pypi: analysis | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0231771

Phytoplankton transcriptomic and physiological responses to fixed nitrogen in the California current system
Cited by: 3
Author(s): Irina N. Shilova, Jonathan D. Magasin, Matthew M. Mills, Julie Robidart, Kendra A. Turk‐Kubo, Jonathan P. Zehr
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-73847-x

Differentiating Staphylococcus infection-associated glomerulonephritis and primary IgA nephropathy: a mass spectrometry-based exploratory study
Cited by: 9
Author(s): Anjali A. Satoskar, John P. Shapiro, Mikayla Jones, Cherri Bott, Samir Parikh, Sergey V. Brodsky, Lianbo Yu, Haikady N. Nagaraja, Daniel W. Wilkey, Michael L. Merchant, Jon B. Klein, Tibor Nádasdy, Brad H. Rovin
Software Mentions: 3
Published: about 6 years ago

10.1186/s13045-020-00854-w

Identification of cross-talk between m6A and 5mC regulators associated with onco-immunogenic features and prognosis across 33 cancer types
Cited by: 44
Author(s): Yutong Chen, Jiayi Shen, Dongping Chen, Chengdong Wu, Rui Guo, Panpan Zhang, Jiawei Lv, Wenfei Li, Zi‐Xian Wang, Yu-Pei Chen
Software Mentions: 3
Published: over 6 years ago

10.3390/molecules23010186

Synthesis, Anti-Proliferative Activity Evaluation and 3D-QSAR Study of Naphthoquinone Derivatives as Potential Anti-Colorectal Cancer Agents
Cited by: 9
Author(s): Julio Acuña, Jhoan Piermattey, Daneiva Caro, Sven Bannwitz, L Barrios, Juan‐Felipe López, Yanet Ocampo, Ricardo Vivas‐Reyes, Fabio Aristizábal, Ricardo Gaitán, Klaus Müller, Luís Franco
Software Mentions: 2
Published: over 8 years ago

10.1186/s12918-017-0456-7

NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis
Cited by: 1
Author(s): Duanchen Sun, Yinliang Liu, Yu Xia, Lingyun Wu
Software Mentions: 2
Published: about 9 years ago

10.3390/molecules23071527

Investigations of Structural Requirements for BRD4 Inhibitors through Ligand- and Structure-Based 3D QSAR Approaches
Cited by: 11
Author(s): Adeena Tahir, Rima D. Alharthy, Saadia Naseem, Natasha Mahmood, Mahmood Ahmed, Khuram Shahzad, Muhammad Usman Akhtar, Abdul Hameed, Irfan Sadiq, Haq Nawaz, Muhammad Muddassar
Software Mentions: 2
Published: over 8 years ago

10.1111/jcmm.15867

Mutations in the notch signalling pathway are associated with enhanced anti‐tumour immunity in colorectal cancer
Cited by: 14
Author(s): Fei Wang, Jie Long, Liang Li, Zhibin Zhao, Wei Fang, Yuan Yao, Wei Qiu, Zixin Wu, Qingqing Luo, Wei Liu, Yibo Quan, Zhe‐Xiong Lian, Jie Cao
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-37489-4

Metabolism as an early predictor of DPSCs aging
Cited by: 26
Author(s): Dannie Macrin, Ammar Alghadeer, Yan Ting Zhao, Jason W. Miklas, Abdiasis M. Hussein, Damien Detraux, Aaron M. Robitaille, Anup Madan, Randall T. Moon, Yuliang Wang, Arikketh Devi, Julie Mathieu, Hannele Ruohola‐Baker
Software Mentions: 2
Published: over 7 years ago

10.1111/jcmm.15357

CMap analysis identifies Atractyloside as a potential drug candidate for type 2 diabetes based on integration of metabolomics and transcriptomics
Cited by: 9
Author(s): Hailong Li, Xiaodong Shi, Hua Jiang, Junren Kang, Miao Yu, Qifei Li, Kang Yu, Zhengju Chen, Hui Pan, Wei Chen
Software Mentions: 2
Published: over 6 years ago

10.1111/jcmm.15560

LncRNA‐mRNA expression profiles and functional networks in osteoclast differentiation
Cited by: 16
Author(s): Wenjie Liu, Zhaofeng Li, Zhaopeng Cai, Zhongyu Xie, Jinteng Li, Ming Li, Shuizhong Cen, Simin Tang, Guoyan Zheng, Guiwen Ye, Huilan Su, Shan Wang, Peng Wang, Huiyong Shen, Yanfeng Wu
Software Mentions: 2
Published: about 6 years ago

10.1111/jcmm.14856

STAT1 and its related molecules as potential biomarkers in Mycobacterium tuberculosis infection
Cited by: 41
Author(s): Xing‐hao Yi, Bo Zhang, Yurong Fu, Zhengjun Yi
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-38989-7

Long Non-coding RNAs Coordinate Developmental Transitions and Other Key Biological Processes in Grapevine
Cited by: 29
Author(s): Garima Bhatia, Shailesh Sharma, Santosh Kumar Upadhyay, Kashmir Singh
Software Mentions: 2
Published: over 7 years ago

10.1186/s12889-021-10283-0

Examining potential effects of non-occupational post-exposure prophylaxis (nPEP) on sexual behaviors of Chinese men who have sex with men: a cross-sectional study
Cited by: 0
Author(s): Haochu Li, Ran Wei, Jason J. Ong, Eun Sook Kim, Traci L. Weinstein, Xiaofu Ning, Wei Ma
Software Mentions: 2
Published: over 5 years ago

10.7150/jca.47918

New novel non-MHC genes were identified for cervical cancer with an integrative analysis approach of transcriptome-wide association study
Cited by: 6
Author(s): Haimiao Chen, Ting Wang, Shuiping Huang, Ping Zeng
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12885-020-6676-z

Identification of potential novel biomarkers to differentiate malignant thyroid nodules with cytological indeterminate
Cited by: 9
Author(s): Dandan Wu, Shudong Hu, Yongzhong Hou, Yingying He, Shubai Liu
Software Mentions: 2
Published: over 6 years ago

10.1002/advs.202100311

Identification and Characterization of Robust Hepatocellular Carcinoma Prognostic Subtypes Based on an Integrative Metabolite‐Protein Interaction Network
Cited by: 23
Author(s): Di Chen, Yiran Zhang, Wen Wang, Huan Chen, Ting Ling, Renyu Yang, Yawei Wang, Chao Duan, Yu Liu, Xin Guo, Lei Fang, Wuguang Liu, Xiumei Liu, Jing Liu, Wuxiyar Otkur, Huan Qi, Xiaolong Liu, Tian Xia, Hong‐xu Liu, Hulin Piao
Software Mentions: 2
Published: over 5 years ago

10.1186/s12929-021-00751-5

AUY922 induces retinal toxicity through attenuating TRPM1
Cited by: 6
Author(s): Che-Hung Shen, Chi-Hsun Hsieh, Kuan-Ying Jiang, Chih‐Yu Lin, Nai‐Jung Chiang, Tingwei Li, Chen‐Tung Yen, Wan-Ju Chen, Daw-Yang Hwang, Li-Tzong Chen
Software Mentions: 2
Published: about 5 years ago

10.1186/s13229-017-0130-3

Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism
Cited by: 44
Author(s): Rui Chen, Lea K. Davis, Stephen J. Guter, Qiang Wei, Suma Jacob, Melissa H. Potter, Nancy J. Cox, Edwin H. Cook, James S. Sutcliffe, Bingshan Li
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.RA118.003280

A dynamic transcriptomic atlas of cytokine-induced killer cells
Cited by: 7
Author(s): Mingyao Meng, Lin Li, Ruhong Li, Wenju Wang, Yang Chen, Youhua Xie, Rui Han, Kai Zhu, Wenwen Huang, Lili Yang, Shuo Li, Jianlin Shi, Wenyong Tan, Hui Gao, Yiyi Zhao, Yang Li, Tan Jinquan, Zongliu Hou
Software Mentions: 2
Published: almost 8 years ago

10.18632/aging.103486

Characterization of aberrant pathways activation and immune microenviroment of BK virus associated nephropathy
Cited by: 5
Author(s): Yongguang Liu, Song Zhou, Jianmin Hu, Wentao Xu, Ding Liu, Jun Liu, Guorong Liao, Zhiqiang Guo, Yuzhu Li, Siqiang Yang, Shichao Li, Hua Chen, Ying Guo, Ming Li, Li‐pei Fan, Liuyang Li, Anqi Lin, Ming Zhao
Software Mentions: 2
Published: over 6 years ago

10.1186/1423-0127-17-S1-S38

A maternal low protein diet has pronounced effects on mitochondrial gene expression in offspring liver and skeletal muscle; protective effect of taurine
Cited by: 40
Author(s): Ole Hartvig Mortensen, Hanne Olsen, Lis Frandsen, Peter E. Nielsen, Finn Cilius Nielsen, Niels Grunnet, Bjørn Quistorff
Software Mentions: 2
Published: almost 17 years ago

10.1007/s10858-015-9908-9

Development of a method for reconstruction of crowded NMR spectra from undersampled time-domain data
Cited by: 3
Author(s): Takumi Ueda, Chie Yoshiura, Masahiko Matsumoto, Yutaka Kofuku, Junya Okude, Kazunori Kondo, Yutaro Shiraishi, Koh Takeuchi, Ichio Shimada
Software Mentions: 2
Published: over 11 years ago

10.1186/s12870-018-1613-x

Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation
Cited by: 16
Author(s): Chung Wen Lin, Shih Feng Fu, Yu Ju Liu, Chi Chien Chen, Ching Han Chang, Yau Wen Yang, Hao Huang
Software Mentions: 2
Published: almost 8 years ago

10.3390/microorganisms9020240

Shedding Light on the African Enigma: In Vitro Testing of Homo sapiens-Helicobacter pylori Coevolution
Cited by: 9
Author(s): Bruno Cavadas, Marina Concli Leite, Nicole Pedro, Ana C. Magalhães, Joana Melo, Marcelo Correia, Valdemar Máximo, Rui Camacho, Nuno A. Fonseca, Céu Figueiredo, Luı́sa Pereira
Software Mentions: 2
Published: over 5 years ago

10.1002/jbm4.10195

Body Weight and Body Mass Index Influence Bone Mineral Density in Late Adolescence in a Two‐Year Follow‐Up Study. The Tromsø Study: Fit Futures
Cited by: 2
Author(s): Ole Andreas Nilsen, Luai A. Ahmed, Anne Winther, Tore Christoffersen, Gyrd Thrane, Elin Kristin Evensen, Anne‐Sofie Furberg, Guri Grimnes, Elaine Dennison, Nina Emaus
Software Mentions: 2
Published: about 7 years ago

10.1172/jci.insight.137926

Human Tregs at the materno-fetal interface show site-specific adaptation reminiscent of tumor Tregs
Cited by: 19
Author(s): Judith Wienke, Laura Brouwers, Leone M. van der Burg, Michal Mokrý, Rianne C. Scholman, Floris Groenendaal, Bas B. van Rijn, Femke van Wijk
Software Mentions: 2
Published: about 6 years ago

10.1186/s40168-020-00923-9

The interplay between host genetics and the gut microbiome reveals common and distinct microbiome features for complex human diseases
Cited by: 64
Author(s): Fengzhe Xu, Yuanqing Fu, Tao Sun, Zengliang Jiang, Zelei Miao, Menglei Shuai, Wanglong Gou, Chu-wen Ling, Jian Yang, Jun Wang, Yuming Chen, Ju‐Sheng Zheng
Software Mentions: 2
Published: about 6 years ago

10.1186/s12870-021-02927-5

The mechanism of sesame resistance against Macrophomina phaseolina was revealed via a comparison of transcriptomes of resistant and susceptible sesame genotypes
Cited by: 11
Author(s): Wenqing Yan, Yunxia Ni, Xintao Liu, Hui Zhao, Yanhua Chen, Min Jiang, Mingming Liu, Hongyan Liu, Bin Tian
Software Mentions: 2
Published: over 5 years ago

10.1186/1748-5908-3-49

The intellectual structure and substance of the knowledge utilization field: A longitudinal author co-citation analysis, 1945 to 2004
Cited by: 119
Author(s): Carole A. Estabrooks, Linda Derksen, Connie Winther, John N. Lavis, Shannon D. Scott, Lars Wallin, Joanne Profetto‐McGrath
Software Mentions: 2
Published: almost 18 years ago

10.1186/s12934-019-1229-3

A metabolic reconstruction of Lactobacillus reuteri JCM 1112 and analysis of its potential as a cell factory
Cited by: 18
Author(s): Thordis Kristjansdottir, Elleke Fenna Bosma, Filipe Branco dos Santos, Emre Özdemir, Markus J. Herrgård, Lucas França, Bruno Sommer Ferreira, Alex Toftgaard Nielsen, Steinn Guðmundsson
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12870-021-02932-8

Development of genic KASP SNP markers from RNA-Seq data for map-based cloning and marker-assisted selection in maize
Cited by: 11
Author(s): Zhengjie Chen, Danling Tang, Jixing Ni, Peng Li, Le Wang, Jinhong Zhou, Chenyang Li, Hai Long, Lujiang Li, Jian Liu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12934-015-0355-9

Genetic and nutrient modulation of acetyl-CoA levels in Synechocystis for n-butanol production
Cited by: 89
Author(s): Josefine Anfelt, Danuta Kaczmarzyk, Kiyan Shabestary, Björn Renberg, Johan Rockberg, Jens Nielsen, Mathias Uhlén, Elton P. Hudson
Software Mentions: 2
Published: about 11 years ago

10.1186/s12934-017-0824-4

Metabolic engineering of Synechococcus elongatus PCC 7942 for improvement of 1,3-propanediol and glycerol production based on in silico simulation of metabolic flux distribution
Cited by: 29
Author(s): Yasutaka Hirokawa, Shingo Matsuo, Hiroyuki Hamada, Fumio Mizutani, Taizo Hanai
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12870-020-02817-2

Auxin is involved in arbuscular mycorrhizal fungi-promoted tomato growth and NADP-malic enzymes expression in continuous cropping substrates
Cited by: 17
Author(s): Yu Wang, Wenze Zhang, Weikang Liu, Golam Jalal Ahammed, Wenxu Wen, Shirong Guo, Sheng Shu, Jian Sun
Software Mentions: 2
Published: over 5 years ago

10.1038/s41438-021-00537-8

Comparative transcriptomic analysis highlights contrasting levels of resistance of Vitis vinifera and Vitis amurensis to Botrytis cinerea
Cited by: 10
Author(s): Ran Wan, Chunfang Guo, Xiaoqing Hou, Yanxun Zhu, Min Gao, Xiaoyan Hu, Songlin Zhang, Chen Jiao, Rongrong Guo, Zhi Li, Xiping Wang
Software Mentions: 2
Published: over 5 years ago

10.1111/1365-2656.12630

Analysing animal social network dynamics: the potential of stochastic actor-oriented models
Cited by: 39
Author(s): David N. Fisher, Amiyaal Ilany, Matthew J. Silk, Tom Tregenza
Software Mentions: 2
Published: over 9 years ago

10.1186/s12870-020-2322-9

Identification of the regulatory networks and hub genes controlling alfalfa floral pigmentation variation using RNA-sequencing analysis
Cited by: 21
Author(s): Huirong Duan, Lirong Wang, Guangxin Cui, Xingyue Zhou, Xiaorong Duan, Hongshan Yang
Software Mentions: 2
Published: over 6 years ago

10.1002/hsr2.202

A prognostic risk model based on immune‐related genes predicts overall survival of patients with hepatocellular carcinoma
Cited by: 2
Author(s): Banglun Pan, Lin Liu, Wei Li
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12934-018-1052-2

Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strains
Cited by: 51
Author(s): Ilaria Massaiu, Lorenzo Pasotti, Nikolaus Sonnenschein, Erlinda Rama, Matteo Cavaletti, Paolo Magni, Cinzia Calvio, Markus J. Herrgård
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12870-019-1933-5

De novo transcriptome sequencing and gene expression profiling of Magnolia wufengensis in response to cold stress
Cited by: 38
Author(s): Shixin Deng, Jun Ma, Lili Zhang, Faju Chen, Ziyang Sang, Zhongkui Jia, Ma Li
Software Mentions: 2
Published: about 7 years ago

10.3390/metabo10020059

TGF-ß1 Induces Changes in the Energy Metabolism of White Adipose Tissue-Derived Human Adult Mesenchymal Stem/Stromal Cells In Vitro
Cited by: 2
Author(s): Olga Hahn, Lena-Christin Ingwersen, Abdel-Rahman Soliman, Mohamed Hamed, Georg Fuellen, Markus Wolfien, Julia Scheel, Olaf Wolkenhauer, Dirk Koczan, Günter Kamp, Kirsten Peters
Software Mentions: 2
Published: over 6 years ago

10.1186/1472-6793-9-23

Transcriptional profile of isoproterenol-induced cardiomyopathy and comparison to exercise-induced cardiac hypertrophy and human cardiac failure
Cited by: 90
Author(s): Cristi L. Galindo, Michael A. Skinner, Mounir Errami, Lyle Olson, David A. Watson, Jing Li, John McCormick, Lauren J. McIver, Neil M. Kumar, Thinh Q. Pham, Harold R. Garner
Software Mentions: 2
Published: almost 17 years ago

10.3390/metabo10080316

Metabolite Profiles of the Relationship between Body Mass Index (BMI) Milestones and Metabolic Risk during Early Adolescence
Cited by: 3
Author(s): Wei Perng, Mohammad L. Rahman, Izzuddin M. Aris, Gregory A. Michelotti, Joanne E. Sordillo, Jorge E. Chavarro, Emily Oken, Marie‐France Hivert
Software Mentions: 2
Published: about 6 years ago

10.3390/metabo11090606

Next-Generation Genome-Scale Metabolic Modeling through Integration of Regulatory Mechanisms
Cited by: 15
Author(s): Carolina H Chung, Dawei Lin, Alec Eames, Sriram Chandrasekaran
Software Mentions: 2
Published: about 5 years ago

10.1186/s12868-015-0212-0

T cell deficiency in spinal cord injury: altered locomotor recovery and whole-genome transcriptional analysis
Cited by: 20
Author(s): David Satzer, Catherine Miller, Jacob R. Maxon, Joseph Voth, Christina DiBartolomeo, Rebecca Mahoney, James R. Dutton, Walter C. Low, Ann M. Parr
Software Mentions: 2
Published: almost 11 years ago

10.1093/gigascience/giy136

Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data
Cited by: 25
Author(s): Fadhl Alakwaa, Breck Yunits, Sijia Huang, Hassam Alhajaji, Lana X. Garmire
Software Mentions: 2
Published: almost 8 years ago

10.1093/gigascience/giy163

A critical comparison of technologies for a plant genome sequencing project
Cited by: 39
Author(s): Pirita Paajanen, George Kettleborough, Elena López‐Girona, Michael Giolai, Darren Heavens, David Baker, Ashleigh Lister, Fiorella Cugliandolo, Gail Wilde, Ingo Hein, Iain C. Macaulay, Glenn J. Bryan, Matt Clark
Software Mentions: 2
Published: almost 8 years ago

10.3390/metabo11080484

The Metabolic Signature of In Vitro Produced Bovine Embryos Helps Predict Pregnancy and Birth after Embryo Transfer
Cited by: 4
Author(s): Isabel Gimeno, Pablo García‐Manrique, S. Carrocera, Cristina López-Hidalgo, Luís Valledor, David Martín-González, E. Gómez
Software Mentions: 2
Published: about 5 years ago

10.18632/aging.103174

Sirt1 gene confers Adriamycin resistance in DLBCL via activating the PCG-1α mitochondrial metabolic pathway
Cited by: 9
Author(s): Zhen Zhou, Dan Ma, Peifan Li, Ping Wang, Ping Liu, Danna Wei, Jun Wang, Qi Zhong, Qin Fang, Jishi Wang
Software Mentions: 2
Published: over 6 years ago

10.1186/s41065-020-00127-z

Investigation of the gene co-expression network and hub genes associated with acute mountain sickness
Cited by: 3
Author(s): Yue Cune Chang, Jiange He, Jiqiang Tang, Kai Chen, Zhenguo Wang, Qun Xia, Hai Li
Software Mentions: 2
Published: over 6 years ago

10.4172/1948-593X.1000120

Systemic Transcriptional Alterations of Innate and Adaptive Immune Signaling Pathways in Atherosclerosis, Ischemia Stroke, and Myocardial Infarction
Cited by: 11
Author(s): Taura L. Barr, Reynal L VanGilder, Ryan Seiberg, Ashely Petrone, Paul D. Chantler, Chiang-Ching Huang
Software Mentions: 2
Published: almost 12 years ago

10.1038/s41598-019-48059-7

Alterations in lipid metabolism of spinal cord linked to amyotrophic lateral sclerosis
Cited by: 84
Author(s): Adriano B. Chaves‐Filho, Isabella Fernanda Dantas Pinto, Lucas S. Dantas, André Machado Xavier, Alex Inague, Rodrigo L. Faria, Marisa Helena Gennari de Medeiros, Isaías Glezer, Marcos Yukio Yoshinaga, Sayuri Miyamoto
Software Mentions: 2
Published: about 7 years ago

10.1186/s12882-021-02447-2

Comprehensive analysis of diabetic nephropathy expression profile based on weighted gene co-expression network analysis algorithm
Cited by: 17
Author(s): Alieh Gholaminejad, Mohammad Fathalipour, Amir Roointan
Software Mentions: 2
Published: over 5 years ago

10.1186/s12915-021-01118-w

An increase of phosphatidylcholines in follicular fluid implies attenuation of embryo quality on day 3 post-fertilization
Cited by: 6
Author(s): Ju Wang, Wei Zheng, Shuoping Zhang, Kunlun Yan, Miao Jin, Huiling Hu, Zhen Ma, Fei Gong, Guangxiu Lu, Yan Ren, Liang Lin, Ge Lin, Liang Hu, Siqi Liu
Software Mentions: 2
Published: about 5 years ago

10.3390/metabo10080325

Comparative Metabolomic Analysis of Dendrobium officinale under Different Cultivation Substrates
Cited by: 23
Author(s): Si-Min Zuo, Hai‐Dong Yu, Weimin Zhang, Qiuping Zhong, Wenxue Chen, Yong‐Huan Yun, Haiming Chen
Software Mentions: 2
Published: about 6 years ago

10.1186/s12891-019-2562-8

Musculoskeletal application and validation of speckle-tracking ultrasonography
Cited by: 13
Author(s): Lars Henrik Frich, Kate Lykke Lambertsen, John Hjarbæk, Jordi S. Dahl, Anders Holsgaard-Larsen
Software Mentions: 2
Published: over 7 years ago

10.1186/s13059-021-02291-5

MEDALT: single-cell copy number lineage tracing enabling gene discovery
Cited by: 14
Author(s): Fang Wang, Qihan Wang, Vakul Mohanty, Shaoheng Liang, Jun Dou, Jiaying Han, Darlan Conterno Minussi, Ruli Gao, Ding Li, Nicholas E. Navin, Ken Chen
Software Mentions: 2
Published: over 5 years ago

10.3390/metabo10050177

Biochemical Characteristics and a Genome-Scale Metabolic Model of an Indian Euryhaline Cyanobacterium with High Polyglucan Content
Cited by: 9
Author(s): Ahmad Ahmad, Ruchi Pathania, Shireesh Srivastava
Software Mentions: 2
Published: over 6 years ago

10.3390/metabo9050081

The Fate of Glutamine in Human Metabolism. The Interplay with Glucose in Proliferating Cells
Cited by: 20
Author(s): Jean‐Pierre Mazat, Stéphane Ransac
Software Mentions: 2
Published: over 7 years ago

10.3390/genes12091303

Yeast as a Tool to Understand the Significance of Human Disease-Associated Gene Variants
Cited by: 10
Author(s): Tiziana Cervelli, Alvaro Galli
Software Mentions: 2
Published: about 5 years ago

10.1155/2021/5511507

The Identification of Childhood Asthma Progression-Related lncRNAs and mRNAs Suitable as Biomarkers Using Weighted Gene Coexpression Network Analysis
Cited by: 4
Author(s): Min Hao, Jinling Zan
Software Mentions: 2
Published: about 5 years ago

10.1097/MD.0000000000026896

LEP as a potential biomarker in prognosis of breast cancer
Cited by: 5
Author(s): Tong Jin, Madhuri Saindane, Kyoung Sik Park, SeongHoon Kim, Sang-Eun Nam, Young-Tae Yoo, Jung‐Hyun Yang, IkJin Yun
Software Mentions: 2
Published: about 5 years ago

10.3390/genes11010106

Hormonal and Molecular Regulation of Phallus Differentiation in a Marsupial Tammar Wallaby
Cited by: 0
Author(s): Yu Chen, Marilyn B. Renfree
Software Mentions: 2
Published: almost 7 years ago

10.3390/genes10030194

Halobacterium salinarum virus ChaoS9, a Novel Halovirus Related to PhiH1 and PhiCh1
Cited by: 11
Author(s): Mike Dyall‐Smith, Peter Palm, Gerhard Wanner, Angela Witte, Dieter Oesterhelt, Friedhelm Pfeiffer
Software Mentions: 2
Published: over 7 years ago

10.3390/genes11040412

Transcriptomic Prediction of Pig Liver-Enriched Gene 1 Functions in a Liver Cell Line
Cited by: 0
Author(s): Zhe Zhang, Zizengchen Wang, Yanna Dang, Jinyang Wang, Sakthidasan Jayaprakash, Huanan Wang, Jin He
Software Mentions: 2
Published: over 6 years ago

10.3390/md15070196

Comprehensive Expression Profiling and Functional Network Analysis of Porphyra-334, One Mycosporine-Like Amino Acid (MAA), in Human Keratinocyte Exposed with UV-radiation
Cited by: 7
Author(s): Sung-Suk Suh, Sung Gu Lee, Ui Joung Youn, Se Jong Han, Il-Chan Kim, Sanghee Kim
Software Mentions: 2
Published: over 9 years ago

10.18632/aging.101749

Expression and gene regulation network of RBM8A in hepatocellular carcinoma based on data mining
Cited by: 48
Author(s): Yan Lin, Rong Liang, Yufen Qiu, Yufeng Lv, Jinyan Zhang, Gang Qin, Chunling Yuan, Zhihui Liu, Yongqiang Li, Donghua Zou, Ying Mao
Software Mentions: 2
Published: over 7 years ago

10.3390/md13010249

LC-MS-Based Metabolomics Study of Marine Bacterial Secondary Metabolite and Antibiotic Production in Salinispora arenicola
Cited by: 42
Author(s): Utpal Bose, Amitha K. Hewavitharana, Yi Kai Ng, P. Nicholas Shaw, John A. Fuerst, Mark P. Hodson
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12920-015-0078-0

Integrative network analysis reveals different pathophysiological mechanisms of insulin resistance among Caucasians and African Americans
Cited by: 15
Author(s): Swapan K. Das, Neeraj Kumar Sharma, Bin Zhang
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2105-7-81

Transcriptomic response to differentiation induction
Cited by: 1
Author(s): Geoffrey W. Patton, Robert M. Stephens, Igor A. Sidorov, Xiao Xue, Richard A. Lempicki, D.S. Dimitrov, Robert H. Shoemaker, Gabriela Tudor
Software Mentions: 2
Published: over 20 years ago

10.3389/fpsyg.2017.01748

EEG Differentiation Analysis and Stimulus Set Meaningfulness
Cited by: 14
Author(s): Armand Mensen, William Marshall, Giulio Tononi
Software Mentions: 2
Published: about 9 years ago

10.3389/fsurg.2021.628848

Efficacy of Prehabilitation Including Exercise on Postoperative Outcomes Following Abdominal Cancer Surgery: A Systematic Review and Meta-Analysis
Cited by: 70
Author(s): Jamie L Waterland, Orla McCourt, Lara Edbrooke, Catherine L Granger, Hilmy Ismail, Bernhard Riedel, Linda Denehy
Software Mentions: 2
Published: over 5 years ago

10.1186/s12936-021-03759-2

The application of drones for mosquito larval habitat identification in rural environments: a practical approach for malaria control?
Cited by: 28
Author(s): Michelle C. Stanton, Patrick Kalonde, Kennedy Zembere, Remy Hoek Spaans, Christopher M. Jones
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-11-176

Gene set enrichment meta-learning analysis: next- generation sequencing versus microarrays
Cited by: 17
Author(s): Gregor Štiglic, Mateja Bajgot, Peter Kokol
Software Mentions: 2
Published: over 16 years ago

10.3390/genes11080883

Exploring the lncRNAs Related to Skeletal Muscle Fiber Types and Meat Quality Traits in Pigs
Cited by: 25
Author(s): Rongyang Li, Bojiang Li, Aiwen Jiang, Yan Cao, Liming Hou, Zengkai Zhang, Xiying Zhang, Kee‐Hong Kim, Wangjun Wu
Software Mentions: 2
Published: about 6 years ago

10.1186/gm519

miR-638 regulates gene expression networks associated with emphysematous lung destruction
Cited by: 63
Author(s): Stephanie A. Christenson, Corry‐Anke Brandsma, Joshua D. Campbell, Darryl A. Knight, Dmitri V. Pechkovsky, James C. Hogg, Wim Timens, Dirkje S. Postma, Marc E. Lenburg, Avrum Spira
Software Mentions: 2
Published: almost 14 years ago

10.3389/fpsyt.2020.512761

Review of the Neural Processes of Working Memory Training: Controlling the Impulse to Throw the Baby Out With the Bathwater
Cited by: 13
Author(s): Samantha Brooks, Rhiannon Mackenzie-Phelan, Jamie L. Tully, Helgi B. Schiöth
Software Mentions: 2
Published: about 6 years ago

10.1186/1755-8794-3-44

Molecular signature of response and potential pathways related to resistance to the HSP90 inhibitor, 17AAG, in breast cancer
Cited by: 26
Author(s): Magdalena Zając, Gonzalo Vázquez Gómez, Javier Benı́tez, Beatriz Martı́nez-Delgado
Software Mentions: 2
Published: about 16 years ago

10.1080/17453670902807474

Notes on the use and interpretation of radiostereometric analysis
Cited by: 56
Author(s): Brian Derbyshire, R. J. Prescott, Martyn Porter
Software Mentions: 2
Published: almost 18 years ago

10.1186/s40170-019-0202-2

Tissue of origin dictates GOT1 dependence and confers synthetic lethality to radiotherapy
Cited by: 28
Author(s): Barbara Scott Nelson, Lin Lin, Daniel M. Kremer, Cristovão M. Sousa, Cecilia Cotta‐Ramusino, Amy L. Myers, Johanna Ramos, Ting Gao, Ilya Kovalenko, Kari Wilder-Romans, Joseph Dresser, Mary A. Davis, Ho‐Joon Lee, Zeribe C. Nwosu, Scott Campit, Oksana Mashadova, Brandon Nicolay, Zachary P. Tolstyka, Christopher J. Halbrook, Sriram Chandrasekaran, John M. Asara, Howard C. Crawford, Lewis C. Cantley, Alec C. Kimmelman, Daniel R. Wahl, Costas A. Lyssiotis
Software Mentions: 2
Published: almost 7 years ago

10.1002/cam4.3400

Immune‐related signature predicts the prognosis and immunotherapy benefit in bladder cancer
Cited by: 29
Author(s): Yejinpeng Wang, Changhong Liang, Mengxue Yu, Yayun Fang, Kaiyu Qian, Gang Wang, Lingao Ju, Yu Xiao, Xinghuan Wang
Software Mentions: 2
Published: about 6 years ago

10.1186/s12909-016-0676-3

A latent trait approach to measuring HIV/AIDS related stigma in healthcare professionals: application of mokken scaling technique
Cited by: 5
Author(s): Keivan Ahmadi, Daniel D. Reidpath, Pascale Allotey, Mohamed Azmi Hassali
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2017.00080

Digital Gene Expression Analysis Provides Insight into the Transcript Profile of the Genes Involved in Aporphine Alkaloid Biosynthesis in Lotus (Nelumbo nucifera)
Cited by: 13
Author(s): Mei Yang, Liming Zhu, Ling Li, Juanjuan Li, Liming Xu, Jia‐Xun Feng, Yanling Liu
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2018.00056

Auxin-to-Gibberellin Ratio as a Signal for Light Intensity and Quality in Regulating Soybean Growth and Matter Partitioning
Cited by: 53
Author(s): Feng Yang, Yuanfang Fan, Xiaoling Wu, Yajiao Cheng, Qinlin Liu, Lingyang Feng, Junxu Chen, Zhong Lin Wang, Xiaochun Wang, Taiwen Yong, Weiguo Liu, Jiang Liu, Junbo Du, Kai Shu, Wenyu Yang
Software Mentions: 2
Published: over 8 years ago

10.3389/fpsyg.2019.00411

Agency and Bandura’s Model of Triadic Reciprocal Causation: An Exploratory Mobility Study Among Metrorail Commuters in the Western Cape, South Africa
Cited by: 14
Author(s): Zinette Bergman, Manfred Max Bergman, Andrew Thatcher
Software Mentions: 2
Published: over 7 years ago

10.1002/cam4.386

S ‐adenosylmethionine blocks osteosarcoma cells proliferation and invasion in vitro and tumor metastasis in vivo : therapeutic and diagnostic clinical applications
Cited by: 46
Author(s): Surabhi Parashar, David Cheishvili, Ani Arakelian, Zahid Hussain, Imrana Tanvir, Haseeb Ahmed Khan, Moshe Szyf, Shafaat A. Rabbani
Software Mentions: 2
Published: over 11 years ago

10.3389/fphys.2018.00215

Mechanistic Role of Reactive Oxygen Species and Therapeutic Potential of Antioxidants in Denervation- or Fasting-Induced Skeletal Muscle Atrophy
Cited by: 62
Author(s): Jiaying Qiu, Qian Fang, Tongtong Xu, Changyue Wu, Lai Xu, Lingbin Wang, Xiaoming Yang, Shu Yu, Qi Zhang, Fei Ding, Hualin Sun
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0134014

Flux Balance Analysis with Objective Function Defined by Proteomics Data—Metabolism of Mycobacterium tuberculosis Exposed to Mefloquine
Cited by: 21
Author(s): Daniel Montezano, Laura Meek, Rashmi Gupta, Luiz E. Bermudez, J.C.M. Bermudez
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0096841

HaplotypeCN: Copy Number Haplotype Inference with Hidden Markov Model and Localized Haplotype Clustering
Cited by: 3
Author(s): Yen-Jen Lin, Yu-Tin Chen, Shu-Ni Hsu, Chieh Yu Peng, Chuan‐Yi Tang, Tzu‐Chen Yen, Wu‐Chiao Hsieh
Software Mentions: 2
Published: over 12 years ago

10.3389/fphys.2017.01010

Weighted Gene Co-expression Network Analysis Identifies FKBP11 as a Key Regulator in Acute Aortic Dissection through a NF-kB Dependent Pathway
Cited by: 31
Author(s): Tao Wang, Xingwei He, Xintian Liu, Yujian Liu, Wenjun Zhang, Qiang Huang, Wanjun Liu, Luyang Xiong, Rong Tan, Hongjie Wang, Hesong Zeng
Software Mentions: 2
Published: almost 9 years ago

10.3389/fphar.2020.00357

Prospective Risk Assessment of Medicine Shortages in Europe and Israel: Findings and Implications
Cited by: 21
Author(s): Nenad Miljković, Brian Godman, Milena Kovačević, Piera Polidori, L Tzimis, Torsten Hoppe-Tichy, M. Saar, Ioan Antofie, L Horváth, Thomas De Rijdt, Róbert György Vida, Elena Kkolou, David Preece, Biljana Tubić, Joan Peppard, Alicia Martínez, Cristina García Yubero, Raymond N. Haddad, Dragana Rajinac, Pavle Zelić, Helena Jenzer, Franci Tartar, Gunda Gitler, Martina Jeske, M Davidescu, Guillaume Béraud, Darija Kuruc-Poje, Kristine Sakstrup Haag, Hanne Fischer, Inese Sviestiņa, Gordana Ljubojević, Anne Markestad, Vesna Vujić‐Aleksić, Lana Nežić, Anica Crkvenčić, Johanna Linnolahti, Bogdan Ašanin, Nataša Duborija-Kovačević, Tomasz Bochenek, Isabelle Huys, Branislava Miljković
Software Mentions: 2
Published: over 6 years ago

10.1111/acel.13229

Underlying features of epigenetic aging clocks in vivo and in vitro
Cited by: 84
Author(s): Zuyun Liu, Diana Leung, Kyra Thrush, Wei Zhao, Scott Ratliff, Toshiko Tanaka, Lauren Schmitz, Jennifer A. Smith, Luigi Ferrucci, Morgan E. Levine
Software Mentions: 2
Published: about 6 years ago

10.3389/fphar.2019.01310

Probing the Druggablility on the Interface of the Protein–Protein Interaction and Its Allosteric Regulation Mechanism on the Drug Screening for the CXCR4 Homodimer
Cited by: 5
Author(s): Liting Shen, Yuan Yuan, Yanzhi Guo, Menglong Li, Chuan Li, Xuemei Pu
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0159790

Phylogeography of Libanotis buchtormensis (Umbelliferae) in Disjunct Populations along the Deserts in Northwest China
Cited by: 7
Author(s): Ping Wang, Xianzhi Zhang, Nan Tang, Jianjun Liu, Liang Xu, Kai Wang
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0064181

Suppression and Activation of the Malignant Phenotype by Extracellular Matrix in Xenograft Models of Bladder Cancer: A Model for Tumor Cell “Dormancy”
Cited by: 15
Author(s): Robert E. Hurst, Paul Hauser, Kimberly D. Kyker, Jonathan E. Heinlen, Jason P. Hodde, Michael C. Hiles, Stanley D. Kosanke, Mikhail G. Dozmorov, Michael A. Ihnat
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2105-15-77

Predicting HIV-1 broadly neutralizing antibody epitope networks using neutralization titers and a novel computational method
Cited by: 11
Author(s): Mark C. Evans, Pham Phung, Agnès Paquet, Anvi Parikh, Christos J. Petropoulos, Terri Wrin, Mojgan Haddad
Software Mentions: 2
Published: over 12 years ago

10.3389/fphar.2020.00932

1H NMR-Based Metabolomics Coupled With Molecular Docking Reveal the Anti-Diabetic Effects and Potential Active Components of Berberis vernae on Type 2 Diabetic Rats
Cited by: 22
Author(s): Qi Li, Chengcheng Zhao, Yunsen Zhang, Huan Du, Tong Xu, Xinmei Xu, Jing Zhang, Tingting Kuang, Xiulan Lai, Gang Fan
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2021.636591

Molecular Classification Based on Prognostic and Cell Cycle-Associated Genes in Patients With Colon Cancer
Cited by: 7
Author(s): Zhiyuan Zhang, Meiling Ji, Jie Li, Qi Wu, Yuesheng Huang, Guodong He, Jiacheng Xu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12935-020-01361-1

Identification of four hub genes as promising biomarkers to evaluate the prognosis of ovarian cancer in silico
Cited by: 16
Author(s): Jingxuan Chen, Yun Cai, Rui Xu, Jiadong Pan, Jie Zhou, Jie Mei
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2020.584683

Multiple Myeloma Cells Alter Adipogenesis, Increase Senescence-Related and Inflammatory Gene Transcript Expression, and Alter Metabolism in Preadipocytes
Cited by: 19
Author(s): Heather Fairfield, Samantha Costa, Carolyne Falank, Mariah Farrell, Connor Murphy, Anastasia D’Amico, Heather Driscoll, Michaela R. Reagan
Software Mentions: 2
Published: over 5 years ago

Projects: pypi: analysis

Science Score: 90/100

Bonuses:

Penalties:

Papers Mentioning analysis 2,036