited by: 10
Author(s): Aihong Yang, Yongda Zhong, Shujuan Liu, Lipan Liu, Tengyun Liu, Yanqiang Li, Fang Yu
Software Mentions: 2
Published: over 7 years ago

10.1038/s41413-019-0055-x

Extra-skeletal manifestations in mice affected by Clcn7-dependent autosomal dominant osteopetrosis type 2 clinical and therapeutic implications
Cited by: 12
Author(s): Antonio Maurizi, Mattia Capulli, A Curle, Rajvi Patel, Argia Ucci, JA Cortes, H Oxford, Shireen R. Lamandé, J Bateman, Nadia Rucci, Anna Teti
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.5460

Spatio–temporal variation in stable isotope signatures (δ¹³C and δ¹⁵N) of sponges on the Saba Bank
Cited by: 8
Author(s): Fleur C. van Duyl, Benjamin Mueller, H.W.G. Meesters
Software Mentions: 2
Published: about 8 years ago

10.3390/biom11040579

Chemoinformatics Studies on a Series of Imidazoles as Cruzain Inhibitors
Cited by: 5
Author(s): Alex R. Medeiros, Leonardo L. G. Ferreira, Márcia Regina de Souza, Celso de Oliveira Rezende, Rocio Marisol Espinoza Chávez, Luiz C. Dias, Adriano D. Andricopulo
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/1392674

Increased Expression of LYNX1 in Ovarian Serous Cystadenocarcinoma Predicts Poor Prognosis
Cited by: 3
Author(s): Hui Liu, Ao Wang, Yu Ma
Software Mentions: 2
Published: over 5 years ago

10.1186/s13045-018-0663-8

Long non-coding RNAs in esophageal cancer: molecular mechanisms, functions, and potential applications
Cited by: 48
Author(s): Min Su, Yuhang Xiao, Junliang Ma, Deliang Cao, Yong Zhou, Hui Wang, Qianjin Liao, Wenxiang Wang
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41389-020-0239-7

MeCP2 facilitates breast cancer growth via promoting ubiquitination-mediated P53 degradation by inhibiting RPL5/RPL11 transcription
Cited by: 25
Author(s): Dongdong Tong, Jing Zhang, Xiaofei Wang, Qian Li, Li Ying Liu, Juan Yang, Bo Guo, Lei Ni, Lingyu Zhao, Chen Huang
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.4210

Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak
Cited by: 58
Author(s): Jason C Kwong, Courtney R Lane, Finn Romanes, Anders Gonçalves da Silva, Marion Easton, Katie Cronin, Mary Jo Waters, Takehiro Tomita, Kerrie Stevens, Mark B. Schultz, Sarah L. Baines, Norelle L Sherry, Glen P. Carter, Andre Mu, Michelle Sait, Susan A Ballard, Torsten Seemann, Timothy P. Stinear, Benjamin P Howden
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.6472

Metacommunity patterns of Amazonian Odonata: the role of environmental gradients and major rivers
Cited by: 14
Author(s): Fernanda Alves‐Martins, Leandro Schlemmer Brasil, Leandro Juen, Paulo de Marco Júnior, Juliana Stropp, Joaquín Hortal
Software Mentions: 2
Published: over 7 years ago

10.1242/dmm.039578

Reversion of tumor hepatocytes to normal hepatocytes during liver tumor regression in an oncogene transgenic zebrafish model
Cited by: 12
Author(s): Yan Li, Ira Agrawal, Zhiyuan Gong
Software Mentions: 2
Published: over 7 years ago

10.3390/plants8100422

Exploration of Floral Volatile Organic Compounds in Six Typical Lycoris taxa by GC-MS
Cited by: 13
Author(s): Tingting Shi, Yuanzheng Yue, Man Shi, Min Chen, Xia Yang, Lianggui Wang
Software Mentions: 2
Published: almost 7 years ago

10.3390/pharmaceutics11060264

Scale-Up Strategy in Quality by Design Approach for Pharmaceutical Blending Process with Discrete Element Method Simulation
Cited by: 12
Author(s): Su Bin Yeom, Du Hyung Choi
Software Mentions: 2
Published: about 7 years ago