Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: analysis
https://packages.ecosyste.ms/registries/pypi.org/packages/analysis
Source code analysis of Python programs
8 versions
Latest release: about 18 years ago
348 downloads last month
Papers Mentioning analysis 2,036
10.1007/s00109-015-1374-z
The microRNA-29 family in cartilage homeostasis and osteoarthritisCited by: 100
Author(s): Linh Le, T.E. Swingler, Natalie Crowe, Tonia L. Vincent, M.J. Barter, Simon Donell, Anne M. Delany, Tamás Dalmay, David A. Young, Ian M. Clark
Software Mentions: 1
Published: over 8 years ago
10.1007/s00894-018-3915-1
Formation of metallacarboxylic acids through Hieber base reaction. A density functional theory studyCited by: 1
Author(s): Shahbaz Ahmad, Elisabeth A. Berry, Conor H. Boyle, Christopher G. Hudson, Oliver W. Ireland, Emily A. Thompson, Michæl Bühl
Software Mentions: 1
Published: over 5 years ago
10.1186/1750-2187-3-5
Binding mode prediction of conformationally restricted anandamide analogs within the CB<sub>1</sub> receptorCited by: 12
Author(s): Lea W. Padgett, Allyn C. Howlett, Joong‐Youn Shim
Software Mentions: 1
Published: about 16 years ago
10.3892/ol.2014.2047
‘Druggable’ alterations detected by Ion Torrent in metastatic colorectal cancer patientsCited by: 8
Author(s): Weijia Fang, Milan Radovich, Yulong Zheng, Caiyun Fu, Peng Zhao, Chengyu Mao, Yi Zheng, Shusen Zheng
Software Mentions: 1
Published: about 10 years ago
10.7554/eLife.03342
Quantitative determinants of aerobic glycolysis identify flux through the enzyme GAPDH as a limiting stepCited by: 205
Author(s): Alexander A. Shestov, Xiaojing Liu, Zheng Ser, Ahmad A. Cluntun, Yin P. Hung, Lei Huang, Dongsung Kim, Anne Le, Gary Yellen, John G. Albeck, Jason W. Locasale
Software Mentions: 1
Published: almost 10 years ago
10.7554/eLife.63226
Neural representation of abstract task structure during generalizationCited by: 20
Author(s): Avinash R. Vaidya, Henry M Jones, Johanny Castillo, David Badre
Software Mentions: 1
Published: about 3 years ago
10.7554/eLife.58990
Lysosomal protein surface expression discriminates fat- from bone-forming human mesenchymal precursor cellsCited by: 12
Author(s): Jiajia Xu, Yiyun Wang, Ching Yun Hsu, Stefano Negri, Robert J. Tower, Yongxing Gao, Ye Tian, Takashi Sono, Carolyn A. Meyers, W. Reef Hardy, Leslie Chang, Shuaishuai Hu, Nusrat Kahn, Kristen Broderick, Bruno Péault, Aaron W. James
Software Mentions: 1
Published: over 3 years ago
10.7554/eLife.62048
Small molecule cognitive enhancer reverses age-related memory decline in miceCited by: 69
Author(s): Karen Krukowski, Amber Nolan, Elma S. Frias, Morgane Boone, Gonzalo Ureta, Katherine Grue, Maria Serena Paladini, Edward Elizarraras, Luz Delgado, Sebastián Bernales, Peter Walter, Susanna Rosi
Software Mentions: 1
Published: over 3 years ago
10.7554/eLife.31629
Astrocytic modulation of excitatory synaptic signaling in a mouse model of Rett syndromeCited by: 18
Author(s): Benjamin Rakela, Paul Brehm, Gail Mandel
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.31019
GRAM domain proteins specialize functionally distinct ER-PM contact sites in human cellsCited by: 89
Author(s): Marina Besprozvannaya, Eamonn J. Dickson, Hao Li, Kenneth S. Ginburg, Donald M. Bers, Johan Auwerx, Jodi Nunnari
Software Mentions: 1
Published: about 6 years ago
10.7554/eLife.09696
Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experimentCited by: 73
Author(s): Erik M. Quandt, Jimmy Gollihar, Zachary D. Blount, Andrew D. Ellington, George Georgiou, Jeffrey E. Barrick
Software Mentions: 1
Published: over 8 years ago
10.7554/eLife.67468
Variability in the Munc13-1 content of excitatory release sitesCited by: 19
Author(s): Mária R. Karlócai, Judit Herédi, Tünde Benedek, Noémi Holderith, Andrea Lőrincz, Zoltán Nusser
Software Mentions: 1
Published: about 3 years ago
10.7554/eLife.31640
Neuronal populations in the occipital cortex of the blind synchronize to the temporal dynamics of speechCited by: 30
Author(s): Markus J. van Ackeren, Francesca M. Barbero, Stefania Mattioni, Roberto Bottini, Olivier Collignon
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.04247
Stepwise visualization of membrane pore formation by suilysin, a bacterial cholesterol-dependent cytolysinCited by: 142
Author(s): Carl Leung, Natalya V. Dudkina, Natalya Lukoyanova, Adrian W Hodel, Irene Farabella, Arun Prasad Pandurangan, Nargis Jahan, Mafalda Pires Damaso, Dino Osmanović, Cyril Reboul, Michelle Anne Dunstone, Peter W. Andrew, Rana Lonnen, Maya Topf, Helen R. Saibil, Bart W. Hoogenboom
Software Mentions: 1
Published: over 9 years ago
10.7554/eLife.45181
Thyroid hormone regulates distinct paths to maturation in pigment cell lineagesCited by: 96
Author(s): Lauren Saunders, Abhishek Kumar Mishra, Andrew J. Aman, Victor M Lewis, Matthew B. Toomey, Jonathan S. Packer, Xiaojie Qiu, José L. McFaline-Figueroa, Joseph C. Corbo, Cole Trapnell, David M. Parichy
Software Mentions: 1
Published: almost 5 years ago
10.7554/eLife.00801
Skill learning strengthens cortical representations of motor sequencesCited by: 158
Author(s): Tobias Wiestler, Jörn Diedrichsen
Software Mentions: 1
Published: almost 11 years ago
10.7554/eLife.56098
The structures of secretory and dimeric immunoglobulin ACited by: 24
Author(s): Sonya Kumar Bharathkar, Benjamin W. Parker, Andrey Malyutin, Nandan Haloi, Kathryn E. Huey-Tubman, Emad Tajkhorshid, Beth M. Stadtmueller
Software Mentions: 1
Published: over 3 years ago
10.7554/eLife.01949
T cell-intrinsic role of IL-6 signaling in primary and memory responsesCited by: 121
Author(s): Simone A. Nish, Dominik Schenten, Frank Wunderlich, Scott D. Pope, Yan Gao, Namiko Hoshi, Shuang Yu, Xiting Yan, Kyung-Mi Lee, Lesley Pasman, Igor E. Brodsky, Brian Yordy, Hongyu Zhao, Jens C. Brüning, Ruslan Medzhitov
Software Mentions: 1
Published: about 10 years ago
10.3390/ijms11114326
3D-QSAR and Molecular Docking Studies on Derivatives of MK-0457, GSK1070916 and SNS-314 as Inhibitors against Aurora B KinaseCited by: 12
Author(s): Baidong Zhang, Yan Li, Huixiao Zhang, Chun-Zhi Ai
Software Mentions: 1
Published: over 13 years ago
10.3390/ijms12021196
Studies of New Fused Benzazepine as Selective Dopamine D3 Receptor Antagonists Using 3D-QSAR, Molecular Docking and Molecular DynamicsCited by: 9
Author(s): Jing Liu, Yanyan Li, Shuwei Zhang, Zhengtao Xiao, Chun-Zhi Ai
Software Mentions: 1
Published: over 13 years ago
10.3390/ijms12107022
Comparative Molecular Field Analysis (CoMFA) and Comparative Molecular Similarity Indices Analysis (CoMSIA) Studies on α1A-Adrenergic Receptor Antagonists Based on Pharmacophore Molecular AlignmentCited by: 29
Author(s): Xin Zhao, Minsheng Chen, Biyun Huang, Hong Ji, Ming Yuan
Software Mentions: 1
Published: over 12 years ago
10.3390/ijms13010840
MiRNAs and LincRNAs: Could They Be Considered as Biomarkers in Colorectal Cancer?Cited by: 27
Author(s): Ruth Zárate, Valentina Boni, Eva Bandrés, Jesús Garcı́a-Foncillas
Software Mentions: 1
Published: over 12 years ago
10.3390/ijms13066620
Pharmacophore and Molecular Docking Guided 3D-QSAR Study of Bacterial Enoyl-ACP Reductase (FabI) InhibitorsCited by: 12
Author(s): Xiaoyun Lu, Man Lv, Kun Huang, Ke Ding, You Qin
Software Mentions: 1
Published: almost 12 years ago
10.3390/ijms140816970
Structural Properties of Polyphenols Causing Cell Cycle Arrest at G1 Phase in HCT116 Human Colorectal Cancer Cell LinesCited by: 30
Author(s): Soon Young Shin, Hyuk Yoon, Seunghyun Ahn, Dong-Wook Kim, Dong-Ho Bae, Dongsoo Koh, Young Han Lee, Yoongho Lim
Software Mentions: 1
Published: almost 11 years ago
10.3390/ijms151018856
Computer-Aided Targeting of the PI3K/Akt/mTOR Pathway: Toxicity Reduction and Therapeutic OpportunitiesCited by: 52
Author(s): Li Tan, Guanyu Wang
Software Mentions: 1
Published: over 9 years ago
10.3390/ijms151018919
Protective Effects of a New Phloretin Derivative against UVB-Induced Damage in Skin Cell Model and Human VolunteersCited by: 32
Author(s): Seoungwoo Shin, Hyunwoo Kum, Dehun Ryu, Minkyung Kim, Eunsun Jung, Deokhoon Park
Software Mentions: 1
Published: over 9 years ago
10.3390/ijms160715578
DDX3X Biomarker Correlates with Poor Survival in Human GliomasCited by: 29
Author(s): Dueng‐Yuan Hueng, Wen‐Chiuan Tsai, Hung Yi Chiou, Shao-Wei Feng, Chin Lin, Yao‐Feng Li, Li‐Chun Huang, Ming‐Hong Lin
Software Mentions: 1
Published: almost 9 years ago
10.3390/ijms160818348
Overview of Nrf2 as Therapeutic Target in EpilepsyCited by: 45
Author(s): Liliana Carmona-Aparicio, Claudia Pérez-Cruz, Cecilia Zavala-Tecuapetla, Leticia Granados-Rojas, Liliana Rivera-Espinosa, Hortencia Montesinos-Correa, Jacqueline Hernández-Damián, José Pedraza-Chaverrı́, Alicia Sampieri, Elvia Coballase-Urrutía, Noemí Cárdenas-Rodríguez
Software Mentions: 1
Published: almost 9 years ago
10.3390/ijms160920118
Insight into the Structural Determinants of Imidazole Scaffold-Based Derivatives as TNF-α Release Inhibitors by in Silico ExplorationsCited by: 4
Author(s): Yuan Wang, Mingwei Wu, Chun-Zhi Ai, Yonghua Wang
Software Mentions: 1
Published: over 8 years ago
10.3390/ijms161024451
Studies on [5,6]-Fused Bicyclic Scaffolds Derivatives as Potent Dual B-RafV600E/KDR Inhibitors Using Docking and 3D-QSAR ApproachesCited by: 9
Author(s): Haichun Liu, San-Zhi Tang, Shan Lü, Ting Ran, Jian Wang, Yanmin Zhang, Alan Xu, Tao Lü, Yadong Chen
Software Mentions: 1
Published: over 8 years ago
10.3390/ijms18040891
Commitment of Scaffold Proteins in the Onco-Biology of Human Colorectal Cancer and Liver Metastases after Oxaliplatin-Based ChemotherapyCited by: 13
Author(s): Deborah Rotoli, Manuel Morales, Julio Ávila, María del Carmen Maeso, María del Pino García, Ali Mobasheri, Pablo Martín‐Vasallo
Software Mentions: 1
Published: about 7 years ago
10.3390/ijms19092754
Long Non-Coding RNAs in Gliomas: From Molecular Pathology to Diagnostic Biomarkers and Therapeutic TargetsCited by: 26
Author(s): Marek Večeřa, Jiří Šána, Radim Lipina, Martin Smrčka, Ondřej Slabý
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms20071524
Novel Benzene-Based Carbamates for AChE/BChE Inhibition: Synthesis and Ligand/Structure-Oriented SAR StudyCited by: 16
Author(s): Andrzej Bąk, Violetta Kozik, Dariusz Kozakiewicz, Kamila Gajcy, Daniel Strub, Aleksandra Świetlicka, Šárka Štěpánková, Aleš Imramovský, Jarosław Polański, Adam Smoliński, Josef Jampílek
Software Mentions: 1
Published: about 5 years ago
10.3390/ijms20081803
The ERK MAPK Pathway Is Essential for Skeletal Development and HomeostasisCited by: 73
Author(s): Jung-Min Kim, Yujing Yang, Kwang Hwan Park, Han Oh, Matthew B. Greenblatt, Jae-Hyuck Shim
Software Mentions: 1
Published: about 5 years ago
10.1021/acsami.1c09553
Molecular Understanding of Fouling Induction and Removal: Effect of the Interface Temperature on Milk DepositsCited by: 10
Author(s): Alejandro Ávila-Sierra, Holly A. Huellemeier, Zhenyu J. Zhang, Dennis R. Heldman, P.J. Fryer
Software Mentions: 1
Published: almost 3 years ago