10.3390/foods8100461

Liking Product Landscape: Going Deeper into Understanding Consumers’ Hedonic Evaluations
Cited by: 4
Author(s): Claudia N. Sánchez, Julieta Domínguez-Soberanes, Héctor B. Escalona‐Buendía, Mario Graff, Sebastián Gutiérrez, Gabriela Sánchez
Software Mentions: 3
Published: almost 7 years ago

10.3390/md18090468

Optimization of Extraction of Bioactive Peptides from Monkfish (Lophius litulon) and Characterization of Their Role in H2O2-Induced Lesion
Cited by: 14
Author(s): Xiaoxiao Tian, Jiawen Zheng, Baogui Xu, Jiena Ye, Zuisu Yang, Yuan Fang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fcvm.2021.713983

Pan-Cancer Analysis of Atrial-Fibrillation-Related Innate Immunity Gene ANXA4
Cited by: 6
Author(s): Tao Yan, Shijie Zhu, Yu Shi, Changming Xie, Miao Zhu, Yangyang Zhang, Chunsheng Wang, Changfa Guo
Software Mentions: 3
Published: almost 5 years ago

10.1093/emph/eoaa003

Spondylolysis and spinal adaptations for bipedalism
Cited by: 8
Author(s): Kimberly A. Plomp, Keith Dobney, Mark Collard
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-07029-7

Intracoronary Imaging, Cholesterol Efflux, and Transcriptomics after Intensive Statin Treatment in Diabetes
Cited by: 12
Author(s): Surbhi Chamaria, Kipp W. Johnson, Yuliya Vengrenyuk, Usman Baber, Khader Shameer, Aparna A. Divaraniya, Benjamin S. Glicksberg, Li Li, Samit Bhatheja, Pedro R. Moreno, Akiko Maehara, Roxana Mehran, Joel T. Dudley, Jagat Narula, Samin K. Sharma, Annapoorna Kini
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-07049-3

Shift of EMT gradient in 3D spheroid MSCs for activation of mesenchymal niche function
Cited by: 22
Author(s): Sohee Jeon, Ho-Sun Lee, Ga‐Young Lee, Gyeongsin Park, Tae-Min Kim, Jihye Shin, Cheolju Lee, Il‐Hoan Oh
Software Mentions: 2
Published: about 9 years ago

10.1186/s12918-017-0456-7

NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis
Cited by: 1
Author(s): Duanchen Sun, Yinliang Liu, Yu Xia, Lingyun Wu
Software Mentions: 2
Published: almost 9 years ago

10.3390/molecules190914723

Challenges and Opportunities of MicroRNAs in Lymphomas
Cited by: 25
Author(s): Giacoma De Tullio, Valentina Fazio, Nicola Sgherza, Carla Minoia, Simona Serratì, Francesca Merchionne, Giacomo Loseto, Angela Iacobazzi, Antonello Rana, P. Petrillo, Nicola Silvestris, Pasquale Iacopino, Attilio Giacosa
Software Mentions: 2
Published: almost 12 years ago

10.1038/s41598-017-05044-2

Characterization of transcriptional modules related to fibrosing-NAFLD progression
Cited by: 43
Author(s): Yi Liu, Guoyan Tian, Yu Song, Yinlan Liu, Yidan Chen, Junping Shi, Jin Yang
Software Mentions: 2
Published: about 9 years ago

10.7717/peerj.4210

Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak
Cited by: 58
Author(s): Jason C Kwong, Courtney R Lane, Finn Romanes, Anders Gonçalves da Silva, Marion Easton, Katie Cronin, Mary Jo Waters, Takehiro Tomita, Kerrie Stevens, Mark B. Schultz, Sarah L. Baines, Norelle L Sherry, Glen P. Carter, Andre Mu, Michelle Sait, Susan A Ballard, Torsten Seemann, Timothy P. Stinear, Benjamin P Howden
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.6472

Metacommunity patterns of Amazonian Odonata: the role of environmental gradients and major rivers
Cited by: 14
Author(s): Fernanda Alves‐Martins, Leandro Schlemmer Brasil, Leandro Juen, Paulo de Marco Júnior, Juliana Stropp, Joaquín Hortal
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms20174267

Ceritinib-Induced Regression of an Insulin-Like Growth Factor-Driven Neuroepithelial Brain Tumor
Cited by: 10
Author(s): Alexandra Russo, Claudia Paret, Francesca Alt, Jürgen Burhenne, Margaux Fresnais, Wolfgang Wagner, Martin Gläser, Hannah Bender, Sabrina Huprich, Patrick N. Harter, Katharina Filipski, Nadine Lehmann, Nora Backes, Lea Roth, Larissa Seidmann, Clemens Sommer, Marc A. Brockmann, Torsten Pietsch, Marie A. Neu, Arthur Wingerter, Jörg Faber
Software Mentions: 2
Published: almost 7 years ago

10.3389/fonc.2019.00310

Overexpression of ASPM, CDC20, and TTK Confer a Poorer Prognosis in Breast Cancer Identified by Gene Co-expression Network Analysis
Cited by: 50
Author(s): Jianing Tang, Mengxin Lü, Qiuxia Cui, Dan Zhang, Deguang Kong, Xing Liao, Jiangbo Ren, Yan Gong
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms20246252

The Major Factors Causing the Microspore Abortion of Genic Male Sterile Mutant NWMS1 in Wheat (Triticum aestivum L.)
Cited by: 17
Author(s): Junchang Li, Jing Zhang, Huijuan Li, Hao Niu, Qiaoqiao Xu, Zhixin Jiao, Junhang An, Yumei Jiang, Qiaoyun Li, Jishan Niu
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2020.575657

Translating Preclinical Research for Exercise Oncology: Take It to the VO2max
Cited by: 3
Author(s): Donald M. Lamkin, Theodore Garland
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2019.01325

Novel Breast-Specific Long Non-coding RNA LINC00993 Acts as a Tumor Suppressor in Triple-Negative Breast Cancer
Cited by: 25
Author(s): Shipeng Guo, Jiang Lei, Kai Tao, Chen Chen, Haochen Yu, Shengchun Liu
Software Mentions: 2
Published: over 6 years ago

10.3390/pharmaceutics11060264

Scale-Up Strategy in Quality by Design Approach for Pharmaceutical Blending Process with Discrete Element Method Simulation
Cited by: 12
Author(s): Su Bin Yeom, Du Hyung Choi
Software Mentions: 2
Published: about 7 years ago

10.3390/pharmaceutics13040545

Drug Repurposing for COVID-19 Treatment by Integrating Network Pharmacology and Transcriptomics
Cited by: 15
Author(s): Danyang Liu, Jiachen Liu, Shuang Liang, Xiang-He Meng, Jonathan Greenbaum, Hong‐Mei Xiao, Lijun Tan, Hong‐Wen Deng
Software Mentions: 2
Published: over 5 years ago

10.3390/pharmaceutics13010080

Control Strategy for Process Development of High-Shear Wet Granulation and Roller Compaction to Prepare a Combination Drug Using Integrated Quality by Design
Cited by: 3
Author(s): Ji Yeon Kim, Myung Hee Chun, Du Hyung Choi
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-01517-6

A Systems Genetics Approach Identified GPD1L and its Molecular Mechanism for Obesity in Human Adipose Tissue
Cited by: 12
Author(s): Hao He, Dianjianyi Sun, Yong Zeng, Ruifeng Wang, Wei Zhu, Shaolong Cao, George A. Bray, Wei Chen, Hui Shen, Frank M. Sacks, Lü Qi, Hong Wen Deng
Software Mentions: 2
Published: over 9 years ago

10.3390/molecules24142564

Integration of Metabolite Profiling and Transcriptome Analysis Reveals Genes Related to Volatile Terpenoid Metabolism in Finger Citron (C. medica var. sarcodactylis)
Cited by: 37
Author(s): Yaying Xu, Changqing Zhu, Changjie Xu, Jun Sun, Donald Grierson, Bo Zhang, Kunsong Chen
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms21113783

Genome-Wide Identification of Epigenetic Regulators in Quercus suber L.
Cited by: 6
Author(s): Helena G. Silva, Rómulo Sacramento Sobral, Alexandre Papadopoulos Magalhães, Leonor Morais-Cecílio, Maria Manuela Ribeiro Costa
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-021-07885-8

Fine dissection of limber pine resistance to Cronartium ribicola using targeted sequencing of the NLR family
Cited by: 6
Author(s): Junjun Liu, Anna W. Schoettle, Richard A. Sniezko, Holly Williams, Arezoo Zamany, Benjamin Rancourt
Software Mentions: 2
Published: about 5 years ago

10.1186/1755-8794-3-44

Molecular signature of response and potential pathways related to resistance to the HSP90 inhibitor, 17AAG, in breast cancer
Cited by: 26
Author(s): Magdalena Zając, Gonzalo Vázquez Gómez, Javier Benı́tez, Beatriz Martı́nez-Delgado
Software Mentions: 2
Published: almost 16 years ago

10.18632/aging.101749

Expression and gene regulation network of RBM8A in hepatocellular carcinoma based on data mining
Cited by: 48
Author(s): Yan Lin, Rong Liang, Yufen Qiu, Yufeng Lv, Jinyan Zhang, Gang Qin, Chunling Yuan, Zhihui Liu, Yongqiang Li, Donghua Zou, Ying Mao
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms21228730

Network Analysis of Gut Microbiome and Metabolome to Discover Microbiota-Linked Biomarkers in Patients Affected by Non-Small Cell Lung Cancer
Cited by: 60
Author(s): Pamela Vernocchi, Tommaso Gili, Federica Conte, Federica Del Chierico, Giorgia Conta, Alfredo Miccheli, Andrea Botticelli, Paola Paci, Guido Caldarelli, Marianna Nuti, Paolo Marchetti, Lorenza Putignani
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules25246003

Structure-Based Discovery and Bioactivity Evaluation of Novel Aurora-A Kinase Inhibitors as Anticancer Agents via Docking-Based Comparative Intermolecular Contacts Analysis (dbCICA)
Cited by: 10
Author(s): Majd S. Hijjawi, Reem Fawaz Abutayeh, Mutasem O. Taha
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.626759

Phylogenetic Revision of the Genus Aliivibrio: Intra- and Inter-Species Variance Among Clusters Suggest a Wider Diversity of Species
Cited by: 6
Author(s): Terje Klemetsen, Christian Karlsen, Nils Peder Willassen
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules24061064

Metabolome and Transcriptome Sequencing Analysis Reveals Anthocyanin Metabolism in Pink Flowers of Anthocyanin-Rich Tea (Camellia sinensis)
Cited by: 49
Author(s): Dylan O’Neill Rothenberg, Haijun Yang, Meiban Chen, Wenting Zhang, Lingyun Zhang
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms22020712

An Integrative Transcriptomic Analysis of Systemic Juvenile Idiopathic Arthritis for Identifying Potential Genetic Markers and Drug Candidates
Cited by: 3
Author(s): Daeun Kim, Jaeseung Song, Sora Lee, Junghyun Jung, Wonhee Jang
Software Mentions: 2
Published: over 5 years ago

10.1111/pce.13078

Complex bud architecture and cell-specific chemical patterns enable supercooling of<i>Picea abies</i>bud primordia
Cited by: 34
Author(s): Edith Kuprian, Caspar Munkler, Anna Resnyak, Sonja Zimmermann, Tan D. Tuong, Notburga Gierlinger, Thomas Müller, David P. Livingston, Gilbert Neuner
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12863-020-00853-3

Sex determination in the GIFT strain of tilapia is controlled by a locus in linkage group 23
Cited by: 25
Author(s): Khanam Taslima, Stefanie Wehner, John B. Taggart, Hugues de Verdal, John A. H. Benzie, Michaël Bekaert, Brendan McAndrew, David J. Penman
Software Mentions: 2
Published: over 6 years ago

10.1007/s11103-021-01121-3

Genome-wide identification and characterization of long non-coding RNAs involved in flag leaf senescence of rice
Cited by: 18
Author(s): Xiaoping Huang, Hongyu Zhang, Qiang Wang, Rong Guo, Liping Wei, Haiyan Song, Weigang Kuang, Jiang-Lin Liao, Yongji Huang, Zhaohai Wang
Software Mentions: 2
Published: over 5 years ago

10.1002/emmm.201302558

Triple negative breast cancer initiating cell subsets differ in functional and molecular characteristics and in γ‐secretase inhibitor drug responses
Cited by: 58
Author(s): Diana J. Azzam, Dekuang Zhao, Junjun Sun, Andy J. Minn, Prathibha Ranganathan, Katherine Drews-Elger, Xiaoqing Han, Manuel Picón-Ruiz, Candace A. Gilbert, Seth A. Wander, Anthony J. Capobianco, Dorraya El-Ashry, Joyce M. Slingerland
Software Mentions: 2
Published: almost 13 years ago

10.3390/plants8100422

Exploration of Floral Volatile Organic Compounds in Six Typical Lycoris taxa by GC-MS
Cited by: 13
Author(s): Tingting Shi, Yuanzheng Yue, Man Shi, Min Chen, Xia Yang, Lianggui Wang
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms22052452

A Systems Biology Approach to Investigating the Interaction between Serotonin Synthesis by Tryptophan Hydroxylase and the Metabolic Homeostasis
Cited by: 11
Author(s): Suhyeon Park, Yumin Kim, Jibeom Lee, Jeong Yun Lee, Hail Kim, Sunjae Lee, Chang‐Myung Oh
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-12-607

Genetic architecture of gene expression in ovine skeletal muscle
Cited by: 17
Author(s): Lisette J. A. Kogelman, Keren Byrne, Tony Vuocolo, Nathan S. Watson-Haigh, Haja N. Kadarmideen, James W. Kijas, V. H. Oddy, G.E. Gardner, Cedric Gondro, Ross L. Tellam
Software Mentions: 2
Published: over 14 years ago

10.3390/ijms22073489

CRISPR-Cas9–Mediated TIM3 Knockout in Human Natural Killer Cells Enhances Growth Inhibitory Effects on Human Glioma Cells
Cited by: 30
Author(s): Takayuki Morimoto, Tsutomu Nakazawa, Ryosuke Matsuda, Fusanori Nishimura, Mitsutoshi Nakamura, Shuichi Yamada, Ichiro Nakagawa, Young-Soo Park, Takahiro Tsujimura, Hiroyuki Nakase
Software Mentions: 2
Published: over 5 years ago

10.1186/s13075-017-1224-1

Blood chemokine profile in untreated early rheumatoid arthritis: CXCL10 as a disease activity marker
Cited by: 53
Author(s): Jayesh M. Pandya, Anna‐Carin Lundell, Kerstin Andersson, Inger Nordström, Elke Theander, Anna Rudin
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2164-14-533

Correlated mRNAs and miRNAs from co-expression and regulatory networks affect porcine muscle and finally meat properties
Cited by: 41
Author(s): Siriluck Ponsuksili, Yang Du, Frieder Hadlich, Puntita Siengdee, Eduard Muráni, Manfred Schwerin, Klaus Wimmers
Software Mentions: 2
Published: about 13 years ago

10.1038/srep37284

Genetic Epidemiology of Glucose-6-Phosphate Dehydrogenase Deficiency in the Arab World
Cited by: 51
Author(s): George Priya Doss C, Dima R. Alasmar, Reem I. Bux, P. Sneha, Fadheela Dad Bakhsh, Iman K. Al-Azwani, Rajaa El Bekay, Hatem Zayed
Software Mentions: 2
Published: over 9 years ago

10.1038/srep34712

Hyperoxaluria leads to dysbiosis and drives selective enrichment of oxalate metabolizing bacterial species in recurrent kidney stone endures
Cited by: 76
Author(s): Mangesh V. Suryavanshi, Shrikant Bhute, Swapnil Jadhav, Meenakshi Bhatia, Rahul P. Gune, Yogesh S. Shouche
Software Mentions: 2
Published: almost 10 years ago

10.3390/molecules23010186

Synthesis, Anti-Proliferative Activity Evaluation and 3D-QSAR Study of Naphthoquinone Derivatives as Potential Anti-Colorectal Cancer Agents
Cited by: 9
Author(s): Julio Acuña, Jhoan Piermattey, Daneiva Caro, Sven Bannwitz, L Barrios, Juan‐Felipe López, Yanet Ocampo, Ricardo Vivas‐Reyes, Fabio Aristizábal, Ricardo Gaitán, Klaus Müller, Luís Franco
Software Mentions: 2
Published: over 8 years ago

10.1186/s12918-014-0137-8

Reconstruction and analysis of a genome-scale metabolic model of the oleaginous fungus Mortierella alpina
Cited by: 64
Author(s): Chao Ye, Nan Xu, Haiqin Chen, Yong Q. Chen, Wei Chen, Li Liu
Software Mentions: 2
Published: over 11 years ago

10.1186/s40478-017-0424-x

A data-driven approach links microglia to pathology and prognosis in amyotrophic lateral sclerosis
Cited by: 54
Author(s): Johnathan Cooper‐Knock, Claire Green, Gabriel Altschuler, Wenbin Wei, Joanna J. Bury, Paul R. Heath, Matthew Wyles, Catherine Gelsthorpe, J. Robin Highley, Alejandro Lorente-Pons, Tim Beck, Kathryn Doyle, Karel Otero, Bryan J. Traynor, Janine Kirby, Pamela J. Shaw, Winston Hide
Software Mentions: 2
Published: over 9 years ago

10.3390/metabo11080484

The Metabolic Signature of In Vitro Produced Bovine Embryos Helps Predict Pregnancy and Birth after Embryo Transfer
Cited by: 4
Author(s): Isabel Gimeno, Pablo García‐Manrique, S. Carrocera, Cristina López-Hidalgo, Luís Valledor, David Martín-González, E. Gómez
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2164-14-102

Biclustering reveals breast cancer tumour subgroups with common clinical features and improves prediction of disease recurrence
Cited by: 26
Author(s): Yi Kan Wang, Cristin G. Print, Edmund J. Crampin
Software Mentions: 2
Published: over 13 years ago

10.1002/embr.201337642

Extensive regulation of the non‐coding transcriptome by hypoxia: role of <scp>HIF</scp> in releasing paused <scp>RNA</scp> pol2
Cited by: 138
Author(s): Hani Choudhry, Johannes Schödel, Spyros Oikonomopoulos, Carme Camps, Steffen Grampp, Adrian L. Harris, Peter J. Ratcliffe, Jiannis Ragoussis, David R. Mole
Software Mentions: 2
Published: over 12 years ago

10.3390/plants9080977

Differences in Alternative Splicing between Yellow and Black-Seeded Rapeseed
Cited by: 9
Author(s): Lin Ai, Jinqi Ma, Fei Xu, Wen Xu, Huanhuan Jiang, Haoran Zhang, Cunmin Qu, Lijuan Wei, Jiana Li
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms22189957

Genome-Wide Identification and Analyses of Drought/Salt-Responsive Cytochrome P450 Genes in Medicago truncatula
Cited by: 8
Author(s): Xia Yin, Yang Jiao, Lin Ma, Yan Su, Yongzhen Pang
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12876-018-0927-3

Helicobacter pylori infections in Ethiopia; prevalence and associated factors: a systematic review and meta-analysis
Cited by: 30
Author(s): Addisu Melese, Chalachew Genet, Balew Zeleke, Tesfaye Andualem
Software Mentions: 2
Published: over 7 years ago

10.1002/ece3.5381

Drift versus selection as drivers of phenotypic divergence at small spatial scales: The case of Belgjarskógur threespine stickleback
Cited by: 10
Author(s): Mathew Seymour, Katja Räsänen, Bjarni K. Kristjánsson
Software Mentions: 2
Published: about 7 years ago

10.1038/srep24350

Differential neural mechanisms for early and late prediction error detection
Cited by: 12
Author(s): Rahim Malekshahi, Anil K. Seth, Amalia Papanikolaou, Zenon Mathews, Niels Birbaumer, Paul F. M. J. Verschure, Andrea Caria
Software Mentions: 2
Published: over 10 years ago

10.1002/ece3.7107

The influence of nutrient enrichment on riverine food web function and stability
Cited by: 10
Author(s): Adam D. Canning, Russell G. Death
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules23071527

Investigations of Structural Requirements for BRD4 Inhibitors through Ligand- and Structure-Based 3D QSAR Approaches
Cited by: 11
Author(s): Adeena Tahir, Rima D. Alharthy, Saadia Naseem, Natasha Mahmood, Mahmood Ahmed, Khuram Shahzad, Muhammad Usman Akhtar, Abdul Hameed, Irfan Sadiq, Haq Nawaz, Muhammad Muddassar
Software Mentions: 2
Published: about 8 years ago

10.1186/s12920-015-0078-0

Integrative network analysis reveals different pathophysiological mechanisms of insulin resistance among Caucasians and African Americans
Cited by: 15
Author(s): Swapan K. Das, Neeraj Kumar Sharma, Bin Zhang
Software Mentions: 2
Published: over 11 years ago

10.1002/ece3.2648

Morphological divergence of lake and stream<i>Phoxinus</i>of Northern Italy and the Danube basin based on geometric morphometric analysis
Cited by: 24
Author(s): David Ramler, Anja Palandačić, Giovanni B. Delmastro, Josef Wanzenböck, Harald Ahnelt
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pbio.2002176

Dynamic transcriptome changes during adipose tissue energy expenditure reveal critical roles for long noncoding RNA regulators
Cited by: 67
Author(s): Zhiqiang Bai, Xiaoran Chai, Myeong Jin Yoon, Hye-Jin Kim, Kinyui Alice Lo, Zhichun Zhang, Dan Xu, Diana Teh Chee Siang, Arcinas Camille Esther Walet, Shaohai Xu, Sook-Yoong Chia, Peng Chen, Hongyuan Yang, Sujoy Ghosh, Li Sun
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2021.623739

Probiotics Bacillus licheniformis Improves Intestinal Health of Subclinical Necrotic Enteritis-Challenged Broilers
Cited by: 29
Author(s): Liugang Kan, Fangshen Guo, Yan Liu, Van Hieu Pham, Yuming Guo, Weihong Zhong
Software Mentions: 2
Published: about 5 years ago

10.1038/srep10889

Gene Perturbation Atlas (GPA): a single-gene perturbation repository for characterizing functional mechanisms of coding and non-coding genes
Cited by: 23
Author(s): Yun Xiao, Yuanfeng Gong, Yanling Lv, Yujia Lan, Jing Hu, Feng Li, Jiu Hua Xu, Jing Bai, Yulan Deng, Ling Liu, Guanxiong Zhang, Fulong Yu, Xia Li
Software Mentions: 2
Published: about 11 years ago

10.1126/sciadv.aax0301

Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases
Cited by: 84
Author(s): Lucija Klarić, Yakov A. Tsepilov, Chloe Stanton, Massimo Mangino, Timo Tõnis Sikka, Tõnu Esko, Eugene D Pakhomov, Perttu Salo, Joris Deelen, Stuart J. McGurnaghan, Toma Keser, Frano Vučković, Ivo Ugrina, Jasminka Krištić, Ivan Gudelj, Tamara Štambuk, Rosina Plomp, Maja Pučić‐Baković, Tamara Pavić, Marija Vilaj, Irena Trbojević‐Akmačić, Camilla Drake, Paula Dobrinić, Jelena Mlinarec, Barbara Jelušić, Anne Richmond, Maria Timofeeva, Alexander K. Grishchenko, Julia Dmitrieva, Mairead Lesley Bermingham, Sodbo Sharapov, Susan M. Farrington, Evropi Τheodoratou, Hae‐Won Uh, Marian Beekman, Eline Slagboom, Édouard Louis, Michel Georges, Manfred Wuhrer, Helen M. Colhoun, Malcolm G. Dunlop, Markus Perola, Krista Fischer, Ozren Polašek, Harry Campbell, Igor Rudan, James F. Wilson, Vlatka Zoldoš, Véronique Vitart, Tim D. Spector, Yurii S. Aulchenko, Gordan Lauc, Caroline Hayward
Software Mentions: 2
Published: over 6 years ago

10.1186/s40478-019-0705-7

Transcriptome analysis of normal-appearing white matter reveals cortisol- and disease-associated gene expression profiles in multiple sclerosis
Cited by: 14
Author(s): Jeroen Melief, Marie Orre, Koen Bossers, C.G. van Eden, Karianne Schuurman, Matthew R. J. Mason, Joost Verhaagen, Jörg Hamann, Inge Huitinga
Software Mentions: 2
Published: over 7 years ago

10.1186/1465-9921-14-80

Microarray profiling reveals suppressed interferon stimulated gene program in fibroblasts from scleroderma-associated interstitial lung disease
Cited by: 81
Author(s): Gisela Lindahl, Carmel Stock, Shiwen Xu, Patricio Clark Di Leoni, Piersante Sestini, Sarah Howat, George Bou‐Gharios, Andrew G. Nicholson, Christopher P. Denton, Jan C. Grutters, Toby M. Maher, Adrian Wells, David Abraham, Elisabetta A. Renzoni
Software Mentions: 2
Published: over 13 years ago

10.1186/s12862-016-0733-x

Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment
Cited by: 61
Author(s): Tobias Großkopf, Jessika Consuegra, Joël Gaffé, John C. Willison, Richard E. Lenski, Orkun S. Soyer, Dominique Schneider
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pbio.3000324

DPPA2/4 and SUMO E3 ligase PIAS4 opposingly regulate zygotic transcriptional program
Cited by: 71
Author(s): Yao-Long Yan, Chao Zhang, Jun Hao, Xuelian Wang, Ming Jia, Mi Li, Jie Na, Xinli Hu, Yangming Wang
Software Mentions: 2
Published: about 7 years ago

10.1186/1471-2164-9-105

MADIBA: A web server toolkit for biological interpretation of Plasmodium and plant gene clusters
Cited by: 25
Author(s): Philip Law, Clotilde Claudel‐Renard, Fourie Joubert, Abraham I. Louw, David Kenneth Berger
Software Mentions: 2
Published: over 18 years ago

10.1016/j.isci.2020.101497

Genome of Tetraploid Fish Schizothorax o'connori Provides Insights into Early Re-diploidization and High-Altitude Adaptation
Cited by: 23
Author(s): Shijun Xiao, Zhenbo Mou, Dingding Fan, Zhou He, Ming Zou, Yu Zeng, Chaowei Zhou, Ruibin Yang, Jiaqi Liu, Shilin Zhu, Yajuan Li, Yanchao Liu, Fei Liu, Wanliang Wang, Benhe Zeng, Hong Li, Di Wang, Haiping Li
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2021.619517

Establishment of a Macrophage Phenotypic Switch Related Prognostic Signature in Patients With Pancreatic Cancer
Cited by: 12
Author(s): Muxing Li, Hangyan Wang, Chunhui Yuan, Zhaolai Ma, Bin Jiang, Lei Li, Li Zhang, Dianrong Xiu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-019-5880-1

Epigenome-wide skeletal muscle DNA methylation profiles at the background of distinct metabolic types and ryanodine receptor variation in pigs
Cited by: 23
Author(s): Siriluck Ponsuksili, Nares Trakooljul, Basavaraj Sajjanar, Frieder Hadlich, Eduard Muráni, Klaus Wimmers
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pcbi.1005617

Relating dynamic brain states to dynamic machine states: Human and machine solutions to the speech recognition problem
Cited by: 7
Author(s): Cai Wingfield, Li Su, Xunying Liu, Chao Zhang, Philip C. Woodland, Andrew Thwaites, Elisabeth Fonteneau, William D. Marslen–Wilson
Software Mentions: 2
Published: almost 9 years ago

10.1002/rcm.8571

A complex matrix characterization approach, applied to cigarette smoke, that integrates multiple analytical methods and compound identification strategies for non‐targeted liquid chromatography with high‐resolution mass spectrometry
Cited by: 17
Author(s): Daniel Arndt, Christian J. Wachsmuth, Christoph Buchholz, M.C. Bentley
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.9626

Transcriptomic and proteomic analysis of mouse radiation-induced acute myeloid leukaemia (AML)
Cited by: 6
Author(s): Christophe Badie, Agnieszka Blachowicz, Žarko Barjaktarović, Rosemary Finnon, Arlette Michaux, Hakan Sarioglu, Natalie Brown, Grainne Manning, Mohammed Abderrafi Benotmane, Soile Tapio, Joanna Polańska, Simon Bouffler
Software Mentions: 2
Published: about 10 years ago

10.1186/s13014-019-1433-7

Evaluation and improvement the safety of total marrow irradiation with helical tomotherapy using repeat failure mode and effects analysis
Cited by: 5
Author(s): Jiemin Shen, Xiaoyong Wang, Di Deng, Jian Ping Gong, Kang Tan, Hongli Zhao, Zhirong Bao, Jian‐Kang Xiao, An Liu, Yunfeng Zhou, Hui Liu, Conghua Xie
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2021.668424

Selenite Induces Cell Cycle Arrest and Apoptosis via Reactive Oxygen Species-Dependent Inhibition of the AKT/mTOR Pathway in Thyroid Cancer
Cited by: 8
Author(s): Zhen Cheng, Shuang Yu, Weiman He, Jie Li, Tianyi Xu, Junyu Xue, Peijie Shi, Shuwei Chen, Yanbing Li, Shubin Hong, Haipeng Xiao
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2164-11-194

Evidence of perturbations of cell cycle and DNA repair pathways as a consequence of human and murine NF1-haploinsufficiency
Cited by: 17
Author(s): Alexander Pemov, Caroline Park, Karlyne M. Reilly, Douglas R. Stewart
Software Mentions: 2
Published: over 16 years ago

10.1186/1752-0509-5-110

iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states
Cited by: 83
Author(s): Aarash Bordbar, Neema Jamshidi, Bernhard Ø. Palsson
Software Mentions: 2
Published: about 15 years ago

10.1186/s12864-018-5195-7

Genetic ancestry, admixture and health determinants in Latin America
Cited by: 68
Author(s): Emily T. Norris, Lu Wang, Andrew B. Conley, Lavanya Rishishwar, Leonardo Mariño-Ramírez, Augusto Valderrama-Aguirre, I. King Jordan
Software Mentions: 2
Published: over 7 years ago

10.1002/ece3.6762

Genetic diversity, population structure, and gene flow analysis of lowland bamboo [<i>Oxytenanthera abyssinica</i> (A. Rich.) Munro] in Ethiopia
Cited by: 16
Author(s): Oumer Abdie Oumer, Kifle Dagne, Tileye Feyissa, Kassahun Tesfaye, Jayaraman Durai, Muhammad Zeeshan Hyder
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1009022

Inclusion of maintenance energy improves the intracellular flux predictions of CHO
Cited by: 4
Author(s): Diana Széliová, Jerneja Štor, Isabella Thiel, Marcus Weinguny, Michael Hanscho, Gabriele Lhota, Nicole Borth, Jürgen Zanghellini, David E. Ruckerbauer, Isabel Rocha
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2105-11-176

Gene set enrichment meta-learning analysis: next- generation sequencing versus microarrays
Cited by: 17
Author(s): Gregor Štiglic, Mateja Bajgot, Peter Kokol
Software Mentions: 2
Published: over 16 years ago

10.18632/oncotarget.18978

EB1 protein alteration characterizes sporadic but not ulcerative colitis associated colorectal cancer
Cited by: 6
Author(s): Timo Gemoll, Sophie L. Kollbeck, Karl Karstens, Gia G. Hò, Sonja Hartwig, Sarah Strohkamp, Katharina Schillo, Christoph Thorns, Martina Oberländer, Kathrin Kalies, Stefan Lehr, Jens K. Habermann
Software Mentions: 2
Published: about 9 years ago

10.3390/proteomes7030030

Network Analysis of a Membrane-Enriched Brain Proteome across Stages of Alzheimer’s Disease
Cited by: 16
Author(s): Lenora Higginbotham, Eric B. Dammer, Duc M. Duong, Erica Modeste, Thomas J. Montine, James J. Lah, Aĺlan I. Levey
Software Mentions: 2
Published: almost 7 years ago

10.18632/oncotarget.20537

Identification of candidate genes related to pancreatic cancer based on analysis of gene co-expression and protein-protein interaction network
Cited by: 10
Author(s): Tiejun Zhang, Xiaojuan Wang, Z.Q. Yue
Software Mentions: 2
Published: almost 9 years ago

10.1073/pnas.2025539118

The p53 transcriptional response across tumor types reveals core and senescence-specific signatures modulated by long noncoding RNAs
Cited by: 13
Author(s): Ephrath Tesfaye, Elena Martínez-Terroba, Jordan Bendor, Lauren Winkler, Christiane Olivero, Kevin Chen, David M. Feldser, Jesse R. Zamudio, Nadya Dimitrova
Software Mentions: 2
Published: about 5 years ago

10.1073/pnas.2014529117

<i>Datura</i> quids at Pinwheel Cave, California, provide unambiguous confirmation of the ingestion of hallucinogens at a rock art site
Cited by: 21
Author(s): David Robinson, Kelly Brown, Moira McMenemy, Lynn Dennany, Matthew J. Baker, Pamela Allan, Caroline Cartwright, Julienne Bernard, Fraser Sturt, Elena Kotoula, Christopher S. Jazwa, Kristina M. Gill, Patrick Randolph-Quinney, Thomas Ash, Clare Bedford, Devlin Gandy, Matthew Armstrong, James Miles, David B. Haviland
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.21546

Identification of hub genes related to silicone-induced immune response in rats
Cited by: 5
Author(s): Xiaolu Huang, Yiwen Zhou, Wenhui Liu, Haizhou Li, Xiao Liang, Rui Jin, Hengyu Du, Jianjun He, Bangda Chai, Ran Duan, Qingfeng Li
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.22009

The WAVE3-YB1 interaction regulates cancer stem cells activity in breast cancer
Cited by: 21
Author(s): Kamila Błędzka, Barbara J. Schiemann, William P. Schiemann, Paul L. Fox, Edward F. Plow, Khalid Sossey‐Alaoui
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.22402

NMR-based metabolomic techniques identify potential urinary biomarkers for early colorectal cancer detection
Cited by: 41
Author(s): Zhening Wang, Yan Lin, Jiahao Liang, Yao Huang, Changchun Ma, Xingmu Liu, Ju-Rong Yang
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pcbi.1003375

Detecting Genetic Association of Common Human Facial Morphological Variation Using High Density 3D Image Registration
Cited by: 50
Author(s): Shouneng Peng, Jingze Tan, Sile Hu, Hang Zhou, Jing Guo, Jin Li, Kun Tang
Software Mentions: 2
Published: over 12 years ago

10.18632/oncotarget.23254

Long non-coding RNA <i>GAS5</i> and <i>ZFAS1</i> are prognostic markers involved in translation targeted by <i>miR-940</i> in prostate cancer
Cited by: 30
Author(s): Xin Chen, Chao Yang, Shengli Xie, Edwin Cheung
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pcbi.1000312

Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization
Cited by: 167
Author(s): Ines Thiele, Neema Jamshidi, Ronan M. T. Fleming, Bernhard Ø. Palsson
Software Mentions: 2
Published: over 17 years ago

10.1186/1471-2105-7-81

Transcriptomic response to differentiation induction
Cited by: 1
Author(s): Geoffrey W. Patton, Robert M. Stephens, Igor A. Sidorov, Xiao Xue, Richard A. Lempicki, D.S. Dimitrov, Robert H. Shoemaker, Gabriela Tudor
Software Mentions: 2
Published: over 20 years ago

10.1371/journal.pcbi.1002705

Coupling between Catalytic Loop Motions and Enzyme Global Dynamics
Cited by: 43
Author(s): Zeynep Kurkcuoglu, Ahmet Bakan, Duygu Kocaman, İvet Bahar, Pemra Doruker
Software Mentions: 2
Published: almost 14 years ago

10.18632/oncotarget.24047

Molecular characterization of breast cancer cell response to metabolic drugs
Cited by: 22
Author(s): Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, Jorge M. Arevalillo, Mariana Díaz-Almirón, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Hilario Navarro, Rosa Aras-López, Irene Dapía, Rocío López-Vacas, Paolo Nanni, Sara Llorente-Armijo, Pedro Arias, Alberto M. Borobia, Paloma Maı́n, Jaime Feliú, Enrique Espinosa, Juan Ángel Fresno Vara
Software Mentions: 2
Published: over 8 years ago

10.18632/aging.202255

B3GNT3 overexpression promotes tumor progression and inhibits infiltration of CD8+ T cells in pancreatic cancer
Cited by: 10
Author(s): Hongkai Zhuang, Zixuan Zhou, Zedan Zhang, Xinming Chen, Zuyi Ma, Shanzhou Huang, Yuanfeng Gong, Chuanzhao Zhang, Baohua Hou
Software Mentions: 2
Published: over 5 years ago

10.3892/etm.2013.1392

A study exploring critical pathways in clear cell renal cell carcinoma
Cited by: 12
Author(s): Zisan Zeng, Tengcheng Que, Jiange Zhang, Yanling Hu
Software Mentions: 2
Published: almost 13 years ago

10.1186/s13229-017-0130-3

Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism
Cited by: 44
Author(s): Rui Chen, Lea K. Davis, Stephen J. Guter, Qiang Wei, Suma Jacob, Melissa H. Potter, Nancy J. Cox, Edwin H. Cook, James S. Sutcliffe, Bingshan Li
Software Mentions: 2
Published: over 9 years ago

10.1002/cjp2.191

Overactivation of the <scp>IGF</scp> signalling pathway in osteosarcoma: a potential therapeutic target?
Cited by: 5
Author(s): Baptiste Ameline, Michal Kováč, Michaela Nathrath, Maxim Barenboim, Olaf Witt, Andreas H. Krieg, Daniel Baumhoer
Software Mentions: 2
Published: over 5 years ago

10.3390/jpm10040282

Digital Phenotyping and Patient-Generated Health Data for Outcome Measurement in Surgical Care: A Scoping Review
Cited by: 16
Author(s): Prakash Jayakumar, Eugenia Lin, Vincent P Galea, Abraham J Mathew, Nikhil Panda, Imelda Vetter, Alex B. Haynes
Software Mentions: 2
Published: over 5 years ago

10.1098/rspb.2021.0181

Craniofacial development illuminates the evolution of nightbirds (Strisores)
Cited by: 9
Author(s): Guillermo Navalón, Sergio M. Nebreda, Jen A. Bright, Matteo Fabbri, Roger B. J. Benson, Bhart Anjan S. Bhullar, Jesús Marugán‐Lobón, Emily J. Rayfield
Software Mentions: 2
Published: over 5 years ago