pypi: analysis | Projects | Ecosyste.ms: Papers

10.3389/fonc.2021.630417

Prognostic and Immunological Role of mRNA ac4C Regulator NAT10 in Pan-Cancer: New Territory for Cancer Research?
Cited by: 19
Author(s): Chuanxi Yang, Tingting Wu, Jing Zhang, Jinhui Liu, Kun Zhao, Wei Sun, Xin Zhou, Xiangqing Kong, Jing Shi
Software Mentions: 3
Published: over 4 years ago

10.3389/fninf.2014.00029

A review of multivariate analyses in imaging genetics
Cited by: 91
Author(s): Jingyu Liu, Vince D. Calhoun
Software Mentions: 3
Published: over 11 years ago

10.3389/fonc.2020.01494

Mutant Proteomics of Lung Adenocarcinomas Harboring Different EGFR Mutations
Cited by: 6
Author(s): Toshihide Nishimura, Ákos Végvári, Hiroki Nakamura, Harubumi Kato, Hisashi Saji
Software Mentions: 3
Published: over 5 years ago

10.1038/s41398-019-0526-2

Circadian rest-activity patterns in bipolar disorder and borderline personality disorder
Cited by: 16
Author(s): Niall M. McGowan, Guy M. Goodwin, Amy C. Bilderbeck, Kate Saunders
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-37489-4

Metabolism as an early predictor of DPSCs aging
Cited by: 26
Author(s): Dannie Macrin, Ammar Alghadeer, Yan Ting Zhao, Jason W. Miklas, Abdiasis M. Hussein, Damien Detraux, Aaron M. Robitaille, Anup Madan, Randall T. Moon, Yuliang Wang, Arikketh Devi, Julie Mathieu, Hannele Ruohola‐Baker
Software Mentions: 2
Published: almost 7 years ago

10.1155/2014/252489

The Influences of Canopy Species and Topographic Variables on Understory Species Diversity and Composition in Coniferous Forests
Cited by: 18
Author(s): Huasheng Hong, Qi Feng, Yufang Su
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmicb.2021.626759

Phylogenetic Revision of the Genus Aliivibrio: Intra- and Inter-Species Variance Among Clusters Suggest a Wider Diversity of Species
Cited by: 6
Author(s): Terje Klemetsen, Christian Karlsen, Nils Peder Willassen
Software Mentions: 2
Published: almost 5 years ago

10.3389/fphys.2017.01010

Weighted Gene Co-expression Network Analysis Identifies FKBP11 as a Key Regulator in Acute Aortic Dissection through a NF-kB Dependent Pathway
Cited by: 31
Author(s): Tao Wang, Xingwei He, Xintian Liu, Yujian Liu, Wenjun Zhang, Qiang Huang, Wanjun Liu, Luyang Xiong, Rong Tan, Hongjie Wang, Hesong Zeng
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.tips.2007.09.008

Pharmacology under the microscope: the use of fluorescence correlation spectroscopy to determine the properties of ligand–receptor complexes
Cited by: 108
Author(s): Stephen J. Briddon, Stephen J. Hill
Software Mentions: 2
Published: almost 18 years ago

10.1038/s41598-019-38989-7

Long Non-coding RNAs Coordinate Developmental Transitions and Other Key Biological Processes in Grapevine
Cited by: 29
Author(s): Garima Bhatia, Shailesh Sharma, Santosh Kumar Upadhyay, Kashmir Singh
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2016.00490

Genome-Wide Identification and Function Analyses of Heat Shock Transcription Factors in Potato
Cited by: 50
Author(s): Ruimin Tang, Wenjiao Zhu, Xiao‐Yan Song, Xingzhong Lin, Jinghui Cai, Man Wang, Qing Yang
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2017.00080

Digital Gene Expression Analysis Provides Insight into the Transcript Profile of the Genes Involved in Aporphine Alkaloid Biosynthesis in Lotus (Nelumbo nucifera)
Cited by: 13
Author(s): Mei Yang, Liming Zhu, Ling Li, Juanjuan Li, Liming Xu, Jia‐Xun Feng, Yanling Liu
Software Mentions: 2
Published: almost 9 years ago

10.1100/2012/842727

Biomarker Identification for Prostate Cancer and Lymph Node Metastasis from Microarray Data and Protein Interaction Network Using Gene Prioritization Method
Cited by: 14
Author(s): Carlos Roberto Arias, Hsiang‐Yuan Yeh, Von-Wun Soo
Software Mentions: 2
Published: almost 14 years ago

10.1128/mBio.00937-19

Endogenous Retrovirus-Derived Long Noncoding RNA Enhances Innate Immune Responses via Derepressing RELA Expression
Cited by: 34
Author(s): Bin Zhou, Fei Qi, Fang–Jing Wu, Hongbo Nie, Yifan Song, Lu Shao, Jingxuan Han, Zhiyong Wu, Hexige Saiyin, Gang Wei, Penghua Wang, Ting Ni, Feng Qian
Software Mentions: 2
Published: over 6 years ago

10.1128/mBio.01332-19

Epstein-Barr Virus Infection Promotes Epithelial Cell Growth by Attenuating Differentiation-Dependent Exit from the Cell Cycle
Cited by: 25
Author(s): Mark R. Eichelberg, Rene Welch, Jessie Guidry, Ahmed Ali, Makoto Ohashi, Kathleen R. Makielski, Kyle G. McChesney, Nicholas Van Sciver, Paul F. Lambert, Sündüz Keleş, Shannon C. Kenney, Rona S. Scott, Eric Johannsen
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2021.668424

Selenite Induces Cell Cycle Arrest and Apoptosis via Reactive Oxygen Species-Dependent Inhibition of the AKT/mTOR Pathway in Thyroid Cancer
Cited by: 8
Author(s): Zhen Cheng, Shuang Yu, Weiman He, Jie Li, Tianyi Xu, Junyu Xue, Peijie Shi, Shuwei Chen, Yanbing Li, Shubin Hong, Haipeng Xiao
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2020.584683

Multiple Myeloma Cells Alter Adipogenesis, Increase Senescence-Related and Inflammatory Gene Transcript Expression, and Alter Metabolism in Preadipocytes
Cited by: 19
Author(s): Heather Fairfield, Samantha Costa, Carolyne Falank, Mariah Farrell, Connor Murphy, Anastasia D’Amico, Heather Driscoll, Michaela R. Reagan
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-97371-8

Compromised anti-tumor–immune features of myeloid cell components in chronic myeloid leukemia patients
Cited by: 1
Author(s): Ibuki Harada, Haruka Sasaki, Koichi Murakami, Akira Nishiyama, Jun Nakabayashi, Motohide Ichino, Tatsuya Miyazaki, Ken Kumagai, Kenji Matsumoto, Maki Hagihara, Wataru Kawase, Takayoshi Tachibana, Masatsugu Tanaka, T. Saito, Heiwa Kanamori, Hiroyuki Fujita, Shin Fujisawa, Hitoshi Nakajima, Tomohide Tamura
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-94564-z

Interpretable deep recommender system model for prediction of kinase inhibitor efficacy across cancer cell lines
Cited by: 6
Author(s): Krzysztof Koras, Ewa Kizling, Dilafruz Juraeva, Eike Staub, Ewa Szczurek
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2021.636591

Molecular Classification Based on Prognostic and Cell Cycle-Associated Genes in Patients With Colon Cancer
Cited by: 7
Author(s): Zhiyuan Zhang, Meiling Ji, Jie Li, Qi Wu, Yuesheng Huang, Guodong He, Jiacheng Xu
Software Mentions: 2
Published: over 4 years ago

10.3389/fnins.2020.00479

Birth Weight and Stroke in Adult Life: Genetic Correlation and Causal Inference With Genome-Wide Association Data Sets
Cited by: 11
Author(s): Ting Wang, Zaixiang Tang, Xinghao Yu, Yixing Gao, Fengjun Guan, Bai Wei, Shuiping Huang, Junnian Zheng, Ping Zeng
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.623739

Probiotics Bacillus licheniformis Improves Intestinal Health of Subclinical Necrotic Enteritis-Challenged Broilers
Cited by: 29
Author(s): Liugang Kan, Fangshen Guo, Yan Liu, Van Hieu Pham, Yuming Guo, Weihong Zhong
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2021.631943

Hepatic Steatosis Predicts Higher Incidence of Recurrence in Colorectal Cancer Liver Metastasis Patients
Cited by: 7
Author(s): Haiyan Chen, Siqi Dai, Yunxia Fang, Liubo Chen, Kai Jiang, Qichun Wei, Kefeng Ding
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2021.619517

Establishment of a Macrophage Phenotypic Switch Related Prognostic Signature in Patients With Pancreatic Cancer
Cited by: 12
Author(s): Muxing Li, Hangyan Wang, Chunhui Yuan, Zhaolai Ma, Bin Jiang, Lei Li, Li Zhang, Dianrong Xiu
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-89252-x

Effect of plane of nutrition in early life on the transcriptome of visceral adipose tissue in Angus heifer calves
Cited by: 8
Author(s): Kate Keogh, A. K. Kelly, David A. Kenny
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2018.00056

Auxin-to-Gibberellin Ratio as a Signal for Light Intensity and Quality in Regulating Soybean Growth and Matter Partitioning
Cited by: 53
Author(s): Feng Yang, Yuanfang Fan, Xiaoling Wu, Yajiao Cheng, Qinlin Liu, Lingyang Feng, Junxu Chen, Zhong Lin Wang, Xiaochun Wang, Taiwen Yong, Weiguo Liu, Jiang Liu, Junbo Du, Kai Shu, Wenyu Yang
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-019-51525-x

Hematopoietic Npc1 mutation shifts gut microbiota composition in Ldlr−/− mice on a high-fat, high-cholesterol diet
Cited by: 3
Author(s): Tom Houben, John Penders, Yvonne Oligschlaeger, Inês Magro dos Reis, Marc Jan Bonder, Debby P. Y. Koonen, Jingyuan Fu, Marten H. Hofker, Ronit Shiri-Sverdlov
Software Mentions: 2
Published: about 6 years ago

10.3389/fnins.2019.01033

Enzymatic Digestion of Hyaluronan-Based Brain Extracellular Matrix in vivo Can Induce Seizures in Neonatal Mice
Cited by: 12
Author(s): Alena Balashova, Vladimir Pershin, Olga Zaborskaya, Natalia Tkachenko, Andrey Mironov, Evgenii L. Guryev, Л. К. Курбатов, Murat R. Gainullin, И.В. Мухина
Software Mentions: 2
Published: about 6 years ago

10.3389/fonc.2019.00291

Identification of RE1-Silencing Transcription Factor as a Promoter of Metastasis in Pancreatic Cancer
Cited by: 6
Author(s): Haoyi Jin, Peng Liu, Lingming Kong, Xiang Fei, Yang Gao, Tianyu Wu, Defeng Sun
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2019.00310

Overexpression of ASPM, CDC20, and TTK Confer a Poorer Prognosis in Breast Cancer Identified by Gene Co-expression Network Analysis
Cited by: 50
Author(s): Jianing Tang, Mengxin Lü, Qiuxia Cui, Dan Zhang, Deguang Kong, Xing Liao, Jiangbo Ren, Yan Gong
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-48059-7

Alterations in lipid metabolism of spinal cord linked to amyotrophic lateral sclerosis
Cited by: 84
Author(s): Adriano B. Chaves‐Filho, Isabella Fernanda Dantas Pinto, Lucas S. Dantas, André Machado Xavier, Alex Inague, Rodrigo L. Faria, Marisa Helena Gennari de Medeiros, Isaías Glezer, Marcos Yukio Yoshinaga, Sayuri Miyamoto
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-82707-1

Effects of maoto (ma-huang-tang) on host lipid mediator and transcriptome signature in influenza virus infection
Cited by: 4
Author(s): Akinori Nishi, Noriko Kaifuchi, Chika Shimobori, Katsuya Ohbuchi, Seiichi Iizuka, Aiko Sugiyama, Keisuke Ogura, Masahiro Yamamoto, Haruo Kuroki, Shigeki Nabeshima, Ayako Yachie‐Kinoshita, Yoshikazu Matsuoka, Hiroaki Kitano
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-55983-1

N-Octanoyl-Dopamine inhibits cytokine production in activated T-cells and diminishes MHC-class-II expression as well as adhesion molecules in IFNγ-stimulated endothelial cells
Cited by: 2
Author(s): Björn B. Hofmann, Nicolas Krapp, Yingchun Li, Carolina De La Torre, Marloes Sol, Jana D. Braun, M Kolibabka, Prama Pallavi, Bernhard K. Krämer, Benito A. Yard, Anna-Isabelle Kälsch
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpsyt.2020.512761

Review of the Neural Processes of Working Memory Training: Controlling the Impulse to Throw the Baby Out With the Bathwater
Cited by: 13
Author(s): Samantha Brooks, Rhiannon Mackenzie-Phelan, Jamie L. Tully, Helgi B. Schiöth
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-59412-6

Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth
Cited by: 6
Author(s): Yvonne Mullins, Kate Keogh, David A. Kenny, A. K. Kelly, Padraig O’ Boyle, Sinéad M. Waters
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-82692-5

Complete chloroplast genomes shed light on phylogenetic relationships, divergence time, and biogeography of Allioideae (Amaryllidaceae)
Cited by: 16
Author(s): Ju Namgung, Hoang Dang Khoa, Changkyun Kim, Hyeok Jae Choi, Joo‐Hwan Kim
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-58923-6

The Golgi Glycoprotein MGAT4D is an Intrinsic Protector of Testicular Germ Cells From Mild Heat Stress
Cited by: 8
Author(s): Ayodélé Akintayo, Meng Liang, Boris Bartholdy, Frank Batista, Jennifer Aguilan, Jillian Prendergast, Afsana Sabrin, Subha Sundaram, Pamela Stanley
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpsyg.2019.00411

Agency and Bandura’s Model of Triadic Reciprocal Causation: An Exploratory Mobility Study Among Metrorail Commuters in the Western Cape, South Africa
Cited by: 14
Author(s): Zinette Bergman, Manfred Max Bergman, Andrew Thatcher
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2019.01446

LDHA Promotes Oral Squamous Cell Carcinoma Progression Through Facilitating Glycolysis and Epithelial–Mesenchymal Transition
Cited by: 60
Author(s): Hao Cai, Jiaxin Li, Yadong Zhang, Yan Liao, Yue Zhu, Cheng Wang, Jinsong Hou
Software Mentions: 2
Published: almost 6 years ago

10.3389/fphar.2020.00932

1H NMR-Based Metabolomics Coupled With Molecular Docking Reveal the Anti-Diabetic Effects and Potential Active Components of Berberis vernae on Type 2 Diabetic Rats
Cited by: 22
Author(s): Qi Li, Chengcheng Zhao, Yunsen Zhang, Huan Du, Tong Xu, Xinmei Xu, Jing Zhang, Tingting Kuang, Xiulan Lai, Gang Fan
Software Mentions: 2
Published: over 5 years ago

10.3389/fpsyg.2018.01311

A Growth-Curve Analysis of the Effects of Future-Thought Priming on Insight and Analytical Problem-Solving
Cited by: 4
Author(s): Truelove-Hill Monica, Brian Erickson, Julia Anderson, Mary Kossoyan, John Kounios
Software Mentions: 2
Published: over 7 years ago

10.3389/fpsyg.2017.01748

EEG Differentiation Analysis and Stimulus Set Meaningfulness
Cited by: 14
Author(s): Armand Mensen, William Marshall, Giulio Tononi
Software Mentions: 2
Published: about 8 years ago

10.3389/fonc.2021.697534

Multi-Omics Analysis of the Expression and Prognosis for FKBP Gene Family in Renal Cancer
Cited by: 9
Author(s): Zeqiang Sun, Qin Xin, Fang Juan-juan, Yongxin Tang, Yi‐Ming Fan
Software Mentions: 2
Published: over 4 years ago

10.1155/2019/8913287

An Investigation about Gene Modules Associated with hDPSC Differentiation for Adolescents
Cited by: 0
Author(s): Wenjing Xu, Jianqiang Li, Juan Li, Ji-Jiang Yang, Qing Wang, Bo Liu, Weiliang Qiu
Software Mentions: 2
Published: over 6 years ago

10.3389/fmolb.2021.673044

Altered Glycosylation in the Aging Heart
Cited by: 6
Author(s): Patricia Franzka, Lynn Krüger, Mona K Schurig, Maja Olecka, Steve Hoffmann, Véronique Blanchard, Christian A. Hübner
Software Mentions: 2
Published: over 4 years ago

10.1038/s41392-021-00741-x

Detection of an anti-angina therapeutic module in the effective population treated by a multi-target drug Danhong injection: a randomized trial
Cited by: 20
Author(s): Jun Lee, Dandan Li, Wei Dong, Yuqi Liu, Yang Wu, Tang Daxuan, Fuchun Zhang, Meng Qiu, Qi Hua, Jun He, Jun Li, Bin Du, Tinghai Du, Lin-Lin Niu, Xuejun Jiang, Bo Cui, Jiang-Bin Chen, Wang Yanggan, Hairong Wang, Qin Yu, Jie He, Yilin Mao, Xiao-Fang Bin, Yue Deng, Yudan Tian, Qinghua Han, Dajin Liu, Ling Duan, Mingjing Zhao, Cuiying Zhang, Haiying Dai, Ze-Hua Li, Ying Xiao, Hu Y, Xiaoyu Huang, Kun Xing, Xin Jiang, Chaofeng Liu, Jing An, Fengchun Li, Tao Tao, Jinfa Jiang, Ying Yang, Yao-Rong Dong, Lei Zhang, Guang Fu, Ying Li, Shouqiang Huang, Liping Dou, Lei Sun, Yingqiang Zhao, Jie Li, Yun Xia, Jun Lee, Fan Liu, Weiwei He, Ying Li, Jiangning Tan, Lin Yang, Yabin Zhou, Jingyuan Yang, Guiping Ma, Huijun Chen, Heping Li, Zhongwu Liu, Jian-Xiong Liu, Xiaojia Luo, Xiao-Hong Bin, Yanan Yu, Haixia Dang, Bing Li, Fei Teng, Wangmin Qiao, Xiaolong Zhu, Bingwei Chen, Qiguang Chen, Chia–Rui Shen, Yongyan Wang, Yundai Chen, Zhong Wang
Software Mentions: 2
Published: about 4 years ago

10.3390/s21134431

Improved Support Vector Machine Enabled Radial Basis Function and Linear Variants for Remote Sensing Image Classification
Cited by: 21
Author(s): Abdul Razaque, Mohamed Ben Haj Frej, Muder Almiani, Munif Alotaibi, Bandar Alotaibi
Software Mentions: 2
Published: over 4 years ago

10.3389/fphar.2020.00357

Prospective Risk Assessment of Medicine Shortages in Europe and Israel: Findings and Implications
Cited by: 21
Author(s): Nenad Miljković, Brian Godman, Milena Kovačević, Piera Polidori, L Tzimis, Torsten Hoppe-Tichy, M. Saar, Ioan Antofie, L Horváth, Thomas De Rijdt, Róbert György Vida, Elena Kkolou, David Preece, Biljana Tubić, Joan Peppard, Alicia Martínez, Cristina García Yubero, Raymond N. Haddad, Dragana Rajinac, Pavle Zelić, Helena Jenzer, Franci Tartar, Gunda Gitler, Martina Jeske, M Davidescu, Guillaume Béraud, Darija Kuruc-Poje, Kristine Sakstrup Haag, Hanne Fischer, Inese Sviestiņa, Gordana Ljubojević, Anne Markestad, Vesna Vujić‐Aleksić, Lana Nežić, Anica Crkvenčić, Johanna Linnolahti, Bogdan Ašanin, Nataša Duborija-Kovačević, Tomasz Bochenek, Isabelle Huys, Branislava Miljković
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.575657

Translating Preclinical Research for Exercise Oncology: Take It to the VO2max
Cited by: 3
Author(s): Donald M. Lamkin, Theodore Garland
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-81040-x

Nerve Growth Factor (NGF) modulates in vitro induced myofibroblasts by highlighting a differential protein signature
Cited by: 3
Author(s): Graziana Esposito, Bijorn Omar Balzamino, Egidio Stigliano, Filippo Biamonte, Andrea Urbani, Alessandra Micera
Software Mentions: 2
Published: almost 5 years ago

10.3389/fphys.2018.00215

Mechanistic Role of Reactive Oxygen Species and Therapeutic Potential of Antioxidants in Denervation- or Fasting-Induced Skeletal Muscle Atrophy
Cited by: 62
Author(s): Jiaying Qiu, Qian Fang, Tongtong Xu, Changyue Wu, Lai Xu, Lingbin Wang, Xiaoming Yang, Shu Yu, Qi Zhang, Fei Ding, Hualin Sun
Software Mentions: 2
Published: over 7 years ago

10.3390/s141222643

Tree Crown Mapping in Managed Woodlands (Parklands) of Semi-Arid West Africa Using WorldView-2 Imagery and Geographic Object Based Image Analysis
Cited by: 43
Author(s): Martin Karlson, Heather Reese, Madelene Ostwald
Software Mentions: 2
Published: about 11 years ago

10.7150/thno.60028

Targeting ATF4-dependent pro-survival autophagy to synergize glutaminolysis inhibition
Cited by: 27
Author(s): Shuting Han, Liyuan Zhu, Yiran Zhu, Yuan Meng, Jiaqiu Li, Ping Song, Neelum Aziz Yousafzai, Lifeng Feng, Miaoqin Chen, Yanmei Wang, Hongchuan Jin, Xian Wang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fphar.2019.01310

Probing the Druggablility on the Interface of the Protein–Protein Interaction and Its Allosteric Regulation Mechanism on the Drug Screening for the CXCR4 Homodimer
Cited by: 5
Author(s): Liting Shen, Yuan Yuan, Yanzhi Guo, Menglong Li, Chuan Li, Xuemei Pu
Software Mentions: 2
Published: about 6 years ago

10.3389/fonc.2020.572919

Identification of a Transcriptional Prognostic Signature From Five Metabolic Pathways in Oral Squamous Cell Carcinoma
Cited by: 9
Author(s): Xiang Wu, Yuan Yao, Zhongwu Li, Huan Ge, Dongmiao Wang, Yanling Wang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmolb.2021.727481

Characterization of METTL7B to Evaluate TME and Predict Prognosis by Integrative Analysis of Multi-Omics Data in Glioma
Cited by: 8
Author(s): Xiaochuan Chen, Chao Li, Ying Liu, Shihong Wu, Wei Liu, Ting Lin, Miaomiao Li, Youliang Weng, Wanzun Lin, Sufang Qiu
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-80945-3

Weighted gene co-expression network analysis of the salt-responsive transcriptomes reveals novel hub genes in green halophytic microalgae Dunaliella salina
Cited by: 26
Author(s): Bahman Panahi, Mohammad Amin Hejazi
Software Mentions: 2
Published: almost 5 years ago

10.1155/2015/734984

A Novel Ontology Approach to Support Design for Reliability considering Environmental Effects
Cited by: 1
Author(s): Bo Sun, Yu Liu, Tianyuan Ye, Yi Ren
Software Mentions: 2
Published: almost 11 years ago

10.3389/fonc.2019.01325

Novel Breast-Specific Long Non-coding RNA LINC00993 Acts as a Tumor Suppressor in Triple-Negative Breast Cancer
Cited by: 25
Author(s): Shipeng Guo, Jiang Lei, Kai Tao, Chen Chen, Haochen Yu, Shengchun Liu
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41398-018-0306-4

Temporal proteomic profiling of postnatal human cortical development
Cited by: 17
Author(s): Michael S. Breen, Süreyya Özcan, Jordan M. Ramsey, Zichen Wang, Avi Ma’ayan, Nitin Rustogi, Michael G. Gottschalk, Maree J. Webster, Cynthia Shannon Weickert, Joseph D. Buxbaum, Sabine Bahn
Software Mentions: 2
Published: almost 7 years ago

10.3389/fphar.2020.00952

Hypo-Osmotic Loading Induces Expression of IL-6 in Nucleus Pulposus Cells of the Intervertebral Disc Independent of TRPV4 and TRPM7
Cited by: 8
Author(s): Aleksandra Sadowska, Birsen Altinay, Wolfgang Hitzl, Stephen J. Ferguson, Karin Wuertz‐Kozak
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-73654-4

Extensive fragmentation and re-organization of transcription in Systemic Lupus Erythematosus
Cited by: 8
Author(s): Vasilis F. Ntasis, Nikolaos Panousis, Maria G Tektonidou, Emmanouil T. Dermitzakis, Dimitrios T. Boumpas, George Βertsias, Christoforos Nikolaou
Software Mentions: 2
Published: about 5 years ago

10.3390/molecules23010186

Synthesis, Anti-Proliferative Activity Evaluation and 3D-QSAR Study of Naphthoquinone Derivatives as Potential Anti-Colorectal Cancer Agents
Cited by: 9
Author(s): Julio Acuña, Jhoan Piermattey, Daneiva Caro, Sven Bannwitz, L Barrios, Juan‐Felipe López, Yanet Ocampo, Ricardo Vivas‐Reyes, Fabio Aristizábal, Ricardo Gaitán, Klaus Müller, Luís Franco
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12918-017-0456-7

NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis
Cited by: 1
Author(s): Duanchen Sun, Yinliang Liu, Yu Xia, Lingyun Wu
Software Mentions: 2
Published: about 8 years ago

10.1111/jcmm.15867

Mutations in the notch signalling pathway are associated with enhanced anti‐tumour immunity in colorectal cancer
Cited by: 14
Author(s): Fei Wang, Jie Long, Liang Li, Zhibin Zhao, Wei Fang, Yuan Yao, Wei Qiu, Zixin Wu, Qingqing Luo, Wei Liu, Yibo Quan, Zhe‐Xiong Lian, Jie Cao
Software Mentions: 2
Published: about 5 years ago

10.1111/jcmm.15560

LncRNA‐mRNA expression profiles and functional networks in osteoclast differentiation
Cited by: 16
Author(s): Wenjie Liu, Zhaofeng Li, Zhaopeng Cai, Zhongyu Xie, Jinteng Li, Ming Li, Shuizhong Cen, Simin Tang, Guoyan Zheng, Guiwen Ye, Huilan Su, Shan Wang, Peng Wang, Huiyong Shen, Yanfeng Wu
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules23071527

Investigations of Structural Requirements for BRD4 Inhibitors through Ligand- and Structure-Based 3D QSAR Approaches
Cited by: 11
Author(s): Adeena Tahir, Rima D. Alharthy, Saadia Naseem, Natasha Mahmood, Mahmood Ahmed, Khuram Shahzad, Muhammad Usman Akhtar, Abdul Hameed, Irfan Sadiq, Haq Nawaz, Muhammad Muddassar
Software Mentions: 2
Published: over 7 years ago

10.1111/jcmm.14856

STAT1 and its related molecules as potential biomarkers in <i>Mycobacterium tuberculosis</i> infection
Cited by: 41
Author(s): Xing‐hao Yi, Bo Zhang, Yurong Fu, Zhengjun Yi
Software Mentions: 2
Published: almost 6 years ago

10.1111/jcmm.15357

CMap analysis identifies Atractyloside as a potential drug candidate for type 2 diabetes based on integration of metabolomics and transcriptomics
Cited by: 9
Author(s): Hailong Li, Xiaodong Shi, Hua Jiang, Junren Kang, Miao Yu, Qifei Li, Kang Yu, Zhengju Chen, Hui Pan, Wei Chen
Software Mentions: 2
Published: over 5 years ago

10.7150/jca.47918

New novel non-MHC genes were identified for cervical cancer with an integrative analysis approach of transcriptome-wide association study
Cited by: 6
Author(s): Haimiao Chen, Ting Wang, Shuiping Huang, Ping Zeng
Software Mentions: 2
Published: almost 5 years ago

10.1007/s10858-015-9908-9

Development of a method for reconstruction of crowded NMR spectra from undersampled time-domain data
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Author(s): Takumi Ueda, Chie Yoshiura, Masahiko Matsumoto, Yutaka Kofuku, Junya Okude, Kazunori Kondo, Yutaro Shiraishi, Koh Takeuchi, Ichio Shimada
Software Mentions: 2
Published: almost 11 years ago

10.4172/1948-593X.1000120

Systemic Transcriptional Alterations of Innate and Adaptive Immune Signaling Pathways in Atherosclerosis, Ischemia Stroke, and Myocardial Infarction
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Author(s): Taura L. Barr, Reynal L VanGilder, Ryan Seiberg, Ashely Petrone, Paul D. Chantler, Chiang-Ching Huang
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12889-021-10283-0

Examining potential effects of non-occupational post-exposure prophylaxis (nPEP) on sexual behaviors of Chinese men who have sex with men: a cross-sectional study
Cited by: 0
Author(s): Haochu Li, Ran Wei, Jason J. Ong, Eun Sook Kim, Traci L. Weinstein, Xiaofu Ning, Wei Ma
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA118.003280

A dynamic transcriptomic atlas of cytokine-induced killer cells
Cited by: 7
Author(s): Mingyao Meng, Lin Li, Ruhong Li, Wenju Wang, Yang Chen, Youhua Xie, Rui Han, Kai Zhu, Wenwen Huang, Lili Yang, Shuo Li, Jianlin Shi, Wenyong Tan, Hui Gao, Yiyi Zhao, Yang Li, Tan Jinquan, Zongliu Hou
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12885-020-6676-z

Identification of potential novel biomarkers to differentiate malignant thyroid nodules with cytological indeterminate
Cited by: 9
Author(s): Dandan Wu, Shudong Hu, Yongzhong Hou, Yingying He, Shubai Liu
Software Mentions: 2
Published: over 5 years ago

10.1002/advs.202100311

Identification and Characterization of Robust Hepatocellular Carcinoma Prognostic Subtypes Based on an Integrative Metabolite‐Protein Interaction Network
Cited by: 23
Author(s): Di Chen, Yiran Zhang, Wen Wang, Huan Chen, Ting Ling, Renyu Yang, Yawei Wang, Chao Duan, Yu Liu, Xin Guo, Lei Fang, Wuguang Liu, Xiumei Liu, Jing Liu, Wuxiyar Otkur, Huan Qi, Xiaolong Liu, Tian Xia, Hong‐xu Liu, Hulin Piao
Software Mentions: 2
Published: over 4 years ago

10.1111/1365-2656.12630

Analysing animal social network dynamics: the potential of stochastic actor-oriented models
Cited by: 39
Author(s): David N. Fisher, Amiyaal Ilany, Matthew J. Silk, Tom Tregenza
Software Mentions: 2
Published: almost 9 years ago

10.1186/1423-0127-17-S1-S38

A maternal low protein diet has pronounced effects on mitochondrial gene expression in offspring liver and skeletal muscle; protective effect of taurine
Cited by: 40
Author(s): Ole Hartvig Mortensen, Hanne Olsen, Lis Frandsen, Peter E. Nielsen, Finn Cilius Nielsen, Niels Grunnet, Bjørn Quistorff
Software Mentions: 2
Published: almost 16 years ago

10.1186/s13229-017-0130-3

Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism
Cited by: 44
Author(s): Rui Chen, Lea K. Davis, Stephen J. Guter, Qiang Wei, Suma Jacob, Melissa H. Potter, Nancy J. Cox, Edwin H. Cook, James S. Sutcliffe, Bingshan Li
Software Mentions: 2
Published: over 8 years ago

10.1172/jci.insight.137926

Human Tregs at the materno-fetal interface show site-specific adaptation reminiscent of tumor Tregs
Cited by: 19
Author(s): Judith Wienke, Laura Brouwers, Leone M. van der Burg, Michal Mokrý, Rianne C. Scholman, Floris Groenendaal, Bas B. van Rijn, Femke van Wijk
Software Mentions: 2
Published: about 5 years ago

10.1186/1748-5908-3-49

The intellectual structure and substance of the knowledge utilization field: A longitudinal author co-citation analysis, 1945 to 2004
Cited by: 119
Author(s): Carole A. Estabrooks, Linda Derksen, Connie Winther, John N. Lavis, Shannon D. Scott, Lars Wallin, Joanne Profetto‐McGrath
Software Mentions: 2
Published: about 17 years ago

10.18632/aging.103486

Characterization of aberrant pathways activation and immune microenviroment of BK virus associated nephropathy
Cited by: 5
Author(s): Yongguang Liu, Song Zhou, Jianmin Hu, Wentao Xu, Ding Liu, Jun Liu, Guorong Liao, Zhiqiang Guo, Yuzhu Li, Siqiang Yang, Shichao Li, Hua Chen, Ying Guo, Ming Li, Li‐pei Fan, Liuyang Li, Anqi Lin, Ming Zhao
Software Mentions: 2
Published: over 5 years ago

10.1002/jbm4.10195

Body Weight and Body Mass Index Influence Bone Mineral Density in Late Adolescence in a Two‐Year Follow‐Up Study. The Tromsø Study: Fit Futures
Cited by: 2
Author(s): Ole Andreas Nilsen, Luai A. Ahmed, Anne Winther, Tore Christoffersen, Gyrd Thrane, Elin Kristin Evensen, Anne‐Sofie Furberg, Guri Grimnes, Elaine Dennison, Nina Emaus
Software Mentions: 2
Published: over 6 years ago

10.1186/s12929-021-00751-5

AUY922 induces retinal toxicity through attenuating TRPM1
Cited by: 6
Author(s): Che-Hung Shen, Chi-Hsun Hsieh, Kuan-Ying Jiang, Chih‐Yu Lin, Nai‐Jung Chiang, Tingwei Li, Chen‐Tung Yen, Wan-Ju Chen, Daw-Yang Hwang, Li-Tzong Chen
Software Mentions: 2
Published: over 4 years ago

10.1186/s12870-018-1613-x

Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation
Cited by: 16
Author(s): Chung Wen Lin, Shih Feng Fu, Yu Ju Liu, Chi Chien Chen, Ching Han Chang, Yau Wen Yang, Hao Huang
Software Mentions: 2
Published: almost 7 years ago

10.3390/microorganisms9020240

Shedding Light on the African Enigma: In Vitro Testing of Homo sapiens-Helicobacter pylori Coevolution
Cited by: 9
Author(s): Bruno Cavadas, Marina Concli Leite, Nicole Pedro, Ana C. Magalhães, Joana Melo, Marcelo Correia, Valdemar Máximo, Rui Camacho, Nuno A. Fonseca, Céu Figueiredo, Luı́sa Pereira
Software Mentions: 2
Published: almost 5 years ago

10.1186/s41065-020-00127-z

Investigation of the gene co-expression network and hub genes associated with acute mountain sickness
Cited by: 3
Author(s): Yue Cune Chang, Jiange He, Jiqiang Tang, Kai Chen, Zhenguo Wang, Qun Xia, Hai Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-020-00923-9

The interplay between host genetics and the gut microbiome reveals common and distinct microbiome features for complex human diseases
Cited by: 64
Author(s): Fengzhe Xu, Yuanqing Fu, Tao Sun, Zengliang Jiang, Zelei Miao, Menglei Shuai, Wanglong Gou, Chu-wen Ling, Jian Yang, Jun Wang, Yuming Chen, Ju‐Sheng Zheng
Software Mentions: 2
Published: about 5 years ago

10.1186/s12870-021-02927-5

The mechanism of sesame resistance against Macrophomina phaseolina was revealed via a comparison of transcriptomes of resistant and susceptible sesame genotypes
Cited by: 11
Author(s): Wenqing Yan, Yunxia Ni, Xintao Liu, Hui Zhao, Yanhua Chen, Min Jiang, Mingming Liu, Hongyan Liu, Bin Tian
Software Mentions: 2
Published: over 4 years ago

10.1002/hsr2.202

A prognostic risk model based on immune‐related genes predicts overall survival of patients with hepatocellular carcinoma
Cited by: 2
Author(s): Banglun Pan, Lin Liu, Wei Li
Software Mentions: 2
Published: about 5 years ago

10.1038/s41438-021-00537-8

Comparative transcriptomic analysis highlights contrasting levels of resistance of Vitis vinifera and Vitis amurensis to Botrytis cinerea
Cited by: 10
Author(s): Ran Wan, Chunfang Guo, Xiaoqing Hou, Yanxun Zhu, Min Gao, Xiaoyan Hu, Songlin Zhang, Chen Jiao, Rongrong Guo, Zhi Li, Xiping Wang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12934-019-1229-3

A metabolic reconstruction of Lactobacillus reuteri JCM 1112 and analysis of its potential as a cell factory
Cited by: 18
Author(s): Thordis Kristjansdottir, Elleke Fenna Bosma, Filipe Branco dos Santos, Emre Özdemir, Markus J. Herrgård, Lucas França, Bruno Sommer Ferreira, Alex Toftgaard Nielsen, Steinn Guðmundsson
Software Mentions: 2
Published: about 6 years ago

10.1186/s12870-021-02932-8

Development of genic KASP SNP markers from RNA-Seq data for map-based cloning and marker-assisted selection in maize
Cited by: 11
Author(s): Zhengjie Chen, Danling Tang, Jixing Ni, Peng Li, Le Wang, Jinhong Zhou, Chenyang Li, Hai Long, Lujiang Li, Jian Liu
Software Mentions: 2
Published: over 4 years ago

10.1186/s12934-015-0355-9

Genetic and nutrient modulation of acetyl-CoA levels in Synechocystis for n-butanol production
Cited by: 89
Author(s): Josefine Anfelt, Danuta Kaczmarzyk, Kiyan Shabestary, Björn Renberg, Johan Rockberg, Jens Nielsen, Mathias Uhlén, Elton P. Hudson
Software Mentions: 2
Published: about 10 years ago

10.1093/gigascience/giy163

A critical comparison of technologies for a plant genome sequencing project
Cited by: 39
Author(s): Pirita Paajanen, George Kettleborough, Elena López‐Girona, Michael Giolai, Darren Heavens, David Baker, Ashleigh Lister, Fiorella Cugliandolo, Gail Wilde, Ingo Hein, Iain C. Macaulay, Glenn J. Bryan, Matt Clark
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12934-017-0824-4

Metabolic engineering of Synechococcus elongatus PCC 7942 for improvement of 1,3-propanediol and glycerol production based on in silico simulation of metabolic flux distribution
Cited by: 29
Author(s): Yasutaka Hirokawa, Shingo Matsuo, Hiroyuki Hamada, Fumio Mizutani, Taizo Hanai
Software Mentions: 2
Published: about 8 years ago

10.1186/s12870-020-02817-2

Auxin is involved in arbuscular mycorrhizal fungi-promoted tomato growth and NADP-malic enzymes expression in continuous cropping substrates
Cited by: 17
Author(s): Yu Wang, Wenze Zhang, Weikang Liu, Golam Jalal Ahammed, Wenxu Wen, Shirong Guo, Sheng Shu, Jian Sun
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12870-020-2322-9

Identification of the regulatory networks and hub genes controlling alfalfa floral pigmentation variation using RNA-sequencing analysis
Cited by: 21
Author(s): Huirong Duan, Lirong Wang, Guangxin Cui, Xingyue Zhou, Xiaorong Duan, Hongshan Yang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12934-018-1052-2

Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains
Cited by: 51
Author(s): Ilaria Massaiu, Lorenzo Pasotti, Nikolaus Sonnenschein, Erlinda Rama, Matteo Cavaletti, Paolo Magni, Cinzia Calvio, Markus J. Herrgård
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12870-019-1933-5

De novo transcriptome sequencing and gene expression profiling of Magnolia wufengensis in response to cold stress
Cited by: 38
Author(s): Shixin Deng, Jun Ma, Lili Zhang, Faju Chen, Ziyang Sang, Zhongkui Jia, Ma Li
Software Mentions: 2
Published: over 6 years ago

Projects: pypi: analysis

Science Score: 90/100

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Papers Mentioning analysis 2,036