Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: analysis

https://packages.ecosyste.ms/registries/pypi.org/packages/analysis

Source code analysis of Python programs
8 versions
Latest release: over 18 years ago
348 downloads last month

Papers Mentioning analysis 2,036

10.1371/journal.pone.0164353
Induced Human Decidual NK-Like Cells Improve Utero-Placental Perfusion in Mice
Cited by: 20
Author(s): Ricardo de Carvalho Cavalli, Ana Sofia Cerdeira, Elizabeth Pernicone, Henri Augusto Korkes, Suzanne D. Burke, Augustine Rajakumar, Ravi Thadhani, Drucilla J. Roberts, Manoj Bhasin, S. Ananth Karumanchi, Hernan D. Kopcow
Software Mentions: 3
Published: about 8 years ago
10.1371/journal.pone.0231771
Phytoplankton transcriptomic and physiological responses to fixed nitrogen in the California current system
Cited by: 3
Author(s): Irina N. Shilova, Jonathan D. Magasin, Matthew M. Mills, Julie Robidart, Kendra A. Turk‐Kubo, Jonathan P. Zehr
Software Mentions: 3
Published: over 4 years ago
10.3390/cells10061271
Nucleoporin TPR Affects C2C12 Myogenic Differentiation via Regulation of Myh4 Expression
Cited by: 3
Author(s): Jana Uhlířová, Lenka Šebestová, Karel Fišer, Tomáš Sieger, Jindřiška Fišerová, Pavel Hozák
Software Mentions: 3
Published: over 3 years ago
10.3390/molecules23010186
Synthesis, Anti-Proliferative Activity Evaluation and 3D-QSAR Study of Naphthoquinone Derivatives as Potential Anti-Colorectal Cancer Agents
Cited by: 9
Author(s): Julio Acuña, Jhoan Piermattey, Daneiva Caro, Sven Bannwitz, L Barrios, Juan‐Felipe López, Yanet Ocampo, Ricardo Vivas‐Reyes, Fabio Aristizábal, Ricardo Gaitán, Klaus Müller, Luís Franco
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12918-017-0456-7
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis
Cited by: 1
Author(s): Duanchen Sun, Yinliang Liu, Yu Xia, Lingyun Wu
Software Mentions: 2
Published: about 7 years ago
10.3389/fpls.2018.00056
Auxin-to-Gibberellin Ratio as a Signal for Light Intensity and Quality in Regulating Soybean Growth and Matter Partitioning
Cited by: 53
Author(s): Feng Yang, Yuanfang Fan, Xiaoling Wu, Yajiao Cheng, Qinlin Liu, Lingyang Feng, Junxu Chen, Zhong Lin Wang, Xiaochun Wang, Taiwen Yong, Weiguo Liu, Jiang Liu, Junbo Du, Kai Shu, Wenyu Yang
Software Mentions: 2
Published: almost 7 years ago
10.3389/fpls.2016.00490
Genome-Wide Identification and Function Analyses of Heat Shock Transcription Factors in Potato
Cited by: 50
Author(s): Ruimin Tang, Wenjiao Zhu, Xiao‐Yan Song, Xingzhong Lin, Jinghui Cai, Man Wang, Qing Yang
Software Mentions: 2
Published: over 8 years ago
10.3390/molecules23071527
Investigations of Structural Requirements for BRD4 Inhibitors through Ligand- and Structure-Based 3D QSAR Approaches
Cited by: 11
Author(s): Adeena Tahir, Rima D. Alharthy, Saadia Naseem, Natasha Mahmood, Mahmood Ahmed, Khuram Shahzad, Muhammad Usman Akhtar, Abdul Hameed, Irfan Sadiq, Haq Nawaz, Muhammad Muddassar
Software Mentions: 2
Published: over 6 years ago
10.3389/fpls.2017.00080
Digital Gene Expression Analysis Provides Insight into the Transcript Profile of the Genes Involved in Aporphine Alkaloid Biosynthesis in Lotus (Nelumbo nucifera)
Cited by: 13
Author(s): Mei Yang, Liming Zhu, Ling Li, Juanjuan Li, Liming Xu, Jia‐Xun Feng, Yanling Liu
Software Mentions: 2
Published: almost 8 years ago
10.3389/fphys.2017.01010
Weighted Gene Co-expression Network Analysis Identifies FKBP11 as a Key Regulator in Acute Aortic Dissection through a NF-kB Dependent Pathway
Cited by: 31
Author(s): Tao Wang, Xingwei He, Xintian Liu, Yujian Liu, Wenjun Zhang, Qiang Huang, Wanjun Liu, Luyang Xiong, Rong Tan, Hongjie Wang, Hesong Zeng
Software Mentions: 2
Published: almost 7 years ago
10.3389/fphys.2018.00215
Mechanistic Role of Reactive Oxygen Species and Therapeutic Potential of Antioxidants in Denervation- or Fasting-Induced Skeletal Muscle Atrophy
Cited by: 62
Author(s): Jiaying Qiu, Qian Fang, Tongtong Xu, Changyue Wu, Lai Xu, Lingbin Wang, Xiaoming Yang, Shu Yu, Qi Zhang, Fei Ding, Hualin Sun
Software Mentions: 2
Published: over 6 years ago
10.3389/fphar.2020.00932
1H NMR-Based Metabolomics Coupled With Molecular Docking Reveal the Anti-Diabetic Effects and Potential Active Components of Berberis vernae on Type 2 Diabetic Rats
Cited by: 22
Author(s): Qi Li, Chengcheng Zhao, Yunsen Zhang, Huan Du, Tong Xu, Xinmei Xu, Jing Zhang, Tingting Kuang, Xiulan Lai, Gang Fan
Software Mentions: 2
Published: over 4 years ago
10.3389/fphar.2020.00952
Hypo-Osmotic Loading Induces Expression of IL-6 in Nucleus Pulposus Cells of the Intervertebral Disc Independent of TRPV4 and TRPM7
Cited by: 8
Author(s): Aleksandra Sadowska, Birsen Altinay, Wolfgang Hitzl, Stephen J. Ferguson, Karin Wuertz‐Kozak
Software Mentions: 2
Published: over 4 years ago
10.1186/s12889-021-10283-0
Examining potential effects of non-occupational post-exposure prophylaxis (nPEP) on sexual behaviors of Chinese men who have sex with men: a cross-sectional study
Cited by: 0
Author(s): Haochu Li, Ran Wei, Jason J. Ong, Eun Sook Kim, Traci L. Weinstein, Xiaofu Ning, Wei Ma
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12885-020-6676-z
Identification of potential novel biomarkers to differentiate malignant thyroid nodules with cytological indeterminate
Cited by: 9
Author(s): Dandan Wu, Shudong Hu, Yongzhong Hou, Yingying He, Shubai Liu
Software Mentions: 2
Published: over 4 years ago
10.3389/fphar.2019.01310
Probing the Druggablility on the Interface of the Protein–Protein Interaction and Its Allosteric Regulation Mechanism on the Drug Screening for the CXCR4 Homodimer
Cited by: 5
Author(s): Liting Shen, Yuan Yuan, Yanzhi Guo, Menglong Li, Chuan Li, Xuemei Pu
Software Mentions: 2
Published: about 5 years ago
10.1002/advs.202100311
Identification and Characterization of Robust Hepatocellular Carcinoma Prognostic Subtypes Based on an Integrative Metabolite‐Protein Interaction Network
Cited by: 23
Author(s): Di Chen, Yiran Zhang, Wen Wang, Huan Chen, Ting Ling, Renyu Yang, Yawei Wang, Chao Duan, Yu Liu, Xin Guo, Lei Fang, Wuguang Liu, Xiumei Liu, Jing Liu, Wuxiyar Otkur, Huan Qi, Xiaolong Liu, Tian Xia, Hong‐xu Liu, Hulin Piao
Software Mentions: 2
Published: over 3 years ago
10.3389/fphar.2020.00357
Prospective Risk Assessment of Medicine Shortages in Europe and Israel: Findings and Implications
Cited by: 21
Author(s): Nenad Miljković, Brian Godman, Milena Kovačević, Piera Polidori, L Tzimis, Torsten Hoppe-Tichy, M. Saar, Ioan Antofie, L Horváth, Thomas De Rijdt, Róbert György Vida, Elena Kkolou, David Preece, Biljana Tubić, Joan Peppard, Alicia Martínez, Cristina García Yubero, Raymond N. Haddad, Dragana Rajinac, Pavle Zelić, Helena Jenzer, Franci Tartar, Gunda Gitler, Martina Jeske, M Davidescu, Guillaume Béraud, Darija Kuruc-Poje, Kristine Sakstrup Haag, Hanne Fischer, Inese Sviestiņa, Gordana Ljubojević, Anne Markestad, Vesna Vujić‐Aleksić, Lana Nežić, Anica Crkvenčić, Johanna Linnolahti, Bogdan Ašanin, Nataša Duborija-Kovačević, Tomasz Bochenek, Isabelle Huys, Branislava Miljković
Software Mentions: 2
Published: over 4 years ago
10.3389/fonc.2021.631943
Hepatic Steatosis Predicts Higher Incidence of Recurrence in Colorectal Cancer Liver Metastasis Patients
Cited by: 7
Author(s): Haiyan Chen, Siqi Dai, Yunxia Fang, Liubo Chen, Kai Jiang, Qichun Wei, Kefeng Ding
Software Mentions: 2
Published: over 3 years ago
10.1186/s13229-017-0130-3
Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism
Cited by: 44
Author(s): Rui Chen, Lea K. Davis, Stephen J. Guter, Qiang Wei, Suma Jacob, Melissa H. Potter, Nancy J. Cox, Edwin H. Cook, James S. Sutcliffe, Bingshan Li
Software Mentions: 2
Published: over 7 years ago
10.3389/fonc.2021.636591
Molecular Classification Based on Prognostic and Cell Cycle-Associated Genes in Patients With Colon Cancer
Cited by: 7
Author(s): Zhiyuan Zhang, Meiling Ji, Jie Li, Qi Wu, Yuesheng Huang, Guodong He, Jiacheng Xu
Software Mentions: 2
Published: over 3 years ago
10.18632/aging.103486
Characterization of aberrant pathways activation and immune microenviroment of BK virus associated nephropathy
Cited by: 5
Author(s): Yongguang Liu, Song Zhou, Jianmin Hu, Wentao Xu, Ding Liu, Jun Liu, Guorong Liao, Zhiqiang Guo, Yuzhu Li, Siqiang Yang, Shichao Li, Hua Chen, Ying Guo, Ming Li, Li‐pei Fan, Liuyang Li, Anqi Lin, Ming Zhao
Software Mentions: 2
Published: over 4 years ago
10.3389/fonc.2020.575657
Translating Preclinical Research for Exercise Oncology: Take It to the VO2max
Cited by: 3
Author(s): Donald M. Lamkin, Theodore Garland
Software Mentions: 2
Published: about 4 years ago
10.3389/fonc.2019.00310
Overexpression of ASPM, CDC20, and TTK Confer a Poorer Prognosis in Breast Cancer Identified by Gene Co-expression Network Analysis
Cited by: 50
Author(s): Jianing Tang, Mengxin Lü, Qiuxia Cui, Dan Zhang, Deguang Kong, Xing Liao, Jiangbo Ren, Yan Gong
Software Mentions: 2
Published: over 5 years ago
10.3389/fonc.2020.584683
Multiple Myeloma Cells Alter Adipogenesis, Increase Senescence-Related and Inflammatory Gene Transcript Expression, and Alter Metabolism in Preadipocytes
Cited by: 19
Author(s): Heather Fairfield, Samantha Costa, Carolyne Falank, Mariah Farrell, Connor Murphy, Anastasia D’Amico, Heather Driscoll, Michaela R. Reagan
Software Mentions: 2
Published: almost 4 years ago
10.3389/fpsyt.2020.512761
Review of the Neural Processes of Working Memory Training: Controlling the Impulse to Throw the Baby Out With the Bathwater
Cited by: 13
Author(s): Samantha Brooks, Rhiannon Mackenzie-Phelan, Jamie L. Tully, Helgi B. Schiöth
Software Mentions: 2
Published: about 4 years ago
10.1186/s12870-018-1613-x
Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation
Cited by: 16
Author(s): Chung Wen Lin, Shih Feng Fu, Yu Ju Liu, Chi Chien Chen, Ching Han Chang, Yau Wen Yang, Hao Huang
Software Mentions: 2
Published: almost 6 years ago
10.3390/microorganisms9020240
Shedding Light on the African Enigma: In Vitro Testing of Homo sapiens-Helicobacter pylori Coevolution
Cited by: 9
Author(s): Bruno Cavadas, Marina Concli Leite, Nicole Pedro, Ana C. Magalhães, Joana Melo, Marcelo Correia, Valdemar Máximo, Rui Camacho, Nuno A. Fonseca, Céu Figueiredo, Luı́sa Pereira
Software Mentions: 2
Published: almost 4 years ago
10.1186/s40168-020-00923-9
The interplay between host genetics and the gut microbiome reveals common and distinct microbiome features for complex human diseases
Cited by: 64
Author(s): Fengzhe Xu, Yuanqing Fu, Tao Sun, Zengliang Jiang, Zelei Miao, Menglei Shuai, Wanglong Gou, Chu-wen Ling, Jian Yang, Jun Wang, Yuming Chen, Ju‐Sheng Zheng
Software Mentions: 2
Published: about 4 years ago
10.1186/s12870-021-02927-5
The mechanism of sesame resistance against Macrophomina phaseolina was revealed via a comparison of transcriptomes of resistant and susceptible sesame genotypes
Cited by: 11
Author(s): Wenqing Yan, Yunxia Ni, Xintao Liu, Hui Zhao, Yanhua Chen, Min Jiang, Mingming Liu, Hongyan Liu, Bin Tian
Software Mentions: 2
Published: over 3 years ago
10.3389/fonc.2019.01325
Novel Breast-Specific Long Non-coding RNA LINC00993 Acts as a Tumor Suppressor in Triple-Negative Breast Cancer
Cited by: 25
Author(s): Shipeng Guo, Jiang Lei, Kai Tao, Chen Chen, Haochen Yu, Shengchun Liu
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12934-019-1229-3
A metabolic reconstruction of Lactobacillus reuteri JCM 1112 and analysis of its potential as a cell factory
Cited by: 18
Author(s): Thordis Kristjansdottir, Elleke Fenna Bosma, Filipe Branco dos Santos, Emre Özdemir, Markus J. Herrgård, Lucas França, Bruno Sommer Ferreira, Alex Toftgaard Nielsen, Steinn Guðmundsson
Software Mentions: 2
Published: about 5 years ago
10.1186/s12870-021-02932-8
Development of genic KASP SNP markers from RNA-Seq data for map-based cloning and marker-assisted selection in maize
Cited by: 11
Author(s): Zhengjie Chen, Danling Tang, Jixing Ni, Peng Li, Le Wang, Jinhong Zhou, Chenyang Li, Hai Long, Lujiang Li, Jian Liu
Software Mentions: 2
Published: over 3 years ago
10.1186/s12934-015-0355-9
Genetic and nutrient modulation of acetyl-CoA levels in Synechocystis for n-butanol production
Cited by: 89
Author(s): Josefine Anfelt, Danuta Kaczmarzyk, Kiyan Shabestary, Björn Renberg, Johan Rockberg, Jens Nielsen, Mathias Uhlén, Elton P. Hudson
Software Mentions: 2
Published: about 9 years ago
10.1186/s12934-017-0824-4
Metabolic engineering of Synechococcus elongatus PCC 7942 for improvement of 1,3-propanediol and glycerol production based on in silico simulation of metabolic flux distribution
Cited by: 29
Author(s): Yasutaka Hirokawa, Shingo Matsuo, Hiroyuki Hamada, Fumio Mizutani, Taizo Hanai
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12870-020-02817-2
Auxin is involved in arbuscular mycorrhizal fungi-promoted tomato growth and NADP-malic enzymes expression in continuous cropping substrates
Cited by: 17
Author(s): Yu Wang, Wenze Zhang, Weikang Liu, Golam Jalal Ahammed, Wenxu Wen, Shirong Guo, Sheng Shu, Jian Sun
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12870-020-2322-9
Identification of the regulatory networks and hub genes controlling alfalfa floral pigmentation variation using RNA-sequencing analysis
Cited by: 21
Author(s): Huirong Duan, Lirong Wang, Guangxin Cui, Xingyue Zhou, Xiaorong Duan, Hongshan Yang
Software Mentions: 2
Published: over 4 years ago
10.3389/fonc.2020.572919
Identification of a Transcriptional Prognostic Signature From Five Metabolic Pathways in Oral Squamous Cell Carcinoma
Cited by: 9
Author(s): Xiang Wu, Yuan Yao, Zhongwu Li, Huan Ge, Dongmiao Wang, Yanling Wang
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12934-018-1052-2
Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains
Cited by: 51
Author(s): Ilaria Massaiu, Lorenzo Pasotti, Nikolaus Sonnenschein, Erlinda Rama, Matteo Cavaletti, Paolo Magni, Cinzia Calvio, Markus J. Herrgård
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12870-019-1933-5
De novo transcriptome sequencing and gene expression profiling of Magnolia wufengensis in response to cold stress
Cited by: 38
Author(s): Shixin Deng, Jun Ma, Lili Zhang, Faju Chen, Ziyang Sang, Zhongkui Jia, Ma Li
Software Mentions: 2
Published: over 5 years ago
10.3389/fonc.2021.668424
Selenite Induces Cell Cycle Arrest and Apoptosis via Reactive Oxygen Species-Dependent Inhibition of the AKT/mTOR Pathway in Thyroid Cancer
Cited by: 8
Author(s): Zhen Cheng, Shuang Yu, Weiman He, Jie Li, Tianyi Xu, Junyu Xue, Peijie Shi, Shuwei Chen, Yanbing Li, Shubin Hong, Haipeng Xiao
Software Mentions: 2
Published: over 3 years ago
10.3390/metabo10020059
TGF-ß1 Induces Changes in the Energy Metabolism of White Adipose Tissue-Derived Human Adult Mesenchymal Stem/Stromal Cells In Vitro
Cited by: 2
Author(s): Olga Hahn, Lena-Christin Ingwersen, Abdel-Rahman Soliman, Mohamed Hamed, Georg Fuellen, Markus Wolfien, Julia Scheel, Olaf Wolkenhauer, Dirk Koczan, Günter Kamp, Kirsten Peters
Software Mentions: 2
Published: almost 5 years ago
10.1186/1472-6793-9-23
Transcriptional profile of isoproterenol-induced cardiomyopathy and comparison to exercise-induced cardiac hypertrophy and human cardiac failure
Cited by: 90
Author(s): Cristi L. Galindo, Michael A. Skinner, Mounir Errami, Lyle Olson, David A. Watson, Jing Li, John McCormick, Lauren J. McIver, Neil M. Kumar, Thinh Q. Pham, Harold R. Garner
Software Mentions: 2
Published: almost 15 years ago
10.3390/metabo10080316
Metabolite Profiles of the Relationship between Body Mass Index (BMI) Milestones and Metabolic Risk during Early Adolescence
Cited by: 3
Author(s): Wei Perng, Mohammad L. Rahman, Izzuddin M. Aris, Gregory A. Michelotti, Joanne E. Sordillo, Jorge E. Chavarro, Emily Oken, Marie‐France Hivert
Software Mentions: 2
Published: over 4 years ago
10.3390/metabo11090606
Next-Generation Genome-Scale Metabolic Modeling through Integration of Regulatory Mechanisms
Cited by: 15
Author(s): Carolina H Chung, Dawei Lin, Alec Eames, Sriram Chandrasekaran
Software Mentions: 2
Published: about 3 years ago
10.3389/fonc.2021.619517
Establishment of a Macrophage Phenotypic Switch Related Prognostic Signature in Patients With Pancreatic Cancer
Cited by: 12
Author(s): Muxing Li, Hangyan Wang, Chunhui Yuan, Zhaolai Ma, Bin Jiang, Lei Li, Li Zhang, Dianrong Xiu
Software Mentions: 2
Published: over 3 years ago
10.1186/s12868-015-0212-0
T cell deficiency in spinal cord injury: altered locomotor recovery and whole-genome transcriptional analysis
Cited by: 20
Author(s): David Satzer, Catherine Miller, Jacob R. Maxon, Joseph Voth, Christina DiBartolomeo, Rebecca Mahoney, James R. Dutton, Walter C. Low, Ann M. Parr
Software Mentions: 2
Published: about 9 years ago
10.3389/fonc.2019.00291
Identification of RE1-Silencing Transcription Factor as a Promoter of Metastasis in Pancreatic Cancer
Cited by: 6
Author(s): Haoyi Jin, Peng Liu, Lingming Kong, Xiang Fei, Yang Gao, Tianyu Wu, Defeng Sun
Software Mentions: 2
Published: over 5 years ago
10.3389/fonc.2021.697534
Multi-Omics Analysis of the Expression and Prognosis for FKBP Gene Family in Renal Cancer
Cited by: 9
Author(s): Zeqiang Sun, Qin Xin, Fang Juan-juan, Yongxin Tang, Yi‐Ming Fan
Software Mentions: 2
Published: over 3 years ago
10.3390/metabo11080484
The Metabolic Signature of In Vitro Produced Bovine Embryos Helps Predict Pregnancy and Birth after Embryo Transfer
Cited by: 4
Author(s): Isabel Gimeno, Pablo García‐Manrique, S. Carrocera, Cristina López-Hidalgo, Luís Valledor, David Martín-González, E. Gómez
Software Mentions: 2
Published: over 3 years ago
10.18632/aging.103174
Sirt1 gene confers Adriamycin resistance in DLBCL via activating the PCG-1α mitochondrial metabolic pathway
Cited by: 9
Author(s): Zhen Zhou, Dan Ma, Peifan Li, Ping Wang, Ping Liu, Danna Wei, Jun Wang, Qi Zhong, Qin Fang, Jishi Wang
Software Mentions: 2
Published: over 4 years ago
10.3389/fonc.2019.01446
LDHA Promotes Oral Squamous Cell Carcinoma Progression Through Facilitating Glycolysis and Epithelial–Mesenchymal Transition
Cited by: 60
Author(s): Hao Cai, Jiaxin Li, Yadong Zhang, Yan Liao, Yue Zhu, Cheng Wang, Jinsong Hou
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12882-021-02447-2
Comprehensive analysis of diabetic nephropathy expression profile based on weighted gene co-expression network analysis algorithm
Cited by: 17
Author(s): Alieh Gholaminejad, Mohammad Fathalipour, Amir Roointan
Software Mentions: 2
Published: over 3 years ago
10.3389/fnins.2019.01033
Enzymatic Digestion of Hyaluronan-Based Brain Extracellular Matrix in vivo Can Induce Seizures in Neonatal Mice
Cited by: 12
Author(s): Alena Balashova, Vladimir Pershin, Olga Zaborskaya, Natalia Tkachenko, Andrey Mironov, Evgenii L. Guryev, Л. К. Курбатов, Murat R. Gainullin, И.В. Мухина
Software Mentions: 2
Published: about 5 years ago
10.1186/s12915-021-01118-w
An increase of phosphatidylcholines in follicular fluid implies attenuation of embryo quality on day 3 post-fertilization
Cited by: 6
Author(s): Ju Wang, Wei Zheng, Shuoping Zhang, Kunlun Yan, Miao Jin, Huiling Hu, Zhen Ma, Fei Gong, Guangxiu Lu, Yan Ren, Liang Lin, Ge Lin, Liang Hu, Siqi Liu
Software Mentions: 2
Published: about 3 years ago
10.3390/metabo10080325
Comparative Metabolomic Analysis of Dendrobium officinale under Different Cultivation Substrates
Cited by: 23
Author(s): Si-Min Zuo, Hai‐Dong Yu, Weimin Zhang, Qiuping Zhong, Wenxue Chen, Yong‐Huan Yun, Haiming Chen
Software Mentions: 2
Published: over 4 years ago
10.1186/s12891-019-2562-8
Musculoskeletal application and validation of speckle-tracking ultrasonography
Cited by: 13
Author(s): Lars Henrik Frich, Kate Lykke Lambertsen, John Hjarbæk, Jordi S. Dahl, Anders Holsgaard-Larsen
Software Mentions: 2
Published: over 5 years ago
10.3389/fnins.2020.00479
Birth Weight and Stroke in Adult Life: Genetic Correlation and Causal Inference With Genome-Wide Association Data Sets
Cited by: 11
Author(s): Ting Wang, Zaixiang Tang, Xinghao Yu, Yixing Gao, Fengjun Guan, Bai Wei, Shuiping Huang, Junnian Zheng, Ping Zeng
Software Mentions: 2
Published: over 4 years ago
10.3390/metabo10050177
Biochemical Characteristics and a Genome-Scale Metabolic Model of an Indian Euryhaline Cyanobacterium with High Polyglucan Content
Cited by: 9
Author(s): Ahmad Ahmad, Ruchi Pathania, Shireesh Srivastava
Software Mentions: 2
Published: over 4 years ago
10.3390/metabo9050081
The Fate of Glutamine in Human Metabolism. The Interplay with Glucose in Proliferating Cells
Cited by: 20
Author(s): Jean‐Pierre Mazat, Stéphane Ransac
Software Mentions: 2
Published: over 5 years ago
10.3389/fmolb.2021.727481
Characterization of METTL7B to Evaluate TME and Predict Prognosis by Integrative Analysis of Multi-Omics Data in Glioma
Cited by: 8
Author(s): Xiaochuan Chen, Chao Li, Ying Liu, Shihong Wu, Wei Liu, Ting Lin, Miaomiao Li, Youliang Weng, Wanzun Lin, Sufang Qiu
Software Mentions: 2
Published: about 3 years ago
10.3389/fmolb.2021.673044
Altered Glycosylation in the Aging Heart
Cited by: 6
Author(s): Patricia Franzka, Lynn Krüger, Mona K Schurig, Maja Olecka, Steve Hoffmann, Véronique Blanchard, Christian A. Hübner
Software Mentions: 2
Published: over 3 years ago
10.1097/MD.0000000000026896
LEP as a potential biomarker in prognosis of breast cancer
Cited by: 5
Author(s): Tong Jin, Madhuri Saindane, Kyoung Sik Park, SeongHoon Kim, Sang-Eun Nam, Young-Tae Yoo, Jung‐Hyun Yang, IkJin Yun
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2021.623739
Probiotics Bacillus licheniformis Improves Intestinal Health of Subclinical Necrotic Enteritis-Challenged Broilers
Cited by: 29
Author(s): Liugang Kan, Fangshen Guo, Yan Liu, Van Hieu Pham, Yuming Guo, Weihong Zhong
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2021.626759
Phylogenetic Revision of the Genus Aliivibrio: Intra- and Inter-Species Variance Among Clusters Suggest a Wider Diversity of Species
Cited by: 6
Author(s): Terje Klemetsen, Christian Karlsen, Nils Peder Willassen
Software Mentions: 2
Published: almost 4 years ago
10.3389/fmicb.2014.00406
Spatial patterns and links between microbial community composition and function in cyanobacterial mats
Cited by: 15
Author(s): Mohammad A. A. Al-Najjar, Alban Ramette, Michael Kühl, Waleed Hamza, Judith M. Klatt, Lùbos Polerecký
Software Mentions: 2
Published: over 10 years ago
10.3390/md15070196
Comprehensive Expression Profiling and Functional Network Analysis of Porphyra-334, One Mycosporine-Like Amino Acid (MAA), in Human Keratinocyte Exposed with UV-radiation
Cited by: 7
Author(s): Sung-Suk Suh, Sung Gu Lee, Ui Joung Youn, Se Jong Han, Il-Chan Kim, Sanghee Kim
Software Mentions: 2
Published: over 7 years ago
10.18632/aging.101749
Expression and gene regulation network of RBM8A in hepatocellular carcinoma based on data mining
Cited by: 48
Author(s): Yan Lin, Rong Liang, Yufen Qiu, Yufeng Lv, Jinyan Zhang, Gang Qin, Chunling Yuan, Zhihui Liu, Yongqiang Li, Donghua Zou, Ying Mao
Software Mentions: 2
Published: almost 6 years ago
10.3389/fmicb.2020.577497
An Educational Bioinformatics Project to Improve Genome Annotation
Cited by: 5
Author(s): Zoie Amatore, Susan C. Gunn, Laura Harris
Software Mentions: 2
Published: almost 4 years ago
10.3390/md13010249
LC-MS-Based Metabolomics Study of Marine Bacterial Secondary Metabolite and Antibiotic Production in Salinispora arenicola
Cited by: 42
Author(s): Utpal Bose, Amitha K. Hewavitharana, Yi Kai Ng, P. Nicholas Shaw, John A. Fuerst, Mark P. Hodson
Software Mentions: 2
Published: almost 10 years ago
10.1186/s12920-015-0078-0
Integrative network analysis reveals different pathophysiological mechanisms of insulin resistance among Caucasians and African Americans
Cited by: 15
Author(s): Swapan K. Das, Neeraj Kumar Sharma, Bin Zhang
Software Mentions: 2
Published: almost 10 years ago
10.3389/fmicb.2018.01496
Influenza Virus Segment Composition Influences Viral Stability in the Environment
Cited by: 14
Author(s): Thomas Labadie, Christophe Batéjat, Jean-Claude Manuguerra, India Leclercq
Software Mentions: 2
Published: over 6 years ago
10.1186/1471-2105-7-81
Transcriptomic response to differentiation induction
Cited by: 1
Author(s): Geoffrey W. Patton, Robert M. Stephens, Igor A. Sidorov, Xiao Xue, Richard A. Lempicki, D.S. Dimitrov, Robert H. Shoemaker, Gabriela Tudor
Software Mentions: 2
Published: almost 19 years ago
10.3389/fmicb.2021.661798
Global Expansion of Linezolid-Resistant Coagulase-Negative Staphylococci
Cited by: 8
Author(s): Vladimir Gostev, Semen A. Leyn, Alexander Kruglov, Daria Likholetova, Olga Kalinogorskaya, Marina Baykina, Н. В. Дмитриева, Z. V. Grigorievskaya, Tatiana V. Priputnevich, L A Lyubasovskaya, Alexey B. Gordeev, С В Сидоренко
Software Mentions: 2
Published: about 3 years ago
10.1186/s12936-021-03759-2
The application of drones for mosquito larval habitat identification in rural environments: a practical approach for malaria control?
Cited by: 28
Author(s): Michelle C. Stanton, Patrick Kalonde, Kennedy Zembere, Remy Hoek Spaans, Christopher M. Jones
Software Mentions: 2
Published: over 3 years ago
10.1186/1471-2105-11-176
Gene set enrichment meta-learning analysis: next- generation sequencing versus microarrays
Cited by: 17
Author(s): Gregor Štiglic, Mateja Bajgot, Peter Kokol
Software Mentions: 2
Published: over 14 years ago
10.3389/fmicb.2019.00440
Comparative Metabonomic Investigations of Schistosoma japonicum From SCID Mice and BALB/c Mice: Clues to Developmental Abnormality of Schistosome in the Immunodeficient Host
Cited by: 12
Author(s): Rong Liu, Wenjun Cheng, Hongliang Tang, Qian Zhong, Zhenping Ming, Hui-Fen Dong
Software Mentions: 2
Published: over 5 years ago
10.1186/1755-8794-3-44
Molecular signature of response and potential pathways related to resistance to the HSP90 inhibitor, 17AAG, in breast cancer
Cited by: 26
Author(s): Magdalena Zając, Gonzalo Vázquez Gómez, Javier Benı́tez, Beatriz Martı́nez-Delgado
Software Mentions: 2
Published: about 14 years ago
10.3389/fimmu.2017.00557
Predicting RTS,S Vaccine-Mediated Protection from Transcriptomes in a Malaria-Challenge Clinical Trial
Cited by: 49
Author(s): Robert A. van den Berg, Margherita Coccia, W. Ripley Ballou, Kent E. Kester, Christian F. Ockenhouse, Johan Vekemans, Erik Jongert, Arnaud M. Didierlaurent, Robbert G. van der Most
Software Mentions: 2
Published: over 7 years ago
10.1080/17453670902807474
Notes on the use and interpretation of radiostereometric analysis
Cited by: 56
Author(s): Brian Derbyshire, R. J. Prescott, Martyn Porter
Software Mentions: 2
Published: almost 16 years ago
10.1186/s40170-019-0202-2
Tissue of origin dictates GOT1 dependence and confers synthetic lethality to radiotherapy
Cited by: 28
Author(s): Barbara Scott Nelson, Lin Lin, Daniel M. Kremer, Cristovão M. Sousa, Cecilia Cotta‐Ramusino, Amy L. Myers, Johanna Ramos, Ting Gao, Ilya Kovalenko, Kari Wilder-Romans, Joseph Dresser, Mary A. Davis, Ho‐Joon Lee, Zeribe C. Nwosu, Scott Campit, Oksana Mashadova, Brandon Nicolay, Zachary P. Tolstyka, Christopher J. Halbrook, Sriram Chandrasekaran, John M. Asara, Howard C. Crawford, Lewis C. Cantley, Alec C. Kimmelman, Daniel R. Wahl, Costas A. Lyssiotis
Software Mentions: 2
Published: almost 5 years ago
10.3389/fimmu.2019.01087
Systems Immunology Characterization of Novel Vaccine Formulations for Mycoplasma hyopneumoniae Bacterins
Cited by: 28
Author(s): Anneleen Matthijs, Gaël Auray, Virginie Jakob, Obdulio García-Nicolás, Roman Othmar Braun, Irene Keller, Rémy Bruggman, Bert Devriendt, Filip Boyen, Carlos A. Guzmán, Annelies Michiels, Freddy Haesebrouck, Nicolas Collin, Christophe Barnier-Quer, Dominiek Maes, Artur Summerfield
Software Mentions: 2
Published: over 5 years ago
10.1002/cam4.3400
Immune‐related signature predicts the prognosis and immunotherapy benefit in bladder cancer
Cited by: 29
Author(s): Yejinpeng Wang, Changhong Liang, Mengxue Yu, Yayun Fang, Kaiyu Qian, Gang Wang, Lingao Ju, Yu Xiao, Xinghuan Wang
Software Mentions: 2
Published: about 4 years ago
10.1186/s12909-016-0676-3
A latent trait approach to measuring HIV/AIDS related stigma in healthcare professionals: application of mokken scaling technique
Cited by: 5
Author(s): Keivan Ahmadi, Daniel D. Reidpath, Pascale Allotey, Mohamed Azmi Hassali
Software Mentions: 2
Published: over 8 years ago
10.3389/fimmu.2021.701656
The Transcriptomic Profile of Monocytes from Patients With Sjögren’s Syndrome Is Associated With Inflammatory Parameters and Is Mimicked by Circulating Mediators
Cited by: 11
Author(s): Ana P Lopes, Cornelis P. J. Bekker, Maarten R Hillen, Sofie L M Blokland, Anneline C. Hinrichs, Aridaman Pandit, Aike A. Kruize, Timothy R D J Radstake, Joël A G van Roon
Software Mentions: 2
Published: over 3 years ago
10.3389/fimmu.2020.00816
EpitoCore: Mining Conserved Epitope Vaccine Candidates in the Core Proteome of Multiple Bacteria Strains
Cited by: 5
Author(s): Tayna S. Fiuza, J. A. S. Lima, Gustavo Souza
Software Mentions: 2
Published: over 4 years ago
10.1002/cam4.386
<i>S</i> ‐adenosylmethionine blocks osteosarcoma cells proliferation and invasion <i>in vitro</i> and tumor metastasis <i>in vivo</i> : therapeutic and diagnostic clinical applications
Cited by: 46
Author(s): Surabhi Parashar, David Cheishvili, Ani Arakelian, Zahid Hussain, Imrana Tanvir, Haseeb Ahmed Khan, Moshe Szyf, Shafaat A. Rabbani
Software Mentions: 2
Published: almost 10 years ago
10.3389/fnhum.2015.00421
Basal ganglia and cortical networks for sequential ordering and rhythm of complex movements
Cited by: 21
Author(s): Jeffery G. Bednark, Megan E. J. Campbell, Ross Cunnington
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0134014
Flux Balance Analysis with Objective Function Defined by Proteomics Data—Metabolism of Mycobacterium tuberculosis Exposed to Mefloquine
Cited by: 21
Author(s): Daniel Montezano, Laura Meek, Rashmi Gupta, Luiz E. Bermudez, J.C.M. Bermudez
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0096841
HaplotypeCN: Copy Number Haplotype Inference with Hidden Markov Model and Localized Haplotype Clustering
Cited by: 3
Author(s): Yen-Jen Lin, Yu-Tin Chen, Shu-Ni Hsu, Chieh Yu Peng, Chuan‐Yi Tang, Tzu‐Chen Yen, Wu‐Chiao Hsieh
Software Mentions: 2
Published: over 10 years ago
10.3389/fnhum.2017.00650
Categorization for Faces and Tools—Two Classes of Objects Shaped by Different Experience—Differs in Processing Timing, Brain Areas Involved, and Repetition Effects
Cited by: 6
Author(s): Vladimir V. Kozunov, Anastasia Nikolaeva, Tatiana A. Stroganova
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0164627
Comparing Eye Tracking with Electrooculography for Measuring Individual Sentence Comprehension Duration
Cited by: 13
Author(s): Jana Müller, Dorothea Wendt, Birger Kollmeier, Thomas Brand
Software Mentions: 2
Published: about 8 years ago
10.1111/acel.13229
Underlying features of epigenetic aging clocks in vivo and in vitro
Cited by: 84
Author(s): Zuyun Liu, Diana Leung, Kyra Thrush, Wei Zhao, Scott Ratliff, Toshiko Tanaka, Lauren Schmitz, Jennifer A. Smith, Luigi Ferrucci, Morgan E. Levine
Software Mentions: 2
Published: about 4 years ago
10.3389/fgene.2018.00590
PlantEAR: Functional Analysis Platform for Plant EAR Motif-Containing Proteins
Cited by: 34
Author(s): Jiaotong Yang, Yue Liu, Hengyu Yan, Tian Tian, Qi You, Liwei Zhang, Wenying Xu, Zhen Su
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0160574
Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers
Cited by: 15
Author(s): Michelle Davison, Todd J. Treangen, Sergey Koren, Mihai Pop, Devaki Bhaya
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0159790
Phylogeography of Libanotis buchtormensis (Umbelliferae) in Disjunct Populations along the Deserts in Northwest China
Cited by: 7
Author(s): Ping Wang, Xianzhi Zhang, Nan Tang, Jianjun Liu, Liang Xu, Kai Wang
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0064181
Suppression and Activation of the Malignant Phenotype by Extracellular Matrix in Xenograft Models of Bladder Cancer: A Model for Tumor Cell “Dormancy”
Cited by: 15
Author(s): Robert E. Hurst, Paul Hauser, Kimberly D. Kyker, Jonathan E. Heinlen, Jason P. Hodde, Michael C. Hiles, Stanley D. Kosanke, Mikhail G. Dozmorov, Michael A. Ihnat
Software Mentions: 2
Published: over 11 years ago
10.1186/1471-2105-15-77
Predicting HIV-1 broadly neutralizing antibody epitope networks using neutralization titers and a novel computational method
Cited by: 11
Author(s): Mark C. Evans, Pham Phung, Agnès Paquet, Anvi Parikh, Christos J. Petropoulos, Terri Wrin, Mojgan Haddad
Software Mentions: 2
Published: over 10 years ago
10.3389/fgene.2020.617136
Revealing the Interactions Between Diabetes, Diabetes-Related Diseases, and Cancers Based on the Network Connectivity of Their Related Genes
Cited by: 1
Author(s): Lijuan Zhu, Xu Ju, Qiuling Wang, Ailan Wang, Chao Li, Geng Tian, Huajun Zhang, Size Chen
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0210008
Constraints-based analysis identifies NAD+ recycling through metabolic reprogramming in antibiotic resistant Chromobacterium violaceum
Cited by: 10
Author(s): Deepanwita Banerjee, Anu Raghunathan
Software Mentions: 2
Published: almost 6 years ago