10.1186/s12929-021-00751-5

AUY922 induces retinal toxicity through attenuating TRPM1
Cited by: 6
Author(s): Che-Hung Shen, Chi-Hsun Hsieh, Kuan-Ying Jiang, Chih‐Yu Lin, Nai‐Jung Chiang, Tingwei Li, Chen‐Tung Yen, Wan-Ju Chen, Daw-Yang Hwang, Li-Tzong Chen
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0202751

Long length of stay at the emergency department is mostly caused by organisational factors outside the influence of the emergency department: A root cause analysis
Cited by: 42
Author(s): Babiche E. J. M. Driesen, Bauke H.G. Van Riet, Lisa Verkerk, H. Jaap Bonjer, Hanneke Merten, Prabath W.B. Nanayakkara
Software Mentions: 2
Published: about 8 years ago

10.3390/v10110649

Characterizing the Different Effects of Zika Virus Infection in Placenta and Microglia Cells
Cited by: 15
Author(s): Maria del Pilar Martinez Viedma, Brett E. Pickett
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms21228730

Network Analysis of Gut Microbiome and Metabolome to Discover Microbiota-Linked Biomarkers in Patients Affected by Non-Small Cell Lung Cancer
Cited by: 60
Author(s): Pamela Vernocchi, Tommaso Gili, Federica Conte, Federica Del Chierico, Giorgia Conta, Alfredo Miccheli, Andrea Botticelli, Paola Paci, Guido Caldarelli, Marianna Nuti, Paolo Marchetti, Lorenza Putignani
Software Mentions: 2
Published: almost 6 years ago

10.1186/1423-0127-17-S1-S38

A maternal low protein diet has pronounced effects on mitochondrial gene expression in offspring liver and skeletal muscle; protective effect of taurine
Cited by: 40
Author(s): Ole Hartvig Mortensen, Hanne Olsen, Lis Frandsen, Peter E. Nielsen, Finn Cilius Nielsen, Niels Grunnet, Bjørn Quistorff
Software Mentions: 2
Published: almost 17 years ago

10.1074/jbc.RA118.003280

A dynamic transcriptomic atlas of cytokine-induced killer cells
Cited by: 7
Author(s): Mingyao Meng, Lin Li, Ruhong Li, Wenju Wang, Yang Chen, Youhua Xie, Rui Han, Kai Zhu, Wenwen Huang, Lili Yang, Shuo Li, Jianlin Shi, Wenyong Tan, Hui Gao, Yiyi Zhao, Yang Li, Tan Jinquan, Zongliu Hou
Software Mentions: 2
Published: almost 8 years ago

10.4172/1948-593X.1000120

Systemic Transcriptional Alterations of Innate and Adaptive Immune Signaling Pathways in Atherosclerosis, Ischemia Stroke, and Myocardial Infarction
Cited by: 11
Author(s): Taura L. Barr, Reynal L VanGilder, Ryan Seiberg, Ashely Petrone, Paul D. Chantler, Chiang-Ching Huang
Software Mentions: 2
Published: almost 12 years ago

10.3390/ijms22020712

An Integrative Transcriptomic Analysis of Systemic Juvenile Idiopathic Arthritis for Identifying Potential Genetic Markers and Drug Candidates
Cited by: 3
Author(s): Daeun Kim, Jaeseung Song, Sora Lee, Junghyun Jung, Wonhee Jang
Software Mentions: 2
Published: almost 6 years ago

10.1111/1365-2656.12630

Analysing animal social network dynamics: the potential of stochastic actor-oriented models
Cited by: 39
Author(s): David N. Fisher, Amiyaal Ilany, Matthew J. Silk, Tom Tregenza
Software Mentions: 2
Published: over 9 years ago

10.1002/cam4.3400

Immune‐related signature predicts the prognosis and immunotherapy benefit in bladder cancer
Cited by: 29
Author(s): Yejinpeng Wang, Changhong Liang, Mengxue Yu, Yayun Fang, Kaiyu Qian, Gang Wang, Lingao Ju, Yu Xiao, Xinghuan Wang
Software Mentions: 2
Published: about 6 years ago

10.18632/aging.103174

Sirt1 gene confers Adriamycin resistance in DLBCL via activating the PCG-1α mitochondrial metabolic pathway
Cited by: 9
Author(s): Zhen Zhou, Dan Ma, Peifan Li, Ping Wang, Ping Liu, Danna Wei, Jun Wang, Qi Zhong, Qin Fang, Jishi Wang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0177513

An integrative analysis of tissue-specific transcriptomic and metabolomic responses to short-term dietary methionine restriction in mice
Cited by: 30
Author(s): Sujoy Ghosh, Laura A. Forney, Desiree Wanders, Kirsten P. Stone, Thomas W. Gettys
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-017-3786-3

Co-expressed Pathways DataBase for Tomato: a database to predict pathways relevant to a query gene
Cited by: 9
Author(s): Takafumi Narise, Nozomu Sakurai, Takeshi Obayashi, Hiroyuki Ohta, Daisuke Shibata
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms22052452

A Systems Biology Approach to Investigating the Interaction between Serotonin Synthesis by Tryptophan Hydroxylase and the Metabolic Homeostasis
Cited by: 11
Author(s): Suhyeon Park, Yumin Kim, Jibeom Lee, Jeong Yun Lee, Hail Kim, Sunjae Lee, Chang‐Myung Oh
Software Mentions: 2
Published: over 5 years ago

10.1172/jci.insight.137926

Human Tregs at the materno-fetal interface show site-specific adaptation reminiscent of tumor Tregs
Cited by: 19
Author(s): Judith Wienke, Laura Brouwers, Leone M. van der Burg, Michal Mokrý, Rianne C. Scholman, Floris Groenendaal, Bas B. van Rijn, Femke van Wijk
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms22073489

CRISPR-Cas9–Mediated TIM3 Knockout in Human Natural Killer Cells Enhances Growth Inhibitory Effects on Human Glioma Cells
Cited by: 30
Author(s): Takayuki Morimoto, Tsutomu Nakazawa, Ryosuke Matsuda, Fusanori Nishimura, Mitsutoshi Nakamura, Shuichi Yamada, Ichiro Nakagawa, Young-Soo Park, Takahiro Tsujimura, Hiroyuki Nakase
Software Mentions: 2
Published: over 5 years ago

10.1002/jbm4.10195

Body Weight and Body Mass Index Influence Bone Mineral Density in Late Adolescence in a Two‐Year Follow‐Up Study. The Tromsø Study: Fit Futures
Cited by: 2
Author(s): Ole Andreas Nilsen, Luai A. Ahmed, Anne Winther, Tore Christoffersen, Gyrd Thrane, Elin Kristin Evensen, Anne‐Sofie Furberg, Guri Grimnes, Elaine Dennison, Nina Emaus
Software Mentions: 2
Published: about 7 years ago

10.1186/s12889-021-10283-0

Examining potential effects of non-occupational post-exposure prophylaxis (nPEP) on sexual behaviors of Chinese men who have sex with men: a cross-sectional study
Cited by: 0
Author(s): Haochu Li, Ran Wei, Jason J. Ong, Eun Sook Kim, Traci L. Weinstein, Xiaofu Ning, Wei Ma
Software Mentions: 2
Published: over 5 years ago

10.1186/1748-5908-3-49

The intellectual structure and substance of the knowledge utilization field: A longitudinal author co-citation analysis, 1945 to 2004
Cited by: 119
Author(s): Carole A. Estabrooks, Linda Derksen, Connie Winther, John N. Lavis, Shannon D. Scott, Lars Wallin, Joanne Profetto‐McGrath
Software Mentions: 2
Published: almost 18 years ago

10.1038/s41438-021-00537-8

Comparative transcriptomic analysis highlights contrasting levels of resistance of Vitis vinifera and Vitis amurensis to Botrytis cinerea
Cited by: 10
Author(s): Ran Wan, Chunfang Guo, Xiaoqing Hou, Yanxun Zhu, Min Gao, Xiaoyan Hu, Songlin Zhang, Chen Jiao, Rongrong Guo, Zhi Li, Xiping Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s41065-020-00127-z

Investigation of the gene co-expression network and hub genes associated with acute mountain sickness
Cited by: 3
Author(s): Yue Cune Chang, Jiange He, Jiqiang Tang, Kai Chen, Zhenguo Wang, Qun Xia, Hai Li
Software Mentions: 2
Published: over 6 years ago

10.18632/aging.103486

Characterization of aberrant pathways activation and immune microenviroment of BK virus associated nephropathy
Cited by: 5
Author(s): Yongguang Liu, Song Zhou, Jianmin Hu, Wentao Xu, Ding Liu, Jun Liu, Guorong Liao, Zhiqiang Guo, Yuzhu Li, Siqiang Yang, Shichao Li, Hua Chen, Ying Guo, Ming Li, Li‐pei Fan, Liuyang Li, Anqi Lin, Ming Zhao
Software Mentions: 2
Published: over 6 years ago

10.1002/hsr2.202

A prognostic risk model based on immune‐related genes predicts overall survival of patients with hepatocellular carcinoma
Cited by: 2
Author(s): Banglun Pan, Lin Liu, Wei Li
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13075-017-1224-1

Blood chemokine profile in untreated early rheumatoid arthritis: CXCL10 as a disease activity marker
Cited by: 53
Author(s): Jayesh M. Pandya, Anna‐Carin Lundell, Kerstin Andersson, Inger Nordström, Elke Theander, Anna Rudin
Software Mentions: 2
Published: over 9 years ago

10.1093/gigascience/giy163

A critical comparison of technologies for a plant genome sequencing project
Cited by: 39
Author(s): Pirita Paajanen, George Kettleborough, Elena López‐Girona, Michael Giolai, Darren Heavens, David Baker, Ashleigh Lister, Fiorella Cugliandolo, Gail Wilde, Ingo Hein, Iain C. Macaulay, Glenn J. Bryan, Matt Clark
Software Mentions: 2
Published: almost 8 years ago

10.1186/1755-8794-3-44

Molecular signature of response and potential pathways related to resistance to the HSP90 inhibitor, 17AAG, in breast cancer
Cited by: 26
Author(s): Magdalena Zając, Gonzalo Vázquez Gómez, Javier Benı́tez, Beatriz Martı́nez-Delgado
Software Mentions: 2
Published: about 16 years ago

10.1155/2021/5587441

Identification of Molecular Characteristics and New Prognostic Targets for Thymoma by Multiomics Analysis
Cited by: 4
Author(s): Dazhong Liu, Pengfei Zhang, Jichun Zhao, Lei Yang, Wei Wang
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22189957

Genome-Wide Identification and Analyses of Drought/Salt-Responsive Cytochrome P450 Genes in Medicago truncatula
Cited by: 8
Author(s): Xia Yin, Yang Jiao, Lin Ma, Yan Su, Yongzhen Pang
Software Mentions: 2
Published: about 5 years ago

10.1038/s41419-020-2482-4

The H2B ubiquitin-protein ligase RNF40 is required for somatic cell reprogramming
Cited by: 11
Author(s): Wanhua Xie, Michaela Miehe, Sandra D. Laufer, Steven A. Johnsen
Software Mentions: 2
Published: over 6 years ago

10.1093/gigascience/giy136

Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data
Cited by: 25
Author(s): Fadhl Alakwaa, Breck Yunits, Sijia Huang, Hassam Alhajaji, Lana X. Garmire
Software Mentions: 2
Published: almost 8 years ago

10.15252/msb.20188202

Identification of an oncogenic network with prognostic and therapeutic value in prostate cancer
Cited by: 23
Author(s): Fiorella Magani, Eric R. Bray, María Julia Martínez, Ning Zhao, Valeria A. Copello, Laine M. Heidman, Stephanie Peacock, David J. Wiley, Gennaro D’Urso, Kerry L. Burnstein
Software Mentions: 2
Published: about 8 years ago

10.1186/s40170-019-0202-2

Tissue of origin dictates GOT1 dependence and confers synthetic lethality to radiotherapy
Cited by: 28
Author(s): Barbara Scott Nelson, Lin Lin, Daniel M. Kremer, Cristovão M. Sousa, Cecilia Cotta‐Ramusino, Amy L. Myers, Johanna Ramos, Ting Gao, Ilya Kovalenko, Kari Wilder-Romans, Joseph Dresser, Mary A. Davis, Ho‐Joon Lee, Zeribe C. Nwosu, Scott Campit, Oksana Mashadova, Brandon Nicolay, Zachary P. Tolstyka, Christopher J. Halbrook, Sriram Chandrasekaran, John M. Asara, Howard C. Crawford, Lewis C. Cantley, Alec C. Kimmelman, Daniel R. Wahl, Costas A. Lyssiotis
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-021-07709-9

Dual species dynamic transcripts reveal the interaction mechanisms between Chrysanthemum morifolium and Alternaria alternata
Cited by: 5
Author(s): Lina Liu, Fadi Chen, Sumei Chen, Weimin Fang, Ye Liu, Zhiyong Guan
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-016-3188-y

Network analysis of psoriasis reveals biological pathways and roles for coding and long non-coding RNAs
Cited by: 63
Author(s): Richard Ahn, Rashmi Gupta, Kevin Lai, Nitin Chopra, Sarah T. Arron, Wilson Liao
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0055137

Construction and Analysis of the Model of Energy Metabolism in E. coli
Cited by: 4
Author(s): Zixiang Xu, Xiao Sun, Jibin Sun
Software Mentions: 2
Published: over 13 years ago

10.1186/gm519

miR-638 regulates gene expression networks associated with emphysematous lung destruction
Cited by: 63
Author(s): Stephanie A. Christenson, Corry‐Anke Brandsma, Joshua D. Campbell, Darryl A. Knight, Dmitri V. Pechkovsky, James C. Hogg, Wim Timens, Dirkje S. Postma, Marc E. Lenburg, Avrum Spira
Software Mentions: 2
Published: almost 14 years ago

10.3390/antiox10060949

The Long-Term DEHP Exposure Confers Multidrug Resistance of Triple-Negative Breast Cancer Cells through ABC Transporters and Intracellular ROS
Cited by: 13
Author(s): Mahendra Jadhao, Eing‐Mei Tsai, Ho-Chun Yang, Yih-Fung Chen, Shih‐Shin Liang, Tsu‐Nai Wang, Yen-Ni Teng, Hurng‐Wern Huang, Lifang Wang, Chien‐Chih Chiu
Software Mentions: 2
Published: over 5 years ago

10.3390/metabo10020059

TGF-ß1 Induces Changes in the Energy Metabolism of White Adipose Tissue-Derived Human Adult Mesenchymal Stem/Stromal Cells In Vitro
Cited by: 2
Author(s): Olga Hahn, Lena-Christin Ingwersen, Abdel-Rahman Soliman, Mohamed Hamed, Georg Fuellen, Markus Wolfien, Julia Scheel, Olaf Wolkenhauer, Dirk Koczan, Günter Kamp, Kirsten Peters
Software Mentions: 2
Published: over 6 years ago

10.1186/s13059-021-02291-5

MEDALT: single-cell copy number lineage tracing enabling gene discovery
Cited by: 14
Author(s): Fang Wang, Qihan Wang, Vakul Mohanty, Shaoheng Liang, Jun Dou, Jiaying Han, Darlan Conterno Minussi, Ruli Gao, Ding Li, Nicholas E. Navin, Ken Chen
Software Mentions: 2
Published: over 5 years ago

10.1038/s41380-018-0255-6

Integrative approach to sporadic Alzheimer’s disease: deficiency of TYROBP in cerebral Aβ amyloidosis mouse normalizes clinical phenotype and complement subnetwork molecular pathology without reducing Aβ burden
Cited by: 52
Author(s): Jean‐Vianney Haure‐Mirande, Minghui Wang, Mickaël Audrain, Tomas Fanutza, Soong Ho Kim, Szilvia Heja, Ben Readhead, Joel T. Dudley, Robert D. Blitzer, Eric E. Schadt, Bin Zhang, Sam Gandy, Michelle E. Ehrlich
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0088896

Long-Term Effects of Gestational Nicotine Exposure and Food-Restriction on Gene Expression in the Striatum of Adolescent Rats
Cited by: 5
Author(s): Nicholas E. Ilott, Tomasz Schneider, Jonathan Mill, Leonard C. Schalkwyk, Giovana Brolese, Lisiane Bizarro, I. P. Stolerman, Emma Dempster, Philip Asherson
Software Mentions: 2
Published: over 12 years ago

10.1002/1878-0261.12871

Interaction of transcription factor AP‐2 gamma with proto‐oncogene PELP1 promotes tumorigenesis by enhancing RET signaling
Cited by: 13
Author(s): Junhao Liu, Zexuan Liu, Mengxing Li, Weiwei Tang, Uday P. Pratap, Yiliao Luo, Kristin A. Altwegg, Xiaonan Li, Yi Zou, Hong Zhu, Gangadhara R. Sareddy, Suryavathi Viswanadhapalli, Ratna K. Vadlamudi
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-019-6261-5

Identification of key genes and regulators associated with carotenoid metabolism in apricot (Prunus armeniaca) fruit using weighted gene coexpression network analysis
Cited by: 25
Author(s): Lina Zhang, Qiuyun Zhang, Wenhui Li, Shikui Zhang, Wanpeng Xi
Software Mentions: 2
Published: almost 7 years ago

10.1002/1878-0261.12561

miRNA expression changes during the course of neoadjuvant bevacizumab and chemotherapy treatment in breast cancer
Cited by: 27
Author(s): Evita M. Lindholm, Miriam Ragle Aure, Mads H. Haugen, Kristine Kleivi Sahlberg, Vessela N. Kristensen, Daniel J. H. Nebdal, Anne‐Lise Børresen‐Dale, Ole Christian Lingjærde, Olav Engebraaten
Software Mentions: 2
Published: about 7 years ago

10.1016/j.isci.2020.101497

Genome of Tetraploid Fish Schizothorax o'connori Provides Insights into Early Re-diploidization and High-Altitude Adaptation
Cited by: 23
Author(s): Shijun Xiao, Zhenbo Mou, Dingding Fan, Zhou He, Ming Zou, Yu Zeng, Chaowei Zhou, Ruibin Yang, Jiaqi Liu, Shilin Zhu, Yajuan Li, Yanchao Liu, Fei Liu, Wanliang Wang, Benhe Zeng, Hong Li, Di Wang, Haiping Li
Software Mentions: 2
Published: about 6 years ago

10.1155/2021/5511598

The Gene Coexpression Analysis Identifies Functional Modules Dynamically Changed After Traumatic Brain Injury
Cited by: 3
Author(s): Zhi-hui Zhao, Dong-po Wei, Ruizhe Zheng, Tinghua Peng, Xiang Xiao, Fusheng Li
Software Mentions: 2
Published: over 5 years ago

10.1002/1878-0261.12014

Gene expression panel predicts metastatic‐lethal prostate cancer outcomes in men diagnosed with clinically localized prostate cancer
Cited by: 22
Author(s): Rohina Rubicz, Shanshan Zhao, Jonathan L. Wright, Ilsa M. Coleman, Catherine S. Grasso, Milan S. Geybels, Amy Leonardson, Suzanne Kolb, Craig April, Marina Bibikova, Dean A. Troyer, Raymond S. Lance, Daniel W. Lin, Elaine A. Ostrander, Peter S. Nelson, Jie Fan, Ziding Feng, Janet L. Stanford
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0063644

Identification of Altered Metabolic Pathways in Plasma and CSF in Mild Cognitive Impairment and Alzheimer’s Disease Using Metabolomics
Cited by: 338
Author(s): Eugenia Trushina, Tumpa Dutta, Xuan Mai T. Persson, Michelle M. Mielke, Ronald C. Petersen
Software Mentions: 2
Published: over 13 years ago

10.1111/acel.13229

Underlying features of epigenetic aging clocks in vivo and in vitro
Cited by: 84
Author(s): Zuyun Liu, Diana Leung, Kyra Thrush, Wei Zhao, Scott Ratliff, Toshiko Tanaka, Lauren Schmitz, Jennifer A. Smith, Luigi Ferrucci, Morgan E. Levine
Software Mentions: 2
Published: about 6 years ago

10.18632/oncotarget.9626

Transcriptomic and proteomic analysis of mouse radiation-induced acute myeloid leukaemia (AML)
Cited by: 6
Author(s): Christophe Badie, Agnieszka Blachowicz, Žarko Barjaktarović, Rosemary Finnon, Arlette Michaux, Hakan Sarioglu, Natalie Brown, Grainne Manning, Mohammed Abderrafi Benotmane, Soile Tapio, Joanna Polańska, Simon Bouffler
Software Mentions: 2
Published: over 10 years ago

10.1002/1878-0261.12349

C1q/ <scp>TNF</scp> ‐related peptide 8 ( <scp>CTRP</scp> 8) promotes temozolomide resistance in human glioblastoma
Cited by: 16
Author(s): Thatchawan Thanasupawat, Aleksandra Głogowska, Maxwell Burg, Jerry Krcek, Jason Beiko, Marshall Pitz, Guojun Zhang, Sabine Hombach‐Klonisch, Thomas Klonisch
Software Mentions: 2
Published: about 8 years ago

10.1186/s12877-021-02148-3

A study on prospective associations between adiposity and 7-year changes in movement behaviors among older women based on compositional data analysis
Cited by: 2
Author(s): Jana Pelclová, Nikola Štefelová, Tim Olds, Dorothea Dumuid, Karel Hron, Sébastien Chastin, Željko Pedišić
Software Mentions: 2
Published: over 5 years ago

10.1155/2021/5511507

The Identification of Childhood Asthma Progression-Related lncRNAs and mRNAs Suitable as Biomarkers Using Weighted Gene Coexpression Network Analysis
Cited by: 4
Author(s): Min Hao, Jinling Zan
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0231021

Exploitation of local and global information in predictive processing
Cited by: 1
Author(s): Daniel S. Kluger, Nico Broers, Marlen A. Roehe, Moritz F. Wurm, Niko A. Busch, Ricarda Ines Schubotz
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/3962146

TPPP3 Associated with Prognosis and Immune Infiltrates in Head and Neck Squamous Carcinoma
Cited by: 9
Author(s): Zheng Yang, Xiaohong Li, Jingyu Li, Qingde Su, Yuling Qiu, Zunni Zhang, Liqian Zhang, Wuning Mo
Software Mentions: 2
Published: about 6 years ago

10.3390/genes12091303

Yeast as a Tool to Understand the Significance of Human Disease-Associated Gene Variants
Cited by: 10
Author(s): Tiziana Cervelli, Alvaro Galli
Software Mentions: 2
Published: about 5 years ago

10.1186/s12859-016-0948-2

Structure-based Markov random field model for representing evolutionary constraints on functional sites
Cited by: 6
Author(s): Chanseok Jeong, Dongsup Kim
Software Mentions: 2
Published: over 10 years ago

10.3390/metabo10080316

Metabolite Profiles of the Relationship between Body Mass Index (BMI) Milestones and Metabolic Risk during Early Adolescence
Cited by: 3
Author(s): Wei Perng, Mohammad L. Rahman, Izzuddin M. Aris, Gregory A. Michelotti, Joanne E. Sordillo, Jorge E. Chavarro, Emily Oken, Marie‐France Hivert
Software Mentions: 2
Published: about 6 years ago

10.18632/oncotarget.18978

EB1 protein alteration characterizes sporadic but not ulcerative colitis associated colorectal cancer
Cited by: 6
Author(s): Timo Gemoll, Sophie L. Kollbeck, Karl Karstens, Gia G. Hò, Sonja Hartwig, Sarah Strohkamp, Katharina Schillo, Christoph Thorns, Martina Oberländer, Kathrin Kalies, Stefan Lehr, Jens K. Habermann
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0106050

Tau Overexpression Impacts a Neuroinflammation Gene Expression Network Perturbed in Alzheimer’s Disease
Cited by: 87
Author(s): Paul D. Wes, Amy Easton, John P. Corradi, Donna M. Barten, Nino Devidze, Lynn B. DeCarr, Amy Truong, Aiqing He, Nestor X. Barrezueta, Craig Polson, Clotilde Bourin, Marianne E. Flynn, Stefanie Keenan, Regina Lidge, Jere E. Meredith, JoAnne E. Natale, Sethu Sankaranarayanan, Gregory Cadelina, Charlie Albright, Angela Cacace
Software Mentions: 2
Published: about 12 years ago

10.18632/oncotarget.20537

Identification of candidate genes related to pancreatic cancer based on analysis of gene co-expression and protein-protein interaction network
Cited by: 10
Author(s): Tiejun Zhang, Xiaojuan Wang, Z.Q. Yue
Software Mentions: 2
Published: about 9 years ago

10.3390/genes11080883

Exploring the lncRNAs Related to Skeletal Muscle Fiber Types and Meat Quality Traits in Pigs
Cited by: 25
Author(s): Rongyang Li, Bojiang Li, Aiwen Jiang, Yan Cao, Liming Hou, Zengkai Zhang, Xiying Zhang, Kee‐Hong Kim, Wangjun Wu
Software Mentions: 2
Published: about 6 years ago

10.1186/s12862-016-0733-x

Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment
Cited by: 61
Author(s): Tobias Großkopf, Jessika Consuegra, Joël Gaffé, John C. Willison, Richard E. Lenski, Orkun S. Soyer, Dominique Schneider
Software Mentions: 2
Published: about 10 years ago

10.18632/oncotarget.21546

Identification of hub genes related to silicone-induced immune response in rats
Cited by: 5
Author(s): Xiaolu Huang, Yiwen Zhou, Wenhui Liu, Haizhou Li, Xiao Liang, Rui Jin, Hengyu Du, Jianjun He, Bangda Chai, Ran Duan, Qingfeng Li
Software Mentions: 2
Published: about 9 years ago

10.18632/oncotarget.22009

The WAVE3-YB1 interaction regulates cancer stem cells activity in breast cancer
Cited by: 21
Author(s): Kamila Błędzka, Barbara J. Schiemann, William P. Schiemann, Paul L. Fox, Edward F. Plow, Khalid Sossey‐Alaoui
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.22402

NMR-based metabolomic techniques identify potential urinary biomarkers for early colorectal cancer detection
Cited by: 41
Author(s): Zhening Wang, Yan Lin, Jiahao Liang, Yao Huang, Changchun Ma, Xingmu Liu, Ju-Rong Yang
Software Mentions: 2
Published: almost 9 years ago

10.3390/metabo11090606

Next-Generation Genome-Scale Metabolic Modeling through Integration of Regulatory Mechanisms
Cited by: 15
Author(s): Carolina H Chung, Dawei Lin, Alec Eames, Sriram Chandrasekaran
Software Mentions: 2
Published: about 5 years ago

10.18632/oncotarget.23254

Long non-coding RNA <i>GAS5</i> and <i>ZFAS1</i> are prognostic markers involved in translation targeted by <i>miR-940</i> in prostate cancer
Cited by: 30
Author(s): Xin Chen, Chao Yang, Shengli Xie, Edwin Cheung
Software Mentions: 2
Published: almost 9 years ago

10.1155/2020/1392674

Increased Expression of LYNX1 in Ovarian Serous Cystadenocarcinoma Predicts Poor Prognosis
Cited by: 3
Author(s): Hui Liu, Ao Wang, Yu Ma
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.molmet.2020.101094

Ozone-induced fetal growth restriction in rats is associated with sexually dimorphic placental and fetal metabolic adaptation
Cited by: 9
Author(s): Colette N. Miller, Janice A. Dye, Andres R. Henriquez, Erica Stewart, Katelyn S. Lavrich, Gleta Carswell, Hongzu Ren, Danielle L. Freeborn, Samantha J. Snow, Mette C. Schladweiler, Judy H. Richards, Prasada Rao S. Kodavanti, Anna Fisher, Brian N. Chorley, Urmila P. Kodavanti
Software Mentions: 2
Published: almost 6 years ago

10.1111/cpr.13049

Retinoic acid induces NELFA‐mediated 2C‐like state of mouse embryonic stem cells associates with epigenetic modifications and metabolic processes in chemically defined media
Cited by: 10
Author(s): Yanqiu Wang, Na Qin, Xihe Li, Wee-Wei Tee, Baojiang Wu, Siqin Bao
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.24047

Molecular characterization of breast cancer cell response to metabolic drugs
Cited by: 22
Author(s): Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, Jorge M. Arevalillo, Mariana Díaz-Almirón, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Hilario Navarro, Rosa Aras-López, Irene Dapía, Rocío López-Vacas, Paolo Nanni, Sara Llorente-Armijo, Pedro Arias, Alberto M. Borobia, Paloma Maı́n, Jaime Feliú, Enrique Espinosa, Juan Ángel Fresno Vara
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12876-018-0927-3

Helicobacter pylori infections in Ethiopia; prevalence and associated factors: a systematic review and meta-analysis
Cited by: 30
Author(s): Addisu Melese, Chalachew Genet, Balew Zeleke, Tesfaye Andualem
Software Mentions: 2
Published: almost 8 years ago

10.1007/s00401-020-02178-y

SFPQ and Tau: critical factors contributing to rapid progression of Alzheimer’s disease
Cited by: 41
Author(s): Neelam Younas, Saima Zafar, Mohsin Shafiq, Aneeqa Noor, Anna Siegert, Amandeep Singh Arora, А. П. Галкин, Ayesha Zafar, Mathias Schmitz, Christine Stadelmann, Olivier Andréoletti, Isidre Ferrer, Inga Zerr
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0211095

Mapping and quantification of ferruginous outcrop savannas in the Brazilian Amazon: A challenge for biodiversity conservation
Cited by: 34
Author(s): Pedro Walfir M. Souza-Filho, Tereza Cristina Giannini, Rodolfo Jaffé, Ana María Giulietti, Diogo C. Santos, Wilson R. Nascimento, José Tasso Felix Guimarães, Marlene Furtado da Costa, Vera Lúcia Imperatriz-Fonseca, José Oswaldo Siqueira
Software Mentions: 2
Published: over 7 years ago

10.1002/cjp2.191

Overactivation of the <scp>IGF</scp> signalling pathway in osteosarcoma: a potential therapeutic target?
Cited by: 5
Author(s): Baptiste Ameline, Michal Kováč, Michaela Nathrath, Maxim Barenboim, Olaf Witt, Andreas H. Krieg, Daniel Baumhoer
Software Mentions: 2
Published: almost 6 years ago

10.3390/jpm10040282

Digital Phenotyping and Patient-Generated Health Data for Outcome Measurement in Surgical Care: A Scoping Review
Cited by: 16
Author(s): Prakash Jayakumar, Eugenia Lin, Vincent P Galea, Abraham J Mathew, Nikhil Panda, Imelda Vetter, Alex B. Haynes
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0087225

Nanoscale Effects of Ethanol and Naltrexone on Protein Organization in the Plasma Membrane Studied by Photoactivated Localization Microscopy (PALM)
Cited by: 24
Author(s): Steven J. Tobin, Eliedonna E. Cacao, Daniel Wing Wo Hong, Lars Terenius, Vladana Vukojević, Tijana Jovanovic-Talisman
Software Mentions: 2
Published: over 12 years ago

10.3390/genes11040412

Transcriptomic Prediction of Pig Liver-Enriched Gene 1 Functions in a Liver Cell Line
Cited by: 0
Author(s): Zhe Zhang, Zizengchen Wang, Yanna Dang, Jinyang Wang, Sakthidasan Jayaprakash, Huanan Wang, Jin He
Software Mentions: 2
Published: over 6 years ago

10.4103/0975-7406.76463

Differential scanning calorimetry: An invaluable tool for a detailed thermodynamic characterization of macromolecules and their interactions
Cited by: 278
Author(s): Michael Chiu, Elmar J. Prenner
Software Mentions: 2
Published: almost 16 years ago

10.3390/genes11010106

Hormonal and Molecular Regulation of Phallus Differentiation in a Marsupial Tammar Wallaby
Cited by: 0
Author(s): Yu Chen, Marilyn B. Renfree
Software Mentions: 2
Published: almost 7 years ago

10.3390/genes10030194

Halobacterium salinarum virus ChaoS9, a Novel Halovirus Related to PhiH1 and PhiCh1
Cited by: 11
Author(s): Mike Dyall‐Smith, Peter Palm, Gerhard Wanner, Angela Witte, Dieter Oesterhelt, Friedhelm Pfeiffer
Software Mentions: 2
Published: over 7 years ago

10.1262/jrd.2018-136

Glycerol kinase 2 is essential for proper arrangement of crescent-like mitochondria to form the mitochondrial sheath during mouse spermatogenesis
Cited by: 27
Author(s): Keisuke Shimada, Hirotaka Kato, Haruhiko Miyata, Masahito Ikawa
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2105-10-34

Sparse canonical methods for biological data integration: application to a cross-platform study
Cited by: 223
Author(s): Kim Anh Lê Cao, Pascal G.P. Martin, Christèle Robert-Granié, Philippe Besse
Software Mentions: 2
Published: over 17 years ago

10.1371/journal.pone.0023525

OASIS: Online Application for the Survival Analysis of Lifespan Assays Performed in Aging Research
Cited by: 256
Author(s): Jae-Seong Yang, Hyun Jun Nam, Mihwa Seo, Seong Kyu Han, Y. S. Choi, Hong Gil Nam, Seung-Jae Lee, Sanguk Kim
Software Mentions: 2
Published: about 15 years ago

10.1186/s12863-020-00853-3

Sex determination in the GIFT strain of tilapia is controlled by a locus in linkage group 23
Cited by: 25
Author(s): Khanam Taslima, Stefanie Wehner, John B. Taggart, Hugues de Verdal, John A. H. Benzie, Michaël Bekaert, Brendan McAndrew, David J. Penman
Software Mentions: 2
Published: over 6 years ago

10.3390/molecules24162989

Discovery of Lipid Peroxidation Inhibitors from Bacopa Species Prioritized through Multivariate Data Analysis and Multi-Informative Molecular Networking
Cited by: 8
Author(s): Tongchai Saesong, Pierre‐Marie Allard, Emerson Ferreira Queiroz, Laurence Marcourt, Nitra Nuengchamnong, Prapapan Temkitthawon, Nantaka Khorana, Jean‐Luc Wolfender, Kornkanok Ingkaninan
Software Mentions: 2
Published: about 7 years ago

10.1002/ece3.6762

Genetic diversity, population structure, and gene flow analysis of lowland bamboo [<i>Oxytenanthera abyssinica</i> (A. Rich.) Munro] in Ethiopia
Cited by: 16
Author(s): Oumer Abdie Oumer, Kifle Dagne, Tileye Feyissa, Kassahun Tesfaye, Jayaraman Durai, Muhammad Zeeshan Hyder
Software Mentions: 2
Published: about 6 years ago

10.1186/s12967-020-02630-3

A machine learning-based clinical tool for diagnosing myopathy using multi-cohort microarray expression profiles
Cited by: 6
Author(s): Andrew Tran, Chris J. Walsh, Jane Batt, Claudia C. dos Santos, Pingzhao Hu
Software Mentions: 2
Published: almost 6 years ago

10.1186/1479-5876-4-29

Gene expression in acute Stanford type A dissection: a comparative microarray study
Cited by: 44
Author(s): Barbara Theresia Weis-Müller, Olga Modlich, Irina Drobinskaya, Derya Unay, Rita Huber, Hans Bojar, Jochen D. Schipke, P. Feindt, E. Gams, Wolfram Müller, Timm O. Goecke, W. Sandmann
Software Mentions: 2
Published: over 20 years ago

10.3389/fsurg.2021.628848

Efficacy of Prehabilitation Including Exercise on Postoperative Outcomes Following Abdominal Cancer Surgery: A Systematic Review and Meta-Analysis
Cited by: 70
Author(s): Jamie L Waterland, Orla McCourt, Lara Edbrooke, Catherine L Granger, Hilmy Ismail, Bernhard Riedel, Linda Denehy
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.2648

Morphological divergence of lake and stream<i>Phoxinus</i>of Northern Italy and the Danube basin based on geometric morphometric analysis
Cited by: 24
Author(s): David Ramler, Anja Palandačić, Giovanni B. Delmastro, Josef Wanzenböck, Harald Ahnelt
Software Mentions: 2
Published: almost 10 years ago

10.3390/molecules190914723

Challenges and Opportunities of MicroRNAs in Lymphomas
Cited by: 25
Author(s): Giacoma De Tullio, Valentina Fazio, Nicola Sgherza, Carla Minoia, Simona Serratì, Francesca Merchionne, Giacomo Loseto, Angela Iacobazzi, Antonello Rana, P. Petrillo, Nicola Silvestris, Pasquale Iacopino, Attilio Giacosa
Software Mentions: 2
Published: about 12 years ago

10.1002/ece3.7107

The influence of nutrient enrichment on riverine food web function and stability
Cited by: 10
Author(s): Adam D. Canning, Russell G. Death
Software Mentions: 2
Published: almost 6 years ago

10.1002/ece3.5381

Drift versus selection as drivers of phenotypic divergence at small spatial scales: The case of Belgjarskógur threespine stickleback
Cited by: 10
Author(s): Mathew Seymour, Katja Räsänen, Bjarni K. Kristjánsson
Software Mentions: 2
Published: over 7 years ago

10.1002/embr.201337642

Extensive regulation of the non‐coding transcriptome by hypoxia: role of <scp>HIF</scp> in releasing paused <scp>RNA</scp> pol2
Cited by: 138
Author(s): Hani Choudhry, Johannes Schödel, Spyros Oikonomopoulos, Carme Camps, Steffen Grampp, Adrian L. Harris, Peter J. Ratcliffe, Jiannis Ragoussis, David R. Mole
Software Mentions: 2
Published: almost 13 years ago

10.3390/molecules24142564

Integration of Metabolite Profiling and Transcriptome Analysis Reveals Genes Related to Volatile Terpenoid Metabolism in Finger Citron (C. medica var. sarcodactylis)
Cited by: 37
Author(s): Yaying Xu, Changqing Zhu, Changjie Xu, Jun Sun, Donald Grierson, Bo Zhang, Kunsong Chen
Software Mentions: 2
Published: over 7 years ago

10.1186/s12870-018-1613-x

Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation
Cited by: 16
Author(s): Chung Wen Lin, Shih Feng Fu, Yu Ju Liu, Chi Chien Chen, Ching Han Chang, Yau Wen Yang, Hao Huang
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0065324

To Clone or Not to Clone? Induced Pluripotent Stem Cells Can Be Generated in Bulk Culture
Cited by: 34
Author(s): Charlotte A. Willmann, Hatim Hemeda, Lisa A. Pieper, Michael Lenz, Jie Qin, Sylvia Joussen, Stephanie Sontag, Paul Wanek, Bernd Denecke, H Schüler, Martin Zenke, Wolfgang Wagner
Software Mentions: 2
Published: over 13 years ago

10.1186/s13075-019-1874-2

Iguratimod represses B cell terminal differentiation linked with the inhibition of PKC/EGR1 axis
Cited by: 29
Author(s): Ye Yan, Mei Liu, Liang Tang, Fukuan Du, Yuanhua Liu, Pei Hao, Qiong Fu, Qiang Guo, Qingran Yan, Xiaoming Zhang, Chunde Bao
Software Mentions: 2
Published: over 7 years ago