10.12669/pjms.343.14644

Whole Genome Sequencing instead of Whole Exome Sequencing is required to identify the Genetic Causes of Polycystic Ovary Syndrome in Pakistani families
Cited by: 6
Author(s): Muhammad Tariq Masood Khan, Rubina Nazli, Jawad Ahmed, Sulman Basit
Software Mentions: 3
Published: over 8 years ago

10.1093/molbev/msaa002

Disrupted Gene Networks in Subfertile Hybrid House Mice
Cited by: 20
Author(s): Katy Morgan, Bettina Harr, Michael A. White, Bret A. Payseur, Leslie M. Turner
Software Mentions: 3
Published: almost 7 years ago

10.3389/fonc.2019.00812

Identification of a Specific Gene Module for Predicting Prognosis in Glioblastoma Patients
Cited by: 17
Author(s): Xiangjun Tang, Pengfei Xu, Bin Wang, Jie Luo, Rui Fu, Kuan‐Ming Huang, Long‐Jun Dai, Junti Lu, Gang Cao, Hao Peng, Li Zhang, Zhaohui Zhang, Qianxue Chen
Software Mentions: 3
Published: about 7 years ago

10.1186/s12989-019-0309-1

Surface PEGylation suppresses pulmonary effects of CuO in allergen-induced lung inflammation
Cited by: 25
Author(s): Marit Ilves, Pia Anneli Sofia Kinaret, Joseph Ndika, Piia Karisola, Veer Singh Marwah, Vittorio Fortino, Yuri Fedutik, Manuel Correia, Nicky Ehrlich, Katrin Loeschner, Alexandros Besinis, Joanne Vassallo, Richard D. Handy, Henrik Wolff, Kai Savolainen, Dario Greco, Harri Alenius
Software Mentions: 3
Published: over 7 years ago

10.3389/fonc.2021.591893

Screening and Identification of Key Biomarkers of Gastric Cancer: Three Genes Jointly Predict Gastric Cancer
Cited by: 3
Author(s): Mengjie Shan, Ling‐Bing Meng, Peng Guo, Yuanmeng Zhang, Dexian Kong, Ya-Bin Liu
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2020.00394

Gene Expression Profiles Identified Novel Urine Biomarkers for Diagnosis and Prognosis of High-Grade Bladder Urothelial Carcinoma
Cited by: 14
Author(s): Yuxuan Song, Donghui Jin, Ningjing Ou, Zhiwen Luo, Peng Huang, Jingyi Chen, Yongjiao Yang, Xiaoqiang Liu
Software Mentions: 3
Published: over 6 years ago

10.3390/microorganisms8101579

The Core and Distinction of the Gut Microbiota in Chinese Populations across Geography and Ethnicity
Cited by: 16
Author(s): Dong‐Tsamn Lin, Ran Wang, Junjie Luo, Fazheng Ren, Zhenglong Gu, Yiqiang Zhao, Liang Zhao
Software Mentions: 3
Published: about 6 years ago

10.1186/s12885-021-08687-7

A novel survival model based on a Ferroptosis-related gene signature for predicting overall survival in bladder cancer
Cited by: 22
Author(s): Yingchun Liang, Fangdie Ye, Chenyang Xu, Lina Zou, Yun Hu, Jimeng Hu, Haowen Jiang
Software Mentions: 3
Published: about 5 years ago

10.1099/mgen.0.000184

SuperDCA for genome-wide epistasis analysis
Cited by: 21
Author(s): Santeri Puranen, Maiju Pesonen, Johan Pensar, Ying Xu, John A. Lees, Stephen D. Bentley, Nicholas J. Croucher, Jukka Corander
Software Mentions: 3
Published: over 8 years ago

10.1186/s12934-021-01509-2

Engineering Escherichia coli for the utilization of ethylene glycol
Cited by: 11
Author(s): Aditya Vikram Pandit, Emma Harrison, Radhakrishnan Mahadevan
Software Mentions: 3
Published: over 5 years ago

10.3389/fninf.2014.00029

A review of multivariate analyses in imaging genetics
Cited by: 91
Author(s): Jingyu Liu, Vince D. Calhoun
Software Mentions: 3
Published: over 12 years ago

10.3389/fmolb.2021.640387

Lipidomic Perturbations in Cynomolgus Monkeys are Regulated by Thyroid Stimulating Hormone
Cited by: 2
Author(s): Tao Xu, Yi-Yan Yang, Xing Huang, Jianhong Ren, Ting Xu, Wei Xie
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.11319

Identification of P2RY13 as an immune-related prognostic biomarker in lung adenocarcinoma: A public database-based retrospective study
Cited by: 6
Author(s): Jiang Lin, Chunlei Wu, Dehua Mao, Quanteng Hu
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.676251

Dynamics of Soil Bacterial and Fungal Communities During the Secondary Succession Following Swidden Agriculture IN Lowland Forests
Cited by: 6
Author(s): Qiang Lin, Petr Baldrián, Lingjuan Li, Vojtěch Novotný, Petr Heděnec, Jaroslav Kukla, Ruma Umari, Lenka Mészárošová, Jan Frouz
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-017-3237-1

Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue
Cited by: 26
Author(s): Bojana Jovanović, Quanhu Sheng, Robert S. Seitz, Kasey Lawrence, Stephan W. Morris, Lance R. Thomas, David R. Hout, Brock L. Schweitzer, Yan Guo, Jennifer A. Pietenpol, Brian D. Lehmann
Software Mentions: 3
Published: over 9 years ago

10.3389/fcvm.2021.713983

Pan-Cancer Analysis of Atrial-Fibrillation-Related Innate Immunity Gene ANXA4
Cited by: 6
Author(s): Tao Yan, Shijie Zhu, Yu Shi, Changming Xie, Miao Zhu, Yangyang Zhang, Chunsheng Wang, Changfa Guo
Software Mentions: 3
Published: about 5 years ago

10.3390/metabo10080303

Metabolic Modelling as a Framework for Metabolomics Data Integration and Analysis
Cited by: 42
Author(s): Svetlana Volkova, Marta R. A. Matos, Matthias Mattanovich, Igor Marín de Mas
Software Mentions: 3
Published: about 6 years ago

10.7150/jca.51591

Increased Expression of <i>KNSTRN</i> in Lung Adenocarcinoma Predicts Poor Prognosis: A Bioinformatics Analysis Based on TCGA Data
Cited by: 11
Author(s): Pengbo Deng, Rongrong Zhou, Jinghui Zhang, Liming Cao
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12915-020-00943-9

The hard clam genome reveals massive expansion and diversification of inhibitors of apoptosis in Bivalvia
Cited by: 45
Author(s): Hao Song, Ximing Guo, Lina Sun, Qianghui Wang, Fengming Han, Haiyan Wang, Gregory A. Wray, Phillip L. Davidson, Qing Wang, Zhi Hu, Cong Zhou, Zhi Yu, Mei‐Jie Yang, Jie Feng, Shi Pu, Yi Zhou, Libin Zhang, Tao Zhang
Software Mentions: 3
Published: over 5 years ago

10.3390/foods8100461

Liking Product Landscape: Going Deeper into Understanding Consumers’ Hedonic Evaluations
Cited by: 4
Author(s): Claudia N. Sánchez, Julieta Domínguez-Soberanes, Héctor B. Escalona‐Buendía, Mario Graff, Sebastián Gutiérrez, Gabriela Sánchez
Software Mentions: 3
Published: about 7 years ago

10.1155/2021/3524571

RNA-Seq Expression Analysis of Chronic Asthmatic Mice with Bu-Shen-Yi-Qi Formula Treatment and Prediction of Regulated Gene Targets of Anti-Airway Remodeling
Cited by: 3
Author(s): Jie Cui, Zexi Lv, Fangzhou Teng, Yi Liu, Weifeng Tang, WenQian Wang, Tulake Wuniqiemu, Jingjing Qin, Xueyi Zhu, Ying Wei, Jingcheng Dong
Software Mentions: 3
Published: over 5 years ago

10.3390/metabo5040794

Flux Balance Analysis Inspired Bioprocess Upgrading for Lycopene Production by a Metabolically Engineered Strain of Yarrowia lipolytica
Cited by: 28
Author(s): Komi Nambou, Xingxing Jian, Xinkai Zhang, Liujing Wei, Jiajia Lou, Catherine Madzak, Qiang Hua
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12967-021-02845-y

Identification of an immune classification for cervical cancer and integrative analysis of multiomics data
Cited by: 7
Author(s): Xintong Lyu, Guang Li, Qiao Qiao
Software Mentions: 3
Published: over 5 years ago

10.1186/s12967-020-02691-4

Model based on five tumour immune microenvironment-related genes for predicting hepatocellular carcinoma immunotherapy outcomes
Cited by: 24
Author(s): Xinyu Gu, Jun Guan, Jia Xu, Qiuxian Zheng, Chao Chen, Qin Yang, ChunHong Huang, Wang Gang, Haibo Zhou, Zhi Chen, Haihong Zhu
Software Mentions: 3
Published: almost 6 years ago

10.1111/evo.12476

THE CHANGING PACE OF INSULAR LIFE: 5000 YEARS OF MICROEVOLUTION IN THE ORKNEY VOLE<i>(MICROTUS ARVALIS ORCADENSIS)</i>
Cited by: 50
Author(s): Thomas Cucchi, Ross Barnett, Natalia Martínková, Sabrina Renaud, Élodie Renvoisé, Allowen Evin, Alison Sheridan, Ingrid Mainland, Caroline Wickham-Jones, Christelle Tougard, Jean‐Pierre Quéré, Michel Pascal, M. Pascal, Gerald Heckel, Paul O’Higgins, Jeremy B. Searle, Keith Dobney
Software Mentions: 3
Published: about 12 years ago

10.1186/s12967-020-02611-6

Putative positive role of inflammatory genes in fat deposition supported by altered gene expression in purified human adipocytes and preadipocytes from lean and obese adipose tissues
Cited by: 5
Author(s): Sang-Hyeop Lee, Nak-Hyeon Choi, In-Uk Koh, Bong-Jo Kim, Song Lee, Song Cheol Kim, Sun Shim Choi
Software Mentions: 3
Published: almost 6 years ago

10.1155/2019/8265958

Competing Endogenous RNA and Coexpression Network Analysis for Identification of Potential Biomarkers and Therapeutics in association with Metastasis Risk and Progression of Prostate Cancer
Cited by: 9
Author(s): Xu Pang, Ying Zhao, Jinhua Wang, Wan Li, Qian Xiang, Zhuo Zhang, Shi-Liang Wu, Ailin Liu, Guanhua Du, Yimin Chen
Software Mentions: 3
Published: about 7 years ago

10.18632/oncotarget.17011

Association between PSCA gene polymorphisms and the risk of cancer: an updated meta-analysis and trial sequential analysis
Cited by: 6
Author(s): Zhiqiang Qin, Jingyuan Tang, Xiao Li, Yu Yan, Chuanjie Zhang, Peng Han, Ran Li, Xin Jiang, Chengying Yang, Wei Wang, Min Tang, Wei Zhang
Software Mentions: 3
Published: over 9 years ago

10.1016/j.isci.2021.102686

PRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα
Cited by: 14
Author(s): Evelyn Ramberger, Valeria Sapozhnikova, Elisabeth Kowenz‐Leutz, Karin Zimmermann, Nathalie Nicot, Petr V. Nazarov, Daniel Pérez-Hernández, Ulf Reimer, Philipp Mertins, Gunnar Dittmar, Achim Leutz
Software Mentions: 3
Published: over 5 years ago

10.1186/s13018-021-02329-1

Machine learning analysis of gene expression profile reveals a novel diagnostic signature for osteoporosis
Cited by: 5
Author(s): Xinlei Chen, Guangping Liu, Shuxiang Wang, Haiyang Zhang, Peng Xue
Software Mentions: 3
Published: over 5 years ago

10.1210/endocr/bqaa009

Protein Profile Changes in Circulating Placental Extracellular Vesicles in Term and Preterm Births: A Longitudinal Study
Cited by: 29
Author(s): Ramkumar Menon, Chirantan Debnath, Andrew Lai, Dominic Guanzon, Shinjini Bhatnagar, Pallavi Kshetrapal, Samantha Sheller‐Miller, Carlos Salomón
Software Mentions: 3
Published: over 6 years ago

10.1186/s12974-020-01898-y

Meta-analysis of mouse transcriptomic studies supports a context-dependent astrocyte reaction in acute CNS injury versus neurodegeneration
Cited by: 54
Author(s): Sudeshna Das, Zhaozhi Li, Ayush Noori, Bradley T. Hyman, Alberto Serrano-Pozo
Software Mentions: 3
Published: about 6 years ago

10.1186/s40164-020-00164-4

Frequent upregulation of G9a promotes RelB-dependent proliferation and survival in multiple myeloma
Cited by: 8
Author(s): Xi Yun Zhang, Deepa Rajagopalan, Tae-Hoon Chung, Lissa Hooi, Tan Boon Toh, Johann Shane Tian, Masturah Bte Mohd Abdul Rashid, Noor Rashidha Bte Meera Sahib, Meijia Gu, Jackwee Lim, Wilson Wang, Wee Joo Chng, Sudhakar Jha, Edward Kai‐Hua Chow
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms22169081

Modeling and Structure Determination of Homo-Oligomeric Proteins: An Overview of Challenges and Current Approaches
Cited by: 10
Author(s): Aljaž Gaber, Miha Pavšič
Software Mentions: 3
Published: about 5 years ago

10.1002/ece3.4504

Methylation divergence of invasive<i>Ciona</i>ascidians: Significant population structure and local environmental influence
Cited by: 17
Author(s): Ping Ni, Shiguo Li, Ya‐Ping Lin, Wei Xiong, Xuena Huang, Aibin Zhan
Software Mentions: 3
Published: about 8 years ago

10.3390/ijms221810117

LncRNA-CR11538 Decoys Dif/Dorsal to Reduce Antimicrobial Peptide Products for Restoring Drosophila Toll Immunity Homeostasis
Cited by: 9
Author(s): Hongjian Zhou, Shengjie Li, Shanshan Wu, Jin Park, Fei Ma
Software Mentions: 3
Published: about 5 years ago

10.3390/md18090468

Optimization of Extraction of Bioactive Peptides from Monkfish (Lophius litulon) and Characterization of Their Role in H2O2-Induced Lesion
Cited by: 14
Author(s): Xiaoxiao Tian, Jiawen Zheng, Baogui Xu, Jiena Ye, Zuisu Yang, Yuan Fang
Software Mentions: 3
Published: about 6 years ago

10.15252/emmm.201708304

A <scp>HIF</scp> – <scp>LIMD</scp> 1 negative feedback mechanism mitigates the pro‐tumorigenic effects of hypoxia
Cited by: 17
Author(s): Daniel E. Foxler, Katherine S. Bridge, John G. Foster, Paul Grevitt, Sean Curry, Kunal M. Shah, Kathryn M. Davidson, A. Nagano, Emanuela Gadaleta, Hefin Rhys, Paul Kennedy, Miguel A. Hermida, Ting‐Yu Chang, Peter E. Shaw, Louise E. Reynolds, Tristan R. McKay, Hsei Wei Wang, Paulo S. Ribeiro, Michael J. Plevin, Dimitrios Lagos, Nick R. Lemoine, Prabhakar Rajan, Trevor A. Graham, Claude Chelala, Kairbaan Hodivala‐Dilke, Ian Spendlove, Tyson V. Sharp
Software Mentions: 3
Published: over 8 years ago

10.1186/s12920-020-00767-0

Unraveling the molecular heterogeneity in type 2 diabetes: a potential subtype discovery followed by metabolic modeling
Cited by: 7
Author(s): Maryam Khoshnejat, Kaveh Kavousi, Ali Mohammad Banaei-Moghaddam, Ali Akbar Moosavi-Movahedi
Software Mentions: 3
Published: about 6 years ago

10.3390/ijms22031167

Glutamine Uptake via SNAT6 and Caveolin Regulates Glutamine–Glutamate Cycle
Cited by: 14
Author(s): Nikhil R. Gandasi, Vasiliki Arapi, Michel‐Edwar Mickael, Prajakta A. Belekar, Louise Granlund, Lakshmi Kothegala, Robert Fredriksson, Sonchita Bagchi
Software Mentions: 3
Published: over 5 years ago

10.1186/s12920-015-0141-x

Extensive alterations of the whole-blood transcriptome are associated with body mass index: results of an mRNA profiling study involving two large population-based cohorts
Cited by: 21
Author(s): Georg Homuth, Simone Wahl, Christian Müller, Claudia Schurmann, Ulrike Mäder, Stefan Blankenberg, Maren Carstensen, Marcus Dörr, Karlhans Endlich, Christian Englbrecht, Stephan B. Felix, Christian Gieger, Harald Grallert, Christian Herder, Thomas Illig, Jochen Kruppa, Carola Marzi, Julia Mayerle, Thomas Meitinger, Andres Metspalu, Matthias Nauck, Annette Peters, Wolfgang Rathmann, Eva Reinmaa, Rainer Rettig, Michael Roden, Arne Schillert, Katharina Schramm, Leif Steil, Konstantin Strauch, Alexander Teumer, Henry Völzke, Henri Wallaschofski, Philipp S. Wild, Andreas Ziegler, Uwe Völker, Holger Prokisch, Tanja Zeller
Software Mentions: 3
Published: about 11 years ago

10.1186/s12944-018-0767-8

Associations between three common single nucleotide polymorphisms (rs266729, rs2241766, and rs1501299) of ADIPOQ and cardiovascular disease: a meta-analysis
Cited by: 13
Author(s): Joseph Sam Kanu, Shuang Qiu, Cheng Yi, Ri Li, Changgui Kou, Yan Gu, Yang Bai, Jingwei Shi, Yong Li, Yunkai Liu, Yaqin Yu, Yawen Liu
Software Mentions: 3
Published: over 8 years ago

10.2196/jmir.5391

Toward a Mixed-Methods Research Approach to Content Analysis in The Digital Age: The Combined Content-Analysis Model and its Applications to Health Care Twitter Feeds
Cited by: 56
Author(s): Eradah O Hamad, Marie Y. Savundranayagam, Jeffrey D. Holmes, Elizabeth Anne Kinsella, Andrew M. Johnson
Software Mentions: 3
Published: over 10 years ago

10.1186/s13000-014-0210-z

Unveiling transcription factor regulation and differential co-expression genes in Duchenne muscular dystrophy
Cited by: 7
Author(s): Lijun Tian, Junhua Cao, Xingqiang Deng, Chuanling Zhang, Tong Qian, Xianxiang Song, Baoshan Huang
Software Mentions: 3
Published: almost 12 years ago

10.3390/ijms151120833

Genome-Wide Transcriptome Profiles of Rice Hybrids and Their Parents
Cited by: 11
Author(s): E Zhiguo, Shanshan Huang, Yuping Zhang, Ge Liu, Lei Wang
Software Mentions: 3
Published: almost 12 years ago

10.3390/ijms20071587

Transcriptomic Sequencing and Co-Expression Network Analysis on Key Genes and Pathways Regulating Nitrogen Use Efficiency in Myriophyllum aquaticum
Cited by: 9
Author(s): Rui Wang, Shengjun Xu, Cancan Jiang, Hanjun Sun, Shugeng Feng, Sining Zhou, Guoqiang Zhuang, Zhihui Bai
Software Mentions: 3
Published: over 7 years ago

10.1093/database/baw099

SorghumFDB: sorghum functional genomics database with multidimensional network analysis
Cited by: 40
Author(s): Tian Tian, Qi You, Liwei Zhang, Xin Yi, Hengyu Yan, Wenying Xu, Zhen Su
Software Mentions: 3
Published: almost 11 years ago

10.1186/s40170-021-00272-7

Robust metabolic transcriptional components in 34,494 patient-derived cancer-related samples and cell lines
Cited by: 3
Author(s): Vincent Christiaan Leeuwenburgh, Carlos G. Urzúa-Traslaviña, Arkajyoti Bhattacharya, Marthe T. C. Walvoort, Mathilde Jalving, Steven de Jong, Rudolf S.N. Fehrmann
Software Mentions: 3
Published: about 5 years ago

10.1186/1755-8794-3-59

Birt-Hogg-Dubé renal tumors are genetically distinct from other renal neoplasias and are associated with up-regulation of mitochondrial gene expression
Cited by: 71
Author(s): Jeff Klomp, David Petillo, Natalie M. Niemi, Karl Dykema, Jindong Chen, Ximing J. Yang, Annika Sääf, Peter Zickert, Markus Aly, Ulf S.R. Bergerheim, Magnus Nordenskjöld, Sophie Gad, Sophie Giraud, Yves Denoux, Laurent Yonneau, A. Méjean, Viorel Vasiliu, Stéphane Richard, Jeffrey P. MacKeigan, Bin Tean Teh, Kyle A. Furge
Software Mentions: 3
Published: almost 16 years ago

10.3390/ijms20236033

TCGA-TCIA Impact on Radiogenomics Cancer Research: A Systematic Review
Cited by: 33
Author(s): Mario Zanfardino, Katia Pane, Peppino Mirabelli, Marco Salvatore, Monica Franzese
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12881-017-0393-8

Exome sequencing identified rare variants in genes HSPG2 and ATP2B4 in a family segregating developmental dysplasia of the hip
Cited by: 30
Author(s): Sulman Basit, Alia M. Albalawi, Essa Alharby, Khalid I. Khoshhal
Software Mentions: 3
Published: over 9 years ago

10.1016/j.dib.2017.10.014

Waste management CDM projects barriers NVivo 10® qualitative dataset
Cited by: 5
Author(s): André Luiz Bufoni, Aracéli Cristina de Sousa Ferreira, Luciano Basto Oliveira
Software Mentions: 3
Published: almost 9 years ago

10.1186/1471-2105-14-212

Linear combination test for gene set analysis of a continuous phenotype
Cited by: 8
Author(s): Irina Dinu, Xiaoming Wang, Linda E. Kelemen, Shabnam Vatanpour, Saumyadipta Pyne
Software Mentions: 3
Published: over 13 years ago

10.7554/eLife.36330

TFAP2 transcription factors are regulators of lipid droplet biogenesis
Cited by: 31
Author(s): Cameron C. Scott, Stefania Vossio, Jacques Rougemont, Jean Grüenberg
Software Mentions: 3
Published: about 8 years ago

10.1155/2021/9971353

P3H4 Overexpression Serves as a Prognostic Factor in Lung Adenocarcinoma
Cited by: 5
Author(s): Xiangfeng Jin, Haiqing Zhou, Jianfang Song, Hong Cui, Yiren Luo, Haiping Jiang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12916-015-0282-y

Multi-omic signature of body weight change: results from a population-based cohort study
Cited by: 58
Author(s): Simone Wahl, Susanne Vogt, Ferdinand Stückler, Jan Krumsiek, Jörg Bartel, Tim Kacprowski, Katharina Schramm, Maren Carstensen, Wolfgang Rathmann, Michael Roden, Carolin Jourdan, Antti J. Kangas, Pasi Soininen, Mika Ala‐Korpela, Ute Nöthlings, Heiner Boeing, Fabian J. Theis, Christa Meisinger, Mélanie Waldenberger, Karsten Suhre, Georg Homuth, Christian Gieger, Gabi Kastenmüller, Thomas Illig, Jakob Linseisen, Annette Peters, Holger Prokisch, Christian Herder, Barbara Thorand, Harald Grallert
Software Mentions: 3
Published: over 11 years ago

10.7554/eLife.33070

Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice
Cited by: 67
Author(s): Roman M. Stilling, Gerard M. Moloney, Feargal J. Ryan, Alan E. Hoban, Thomaz F.S. Bastiaanssen, Fergus Shanahan, Gerard Clarke, Marcus J. Claesson, Timothy G. Dinan, John F. Cryan
Software Mentions: 3
Published: over 8 years ago

10.1186/s12920-020-0693-2

Potential role of genomic imprinted genes and brain developmental related genes in autism
Cited by: 8
Author(s): Jian Li, Xue Lü, Mingya Wang, Yunyun Hu, Kaiyu Xue, Shuanglin Gu, Lili Lv, Saijun Huang, Wei Xie
Software Mentions: 3
Published: over 6 years ago

10.1016/j.dib.2021.106730

Gaze tracking dataset for comparison of smooth and saccadic eye tracking
Cited by: 2
Author(s): Adam Pantanowitz, Kimoon Kim, Chelsey Chewins, David M. Rubin
Software Mentions: 3
Published: over 5 years ago

10.1016/j.csbj.2020.04.011

Multi-omics systems toxicology study of mouse lung assessing the effects of aerosols from two heat-not-burn tobacco products and cigarette smoke
Cited by: 21
Author(s): Bjoern Titz, Justyna Szostak, Alain Sewer, Blaine Phillips, Catherine Nury, Thomas Schneider, Sophie Dijon, Oksana Lavrynenko, Ashraf Elamin, Emmanuel Guedj, Ee Tsin Wong, Stefan Lebrun, Grégory Vuillaume, Athanasios Kondylis, Sylvain Gubian, Stéphane Cano, Patrice Leroy, Brian Keppler, Nikolai V. Ivanov, Patrick Vanscheeuwijck, Florian Martin, Manuel C. Peitsch, Julia Hoeng
Software Mentions: 3
Published: almost 7 years ago

10.1016/j.csbj.2021.05.055

Genetic mapping of developmental trajectories for complex traits and diseases
Cited by: 1
Author(s): Eldad D. Shulman, Ran Elkon
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13045-020-00854-w

Identification of cross-talk between m6A and 5mC regulators associated with onco-immunogenic features and prognosis across 33 cancer types
Cited by: 44
Author(s): Yutong Chen, Jiayi Shen, Dongping Chen, Chengdong Wu, Rui Guo, Panpan Zhang, Jiawei Lv, Wenfei Li, Zi‐Xian Wang, Yu-Pei Chen
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms18040747

Metabolic Effect of an Oriental Herbal Medicine on Obesity and Its Comorbidities with Transcriptional Responses in Diet-Induced Obese Mice
Cited by: 4
Author(s): Jiyoung Choi, Ye Jin Kim, Su-Jung Cho, Eun‐Young Kwon, Ri Ryu, Myung‐Sook Choi
Software Mentions: 3
Published: over 9 years ago

10.1186/s12935-020-01587-z

Identified IGSF9 association with prognosis and hypoxia in nasopharyngeal carcinoma by bioinformatics analysis
Cited by: 6
Author(s): Danxia Huang, Qianqian Liu, Weijun Zhang, Chunyue Huang, Ronghui Zheng, Gaoqiang Xie, Hongmei Wang, Baochang Jia, Jianjun Shi, Yawei Yuan, Min Deng
Software Mentions: 3
Published: about 6 years ago

10.1002/cnm.2602

Novel wave intensity analysis of arterial pulse wave propagation accounting for peripheral reflections
Cited by: 40
Author(s): Jordi Alastruey, Anthony A. E. Hunt, Peter D. Weinberg
Software Mentions: 3
Published: almost 13 years ago

10.1038/s42003-021-01946-0

Diapause vs. reproductive programs: transcriptional phenotypes in a keystone copepod
Cited by: 14
Author(s): Petra H. Lenz, Vittoria Roncalli, Matthew Cieslak, Ann M. Tarrant, Ann M. Castelfranco, Daniel K. Hartline
Software Mentions: 3
Published: over 5 years ago

10.1093/infdis/jix519

Host Transcription Profile in Nasal Epithelium and Whole Blood of Hospitalized Children Under 2 Years of Age With Respiratory Syncytial Virus Infection
Cited by: 28
Author(s): Lien Anh Ha, Johann Pellet, H. Rogier van Doorn, Anh Tuấn Trần, Bach Hue Nguyen, Thi Thu Loan Tran, Quynh Huong Tran, Quoc Bao Vo, Nguyen Anh Tran Dac, Hong Nhien Trinh, Thi Thanh Hai Nguyen, Bao Tinh Le Binh, Huu Mai Khanh Nguyen, Minh Tien Nguyen, Quang Tung Thai, Thanh Vu Vo, Ngoc Quang Minh Ngo, Thi Kim Huyen Dang, Ngoc Huong Cao, Thu Van Tran, Lu Viet Ho, Bertrand De Meulder, Charles Auffray, Jorrit–Jan H. Hofstra, Jeremy Farrar, Juliet E. Bryant, Menno D. de Jong, Martin L. Hibberd
Software Mentions: 3
Published: about 9 years ago

10.3390/nu11020418

Gut Mucosal Proteins and Bacteriome Are Shaped by the Saturation Index of Dietary Lipids
Cited by: 40
Author(s): Nijiati Abulizi, Candice Quin, Kirsty Brown, Yee Kwan Chan, S K Gill, Deanna L. Gibson
Software Mentions: 3
Published: over 7 years ago

10.1016/j.ccell.2018.08.015

The Oncogenic Transcription Factor RUNX1/ETO Corrupts Cell Cycle Regulation to Drive Leukemic Transformation
Cited by: 75
Author(s): N Martinez-Soria, Lynsey McKenzie, Julia Draper, Anetta Ptasińska, Hasan Issa, Sandeep Potluri, Helen J. Blair, Anna Pickin, Asmida Isa, Paulynn Suyin Chin, Ricky Tirtakusuma, Dan Coleman, Sirintra Nakjang, Salam A. Assi, Victoria J. Forster, Mojgan Reza, Edward Law, Philip Berry, Dorothée Mueller, Cameron S. Osborne, Alex Elder, Simon Bomken, Deepali Pal, James M. Allan, Gareth J. Veal, Peter N. Cockerill, Christian Wichmann, Josef Vormoor, Georges Lacaud, Constanze Bonifer, Olaf Heidenreich
Software Mentions: 3
Published: about 8 years ago

10.5402/2012/546721

Computerized Decision Support System for Intraoperative Analysis of Margin Status in Breast Conservation Therapy
Cited by: 3
Author(s): Manuel E. Ruidíaz, Sarah L. Blair, Andrew C. Kummel, Jessica Wang‐Rodriguez
Software Mentions: 3
Published: almost 14 years ago

10.7150/ijbs.56152

MLKL inhibits intestinal tumorigenesis by suppressing STAT3 signaling pathway
Cited by: 11
Author(s): Qun Zhao, Xinran Cheng, Jian Guo, Yunbo Bi, Li Qing Kuang, Jianhua Ren, Jing Zhong, Longrui Pan, Xudong Zhang, Yang Guo, Yongqiang Liu, S. Jin, Yan Tan, Yu Lei
Software Mentions: 3
Published: almost 6 years ago

10.3390/cells10061271

Nucleoporin TPR Affects C2C12 Myogenic Differentiation via Regulation of Myh4 Expression
Cited by: 3
Author(s): Jana Uhlířová, Lenka Šebestová, Karel Fišer, Tomáš Sieger, Jindřiška Fišerová, Pavel Hozák
Software Mentions: 3
Published: over 5 years ago

10.1002/psp4.12091

Model-Based Network Meta-Analysis: A Framework for Evidence Synthesis of Clinical Trial Data
Cited by: 48
Author(s): David Mawdsley, Meg Bennetts, Sofia Dias, Martin Boucher, Nicky J Welton
Software Mentions: 3
Published: about 10 years ago

10.1111/cns.13254

High expression of <i>COPB2</i> predicts adverse outcomes: A potential therapeutic target for glioma
Cited by: 13
Author(s): Yan Zhou, Xuan Wang, Xing Huang, Xu‐Dong Li, Kai Chen, Hao Yu, Yujie Zhou, Ping Lv, Xiao Jiang
Software Mentions: 3
Published: almost 7 years ago

10.1186/1471-2105-15-162

A multivariate approach to the integration of multi-omics datasets
Cited by: 214
Author(s): Chen Meng, Bernhard Küster, Aedín C. Culhane, Amin Moghaddas Gholami
Software Mentions: 3
Published: over 12 years ago

10.1111/cns.13380

Molecular and clinical characterization of PARP9 in gliomas: A potential immunotherapeutic target
Cited by: 13
Author(s): Hao Xu, Songshan Chai, Yihao Wang, Jiajing Wang, Dongdong Xiao, Junjun Li, Nanxiang Xiong
Software Mentions: 3
Published: over 6 years ago

10.3390/cells9071643

The E2F Pathway Score as a Predictive Biomarker of Response to Neoadjuvant Therapy in ER+/HER2− Breast Cancer
Cited by: 75
Author(s): Masanori Oshi, Hideo Takahashi, Yoshihisa Tokumaru, Li Yan, Omar M. Rashid, Masayuki Nagahashi, Ryusei Matsuyama, Itaru Endo, Kazuaki Takabe
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms22158249

Transcriptome-Based WGCNA Analysis Reveals Regulated Metabolite Fluxes between Floral Color and Scent in Narcissus tazetta Flower
Cited by: 20
Author(s): Jingwen Yang, Yujun Ren, Deyu Zhang, Xuewei Chen, Jiazhi Huang, Yun Xu, Cristina Belén Aucapiña Criollo, Yu Zhang, Ying Miao
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-020-07156-y

Whole genome analysis of the koa wilt pathogen (Fusarium oxysporum f. sp. koae) and the development of molecular tools for early detection and monitoring
Cited by: 9
Author(s): Joe Dobbs, Mee‐Sook Kim, Nicklos S. Dudley, Ned B. Klopfenstein, Aileen Yeh, Robert D. Hauff, Tyler Jones, R. Kasten Dumroese, Philip Cannon, Jane E. Stewart
Software Mentions: 3
Published: almost 6 years ago

10.18632/aging.202493

Identification of hub genes associated with adult acute myeloid leukemia progression through weighted gene co-expression network analysis
Cited by: 4
Author(s): Ruiqi Zhu, Wenyi Lin, Liang Tang, Yu Hu
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-019-6055-9

Dynamics of transcriptome changes during subcutaneous preadipocyte differentiation in ducks
Cited by: 9
Author(s): Zheng Wang, Zhong-Tao Yin, Fan Zhang, Xiao-qin Li, Si-Rui Chen, Ning Yang, Tom E. Porter, Zhuocheng Hou
Software Mentions: 3
Published: about 7 years ago

10.1128/mBio.00454-19

Metabolic Model of the <i>Phytophthora infestans</i> -Tomato Interaction Reveals Metabolic Switches during Host Colonization
Cited by: 19
Author(s): Sander Y.A. Rodenburg, Michael Seidl, Howard S. Judelson, A. L. Vu, F. Govers, Dick de Ridder
Software Mentions: 3
Published: about 7 years ago

10.1590/1414-431X20198333

Screening potential prognostic biomarkers of long non-coding RNAs for predicting the risk of chronic kidney disease
Cited by: 11
Author(s): Na Li, Yan Cui, Min Yin, Feng Liu
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2105-12-315

Link-based quantitative methods to identify differentially coexpressed genes and gene Pairs
Cited by: 83
Author(s): Hui Yu, Baohong Liu, Zhiqiang Ye, Chun Liang, Yixue Li, Yuanyuan Li
Software Mentions: 3
Published: about 15 years ago

10.1016/j.ymben.2017.11.011

Post-translational regulation of metabolism in fumarate hydratase deficient cancer cells
Cited by: 21
Author(s): Emanuel Gonçalvès, Marco Sciacovelli, Ana S.H. Costa, Maxine Tran, Timothy Isaac Johnson, Daniel Machado, Christian Frezza, Julio Sáez-Rodríguez
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41398-020-0772-3

Gene expression changes associated with trajectories of psychopathology in a longitudinal cohort of children and adolescents
Cited by: 3
Author(s): Vanessa Kiyomi Ota, Marcos Santoro, Letícia Spíndola, Pedro Mário Pan, Andressa Simabucuro, Gabriela Xavier, Tamiris Vieira-Fonseca, Évelin Aline Zanardo, Felipe R. C. dos Santos, Julia Schäfer, Leslie Domenici Kulikowski, Pedro A. F. Galante, Paula Fontes Asprino, Elisa Brietzke, Rodrigo Grassi‐Oliveira, Luís Augusto Rohde, Eurı́pedes Constantino Miguel, Ary Gadelha, Jair J. Mari, Rodrigo Affonseca Bressan, Giovanni Abrahão Salum, Sintia Belangero
Software Mentions: 3
Published: over 6 years ago

10.1038/celldisc.2016.41

NANOG reprograms prostate cancer cells to castration resistance via dynamically repressing and engaging the AR/FOXA1 signaling axis
Cited by: 40
Author(s): Collene Jeter, Bigang Liu, Yue Lu, Hsueh-Ping Chao, Dingxiao Zhang, Xin Liu, Xin Chen, Qiuhui Li, Kiera Rycaj, Tammy Calhoun-Davis, Li Yan, Qiang Hu, Jianmin Wang, Jianjun Shen, Song Liu, Dean G. Tang
Software Mentions: 3
Published: almost 10 years ago

10.1002/ejp.1270

A machine-learned analysis of human gene polymorphisms modulating persisting pain points to major roles of neuroimmune processes
Cited by: 11
Author(s): Dario Kringel, Catharina Lippmann, Michael J. Parnham, Eija Kalso, Alfred Ultsch, Jörn Lötsch
Software Mentions: 3
Published: over 8 years ago

10.1111/cpr.12879

LncRNAs are regulated by chromatin states and affect the skeletal muscle cell differentiation
Cited by: 8
Author(s): Xiaolong Qi, Mingyang Hu, Yue Xiang, Daoyuan Wang, Yongming Xu, Ye Hou, Huanhuan Zhou, Yu Luan, Zhangxu Wang, Weiya Zhang, Xinyun Li, Zhao Song, Yi‐Fang Zhao
Software Mentions: 3
Published: about 6 years ago

10.1002/ctm2.138

Cell cycle progression score as a predictive biomarker for overall survival in patients with adrenocortical carcinoma
Cited by: 0
Author(s): Jing Sun, Run Shi, Felix Beuschlein, C. Belka, Minglun Li
Software Mentions: 3
Published: over 6 years ago

10.1038/s41398-017-0054-x

Cerebral organoids reveal early cortical maldevelopment in schizophrenia—computational anatomy and genomics, role of FGFR1
Cited by: 123
Author(s): Ewa K. Stachowiak, Courtney A. Benson, Sridhar T. Narla, Alexander Dimitri, L. E. Bayona Chuye, Siddhartha Dhiman, K. Harikrishnan, Seerat Elahi, David A. Freedman, Kristen J. Brennand, Pinaki Sarder, Michal K. Stachowiak
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41398-021-01421-8

Transcriptomics identifies STAT3 as a key regulator of hippocampal gene expression and anhedonia during withdrawal from chronic alcohol exposure
Cited by: 13
Author(s): Wei-Yang Chen, Changwei Hu, Kana Hamada, Eleonora Gatta, Ying Chen, Huaibo Zhang, Jenny Drnevich, Harish R. Krishnan, Mark Maienschein‐Cline, Dennis R. Grayson, Subhash C. Pandey, Amy W. Lasek
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-96635-7

Multi-layered proteogenomic analysis unravels cancer metastasis directed by MMP-2 and focal adhesion kinase signaling
Cited by: 11
Author(s): Yumi Kwon, Seongjun Park, Binh Thanh Nguyen, Mi Jeong Kim, Sejin Oh, Hwanho Lee, Narae Park, Hyun‐Seok Kim, Min‐Jung Kang, Byung Soh Min, Jinwon Lee, Eun Gyeong Yang, Cheolju Lee
Software Mentions: 3
Published: about 5 years ago

10.1186/s12883-020-01709-0

The prevalence of Restless Legs Syndrome/Willis-ekbom disease (RLS/WED) in the third trimester of pregnancy: a systematic review
Cited by: 18
Author(s): Niloofar Darvishi, Alireza Daneshkhah, Behnam Khaledi-Paveh, Asad Vaisi-Raygani, Masoud Mohammadi, Nader Salari, Fateme Darvishi, Alireza Abdi, Rostam Jalali
Software Mentions: 3
Published: over 6 years ago

10.1186/s13068-021-02032-7

Genome-wide association study and transcriptome analysis reveal key genes affecting root growth dynamics in rapeseed
Cited by: 17
Author(s): Keqi Li, Jie Wang, Lieqiong Kuang, Ze Tian, Xinfa Wang, Xiaoling Dun, Jinxing Tu, Hanzhong Wang
Software Mentions: 3
Published: about 5 years ago

10.1038/s41419-019-1835-3

The transcriptional landscape of lncRNAs reveals the oncogenic function of LINC00511 in ER-negative breast cancer
Cited by: 44
Author(s): Jian Zhang, Shiyao Sui, Hao Wu, Jinfeng Zhang, Xingda Zhang, Shouping Xu, Da Pang
Software Mentions: 3
Published: about 7 years ago

10.3390/cancers12061642

The Liver Microbiome Is Implicated in Cancer Prognosis and Modulated by Alcohol and Hepatitis B
Cited by: 13
Author(s): Jaideep Chakladar, Lauren Wong, Selena Z. Kuo, Wei Tse Li, Michael Yu, Eric Y. Chang, Xiao Qi Wang, Weg M. Ongkeko
Software Mentions: 3
Published: over 6 years ago

10.1042/BSR20200514

Identification of co-expressed genes associated with <i>MLL</i> rearrangement in pediatric acute lymphoblastic leukemia
Cited by: 2
Author(s): Hao Zhang, Bei Liu, Juan Cheng, Haizhen Ma, Zijian Li, Yuandi Xi
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2105-9-203

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
Cited by: 39
Author(s): Yuji Zhang, Jianhua Xuan, Benildo G. de los Reyes, Robert Clarke, Habtom W. Ressom
Software Mentions: 3
Published: over 18 years ago

10.1039/c7tx00047b

Systems toxicology meta-analysis of in vitro assessment studies: biological impact of a candidate modified-risk tobacco product aerosol compared with cigarette smoke on human organotypic cultures of the aerodigestive tract
Cited by: 22
Author(s): Anita Iskandar, Bjoern Titz, Alain Sewer, Patrice Leroy, Thomas Schneider, Filippo Zanetti, Carole Mathis, Ashraf Elamin, Stefan Frentzel, Walter K. Schlage, Florian Martin, Nikolai V. Ivanov, Manuel C. Peitsch, Julia Hoeng
Software Mentions: 3
Published: almost 10 years ago