pypi: analysis | Projects | Ecosyste.ms: Papers

10.3389/fpls.2017.00080

Digital Gene Expression Analysis Provides Insight into the Transcript Profile of the Genes Involved in Aporphine Alkaloid Biosynthesis in Lotus (Nelumbo nucifera)
Cited by: 13
Author(s): Mei Yang, Liming Zhu, Ling Li, Juanjuan Li, Liming Xu, Jia‐Xun Feng, Yanling Liu
Software Mentions: 2
Published: almost 9 years ago

10.4103/0975-7406.76463

Differential scanning calorimetry: An invaluable tool for a detailed thermodynamic characterization of macromolecules and their interactions
Cited by: 278
Author(s): Michael Chiu, Elmar J. Prenner
Software Mentions: 2
Published: almost 15 years ago

10.3389/fpls.2016.00490

Genome-Wide Identification and Function Analyses of Heat Shock Transcription Factors in Potato
Cited by: 50
Author(s): Ruimin Tang, Wenjiao Zhu, Xiao‐Yan Song, Xingzhong Lin, Jinghui Cai, Man Wang, Qing Yang
Software Mentions: 2
Published: over 9 years ago

10.1186/s12885-020-6676-z

Identification of potential novel biomarkers to differentiate malignant thyroid nodules with cytological indeterminate
Cited by: 9
Author(s): Dandan Wu, Shudong Hu, Yongzhong Hou, Yingying He, Shubai Liu
Software Mentions: 2
Published: over 5 years ago

10.1262/jrd.2018-136

Glycerol kinase 2 is essential for proper arrangement of crescent-like mitochondria to form the mitochondrial sheath during mouse spermatogenesis
Cited by: 27
Author(s): Keisuke Shimada, Hirotaka Kato, Haruhiko Miyata, Masahito Ikawa
Software Mentions: 2
Published: almost 7 years ago

10.1186/s40478-017-0424-x

A data-driven approach links microglia to pathology and prognosis in amyotrophic lateral sclerosis
Cited by: 54
Author(s): Johnathan Cooper‐Knock, Claire Green, Gabriel Altschuler, Wenbin Wei, Joanna J. Bury, Paul R. Heath, Matthew Wyles, Catherine Gelsthorpe, J. Robin Highley, Alejandro Lorente-Pons, Tim Beck, Kathryn Doyle, Karel Otero, Bryan J. Traynor, Janine Kirby, Pamela J. Shaw, Winston Hide
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0158767

Assessing Progress, Impact, and Next Steps in Rolling Out Voluntary Medical Male Circumcision for HIV Prevention in 14 Priority Countries in Eastern and Southern Africa through 2014
Cited by: 44
Author(s): Katharine Kripke, Emmanuel Njeuhmeli, Julia Samuelson, Melissa Schnure, Shona Dalal, Timothy M.M. Farley, Catherine Hankins, Anne Thomas, Jason Reed, Peter Stegman, Naomi Bock
Software Mentions: 2
Published: over 9 years ago

10.3389/fphys.2017.01010

Weighted Gene Co-expression Network Analysis Identifies FKBP11 as a Key Regulator in Acute Aortic Dissection through a NF-kB Dependent Pathway
Cited by: 31
Author(s): Tao Wang, Xingwei He, Xintian Liu, Yujian Liu, Wenjun Zhang, Qiang Huang, Wanjun Liu, Luyang Xiong, Rong Tan, Hongjie Wang, Hesong Zeng
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12859-015-0527-y

Cell-composition effects in the analysis of DNA methylation array data: a mathematical perspective
Cited by: 88
Author(s): E. Andrés Houseman, Karl T. Kelsey, John K. Wiencke, Carmen J. Marsit
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0067489

Fetal DNA Methylation Associates with Early Spontaneous Preterm Birth and Gestational Age
Cited by: 84
Author(s): Sasha Parets, Karen N. Conneely, Varun Kilaru, Stephen J. Fortunato, Tariq Ali Syed, George R. Saade, Alicia K. Smith, Ramkumar Menon
Software Mentions: 2
Published: over 12 years ago

10.1186/s12967-020-02630-3

A machine learning-based clinical tool for diagnosing myopathy using multi-cohort microarray expression profiles
Cited by: 6
Author(s): Andrew Tran, Chris J. Walsh, Jane Batt, Claudia C. dos Santos, Pingzhao Hu
Software Mentions: 2
Published: almost 5 years ago

10.1186/1479-5876-4-29

Gene expression in acute Stanford type A dissection: a comparative microarray study
Cited by: 44
Author(s): Barbara Theresia Weis-Müller, Olga Modlich, Irina Drobinskaya, Derya Unay, Rita Huber, Hans Bojar, Jochen D. Schipke, P. Feindt, E. Gams, Wolfram Müller, Timm O. Goecke, W. Sandmann
Software Mentions: 2
Published: over 19 years ago

10.3389/fphys.2018.00215

Mechanistic Role of Reactive Oxygen Species and Therapeutic Potential of Antioxidants in Denervation- or Fasting-Induced Skeletal Muscle Atrophy
Cited by: 62
Author(s): Jiaying Qiu, Qian Fang, Tongtong Xu, Changyue Wu, Lai Xu, Lingbin Wang, Xiaoming Yang, Shu Yu, Qi Zhang, Fei Ding, Hualin Sun
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0118466

Ancestry Dependent DNA Methylation and Influence of Maternal Nutrition
Cited by: 40
Author(s): Khyobeni Mozhui, Alicia K. Smith, Frances A. Tylavsky
Software Mentions: 2
Published: over 10 years ago

10.3389/fphar.2020.00932

1H NMR-Based Metabolomics Coupled With Molecular Docking Reveal the Anti-Diabetic Effects and Potential Active Components of Berberis vernae on Type 2 Diabetic Rats
Cited by: 22
Author(s): Qi Li, Chengcheng Zhao, Yunsen Zhang, Huan Du, Tong Xu, Xinmei Xu, Jing Zhang, Tingting Kuang, Xiulan Lai, Gang Fan
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2021.577623

Gene Set Enrichment Analysis of Interaction Networks Weighted by Node Centrality
Cited by: 23
Author(s): Alessandra Zito, Marta Lualdi, Paola Granata, Dario Cocciadiferro, Antonio Novelli, Tiziana Alberio, Rosario Casalone, Mauro Fasano
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0253442

Joint representation of color and form in convolutional neural networks: A stimulus-rich network perspective
Cited by: 7
Author(s): JohnMark Taylor, Yaoda Xu
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2019.00019

Systems Biology Approaches Toward Understanding Primary Mitochondrial Diseases
Cited by: 11
Author(s): Elaina M. Maldonado, F. Taha, Joyeeta Rahman, Shamima Rahman
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12882-021-02447-2

Comprehensive analysis of diabetic nephropathy expression profile based on weighted gene co-expression network analysis algorithm
Cited by: 17
Author(s): Alieh Gholaminejad, Mohammad Fathalipour, Amir Roointan
Software Mentions: 2
Published: over 4 years ago

10.3389/fphar.2020.00357

Prospective Risk Assessment of Medicine Shortages in Europe and Israel: Findings and Implications
Cited by: 21
Author(s): Nenad Miljković, Brian Godman, Milena Kovačević, Piera Polidori, L Tzimis, Torsten Hoppe-Tichy, M. Saar, Ioan Antofie, L Horváth, Thomas De Rijdt, Róbert György Vida, Elena Kkolou, David Preece, Biljana Tubić, Joan Peppard, Alicia Martínez, Cristina García Yubero, Raymond N. Haddad, Dragana Rajinac, Pavle Zelić, Helena Jenzer, Franci Tartar, Gunda Gitler, Martina Jeske, M Davidescu, Guillaume Béraud, Darija Kuruc-Poje, Kristine Sakstrup Haag, Hanne Fischer, Inese Sviestiņa, Gordana Ljubojević, Anne Markestad, Vesna Vujić‐Aleksić, Lana Nežić, Anica Crkvenčić, Johanna Linnolahti, Bogdan Ašanin, Nataša Duborija-Kovačević, Tomasz Bochenek, Isabelle Huys, Branislava Miljković
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/1371632

Network-Based Coexpression Analysis Identifies Functional and Prognostic Long Noncoding RNAs in Hepatocellular Carcinoma
Cited by: 1
Author(s): Jianguo Li, Jin Zhang, Shuangshuang Kai, Can Wang, Daijun Wang, Jiying Jiang
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0096153

Transcriptome Profiling of Human Ulcerative Colitis Mucosa Reveals Altered Expression of Pathways Enriched in Genetic Susceptibility Loci
Cited by: 8
Author(s): Christopher J. Cardinale, Zhi Wei, Jin Li, Junfei Zhu, Mengnan Gu, Robert N. Baldassano, Struan F.A. Grant, Hákon Hákonarson
Software Mentions: 2
Published: over 11 years ago

10.3389/fphar.2019.01310

Probing the Druggablility on the Interface of the Protein–Protein Interaction and Its Allosteric Regulation Mechanism on the Drug Screening for the CXCR4 Homodimer
Cited by: 5
Author(s): Liting Shen, Yuan Yuan, Yanzhi Guo, Menglong Li, Chuan Li, Xuemei Pu
Software Mentions: 2
Published: about 6 years ago

10.3389/fphar.2020.00952

Hypo-Osmotic Loading Induces Expression of IL-6 in Nucleus Pulposus Cells of the Intervertebral Disc Independent of TRPV4 and TRPM7
Cited by: 8
Author(s): Aleksandra Sadowska, Birsen Altinay, Wolfgang Hitzl, Stephen J. Ferguson, Karin Wuertz‐Kozak
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.584683

Multiple Myeloma Cells Alter Adipogenesis, Increase Senescence-Related and Inflammatory Gene Transcript Expression, and Alter Metabolism in Preadipocytes
Cited by: 19
Author(s): Heather Fairfield, Samantha Costa, Carolyne Falank, Mariah Farrell, Connor Murphy, Anastasia D’Amico, Heather Driscoll, Michaela R. Reagan
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12891-019-2562-8

Musculoskeletal application and validation of speckle-tracking ultrasonography
Cited by: 13
Author(s): Lars Henrik Frich, Kate Lykke Lambertsen, John Hjarbæk, Jordi S. Dahl, Anders Holsgaard-Larsen
Software Mentions: 2
Published: over 6 years ago

10.3390/nu10091255

Lactobacillus acidophilus DDS-1 Modulates the Gut Microbiota and Improves Metabolic Profiles in Aging Mice
Cited by: 57
Author(s): Ravichandra Vemuri, Rajaraman Eri, Rohit Gundamaraju, Shakuntla Gondalia, Avinash V. Karpe, David J. Beale, Christopher Martoni, Rajaraman Eri
Software Mentions: 2
Published: about 7 years ago

10.3390/nu12103140

Statistical and Machine-Learning Analyses in Nutritional Genomics Studies
Cited by: 14
Author(s): Leila Khorraminezhad, Mickaël Leclercq, Arnaud Droit, Jean‐François Bilodeau, Iwona Rudkowska
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.590475

Identification and Expression Analysis of Long Non-coding RNA in Large Yellow Croaker (Larimichthys crocea) in Response to Cryptocaryon irritans Infection
Cited by: 12
Author(s): Xinyi Zhang, Tao Zhou, Baohua Chen, Haili Bai, Yulin Bai, Ji Zhao, Fei Pu, Yidi Wu, Chen Lin, You Shi, Qiaozhen Ke, Weiqiang Zheng, Jia Chen, Peng Xu
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.636591

Molecular Classification Based on Prognostic and Cell Cycle-Associated Genes in Patients With Colon Cancer
Cited by: 7
Author(s): Zhiyuan Zhang, Meiling Ji, Jie Li, Qi Wu, Yuesheng Huang, Guodong He, Jiacheng Xu
Software Mentions: 2
Published: over 4 years ago

10.3390/nu13061788

Hepatic Nfe2l2 Is Not an Essential Mediator of the Metabolic Phenotype Produced by Dietary Methionine Restriction
Cited by: 4
Author(s): Fei Han, Kirsten P. Stone, Sujoy Ghosh, Laura A. Forney, Landon C. Sims, Leighann Y Vincik, Thomas W. Gettys
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2021.631943

Hepatic Steatosis Predicts Higher Incidence of Recurrence in Colorectal Cancer Liver Metastasis Patients
Cited by: 7
Author(s): Haiyan Chen, Siqi Dai, Yunxia Fang, Liubo Chen, Kai Jiang, Qichun Wei, Kefeng Ding
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0117029

Functional Network Overlap as Revealed by fMRI Using sICA and Its Potential Relationships with Functional Heterogeneity, Balanced Excitation and Inhibition, and Sparseness of Neuron Activity
Cited by: 17
Author(s): Jiansong Xu, Vince D. Calhoun, Patrick D. Worhunsky, Hui Xiang, Jian Li, John T. Wall, Godfrey D. Pearlson, Marc N. Potenza
Software Mentions: 2
Published: almost 11 years ago

10.3389/fonc.2019.00310

Overexpression of ASPM, CDC20, and TTK Confer a Poorer Prognosis in Breast Cancer Identified by Gene Co-expression Network Analysis
Cited by: 50
Author(s): Jianing Tang, Mengxin Lü, Qiuxia Cui, Dan Zhang, Deguang Kong, Xing Liao, Jiangbo Ren, Yan Gong
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2020.575657

Translating Preclinical Research for Exercise Oncology: Take It to the VO2max
Cited by: 3
Author(s): Donald M. Lamkin, Theodore Garland
Software Mentions: 2
Published: about 5 years ago

10.1155/2014/450621

RNA Sequencing Reveals Upregulation of RUNX1-RUNX1T1 Gene Signatures in Clear Cell Renal Cell Carcinoma
Cited by: 14
Author(s): Zhenggang Xiong, Hongjie Yu, Yan Ding, Chenchen Feng, Hanming Wei, Sha Tao, Dan Huang, S. Lilly Zheng, Jielin Sun, Jianfeng Xu, Zhaoxi Fang
Software Mentions: 2
Published: almost 12 years ago

10.1186/s13229-017-0130-3

Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism
Cited by: 44
Author(s): Rui Chen, Lea K. Davis, Stephen J. Guter, Qiang Wei, Suma Jacob, Melissa H. Potter, Nancy J. Cox, Edwin H. Cook, James S. Sutcliffe, Bingshan Li
Software Mentions: 2
Published: over 8 years ago

10.3389/fonc.2019.01325

Novel Breast-Specific Long Non-coding RNA LINC00993 Acts as a Tumor Suppressor in Triple-Negative Breast Cancer
Cited by: 25
Author(s): Shipeng Guo, Jiang Lei, Kai Tao, Chen Chen, Haochen Yu, Shengchun Liu
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0230392

High-mobility group box 1 fragment suppresses adverse post-infarction remodeling by recruiting PDGFRα-positive bone marrow cells
Cited by: 13
Author(s): Tetsushi Goto, Katsuto Tamai, Ryohei Matsuura, Takashi Kido, Toru Kuratani, Kazuo Shimamura, Ryoto Sakaniwa, Akira Harada, Yoshiki Sawa
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0130326

Bayesian Spatial NBDA for Diffusion Data with Home-Base Coordinates
Cited by: 3
Author(s): Glenna Nightingale, Kevin N. Laland, William Hoppitt, Peter Nightingale
Software Mentions: 2
Published: over 10 years ago

10.1155/2020/4045204

Global Analysis of Alternative Splicing Difference in Peripheral Immune Organs between Tongcheng Pigs and Large White Pigs Artificially Infected with PRRSV <i>In Vivo</i>
Cited by: 5
Author(s): Yu Zhang, Liyao Xue, Xu Hang, Wan Liang, Qingqing Wu, Qingde Zhang, Xiang Zhou, Bang Liu
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-021-07709-9

Dual species dynamic transcripts reveal the interaction mechanisms between Chrysanthemum morifolium and Alternaria alternata
Cited by: 5
Author(s): Lina Liu, Fadi Chen, Sumei Chen, Weimin Fang, Ye Liu, Zhiyong Guan
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0124806

Net Clinical Benefit of Oral Anticoagulants: A Multiple Criteria Decision Analysis
Cited by: 20
Author(s): Jason C. Hsu, Cheng Yang Hsieh, Yea Huei Kao Yang, Christine Y. Lu
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0202751

Long length of stay at the emergency department is mostly caused by organisational factors outside the influence of the emergency department: A root cause analysis
Cited by: 42
Author(s): Babiche E. J. M. Driesen, Bauke H.G. Van Riet, Lisa Verkerk, H. Jaap Bonjer, Hanneke Merten, Prabath W.B. Nanayakkara
Software Mentions: 2
Published: about 7 years ago

10.1186/1471-2105-14-194

bioNerDS: exploring bioinformatics’ database and software use through literature mining
Cited by: 26
Author(s): Geraint Duck, Goran Nenadić, Andy Brass, David L. Robertson, Robert Stevens
Software Mentions: 2
Published: over 12 years ago

10.3390/microorganisms9020240

Shedding Light on the African Enigma: In Vitro Testing of Homo sapiens-Helicobacter pylori Coevolution
Cited by: 9
Author(s): Bruno Cavadas, Marina Concli Leite, Nicole Pedro, Ana C. Magalhães, Joana Melo, Marcelo Correia, Valdemar Máximo, Rui Camacho, Nuno A. Fonseca, Céu Figueiredo, Luı́sa Pereira
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2021.619517

Establishment of a Macrophage Phenotypic Switch Related Prognostic Signature in Patients With Pancreatic Cancer
Cited by: 12
Author(s): Muxing Li, Hangyan Wang, Chunhui Yuan, Zhaolai Ma, Bin Jiang, Lei Li, Li Zhang, Dianrong Xiu
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2019.01187

Identification of Microenvironment-Related Prognostic Genes in Bladder Cancer Based on Gene Expression Profile
Cited by: 31
Author(s): Yongxiang Luo, Guohua Zeng, Song Wu
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0177513

An integrative analysis of tissue-specific transcriptomic and metabolomic responses to short-term dietary methionine restriction in mice
Cited by: 30
Author(s): Sujoy Ghosh, Laura A. Forney, Desiree Wanders, Kirsten P. Stone, Thomas W. Gettys
Software Mentions: 2
Published: over 8 years ago

10.1186/s40170-019-0202-2

Tissue of origin dictates GOT1 dependence and confers synthetic lethality to radiotherapy
Cited by: 28
Author(s): Barbara Scott Nelson, Lin Lin, Daniel M. Kremer, Cristovão M. Sousa, Cecilia Cotta‐Ramusino, Amy L. Myers, Johanna Ramos, Ting Gao, Ilya Kovalenko, Kari Wilder-Romans, Joseph Dresser, Mary A. Davis, Ho‐Joon Lee, Zeribe C. Nwosu, Scott Campit, Oksana Mashadova, Brandon Nicolay, Zachary P. Tolstyka, Christopher J. Halbrook, Sriram Chandrasekaran, John M. Asara, Howard C. Crawford, Lewis C. Cantley, Alec C. Kimmelman, Daniel R. Wahl, Costas A. Lyssiotis
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2021.668424

Selenite Induces Cell Cycle Arrest and Apoptosis via Reactive Oxygen Species-Dependent Inhibition of the AKT/mTOR Pathway in Thyroid Cancer
Cited by: 8
Author(s): Zhen Cheng, Shuang Yu, Weiman He, Jie Li, Tianyi Xu, Junyu Xue, Peijie Shi, Shuwei Chen, Yanbing Li, Shubin Hong, Haipeng Xiao
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2020.572919

Identification of a Transcriptional Prognostic Signature From Five Metabolic Pathways in Oral Squamous Cell Carcinoma
Cited by: 9
Author(s): Xiang Wu, Yuan Yao, Zhongwu Li, Huan Ge, Dongmiao Wang, Yanling Wang
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12935-015-0224-y

Inhibition of CDK4/6 as a novel therapeutic option for neuroblastoma
Cited by: 36
Author(s): Ali Rihani, Jo Vandesompele, Frank Speleman, Torn Van Maerken
Software Mentions: 2
Published: over 10 years ago

10.1155/2021/5587441

Identification of Molecular Characteristics and New Prognostic Targets for Thymoma by Multiomics Analysis
Cited by: 4
Author(s): Dazhong Liu, Pengfei Zhang, Jichun Zhao, Lei Yang, Wei Wang
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2019.01446

LDHA Promotes Oral Squamous Cell Carcinoma Progression Through Facilitating Glycolysis and Epithelial–Mesenchymal Transition
Cited by: 60
Author(s): Hao Cai, Jiaxin Li, Yadong Zhang, Yan Liao, Yue Zhu, Cheng Wang, Jinsong Hou
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12935-020-01361-1

Identification of four hub genes as promising biomarkers to evaluate the prognosis of ovarian cancer in silico
Cited by: 16
Author(s): Jingxuan Chen, Yun Cai, Rui Xu, Jiadong Pan, Jie Zhou, Jie Mei
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0070412

Detection of Deregulated Modules Using Deregulatory Linked Path
Cited by: 5
Author(s): Yuxuan Hu, Lin Gao, Kai Shi, David Chiu
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0055137

Construction and Analysis of the Model of Energy Metabolism in E. coli
Cited by: 4
Author(s): Zixiang Xu, Xiao Sun, Jibin Sun
Software Mentions: 2
Published: almost 13 years ago

10.3389/fonc.2019.00291

Identification of RE1-Silencing Transcription Factor as a Promoter of Metastasis in Pancreatic Cancer
Cited by: 6
Author(s): Haoyi Jin, Peng Liu, Lingming Kong, Xiang Fei, Yang Gao, Tianyu Wu, Defeng Sun
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0094700

The Role of Wildfire, Prescribed Fire, and Mountain Pine Beetle Infestations on the Population Dynamics of Black-Backed Woodpeckers in the Black Hills, South Dakota
Cited by: 31
Author(s): Christopher T. Rota, Joshua J. Millspaugh, Mark A. Rumble, Chad P. Lehman, Dylan C. Kesler
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0088896

Long-Term Effects of Gestational Nicotine Exposure and Food-Restriction on Gene Expression in the Striatum of Adolescent Rats
Cited by: 5
Author(s): Nicholas E. Ilott, Tomasz Schneider, Jonathan Mill, Leonard C. Schalkwyk, Giovana Brolese, Lisiane Bizarro, I. P. Stolerman, Emma Dempster, Philip Asherson
Software Mentions: 2
Published: almost 12 years ago

10.1186/s40168-020-00923-9

The interplay between host genetics and the gut microbiome reveals common and distinct microbiome features for complex human diseases
Cited by: 64
Author(s): Fengzhe Xu, Yuanqing Fu, Tao Sun, Zengliang Jiang, Zelei Miao, Menglei Shuai, Wanglong Gou, Chu-wen Ling, Jian Yang, Jun Wang, Yuming Chen, Ju‐Sheng Zheng
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2021.628041

Effects of Monochromatic Lighting During Incubation and Vaccination on the Splenic Transcriptome Profiles of Chicken
Cited by: 3
Author(s): Mohamed M. Ibrahim, Jill R. Nelson, Gregory S. Archer, Giridhar Athrey
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2021.697534

Multi-Omics Analysis of the Expression and Prognosis for FKBP Gene Family in Renal Cancer
Cited by: 9
Author(s): Zeqiang Sun, Qin Xin, Fang Juan-juan, Yongxin Tang, Yi‐Ming Fan
Software Mentions: 2
Published: over 4 years ago

10.1186/s12934-019-1229-3

A metabolic reconstruction of Lactobacillus reuteri JCM 1112 and analysis of its potential as a cell factory
Cited by: 18
Author(s): Thordis Kristjansdottir, Elleke Fenna Bosma, Filipe Branco dos Santos, Emre Özdemir, Markus J. Herrgård, Lucas França, Bruno Sommer Ferreira, Alex Toftgaard Nielsen, Steinn Guðmundsson
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0063644

Identification of Altered Metabolic Pathways in Plasma and CSF in Mild Cognitive Impairment and Alzheimer’s Disease Using Metabolomics
Cited by: 338
Author(s): Eugenia Trushina, Tumpa Dutta, Xuan Mai T. Persson, Michelle M. Mielke, Ronald C. Petersen
Software Mentions: 2
Published: over 12 years ago

10.1111/acel.13229

Underlying features of epigenetic aging clocks in vivo and in vitro
Cited by: 84
Author(s): Zuyun Liu, Diana Leung, Kyra Thrush, Wei Zhao, Scott Ratliff, Toshiko Tanaka, Lauren Schmitz, Jennifer A. Smith, Luigi Ferrucci, Morgan E. Levine
Software Mentions: 2
Published: about 5 years ago

10.3389/fnins.2020.00479

Birth Weight and Stroke in Adult Life: Genetic Correlation and Causal Inference With Genome-Wide Association Data Sets
Cited by: 11
Author(s): Ting Wang, Zaixiang Tang, Xinghao Yu, Yixing Gao, Fengjun Guan, Bai Wei, Shuiping Huang, Junnian Zheng, Ping Zeng
Software Mentions: 2
Published: over 5 years ago

10.1080/17453670902807474

Notes on the use and interpretation of radiostereometric analysis
Cited by: 56
Author(s): Brian Derbyshire, R. J. Prescott, Martyn Porter
Software Mentions: 2
Published: almost 17 years ago

10.1371/journal.pone.0231021

Exploitation of local and global information in predictive processing
Cited by: 1
Author(s): Daniel S. Kluger, Nico Broers, Marlen A. Roehe, Moritz F. Wurm, Niko A. Busch, Ricarda Ines Schubotz
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/3962146

TPPP3 Associated with Prognosis and Immune Infiltrates in Head and Neck Squamous Carcinoma
Cited by: 9
Author(s): Zheng Yang, Xiaohong Li, Jingyu Li, Qingde Su, Yuling Qiu, Zunni Zhang, Liqian Zhang, Wuning Mo
Software Mentions: 2
Published: about 5 years ago

10.3389/fnins.2019.01033

Enzymatic Digestion of Hyaluronan-Based Brain Extracellular Matrix in vivo Can Induce Seizures in Neonatal Mice
Cited by: 12
Author(s): Alena Balashova, Vladimir Pershin, Olga Zaborskaya, Natalia Tkachenko, Andrey Mironov, Evgenii L. Guryev, Л. К. Курбатов, Murat R. Gainullin, И.В. Мухина
Software Mentions: 2
Published: about 6 years ago

10.1186/s12920-015-0078-0

Integrative network analysis reveals different pathophysiological mechanisms of insulin resistance among Caucasians and African Americans
Cited by: 15
Author(s): Swapan K. Das, Neeraj Kumar Sharma, Bin Zhang
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0106050

Tau Overexpression Impacts a Neuroinflammation Gene Expression Network Perturbed in Alzheimer’s Disease
Cited by: 87
Author(s): Paul D. Wes, Amy Easton, John P. Corradi, Donna M. Barten, Nino Devidze, Lynn B. DeCarr, Amy Truong, Aiqing He, Nestor X. Barrezueta, Craig Polson, Clotilde Bourin, Marianne E. Flynn, Stefanie Keenan, Regina Lidge, Jere E. Meredith, JoAnne E. Natale, Sethu Sankaranarayanan, Gregory Cadelina, Charlie Albright, Angela Cacace
Software Mentions: 2
Published: over 11 years ago

10.1186/s12862-016-0733-x

Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment
Cited by: 61
Author(s): Tobias Großkopf, Jessika Consuegra, Joël Gaffé, John C. Willison, Richard E. Lenski, Orkun S. Soyer, Dominique Schneider
Software Mentions: 2
Published: over 9 years ago

10.3390/cancers13123057

Distinct Responsiveness of Tumor-Associated Macrophages to Immunotherapy of Tumors with Different Mechanisms of Major Histocompatibility Complex Class I Downregulation
Cited by: 2
Author(s): Adrianna Piatakova, Ingrid Poláková, Jana Šmahelová, Shweta Dilip Johari, Jaroslav Nunvář, Michal Šmahel
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/1392674

Increased Expression of LYNX1 in Ovarian Serous Cystadenocarcinoma Predicts Poor Prognosis
Cited by: 3
Author(s): Hui Liu, Ao Wang, Yu Ma
Software Mentions: 2
Published: about 5 years ago

10.1186/s12934-015-0355-9

Genetic and nutrient modulation of acetyl-CoA levels in Synechocystis for n-butanol production
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Author(s): Josefine Anfelt, Danuta Kaczmarzyk, Kiyan Shabestary, Björn Renberg, Johan Rockberg, Jens Nielsen, Mathias Uhlén, Elton P. Hudson
Software Mentions: 2
Published: about 10 years ago

10.3389/fendo.2020.621944

Quinolinate Phosphoribosyltransferase Promotes Invasiveness of Breast Cancer Through Myosin Light Chain Phosphorylation
Cited by: 17
Author(s): Chien‐Liang Liu, Shih‐Ping Cheng, Ming‐Jen Chen, Chin-Ho Lin, Shan-Na Chen, Yi-Hue Kuo, Yuan‐Ching Chang
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12876-018-0927-3

Helicobacter pylori infections in Ethiopia; prevalence and associated factors: a systematic review and meta-analysis
Cited by: 30
Author(s): Addisu Melese, Chalachew Genet, Balew Zeleke, Tesfaye Andualem
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0211095

Mapping and quantification of ferruginous outcrop savannas in the Brazilian Amazon: A challenge for biodiversity conservation
Cited by: 34
Author(s): Pedro Walfir M. Souza-Filho, Tereza Cristina Giannini, Rodolfo Jaffé, Ana María Giulietti, Diogo C. Santos, Wilson R. Nascimento, José Tasso Felix Guimarães, Marlene Furtado da Costa, Vera Lúcia Imperatriz-Fonseca, José Oswaldo Siqueira
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0087225

Nanoscale Effects of Ethanol and Naltrexone on Protein Organization in the Plasma Membrane Studied by Photoactivated Localization Microscopy (PALM)
Cited by: 24
Author(s): Steven J. Tobin, Eliedonna E. Cacao, Daniel Wing Wo Hong, Lars Terenius, Vladana Vukojević, Tijana Jovanovic-Talisman
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12934-017-0824-4

Metabolic engineering of Synechococcus elongatus PCC 7942 for improvement of 1,3-propanediol and glycerol production based on in silico simulation of metabolic flux distribution
Cited by: 29
Author(s): Yasutaka Hirokawa, Shingo Matsuo, Hiroyuki Hamada, Fumio Mizutani, Taizo Hanai
Software Mentions: 2
Published: about 8 years ago

10.1186/s12934-018-1052-2

Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains
Cited by: 51
Author(s): Ilaria Massaiu, Lorenzo Pasotti, Nikolaus Sonnenschein, Erlinda Rama, Matteo Cavaletti, Paolo Magni, Cinzia Calvio, Markus J. Herrgård
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmolb.2021.673044

Altered Glycosylation in the Aging Heart
Cited by: 6
Author(s): Patricia Franzka, Lynn Krüger, Mona K Schurig, Maja Olecka, Steve Hoffmann, Véronique Blanchard, Christian A. Hübner
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0023525

OASIS: Online Application for the Survival Analysis of Lifespan Assays Performed in Aging Research
Cited by: 256
Author(s): Jae-Seong Yang, Hyun Jun Nam, Mihwa Seo, Seong Kyu Han, Y. S. Choi, Hong Gil Nam, Seung-Jae Lee, Sanguk Kim
Software Mentions: 2
Published: over 14 years ago

10.1186/s12863-020-00853-3

Sex determination in the GIFT strain of tilapia is controlled by a locus in linkage group 23
Cited by: 25
Author(s): Khanam Taslima, Stefanie Wehner, John B. Taggart, Hugues de Verdal, John A. H. Benzie, Michaël Bekaert, Brendan McAndrew, David J. Penman
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2021.727481

Characterization of METTL7B to Evaluate TME and Predict Prognosis by Integrative Analysis of Multi-Omics Data in Glioma
Cited by: 8
Author(s): Xiaochuan Chen, Chao Li, Ying Liu, Shihong Wu, Wei Liu, Ting Lin, Miaomiao Li, Youliang Weng, Wanzun Lin, Sufang Qiu
Software Mentions: 2
Published: about 4 years ago

10.3390/cancers11121880

Delineation of Tumor Migration Paths by Using a Bayesian Biogeographic Approach
Cited by: 6
Author(s): Antonia Chroni, Tracy Vu, Sayaka Miura, Sudhir Kumar
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0065324

To Clone or Not to Clone? Induced Pluripotent Stem Cells Can Be Generated in Bulk Culture
Cited by: 34
Author(s): Charlotte A. Willmann, Hatim Hemeda, Lisa A. Pieper, Michael Lenz, Jie Qin, Sylvia Joussen, Stephanie Sontag, Paul Wanek, Bernd Denecke, H Schüler, Martin Zenke, Wolfgang Wagner
Software Mentions: 2
Published: over 12 years ago

10.18632/aging.103486

Characterization of aberrant pathways activation and immune microenviroment of BK virus associated nephropathy
Cited by: 5
Author(s): Yongguang Liu, Song Zhou, Jianmin Hu, Wentao Xu, Ding Liu, Jun Liu, Guorong Liao, Zhiqiang Guo, Yuzhu Li, Siqiang Yang, Shichao Li, Hua Chen, Ying Guo, Ming Li, Li‐pei Fan, Liuyang Li, Anqi Lin, Ming Zhao
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0157893

Draft Genomes of Anopheles cracens and Anopheles maculatus: Comparison of Simian Malaria and Human Malaria Vectors in Peninsular Malaysia
Cited by: 7
Author(s): Yee Ling Lau, Wenn-Chyau Lee, Junhui Chen, Zhisheng Zhong, Jianbo Jian, Amirah Amir, Fei Wen Cheong, Jia-Siang Sum, Mun-Yik Fong
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-017-3786-3

Co-expressed Pathways DataBase for Tomato: a database to predict pathways relevant to a query gene
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Author(s): Takafumi Narise, Nozomu Sakurai, Takeshi Obayashi, Hiroyuki Ohta, Daisuke Shibata
Software Mentions: 2
Published: over 8 years ago

10.1038/cddis.2014.542

The malignant phenotype in breast cancer is driven by eIF4A1-mediated changes in the translational landscape
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Author(s): A. Modelska, Ernest Turro, Robert B. Russell, J Beaton, Thomas Sbarrato, Keith A. Spriggs, Jodi Miller, Stefan Gräf, Elena Provenzano, Fiona M. Blows, Paul D.P. Pharoah, Carlos Caldas, John Le Quesne
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2164-14-533

Correlated mRNAs and miRNAs from co-expression and regulatory networks affect porcine muscle and finally meat properties
Cited by: 41
Author(s): Siriluck Ponsuksili, Yang Du, Frieder Hadlich, Puntita Siengdee, Eduard Muráni, Manfred Schwerin, Klaus Wimmers
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2021.626759

Phylogenetic Revision of the Genus Aliivibrio: Intra- and Inter-Species Variance Among Clusters Suggest a Wider Diversity of Species
Cited by: 6
Author(s): Terje Klemetsen, Christian Karlsen, Nils Peder Willassen
Software Mentions: 2
Published: almost 5 years ago

10.3390/biom11040579

Chemoinformatics Studies on a Series of Imidazoles as Cruzain Inhibitors
Cited by: 5
Author(s): Alex R. Medeiros, Leonardo L. G. Ferreira, Márcia Regina de Souza, Celso de Oliveira Rezende, Rocio Marisol Espinoza Chávez, Luiz C. Dias, Adriano D. Andricopulo
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2021.623739

Probiotics Bacillus licheniformis Improves Intestinal Health of Subclinical Necrotic Enteritis-Challenged Broilers
Cited by: 29
Author(s): Liugang Kan, Fangshen Guo, Yan Liu, Van Hieu Pham, Yuming Guo, Weihong Zhong
Software Mentions: 2
Published: over 4 years ago

10.3389/fcell.2021.606106

Identification of Biomarkers Related to CD8+ T Cell Infiltration With Gene Co-expression Network in Lung Squamous Cell Carcinoma
Cited by: 10
Author(s): Min Tang, Yukun Li, Xianyu Luo, Jianru Xiao, Juan Wang, Xiaofeng Zeng, Qi-hao Hu, Xiaoyan Chen, Sijie Tan, Jun Hu
Software Mentions: 2
Published: over 4 years ago

10.1186/s13075-017-1224-1

Blood chemokine profile in untreated early rheumatoid arthritis: CXCL10 as a disease activity marker
Cited by: 53
Author(s): Jayesh M. Pandya, Anna‐Carin Lundell, Kerstin Andersson, Inger Nordström, Elke Theander, Anna Rudin
Software Mentions: 2
Published: almost 9 years ago

Projects: pypi: analysis

Science Score: 90/100

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Papers Mentioning analysis 2,036