10.3389/fgene.2021.696591

Identification of Atrial Fibrillation-Associated Genes ERBB2 and MYPN Using Genome-Wide Association and Transcriptome Expression Profile Data on Left–Right Atrial Appendages
Cited by: 3
Author(s): Xiangkun Meng, Yali Nie, Keke Wang, Chongxi Fan, Juntao Zhao, Yuan Yang
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2018.00453

Weighted Gene Co-expression Network Analysis of Endometriosis and Identification of Functional Modules Associated With Its Main Hallmarks
Cited by: 58
Author(s): Mohammad Reza Bakhtiarizadeh, Batool Hosseinpour, Maryam Shahhoseini, Arthur Korte, Peyman Gifani
Software Mentions: 3
Published: almost 8 years ago

10.3390/molecules26102929

Force Field Parameters for Fe2+4S2−4 Clusters of Dihydropyrimidine Dehydrogenase, the 5-Fluorouracil Cancer Drug Deactivation Protein: A Step towards In Silico Pharmacogenomics Studies
Cited by: 1
Author(s): Maureen Bilinga Tendwa, Lorna J. Chebon, Kevin A. Lobb, Thommas M. Musyoka, Özlem Tastan Bishop
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2019.00903

SCDevDB: A Database for Insights Into Single-Cell Gene Expression Profiles During Human Developmental Processes
Cited by: 12
Author(s): Zishuai Wang, Xikang Feng, Shuai Cheng Li
Software Mentions: 3
Published: almost 7 years ago

10.1111/1755-0998.12674

Graphics for relatedness research
Cited by: 6
Author(s): Iván Galván-Femenía, Jan Graffelman, Carles Barceló-i-Vidal
Software Mentions: 3
Published: over 9 years ago

10.1074/mcp.RA120.002345

Mutation-independent Proteomic Signatures of Pathological Progression in Murine Models of Duchenne Muscular Dystrophy
Cited by: 20
Author(s): van Westering Tle., Henrik J. Johansson, Britt Hanson, Anna M.L. Coenen-Stass, Yulia Lomonosova, Jun Tanihata, Norio Matsuki, Toshifumi Yokota, Shin’ichi Takeda, Janne Lehtiö, Matthew J. Wood, Samir El Andaloussi, Yosuke Aoki, Thomas C. Roberts
Software Mentions: 3
Published: over 5 years ago

10.1016/j.molcel.2018.01.034

NADH Shuttling Couples Cytosolic Reductive Carboxylation of Glutamine with Glycolysis in Cells with Mitochondrial Dysfunction
Cited by: 157
Author(s): Edoardo Gaude, Christina Schmidt, Payam A. Gammage, Aurélien Dugourd, Thomas S. Blacker, Sew Peak Chew, Julio Sáez-Rodríguez, John S. O’Neill, György Szabadkai, Michal Minczuk, Christian Frezza
Software Mentions: 3
Published: over 8 years ago

10.3390/plants9070919

Effects of Two Invasive Weeds on Arthropod Community Structure on the Central Plateau of New Zealand
Cited by: 6
Author(s): Evans Effah, D. Paul Barrett, Paul G. Peterson, Murray A. Potter, Jarmo K. Holopainen, Andrea Clavijo McCormick
Software Mentions: 3
Published: about 6 years ago

10.3390/molecules25040904

Understanding the Pyrimethamine Drug Resistance Mechanism via Combined Molecular Dynamics and Dynamic Residue Network Analysis
Cited by: 26
Author(s): Arnold Amusengeri, Rolland Bantar Tata, Özlem Tastan Bishop
Software Mentions: 3
Published: over 6 years ago

10.3390/ph14040351

Absence of Association between Methylene Blue Reduced Susceptibility and Polymorphisms in 12 Genes Involved in Antimalarial Drug Resistance in African Plasmodium falciparum
Cited by: 2
Author(s): Mathieu Gendrot, Océane Delandre, M Robert, Francis Tsombeng Foguim, B. Nicolas, Rémy Amalvict, Isabelle Fonta, Joël Mosnier, Marylin Madamet, Bruno Pradines
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2021.690264

Comparative Transcriptome and Weighted Gene Co-expression Network Analysis Identify Key Transcription Factors of Rosa chinensis ‘Old Blush’ After Exposure to a Gradual Drought Stress Followed by Recovery
Cited by: 7
Author(s): Xin Jia, Hui Feng, Yingjie Bu, Naizhe Ji, Yingmin Lyu, Shiwei Zhao
Software Mentions: 3
Published: about 5 years ago

10.1186/1476-4598-9-74

Gene expression in nontumoral liver tissue and recurrence-free survival in hepatitis C virus-positive hepatocellular carcinoma
Cited by: 69
Author(s): Mai Tsuchiya, Joel S. Parker, Hiroshi Kono, Masanori Matsuda, Hideki Fujii, Ivan Rusyn
Software Mentions: 3
Published: over 16 years ago

10.1186/s12888-020-02499-y

Dysregulation of amino acids and lipids metabolism in schizophrenia with violence
Cited by: 19
Author(s): Xiacan Chen, Jiajun Xu, Jing Tang, Xinhua Dai, Haolan Huang, Ruochen Cao, Junmei Hu
Software Mentions: 3
Published: over 6 years ago

10.1186/1476-4598-13-27

RNAi-mediated silencing of MLL-AF9 reveals leukemia-associated downstream targets and processes
Cited by: 29
Author(s): Katrin K. Fleischmann, Philipp Pagel, Irene Schmid, Adelbert A. Roscher
Software Mentions: 3
Published: over 12 years ago

10.1186/1476-4598-11-41

Gene expression changes as markers of early lapatinib response in a panel of breast cancer cell lines
Cited by: 23
Author(s): Fiona O’Neill, Stephen F. Madden, Sinéad Aherne, Martin Clynes, John Crown, Padraig Doolan, Robert O’Connor
Software Mentions: 3
Published: about 14 years ago

10.1186/s12919-021-00223-6

Proceedings of ‘FETP-ICON 2020’ Conference
Cited by: 0
Author(s):
Software Mentions: 3
Published: about 5 years ago

10.1093/molbev/msaa002

Disrupted Gene Networks in Subfertile Hybrid House Mice
Cited by: 20
Author(s): Katy Morgan, Bettina Harr, Michael A. White, Bret A. Payseur, Leslie M. Turner
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2020.558725

Transcriptome Analysis of the Cerebellum of Mice Fed a Manganese-Deficient Diet
Cited by: 3
Author(s): Young Ah Seo, Eun‐Kyung Choi, Luisa Aring, Molly Paschall, Shigeki Iwase
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms8101579

The Core and Distinction of the Gut Microbiota in Chinese Populations across Geography and Ethnicity
Cited by: 16
Author(s): Dong‐Tsamn Lin, Ran Wang, Junjie Luo, Fazheng Ren, Zhenglong Gu, Yiqiang Zhao, Liang Zhao
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12885-021-08687-7

A novel survival model based on a Ferroptosis-related gene signature for predicting overall survival in bladder cancer
Cited by: 22
Author(s): Yingchun Liang, Fangdie Ye, Chenyang Xu, Lina Zou, Yun Hu, Jimeng Hu, Haowen Jiang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fendo.2020.00138

Developmentally Driven Changes in Adipogenesis in Different Fat Depots Are Related to Obesity
Cited by: 10
Author(s): Jana Breitfeld, Stephanie Kehr, Luise Müller, Peter F. Stadler, Yvonne Böttcher, Matthias Blüher, Michael Stümvoll, Peter Kovacs
Software Mentions: 3
Published: over 6 years ago

10.1099/mgen.0.000184

SuperDCA for genome-wide epistasis analysis
Cited by: 21
Author(s): Santeri Puranen, Maiju Pesonen, Johan Pensar, Ying Xu, John A. Lees, Stephen D. Bentley, Nicholas J. Croucher, Jukka Corander
Software Mentions: 3
Published: about 8 years ago

10.1186/s12934-021-01509-2

Engineering Escherichia coli for the utilization of ethylene glycol
Cited by: 11
Author(s): Aditya Vikram Pandit, Emma Harrison, Radhakrishnan Mahadevan
Software Mentions: 3
Published: over 5 years ago

10.3389/fendo.2020.571151

Microarray Data of Lacrimal Gland Implicates Dysregulated Protein Processing in Endoplasmic Reticulum in Graves’ Ophthalmopathy
Cited by: 1
Author(s): Wenling Tu, Jia Yao, Zhanjun Mei, Xue Jiang, Yu-Hong Shi
Software Mentions: 3
Published: over 5 years ago

10.3389/fcell.2021.702112

Characterizing the Metabolic and Immune Landscape of Non-small Cell Lung Cancer Reveals Prognostic Biomarkers Through Omics Data Integration
Cited by: 5
Author(s): Fengjiao Wang, Yuanfu Zhang, Yangyang Hao, Xuexin Li, Yue Qi, Mengyu Xin, Qifan Xiao, Peng Wang
Software Mentions: 3
Published: about 5 years ago

10.15252/msb.20188462

Enzyme promiscuity shapes adaptation to novel growth substrates
Cited by: 47
Author(s): Gabriela I. Guzmán, Troy E. Sandberg, Ryan A. LaCroix, Ákos Nyerges, Henrietta Papp, Markus de Raad, Zachary A. King, Ying Hefner, Trent Northen, Richard A. Notebaart, Csaba Pál, Bernhard Palsson, Balázs Papp, Adam M. Feist
Software Mentions: 3
Published: over 7 years ago

10.1186/s12885-017-3237-1

Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue
Cited by: 26
Author(s): Bojana Jovanović, Quanhu Sheng, Robert S. Seitz, Kasey Lawrence, Stephan W. Morris, Lance R. Thomas, David R. Hout, Brock L. Schweitzer, Yan Guo, Jennifer A. Pietenpol, Brian D. Lehmann
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pcbi.1000920

Latent Factor Analysis to Discover Pathway-Associated Putative Segmental Aneuploidies in Human Cancers
Cited by: 48
Author(s): Joseph E. Lucas, Hsiu‐Ni Kung, Jen‐Tsan Chi
Software Mentions: 3
Published: almost 16 years ago

10.3389/fcell.2020.620164

Analysis of Cyclin-Dependent Kinase 1 as an Independent Prognostic Factor for Gastric Cancer Based on Statistical Methods
Cited by: 7
Author(s): Xu Zhang, Hua Ma, Quan Zou, Jin Wu
Software Mentions: 3
Published: over 5 years ago

10.3390/metabo10080303

Metabolic Modelling as a Framework for Metabolomics Data Integration and Analysis
Cited by: 42
Author(s): Svetlana Volkova, Marta R. A. Matos, Matthias Mattanovich, Igor Marín de Mas
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1004584

Computing the Local Field Potential (LFP) from Integrate-and-Fire Network Models
Cited by: 369
Author(s): Annalisa Mazzoni, Henrik Lindén, Hermann Cuntz, Anders Lansner, Stefano Panzeri, Gaute T. Einevoll
Software Mentions: 3
Published: over 10 years ago

10.1186/s12915-020-00943-9

The hard clam genome reveals massive expansion and diversification of inhibitors of apoptosis in Bivalvia
Cited by: 45
Author(s): Hao Song, Ximing Guo, Lina Sun, Qianghui Wang, Fengming Han, Haiyan Wang, Gregory A. Wray, Phillip L. Davidson, Qing Wang, Zhi Hu, Cong Zhou, Zhi Yu, Mei‐Jie Yang, Jie Feng, Shi Pu, Yi Zhou, Libin Zhang, Tao Zhang
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2019.00036

Integrative Analysis of Transcriptome and GWAS Data to Identify the Hub Genes Associated With Milk Yield Trait in Buffalo
Cited by: 45
Author(s): Tingxian Deng, Aixin Liang, Shasha Liang, Xiaoya Ma, Xingrong Lu, Anqin Duan, Chaoyou Pang, Guohua Hua, Shenhe Liu, Giuseppe Campanile, Angela Salzano, B. Gasparrini, Xianwei Liang, Liguo Yang
Software Mentions: 3
Published: over 7 years ago

10.1186/s12883-020-01709-0

The prevalence of Restless Legs Syndrome/Willis-ekbom disease (RLS/WED) in the third trimester of pregnancy: a systematic review
Cited by: 18
Author(s): Niloofar Darvishi, Alireza Daneshkhah, Behnam Khaledi-Paveh, Asad Vaisi-Raygani, Masoud Mohammadi, Nader Salari, Fateme Darvishi, Alireza Abdi, Rostam Jalali
Software Mentions: 3
Published: over 6 years ago

10.3390/metabo5040794

Flux Balance Analysis Inspired Bioprocess Upgrading for Lycopene Production by a Metabolically Engineered Strain of Yarrowia lipolytica
Cited by: 28
Author(s): Komi Nambou, Xingxing Jian, Xinkai Zhang, Liujing Wei, Jiajia Lou, Catherine Madzak, Qiang Hua
Software Mentions: 3
Published: over 10 years ago

10.1111/evo.12476

THE CHANGING PACE OF INSULAR LIFE: 5000 YEARS OF MICROEVOLUTION IN THE ORKNEY VOLE<i>(MICROTUS ARVALIS ORCADENSIS)</i>
Cited by: 50
Author(s): Thomas Cucchi, Ross Barnett, Natalia Martínková, Sabrina Renaud, Élodie Renvoisé, Allowen Evin, Alison Sheridan, Ingrid Mainland, Caroline Wickham-Jones, Christelle Tougard, Jean‐Pierre Quéré, Michel Pascal, M. Pascal, Gerald Heckel, Paul O’Higgins, Jeremy B. Searle, Keith Dobney
Software Mentions: 3
Published: about 12 years ago

10.1186/s40164-020-00164-4

Frequent upregulation of G9a promotes RelB-dependent proliferation and survival in multiple myeloma
Cited by: 8
Author(s): Xi Yun Zhang, Deepa Rajagopalan, Tae-Hoon Chung, Lissa Hooi, Tan Boon Toh, Johann Shane Tian, Masturah Bte Mohd Abdul Rashid, Noor Rashidha Bte Meera Sahib, Meijia Gu, Jackwee Lim, Wilson Wang, Wee Joo Chng, Sudhakar Jha, Edward Kai‐Hua Chow
Software Mentions: 3
Published: about 6 years ago

10.3390/foods8100461

Liking Product Landscape: Going Deeper into Understanding Consumers’ Hedonic Evaluations
Cited by: 4
Author(s): Claudia N. Sánchez, Julieta Domínguez-Soberanes, Héctor B. Escalona‐Buendía, Mario Graff, Sebastián Gutiérrez, Gabriela Sánchez
Software Mentions: 3
Published: almost 7 years ago

10.1002/ejp.1270

A machine-learned analysis of human gene polymorphisms modulating persisting pain points to major roles of neuroimmune processes
Cited by: 11
Author(s): Dario Kringel, Catharina Lippmann, Michael J. Parnham, Eija Kalso, Alfred Ultsch, Jörn Lötsch
Software Mentions: 3
Published: about 8 years ago

10.1016/j.ymben.2017.11.011

Post-translational regulation of metabolism in fumarate hydratase deficient cancer cells
Cited by: 21
Author(s): Emanuel Gonçalvès, Marco Sciacovelli, Ana S.H. Costa, Maxine Tran, Timothy Isaac Johnson, Daniel Machado, Christian Frezza, Julio Sáez-Rodríguez
Software Mentions: 3
Published: over 8 years ago

10.12669/pjms.343.14644

Whole Genome Sequencing instead of Whole Exome Sequencing is required to identify the Genetic Causes of Polycystic Ovary Syndrome in Pakistani families
Cited by: 6
Author(s): Muhammad Tariq Masood Khan, Rubina Nazli, Jawad Ahmed, Sulman Basit
Software Mentions: 3
Published: about 8 years ago

10.1155/2021/3524571

RNA-Seq Expression Analysis of Chronic Asthmatic Mice with Bu-Shen-Yi-Qi Formula Treatment and Prediction of Regulated Gene Targets of Anti-Airway Remodeling
Cited by: 3
Author(s): Jie Cui, Zexi Lv, Fangzhou Teng, Yi Liu, Weifeng Tang, WenQian Wang, Tulake Wuniqiemu, Jingjing Qin, Xueyi Zhu, Ying Wei, Jingcheng Dong
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1006706

Mapping of 79 loci for 83 plasma protein biomarkers in cardiovascular disease
Cited by: 174
Author(s): Lasse Folkersen, Eric B. Fauman, Maria Sabater‐Lleal, Rona J. Strawbridge, Mattias Frånberg, Bengt Sennblad, Damiano Baldassarre, Fabrizio Veglia, Steve E. Humphries, Rainer Rauramaa, Ulf dé Fairé, Andries J. Smit, Philippe Giral, Sudhir Kurl, Elmo Mannarino, Stefan Enroth, Åsa Johansson, Sofia Bosdotter Enroth, Stefan Gustafsson, Lars Lind, Cecilia M. Lindgren, Andrew P. Morris, Vilmantas Giedraitis, Angela Silveira, Anders Franco‐Cereceda, Elena Tremoli, Ulf Gyllensten, Erik Ingelsson, Søren Brunak, Per Eriksson, Daniel Ziemek, Anders Hamsten, Anders Mälarstig
Software Mentions: 3
Published: over 9 years ago

10.1210/endocr/bqaa009

Protein Profile Changes in Circulating Placental Extracellular Vesicles in Term and Preterm Births: A Longitudinal Study
Cited by: 29
Author(s): Ramkumar Menon, Chirantan Debnath, Andrew Lai, Dominic Guanzon, Shinjini Bhatnagar, Pallavi Kshetrapal, Samantha Sheller‐Miller, Carlos Salomón
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.4504

Methylation divergence of invasive<i>Ciona</i>ascidians: Significant population structure and local environmental influence
Cited by: 17
Author(s): Ping Ni, Shiguo Li, Ya‐Ping Lin, Wei Xiong, Xuena Huang, Aibin Zhan
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2105-15-162

A multivariate approach to the integration of multi-omics datasets
Cited by: 214
Author(s): Chen Meng, Bernhard Küster, Aedín C. Culhane, Amin Moghaddas Gholami
Software Mentions: 3
Published: about 12 years ago

10.3390/md18090468

Optimization of Extraction of Bioactive Peptides from Monkfish (Lophius litulon) and Characterization of Their Role in H2O2-Induced Lesion
Cited by: 14
Author(s): Xiaoxiao Tian, Jiawen Zheng, Baogui Xu, Jiena Ye, Zuisu Yang, Yuan Fang
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12920-020-00767-0

Unraveling the molecular heterogeneity in type 2 diabetes: a potential subtype discovery followed by metabolic modeling
Cited by: 7
Author(s): Maryam Khoshnejat, Kaveh Kavousi, Ali Mohammad Banaei-Moghaddam, Ali Akbar Moosavi-Movahedi
Software Mentions: 3
Published: almost 6 years ago

10.15252/emmm.201708304

A <scp>HIF</scp> – <scp>LIMD</scp> 1 negative feedback mechanism mitigates the pro‐tumorigenic effects of hypoxia
Cited by: 17
Author(s): Daniel E. Foxler, Katherine S. Bridge, John G. Foster, Paul Grevitt, Sean Curry, Kunal M. Shah, Kathryn M. Davidson, A. Nagano, Emanuela Gadaleta, Hefin Rhys, Paul Kennedy, Miguel A. Hermida, Ting‐Yu Chang, Peter E. Shaw, Louise E. Reynolds, Tristan R. McKay, Hsei Wei Wang, Paulo S. Ribeiro, Michael J. Plevin, Dimitrios Lagos, Nick R. Lemoine, Prabhakar Rajan, Trevor A. Graham, Claude Chelala, Kairbaan Hodivala‐Dilke, Ian Spendlove, Tyson V. Sharp
Software Mentions: 3
Published: about 8 years ago

10.1186/s12920-015-0141-x

Extensive alterations of the whole-blood transcriptome are associated with body mass index: results of an mRNA profiling study involving two large population-based cohorts
Cited by: 21
Author(s): Georg Homuth, Simone Wahl, Christian Müller, Claudia Schurmann, Ulrike Mäder, Stefan Blankenberg, Maren Carstensen, Marcus Dörr, Karlhans Endlich, Christian Englbrecht, Stephan B. Felix, Christian Gieger, Harald Grallert, Christian Herder, Thomas Illig, Jochen Kruppa, Carola Marzi, Julia Mayerle, Thomas Meitinger, Andres Metspalu, Matthias Nauck, Annette Peters, Wolfgang Rathmann, Eva Reinmaa, Rainer Rettig, Michael Roden, Arne Schillert, Katharina Schramm, Leif Steil, Konstantin Strauch, Alexander Teumer, Henry Völzke, Henri Wallaschofski, Philipp S. Wild, Andreas Ziegler, Uwe Völker, Holger Prokisch, Tanja Zeller
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12944-018-0767-8

Associations between three common single nucleotide polymorphisms (rs266729, rs2241766, and rs1501299) of ADIPOQ and cardiovascular disease: a meta-analysis
Cited by: 13
Author(s): Joseph Sam Kanu, Shuang Qiu, Cheng Yi, Ri Li, Changgui Kou, Yan Gu, Yang Bai, Jingwei Shi, Yong Li, Yunkai Liu, Yaqin Yu, Yawen Liu
Software Mentions: 3
Published: about 8 years ago

10.1098/rsbl.2018.0064

Non-uniform evolutionary response of gecko eye size to changes in diel activity patterns
Cited by: 12
Author(s): Lars Schmitz, Timothy E. Higham
Software Mentions: 3
Published: over 8 years ago

10.1172/jci.insight.97011

Peripheral tissues reprogram CD8+ T cells for pathogenicity during graft-versus-host disease
Cited by: 19
Author(s): Pedro M. Sousa, Séverine Cire, Thomas Conlan, Laura Jardine, Claire Tkacz, Ivana R. Ferrer, C Lomas, Sophie Ward, Heather C. West, Simone Dertschnig, Sven Blobner, Terry K. Means, Stephen Henderson, Daniel H. Kaplan, Matthew Collin, Vincent Plagnol, Clare Bennett, Ronjon Chakraverty
Software Mentions: 3
Published: over 8 years ago

10.3390/ijms20071587

Transcriptomic Sequencing and Co-Expression Network Analysis on Key Genes and Pathways Regulating Nitrogen Use Efficiency in Myriophyllum aquaticum
Cited by: 9
Author(s): Rui Wang, Shengjun Xu, Cancan Jiang, Hanjun Sun, Shugeng Feng, Sining Zhou, Guoqiang Zhuang, Zhihui Bai
Software Mentions: 3
Published: over 7 years ago

10.1186/s40170-021-00272-7

Robust metabolic transcriptional components in 34,494 patient-derived cancer-related samples and cell lines
Cited by: 3
Author(s): Vincent Christiaan Leeuwenburgh, Carlos G. Urzúa-Traslaviña, Arkajyoti Bhattacharya, Marthe T. C. Walvoort, Mathilde Jalving, Steven de Jong, Rudolf S.N. Fehrmann
Software Mentions: 3
Published: almost 5 years ago

10.1186/1755-8794-3-59

Birt-Hogg-Dubé renal tumors are genetically distinct from other renal neoplasias and are associated with up-regulation of mitochondrial gene expression
Cited by: 71
Author(s): Jeff Klomp, David Petillo, Natalie M. Niemi, Karl Dykema, Jindong Chen, Ximing J. Yang, Annika Sääf, Peter Zickert, Markus Aly, Ulf S.R. Bergerheim, Magnus Nordenskjöld, Sophie Gad, Sophie Giraud, Yves Denoux, Laurent Yonneau, A. Méjean, Viorel Vasiliu, Stéphane Richard, Jeffrey P. MacKeigan, Bin Tean Teh, Kyle A. Furge
Software Mentions: 3
Published: over 15 years ago

10.3390/ijms151120833

Genome-Wide Transcriptome Profiles of Rice Hybrids and Their Parents
Cited by: 11
Author(s): E Zhiguo, Shanshan Huang, Yuping Zhang, Ge Liu, Lei Wang
Software Mentions: 3
Published: over 11 years ago

10.3390/ijms18040747

Metabolic Effect of an Oriental Herbal Medicine on Obesity and Its Comorbidities with Transcriptional Responses in Diet-Induced Obese Mice
Cited by: 4
Author(s): Jiyoung Choi, Ye Jin Kim, Su-Jung Cho, Eun‐Young Kwon, Ri Ryu, Myung‐Sook Choi
Software Mentions: 3
Published: over 9 years ago

10.1016/j.dib.2021.106730

Gaze tracking dataset for comparison of smooth and saccadic eye tracking
Cited by: 2
Author(s): Adam Pantanowitz, Kimoon Kim, Chelsey Chewins, David M. Rubin
Software Mentions: 3
Published: over 5 years ago

10.1093/database/baw099

SorghumFDB: sorghum functional genomics database with multidimensional network analysis
Cited by: 40
Author(s): Tian Tian, Qi You, Liwei Zhang, Xin Yi, Hengyu Yan, Wenying Xu, Zhen Su
Software Mentions: 3
Published: over 10 years ago

10.1186/1471-2105-14-212

Linear combination test for gene set analysis of a continuous phenotype
Cited by: 8
Author(s): Irina Dinu, Xiaoming Wang, Linda E. Kelemen, Shabnam Vatanpour, Saumyadipta Pyne
Software Mentions: 3
Published: about 13 years ago

10.1186/s13000-014-0210-z

Unveiling transcription factor regulation and differential co-expression genes in Duchenne muscular dystrophy
Cited by: 7
Author(s): Lijun Tian, Junhua Cao, Xingqiang Deng, Chuanling Zhang, Tong Qian, Xianxiang Song, Baoshan Huang
Software Mentions: 3
Published: almost 12 years ago

10.1186/s12916-015-0282-y

Multi-omic signature of body weight change: results from a population-based cohort study
Cited by: 58
Author(s): Simone Wahl, Susanne Vogt, Ferdinand Stückler, Jan Krumsiek, Jörg Bartel, Tim Kacprowski, Katharina Schramm, Maren Carstensen, Wolfgang Rathmann, Michael Roden, Carolin Jourdan, Antti J. Kangas, Pasi Soininen, Mika Ala‐Korpela, Ute Nöthlings, Heiner Boeing, Fabian J. Theis, Christa Meisinger, Mélanie Waldenberger, Karsten Suhre, Georg Homuth, Christian Gieger, Gabi Kastenmüller, Thomas Illig, Jakob Linseisen, Annette Peters, Holger Prokisch, Christian Herder, Barbara Thorand, Harald Grallert
Software Mentions: 3
Published: over 11 years ago

10.7554/eLife.36330

TFAP2 transcription factors are regulators of lipid droplet biogenesis
Cited by: 31
Author(s): Cameron C. Scott, Stefania Vossio, Jacques Rougemont, Jean Grüenberg
Software Mentions: 3
Published: almost 8 years ago

10.1016/j.csbj.2020.04.011

Multi-omics systems toxicology study of mouse lung assessing the effects of aerosols from two heat-not-burn tobacco products and cigarette smoke
Cited by: 21
Author(s): Bjoern Titz, Justyna Szostak, Alain Sewer, Blaine Phillips, Catherine Nury, Thomas Schneider, Sophie Dijon, Oksana Lavrynenko, Ashraf Elamin, Emmanuel Guedj, Ee Tsin Wong, Stefan Lebrun, Grégory Vuillaume, Athanasios Kondylis, Sylvain Gubian, Stéphane Cano, Patrice Leroy, Brian Keppler, Nikolai V. Ivanov, Patrick Vanscheeuwijck, Florian Martin, Manuel C. Peitsch, Julia Hoeng
Software Mentions: 3
Published: over 6 years ago

10.1016/j.csbj.2021.05.055

Genetic mapping of developmental trajectories for complex traits and diseases
Cited by: 1
Author(s): Eldad D. Shulman, Ran Elkon
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.33070

Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice
Cited by: 67
Author(s): Roman M. Stilling, Gerard M. Moloney, Feargal J. Ryan, Alan E. Hoban, Thomaz F.S. Bastiaanssen, Fergus Shanahan, Gerard Clarke, Marcus J. Claesson, Timothy G. Dinan, John F. Cryan
Software Mentions: 3
Published: about 8 years ago

10.3389/fcvm.2021.713983

Pan-Cancer Analysis of Atrial-Fibrillation-Related Innate Immunity Gene ANXA4
Cited by: 6
Author(s): Tao Yan, Shijie Zhu, Yu Shi, Changming Xie, Miao Zhu, Yangyang Zhang, Chunsheng Wang, Changfa Guo
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12935-020-01587-z

Identified IGSF9 association with prognosis and hypoxia in nasopharyngeal carcinoma by bioinformatics analysis
Cited by: 6
Author(s): Danxia Huang, Qianqian Liu, Weijun Zhang, Chunyue Huang, Ronghui Zheng, Gaoqiang Xie, Hongmei Wang, Baochang Jia, Jianjun Shi, Yawei Yuan, Min Deng
Software Mentions: 3
Published: almost 6 years ago

10.1155/2021/9971353

P3H4 Overexpression Serves as a Prognostic Factor in Lung Adenocarcinoma
Cited by: 5
Author(s): Xiangfeng Jin, Haiqing Zhou, Jianfang Song, Hong Cui, Yiren Luo, Haiping Jiang
Software Mentions: 3
Published: about 5 years ago

10.1016/j.dib.2017.10.014

Waste management CDM projects barriers NVivo 10® qualitative dataset
Cited by: 5
Author(s): André Luiz Bufoni, Aracéli Cristina de Sousa Ferreira, Luciano Basto Oliveira
Software Mentions: 3
Published: over 8 years ago

10.1155/2020/3126592

Identification of Heat-Responsive Genes in Guar [<i>Cyamopsis tetragonoloba</i> (L.) Taub]
Cited by: 8
Author(s): Aref Alshameri, Fahad Al‐Qurainy, Abdel-Rhman Z. Gaafar, Salim Khan, Mohammad Nadeem, Saleh Alansi
Software Mentions: 3
Published: about 6 years ago

10.1016/j.ccell.2018.08.015

The Oncogenic Transcription Factor RUNX1/ETO Corrupts Cell Cycle Regulation to Drive Leukemic Transformation
Cited by: 75
Author(s): N Martinez-Soria, Lynsey McKenzie, Julia Draper, Anetta Ptasińska, Hasan Issa, Sandeep Potluri, Helen J. Blair, Anna Pickin, Asmida Isa, Paulynn Suyin Chin, Ricky Tirtakusuma, Dan Coleman, Sirintra Nakjang, Salam A. Assi, Victoria J. Forster, Mojgan Reza, Edward Law, Philip Berry, Dorothée Mueller, Cameron S. Osborne, Alex Elder, Simon Bomken, Deepali Pal, James M. Allan, Gareth J. Veal, Peter N. Cockerill, Christian Wichmann, Josef Vormoor, Georges Lacaud, Constanze Bonifer, Olaf Heidenreich
Software Mentions: 3
Published: almost 8 years ago

10.1186/s10194-017-0817-z

11th European Headache Federation Congress jointly with 31st Congress of the Italian Society for the Study of Headaches
Cited by: 6
Author(s): Brigida Fierro, Giuseppe Cosentino, Salvatore Cillino, Filippo Brighina, Viviana Firpo
Software Mentions: 3
Published: almost 9 years ago

10.1002/ctm2.138

Cell cycle progression score as a predictive biomarker for overall survival in patients with adrenocortical carcinoma
Cited by: 0
Author(s): Jing Sun, Run Shi, Felix Beuschlein, C. Belka, Minglun Li
Software Mentions: 3
Published: about 6 years ago

10.1002/cnm.2602

Novel wave intensity analysis of arterial pulse wave propagation accounting for peripheral reflections
Cited by: 40
Author(s): Jordi Alastruey, Anthony A. E. Hunt, Peter D. Weinberg
Software Mentions: 3
Published: almost 13 years ago

10.1002/psp4.12091

Model-Based Network Meta-Analysis: A Framework for Evidence Synthesis of Clinical Trial Data
Cited by: 48
Author(s): David Mawdsley, Meg Bennetts, Sofia Dias, Martin Boucher, Nicky J Welton
Software Mentions: 3
Published: about 10 years ago

10.1111/cns.13254

High expression of <i>COPB2</i> predicts adverse outcomes: A potential therapeutic target for glioma
Cited by: 13
Author(s): Yan Zhou, Xuan Wang, Xing Huang, Xu‐Dong Li, Kai Chen, Hao Yu, Yujie Zhou, Ping Lv, Xiao Jiang
Software Mentions: 3
Published: almost 7 years ago

10.1111/cns.13380

Molecular and clinical characterization of PARP9 in gliomas: A potential immunotherapeutic target
Cited by: 13
Author(s): Hao Xu, Songshan Chai, Yihao Wang, Jiajing Wang, Dongdong Xiao, Junjun Li, Nanxiang Xiong
Software Mentions: 3
Published: over 6 years ago

10.1186/s13045-020-00854-w

Identification of cross-talk between m6A and 5mC regulators associated with onco-immunogenic features and prognosis across 33 cancer types
Cited by: 44
Author(s): Yutong Chen, Jiayi Shen, Dongping Chen, Chengdong Wu, Rui Guo, Panpan Zhang, Jiawei Lv, Wenfei Li, Zi‐Xian Wang, Yu-Pei Chen
Software Mentions: 3
Published: over 6 years ago

10.5402/2012/546721

Computerized Decision Support System for Intraoperative Analysis of Margin Status in Breast Conservation Therapy
Cited by: 3
Author(s): Manuel E. Ruidíaz, Sarah L. Blair, Andrew C. Kummel, Jessica Wang‐Rodriguez
Software Mentions: 3
Published: over 13 years ago

10.7150/ijbs.56152

MLKL inhibits intestinal tumorigenesis by suppressing STAT3 signaling pathway
Cited by: 11
Author(s): Qun Zhao, Xinran Cheng, Jian Guo, Yunbo Bi, Li Qing Kuang, Jianhua Ren, Jing Zhong, Longrui Pan, Xudong Zhang, Yang Guo, Yongqiang Liu, S. Jin, Yan Tan, Yu Lei
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0231771

Phytoplankton transcriptomic and physiological responses to fixed nitrogen in the California current system
Cited by: 3
Author(s): Irina N. Shilova, Jonathan D. Magasin, Matthew M. Mills, Julie Robidart, Kendra A. Turk‐Kubo, Jonathan P. Zehr
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-020-07156-y

Whole genome analysis of the koa wilt pathogen (Fusarium oxysporum f. sp. koae) and the development of molecular tools for early detection and monitoring
Cited by: 9
Author(s): Joe Dobbs, Mee‐Sook Kim, Nicklos S. Dudley, Ned B. Klopfenstein, Aileen Yeh, Robert D. Hauff, Tyler Jones, R. Kasten Dumroese, Philip Cannon, Jane E. Stewart
Software Mentions: 3
Published: almost 6 years ago

10.18632/aging.202493

Identification of hub genes associated with adult acute myeloid leukemia progression through weighted gene co-expression network analysis
Cited by: 4
Author(s): Ruiqi Zhu, Wenyi Lin, Liang Tang, Yu Hu
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-019-6055-9

Dynamics of transcriptome changes during subcutaneous preadipocyte differentiation in ducks
Cited by: 9
Author(s): Zheng Wang, Zhong-Tao Yin, Fan Zhang, Xiao-qin Li, Si-Rui Chen, Ning Yang, Tom E. Porter, Zhuocheng Hou
Software Mentions: 3
Published: almost 7 years ago

10.1590/1414-431X20198333

Screening potential prognostic biomarkers of long non-coding RNAs for predicting the risk of chronic kidney disease
Cited by: 11
Author(s): Na Li, Yan Cui, Min Yin, Feng Liu
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2105-12-315

Link-based quantitative methods to identify differentially coexpressed genes and gene Pairs
Cited by: 83
Author(s): Hui Yu, Baohong Liu, Zhiqiang Ye, Chun Liang, Yixue Li, Yuanyuan Li
Software Mentions: 3
Published: about 15 years ago

10.1371/journal.pone.0257254

Knocking out TMEM38B in human foetal osteoblasts hFOB 1.19 by CRISPR/Cas9: A model for recessive OI type XIV
Cited by: 4
Author(s): Laura Leoni, Francesca Tonelli, Roberta Besio, Roberta Gioia, Francesco Moccia, Antonio Rossi, Antonella Forlino
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0219486

Caenorhabditis elegans hub genes that respond to amyloid beta are homologs of genes involved in human Alzheimer’s disease
Cited by: 14
Author(s): Rasoul Godini, Roger Pocock, Hossein Fallahi
Software Mentions: 3
Published: about 7 years ago

10.1038/s41398-021-01421-8

Transcriptomics identifies STAT3 as a key regulator of hippocampal gene expression and anhedonia during withdrawal from chronic alcohol exposure
Cited by: 13
Author(s): Wei-Yang Chen, Changwei Hu, Kana Hamada, Eleonora Gatta, Ying Chen, Huaibo Zhang, Jenny Drnevich, Harish R. Krishnan, Mark Maienschein‐Cline, Dennis R. Grayson, Subhash C. Pandey, Amy W. Lasek
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0022295

Randomizing Genome-Scale Metabolic Networks
Cited by: 16
Author(s): Areejit Samal, O. C. Martin
Software Mentions: 3
Published: about 15 years ago

10.1038/s41398-020-0772-3

Gene expression changes associated with trajectories of psychopathology in a longitudinal cohort of children and adolescents
Cited by: 3
Author(s): Vanessa Kiyomi Ota, Marcos Santoro, Letícia Spíndola, Pedro Mário Pan, Andressa Simabucuro, Gabriela Xavier, Tamiris Vieira-Fonseca, Évelin Aline Zanardo, Felipe R. C. dos Santos, Julia Schäfer, Leslie Domenici Kulikowski, Pedro A. F. Galante, Paula Fontes Asprino, Elisa Brietzke, Rodrigo Grassi‐Oliveira, Luís Augusto Rohde, Eurı́pedes Constantino Miguel, Ary Gadelha, Jair J. Mari, Rodrigo Affonseca Bressan, Giovanni Abrahão Salum, Sintia Belangero
Software Mentions: 3
Published: over 6 years ago

10.1186/s12881-017-0393-8

Exome sequencing identified rare variants in genes HSPG2 and ATP2B4 in a family segregating developmental dysplasia of the hip
Cited by: 30
Author(s): Sulman Basit, Alia M. Albalawi, Essa Alharby, Khalid I. Khoshhal
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0138204

A Systematic Review and Meta-Analysis of the Efficacy of Anti-Toxoplasma gondii Medicines in Humans
Cited by: 90
Author(s): Haixia Wei, Shanshan Wei, David S. Lindsay, Hong‐Juan Peng
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0164353

Induced Human Decidual NK-Like Cells Improve Utero-Placental Perfusion in Mice
Cited by: 20
Author(s): Ricardo de Carvalho Cavalli, Ana Sofia Cerdeira, Elizabeth Pernicone, Henri Augusto Korkes, Suzanne D. Burke, Augustine Rajakumar, Ravi Thadhani, Drucilla J. Roberts, Manoj Bhasin, S. Ananth Karumanchi, Hernan D. Kopcow
Software Mentions: 3
Published: almost 10 years ago

10.1128/mBio.00454-19

Metabolic Model of the <i>Phytophthora infestans</i> -Tomato Interaction Reveals Metabolic Switches during Host Colonization
Cited by: 19
Author(s): Sander Y.A. Rodenburg, Michael Seidl, Howard S. Judelson, A. L. Vu, F. Govers, Dick de Ridder
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12920-020-0693-2

Potential role of genomic imprinted genes and brain developmental related genes in autism
Cited by: 8
Author(s): Jian Li, Xue Lü, Mingya Wang, Yunyun Hu, Kaiyu Xue, Shuanglin Gu, Lili Lv, Saijun Huang, Wei Xie
Software Mentions: 3
Published: over 6 years ago

10.1093/infdis/jix519

Host Transcription Profile in Nasal Epithelium and Whole Blood of Hospitalized Children Under 2 Years of Age With Respiratory Syncytial Virus Infection
Cited by: 28
Author(s): Lien Anh Ha, Johann Pellet, H. Rogier van Doorn, Anh Tuấn Trần, Bach Hue Nguyen, Thi Thu Loan Tran, Quynh Huong Tran, Quoc Bao Vo, Nguyen Anh Tran Dac, Hong Nhien Trinh, Thi Thanh Hai Nguyen, Bao Tinh Le Binh, Huu Mai Khanh Nguyen, Minh Tien Nguyen, Quang Tung Thai, Thanh Vu Vo, Ngoc Quang Minh Ngo, Thi Kim Huyen Dang, Ngoc Huong Cao, Thu Van Tran, Lu Viet Ho, Bertrand De Meulder, Charles Auffray, Jorrit–Jan H. Hofstra, Jeremy Farrar, Juliet E. Bryant, Menno D. de Jong, Martin L. Hibberd
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-021-96635-7

Multi-layered proteogenomic analysis unravels cancer metastasis directed by MMP-2 and focal adhesion kinase signaling
Cited by: 11
Author(s): Yumi Kwon, Seongjun Park, Binh Thanh Nguyen, Mi Jeong Kim, Sejin Oh, Hwanho Lee, Narae Park, Hyun‐Seok Kim, Min‐Jung Kang, Byung Soh Min, Jinwon Lee, Eun Gyeong Yang, Cheolju Lee
Software Mentions: 3
Published: almost 5 years ago