10.7554/eLife.36330

TFAP2 transcription factors are regulators of lipid droplet biogenesis
Cited by: 31
Author(s): Cameron C. Scott, Stefania Vossio, Jacques Rougemont, Jean Grüenberg
Software Mentions: 3
Published: about 7 years ago

10.7554/eLife.33070

Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice
Cited by: 67
Author(s): Roman M. Stilling, Gerard M. Moloney, Feargal J. Ryan, Alan E. Hoban, Thomaz F.S. Bastiaanssen, Fergus Shanahan, Gerard Clarke, Marcus J. Claesson, Timothy G. Dinan, John F. Cryan
Software Mentions: 3
Published: over 7 years ago

10.1186/s12885-017-3237-1

Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue
Cited by: 26
Author(s): Bojana Jovanović, Quanhu Sheng, Robert S. Seitz, Kasey Lawrence, Stephan W. Morris, Lance R. Thomas, David R. Hout, Brock L. Schweitzer, Yan Guo, Jennifer A. Pietenpol, Brian D. Lehmann
Software Mentions: 3
Published: over 8 years ago

10.1038/s42003-021-01946-0

Diapause vs. reproductive programs: transcriptional phenotypes in a keystone copepod
Cited by: 14
Author(s): Petra H. Lenz, Vittoria Roncalli, Matthew Cieslak, Ann M. Tarrant, Ann M. Castelfranco, Daniel K. Hartline
Software Mentions: 3
Published: over 4 years ago

10.1002/ctm2.138

Cell cycle progression score as a predictive biomarker for overall survival in patients with adrenocortical carcinoma
Cited by: 0
Author(s): Jing Sun, Run Shi, Felix Beuschlein, C. Belka, Minglun Li
Software Mentions: 3
Published: over 5 years ago

10.3390/metabo10080303

Metabolic Modelling as a Framework for Metabolomics Data Integration and Analysis
Cited by: 42
Author(s): Svetlana Volkova, Marta R. A. Matos, Matthias Mattanovich, Igor Marín de Mas
Software Mentions: 3
Published: over 5 years ago

10.1093/infdis/jix519

Host Transcription Profile in Nasal Epithelium and Whole Blood of Hospitalized Children Under 2 Years of Age With Respiratory Syncytial Virus Infection
Cited by: 28
Author(s): Lien Anh Ha, Johann Pellet, H. Rogier van Doorn, Anh Tuấn Trần, Bach Hue Nguyen, Thi Thu Loan Tran, Quynh Huong Tran, Quoc Bao Vo, Nguyen Anh Tran Dac, Hong Nhien Trinh, Thi Thanh Hai Nguyen, Bao Tinh Le Binh, Huu Mai Khanh Nguyen, Minh Tien Nguyen, Quang Tung Thai, Thanh Vu Vo, Ngoc Quang Minh Ngo, Thi Kim Huyen Dang, Ngoc Huong Cao, Thu Van Tran, Lu Viet Ho, Bertrand De Meulder, Charles Auffray, Jorrit–Jan H. Hofstra, Jeremy Farrar, Juliet E. Bryant, Menno D. de Jong, Martin L. Hibberd
Software Mentions: 3
Published: about 8 years ago

10.1186/s12915-020-00943-9

The hard clam genome reveals massive expansion and diversification of inhibitors of apoptosis in Bivalvia
Cited by: 45
Author(s): Hao Song, Ximing Guo, Lina Sun, Qianghui Wang, Fengming Han, Haiyan Wang, Gregory A. Wray, Phillip L. Davidson, Qing Wang, Zhi Hu, Cong Zhou, Zhi Yu, Mei‐Jie Yang, Jie Feng, Shi Pu, Yi Zhou, Libin Zhang, Tao Zhang
Software Mentions: 3
Published: almost 5 years ago

10.1002/cnm.2602

Novel wave intensity analysis of arterial pulse wave propagation accounting for peripheral reflections
Cited by: 40
Author(s): Jordi Alastruey, Anthony A. E. Hunt, Peter D. Weinberg
Software Mentions: 3
Published: about 12 years ago

10.1186/s13045-020-00854-w

Identification of cross-talk between m6A and 5mC regulators associated with onco-immunogenic features and prognosis across 33 cancer types
Cited by: 44
Author(s): Yutong Chen, Jiayi Shen, Dongping Chen, Chengdong Wu, Rui Guo, Panpan Zhang, Jiawei Lv, Wenfei Li, Zi‐Xian Wang, Yu-Pei Chen
Software Mentions: 3
Published: over 5 years ago

10.1186/s12883-020-01709-0

The prevalence of Restless Legs Syndrome/Willis-ekbom disease (RLS/WED) in the third trimester of pregnancy: a systematic review
Cited by: 18
Author(s): Niloofar Darvishi, Alireza Daneshkhah, Behnam Khaledi-Paveh, Asad Vaisi-Raygani, Masoud Mohammadi, Nader Salari, Fateme Darvishi, Alireza Abdi, Rostam Jalali
Software Mentions: 3
Published: over 5 years ago

10.3390/metabo5040794

Flux Balance Analysis Inspired Bioprocess Upgrading for Lycopene Production by a Metabolically Engineered Strain of Yarrowia lipolytica
Cited by: 28
Author(s): Komi Nambou, Xingxing Jian, Xinkai Zhang, Liujing Wei, Jiajia Lou, Catherine Madzak, Qiang Hua
Software Mentions: 3
Published: almost 10 years ago

10.3390/cells9071643

The E2F Pathway Score as a Predictive Biomarker of Response to Neoadjuvant Therapy in ER+/HER2− Breast Cancer
Cited by: 75
Author(s): Masanori Oshi, Hideo Takahashi, Yoshihisa Tokumaru, Li Yan, Omar M. Rashid, Masayuki Nagahashi, Ryusei Matsuyama, Itaru Endo, Kazuaki Takabe
Software Mentions: 3
Published: over 5 years ago

10.5402/2012/546721

Computerized Decision Support System for Intraoperative Analysis of Margin Status in Breast Conservation Therapy
Cited by: 3
Author(s): Manuel E. Ruidíaz, Sarah L. Blair, Andrew C. Kummel, Jessica Wang‐Rodriguez
Software Mentions: 3
Published: about 13 years ago

10.7150/ijbs.56152

MLKL inhibits intestinal tumorigenesis by suppressing STAT3 signaling pathway
Cited by: 11
Author(s): Qun Zhao, Xinran Cheng, Jian Guo, Yunbo Bi, Li Qing Kuang, Jianhua Ren, Jing Zhong, Longrui Pan, Xudong Zhang, Yang Guo, Yongqiang Liu, S. Jin, Yan Tan, Yu Lei
Software Mentions: 3
Published: almost 5 years ago

10.1111/cpr.12879

LncRNAs are regulated by chromatin states and affect the skeletal muscle cell differentiation
Cited by: 8
Author(s): Xiaolong Qi, Mingyang Hu, Yue Xiang, Daoyuan Wang, Yongming Xu, Ye Hou, Huanhuan Zhou, Yu Luan, Zhangxu Wang, Weiya Zhang, Xinyun Li, Zhao Song, Yi‐Fang Zhao
Software Mentions: 3
Published: over 5 years ago

10.1016/j.ymben.2017.11.011

Post-translational regulation of metabolism in fumarate hydratase deficient cancer cells
Cited by: 21
Author(s): Emanuel Gonçalvès, Marco Sciacovelli, Ana S.H. Costa, Maxine Tran, Timothy Isaac Johnson, Daniel Machado, Christian Frezza, Julio Sáez-Rodríguez
Software Mentions: 3
Published: almost 8 years ago

10.1038/celldisc.2016.41

NANOG reprograms prostate cancer cells to castration resistance via dynamically repressing and engaging the AR/FOXA1 signaling axis
Cited by: 40
Author(s): Collene Jeter, Bigang Liu, Yue Lu, Hsueh-Ping Chao, Dingxiao Zhang, Xin Liu, Xin Chen, Qiuhui Li, Kiera Rycaj, Tammy Calhoun-Davis, Li Yan, Qiang Hu, Jianmin Wang, Jianjun Shen, Song Liu, Dean G. Tang
Software Mentions: 3
Published: about 9 years ago

10.3390/md18090468

Optimization of Extraction of Bioactive Peptides from Monkfish (Lophius litulon) and Characterization of Their Role in H2O2-Induced Lesion
Cited by: 14
Author(s): Xiaoxiao Tian, Jiawen Zheng, Baogui Xu, Jiena Ye, Zuisu Yang, Yuan Fang
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-017-15221-y

Deconvolution of Transcriptional Networks in Post-Traumatic Stress Disorder Uncovers Master Regulators Driving Innate Immune System Function
Cited by: 12
Author(s): Abolfazl Doostparast Torshizi, Kai Wang
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-20232-4

Lnc2Catlas: an atlas of long noncoding RNAs associated with risk of cancers
Cited by: 25
Author(s): Chao Ren, Gaole An, Chenghui Zhao, Zhangyi Ouyang, Xiaochen Bo, Wenjie Shu
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-24978-9

Relationships between digestive efficiency and metabolomic profiles of serum and intestinal contents in chickens
Cited by: 20
Author(s): Stéphane Beauclercq, Lydie Nadal-Desbarats, Christelle Hennequet-Antier, Irène Gabriel, Sophie Tesseraud, Fanny Calenge, Elisabeth Le Bihan‐Duval, Sandrine Mignon-Grasteau
Software Mentions: 3
Published: over 7 years ago

10.3390/cells10061271

Nucleoporin TPR Affects C2C12 Myogenic Differentiation via Regulation of Myh4 Expression
Cited by: 3
Author(s): Jana Uhlířová, Lenka Šebestová, Karel Fišer, Tomáš Sieger, Jindřiška Fišerová, Pavel Hozák
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-017-07297-3

Desiccation tolerance in bryophytes: The dehydration and rehydration transcriptomes in the desiccation-tolerant bryophyte Bryum argenteum
Cited by: 37
Author(s): Bei Gao, Xiaoshuang Li, Daoyuan Zhang, Yuqing Liang, Yang Hong-yuan, Moxian Chen, Yuanming Zhang, Jianhua Zhang, Andrew J. Wood
Software Mentions: 3
Published: over 8 years ago

10.3390/cancers11121967

Pannexin1 Is Associated with Enhanced Epithelial-To-Mesenchymal Transition in Human Patient Breast Cancer Tissues and in Breast Cancer Cell Lines
Cited by: 25
Author(s): Nour Jalaleddine, Layal El-Hajjar, Hassan Dakik, Abdullah Shaito, Jessica Saliba, Rémi Safi, Kazem Zibara, Marwan El-Sabban
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12920-015-0141-x

Extensive alterations of the whole-blood transcriptome are associated with body mass index: results of an mRNA profiling study involving two large population-based cohorts
Cited by: 21
Author(s): Georg Homuth, Simone Wahl, Christian Müller, Claudia Schurmann, Ulrike Mäder, Stefan Blankenberg, Maren Carstensen, Marcus Dörr, Karlhans Endlich, Christian Englbrecht, Stephan B. Felix, Christian Gieger, Harald Grallert, Christian Herder, Thomas Illig, Jochen Kruppa, Carola Marzi, Julia Mayerle, Thomas Meitinger, Andres Metspalu, Matthias Nauck, Annette Peters, Wolfgang Rathmann, Eva Reinmaa, Rainer Rettig, Michael Roden, Arne Schillert, Katharina Schramm, Leif Steil, Konstantin Strauch, Alexander Teumer, Henry Völzke, Henri Wallaschofski, Philipp S. Wild, Andreas Ziegler, Uwe Völker, Holger Prokisch, Tanja Zeller
Software Mentions: 3
Published: about 10 years ago

10.1186/s12944-018-0767-8

Associations between three common single nucleotide polymorphisms (rs266729, rs2241766, and rs1501299) of ADIPOQ and cardiovascular disease: a meta-analysis
Cited by: 13
Author(s): Joseph Sam Kanu, Shuang Qiu, Cheng Yi, Ri Li, Changgui Kou, Yan Gu, Yang Bai, Jingwei Shi, Yong Li, Yunkai Liu, Yaqin Yu, Yawen Liu
Software Mentions: 3
Published: over 7 years ago

10.3390/cancers12061642

The Liver Microbiome Is Implicated in Cancer Prognosis and Modulated by Alcohol and Hepatitis B
Cited by: 13
Author(s): Jaideep Chakladar, Lauren Wong, Selena Z. Kuo, Wei Tse Li, Michael Yu, Eric Y. Chang, Xiao Qi Wang, Weg M. Ongkeko
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-017-11237-6

Distinct gut microbiome patterns associate with consensus molecular subtypes of colorectal cancer
Cited by: 162
Author(s): Rachel Purcell, Tina Visnovska, Patrick J. Biggs, Sebastian Schmeier, Frank Frizelle
Software Mentions: 3
Published: about 8 years ago

10.1186/s12920-020-00767-0

Unraveling the molecular heterogeneity in type 2 diabetes: a potential subtype discovery followed by metabolic modeling
Cited by: 7
Author(s): Maryam Khoshnejat, Kaveh Kavousi, Ali Mohammad Banaei-Moghaddam, Ali Akbar Moosavi-Movahedi
Software Mentions: 3
Published: over 5 years ago

10.1038/s41419-019-1835-3

The transcriptional landscape of lncRNAs reveals the oncogenic function of LINC00511 in ER-negative breast cancer
Cited by: 44
Author(s): Jian Zhang, Shiyao Sui, Hao Wu, Jinfeng Zhang, Xingda Zhang, Shouping Xu, Da Pang
Software Mentions: 3
Published: over 6 years ago

10.1155/2020/3126592

Identification of Heat-Responsive Genes in Guar [<i>Cyamopsis tetragonoloba</i> (L.) Taub]
Cited by: 8
Author(s): Aref Alshameri, Fahad Al‐Qurainy, Abdel-Rhman Z. Gaafar, Salim Khan, Mohammad Nadeem, Saleh Alansi
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2105-15-162

A multivariate approach to the integration of multi-omics datasets
Cited by: 214
Author(s): Chen Meng, Bernhard Küster, Aedín C. Culhane, Amin Moghaddas Gholami
Software Mentions: 3
Published: over 11 years ago

10.3390/cancers10080273

Functional Linkage of RKIP to the Epithelial to Mesenchymal Transition and Autophagy during the Development of Prostate Cancer
Cited by: 26
Author(s): Mahmoud Ahmed, Trang Huyen Lai, Sahib Zada, Jin Seok Hwang, Trang Minh Pham, Miyong Yun, Deok Ryong Kim
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-01468-y

Transcriptional landscape of epithelial and immune cell populations revealed through FACS-seq of healthy human skin
Cited by: 15
Author(s): Richard Ahn, Keyon Taravati, Kevin Lai, Kristina M. Lee, Joanne Nititham, Rashmi Gupta, David S. Chang, Sarah T. Arron, Michael D. Rosenblum, Wilson Liao
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-017-03121-0

Echo-Planar J-resolved Spectroscopic Imaging using Dual Read-outs: Implementation and Quantitation of Human Brain Metabolites
Cited by: 4
Author(s): Manoj K. Sarma, Rajakumar Nagarajan, Zohaib Iqbal, Paul M. Macey, M. Albert Thomas
Software Mentions: 3
Published: over 8 years ago

10.1186/s12920-020-0693-2

Potential role of genomic imprinted genes and brain developmental related genes in autism
Cited by: 8
Author(s): Jian Li, Xue Lü, Mingya Wang, Yunyun Hu, Kaiyu Xue, Shuanglin Gu, Lili Lv, Saijun Huang, Wei Xie
Software Mentions: 3
Published: over 5 years ago

10.1186/s40170-021-00272-7

Robust metabolic transcriptional components in 34,494 patient-derived cancer-related samples and cell lines
Cited by: 3
Author(s): Vincent Christiaan Leeuwenburgh, Carlos G. Urzúa-Traslaviña, Arkajyoti Bhattacharya, Marthe T. C. Walvoort, Mathilde Jalving, Steven de Jong, Rudolf S.N. Fehrmann
Software Mentions: 3
Published: about 4 years ago

10.1186/1755-8794-3-59

Birt-Hogg-Dubé renal tumors are genetically distinct from other renal neoplasias and are associated with up-regulation of mitochondrial gene expression
Cited by: 71
Author(s): Jeff Klomp, David Petillo, Natalie M. Niemi, Karl Dykema, Jindong Chen, Ximing J. Yang, Annika Sääf, Peter Zickert, Markus Aly, Ulf S.R. Bergerheim, Magnus Nordenskjöld, Sophie Gad, Sophie Giraud, Yves Denoux, Laurent Yonneau, A. Méjean, Viorel Vasiliu, Stéphane Richard, Jeffrey P. MacKeigan, Bin Tean Teh, Kyle A. Furge
Software Mentions: 3
Published: almost 15 years ago

10.1038/srep44849

Huntington’s disease blood and brain show a common gene expression pattern and share an immune signature with Alzheimer’s disease
Cited by: 39
Author(s): Davina J. Hensman Moss, Michael Flower, Kitty Lo, James R. C. Miller, G.J.B. van Ommen, Peter A.C. ’t Hoen, Timothy Stone, Amelia Guinee, Douglas R. Langbehn, Lesley Jones, Vincent Plagnol, Willeke M. C. van Roon‐Mom, Peter Holmans, Sarah J. Tabrizi
Software Mentions: 3
Published: over 8 years ago

10.3390/cancers13102452

Efficacy and Safety of Durvalumab Combined with Daratumumab in Daratumumab-Refractory Multiple Myeloma Patients
Cited by: 9
Author(s): Kristine A. Frerichs, Christie P.M. Verkleij, Meletios Α. Dimopoulos, Jhon A. Marin Soto, Sonja Zweegman, Mary Young, Kathryn J. Newhall, Tuna Mutis, Niels W.C.J. van de Donk
Software Mentions: 3
Published: over 4 years ago

10.1186/s12881-017-0393-8

Exome sequencing identified rare variants in genes HSPG2 and ATP2B4 in a family segregating developmental dysplasia of the hip
Cited by: 30
Author(s): Sulman Basit, Alia M. Albalawi, Essa Alharby, Khalid I. Khoshhal
Software Mentions: 3
Published: over 8 years ago

10.1038/srep12872

Geochemical influences and mercury methylation of a dental wastewater microbiome
Cited by: 17
Author(s): Asha Rani, Karl J. Rockne, James L. Drummond, Muntasar Al-Hinai, Ravi Ranjan
Software Mentions: 3
Published: over 10 years ago

10.1038/srep24964

Altered microRNA expression and pre-mRNA splicing events reveal new mechanisms associated with early stage Mycobacterium avium subspecies paratuberculosis infection
Cited by: 34
Author(s): Guanxiang Liang, Nilusha Malmuthuge, Yongjuan Guan, Yan Ren, Philip Griebel, Le Luo Guan
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0177819

Network architecture associated with the highly specialized hindlimb of frogs
Cited by: 17
Author(s): Daniel Andrés Dos Santos, Jéssica Fratani, María Laura Ponssa, Virginia Abdala
Software Mentions: 3
Published: over 8 years ago

10.1186/1471-2105-14-212

Linear combination test for gene set analysis of a continuous phenotype
Cited by: 8
Author(s): Irina Dinu, Xiaoming Wang, Linda E. Kelemen, Shabnam Vatanpour, Saumyadipta Pyne
Software Mentions: 3
Published: over 12 years ago

10.1186/s12977-016-0248-y

TLR8 regulation of LILRA3 in monocytes is abrogated in human immunodeficiency virus infection and correlates to CD4 counts and virus loads
Cited by: 8
Author(s): Hui Zhi Low, Gerrit Ahrenstorf, Claudia Pommerenke, Nadine Habermann, Klaus Schughart, David Ordóñez, Renata Stripecke, Esther Wilk, Torsten Witte
Software Mentions: 3
Published: over 9 years ago

10.1186/s12916-015-0282-y

Multi-omic signature of body weight change: results from a population-based cohort study
Cited by: 58
Author(s): Simone Wahl, Susanne Vogt, Ferdinand Stückler, Jan Krumsiek, Jörg Bartel, Tim Kacprowski, Katharina Schramm, Maren Carstensen, Wolfgang Rathmann, Michael Roden, Carolin Jourdan, Antti J. Kangas, Pasi Soininen, Mika Ala‐Korpela, Ute Nöthlings, Heiner Boeing, Fabian J. Theis, Christa Meisinger, Mélanie Waldenberger, Karsten Suhre, Georg Homuth, Christian Gieger, Gabi Kastenmüller, Thomas Illig, Jakob Linseisen, Annette Peters, Holger Prokisch, Christian Herder, Barbara Thorand, Harald Grallert
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0203275

Genetic diversity and biogeography of T. officinale inferred from multi locus sequence typing approach
Cited by: 3
Author(s): Mahdi Jafari, Waheed Akram, Yanju Pang, Aqeel Ahmad, Shakeel Ahmed, Nasim Ahmad Yasin, Tehmina Anjum, Basharat Ali, Xiangdong Hu, Xiaohua Li, Shuang-Lin Dong, Qian Cai, Matteo Ciprian, Monika Bielec, Sheng Hu, Fatemeh Sefidkon, Xuebo Hu
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0037108

Extensive Gene-Specific Translational Reprogramming in a Model of B Cell Differentiation and Abl-Dependent Transformation
Cited by: 10
Author(s): Jamie Bates, Julia Salzman, Damon May, Patty B. Garcia, Gregory J. Hogan, Martin W. McIntosh, Mark S. Schlissel, Pat Brown
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0224477

Are we ready for scaling up restoration actions? An insight from Mediterranean macroalgal canopies
Cited by: 21
Author(s): Laura Tamburello, Loredana Papa, Giuseppe Guarnieri, Laura Basconi, Serena Zampardi, Maria Beatrice Scipione, Antonio Terlizzi, Valerio Zupo, Simonetta Fraschetti
Software Mentions: 3
Published: about 6 years ago

10.1186/1742-4690-8-18

Genome-wide analysis of primary CD4+ and CD8+ T cell transcriptomes shows evidence for a network of enriched pathways associated with HIV disease
Cited by: 53
Author(s): Jing Qin Wu, Dominic E. Dwyer, Wayne B. Dyer, Jean Yee Hwa Yang, Binbin Wang, Nitin K. Saksena
Software Mentions: 3
Published: over 14 years ago

10.1186/s12935-020-01587-z

Identified IGSF9 association with prognosis and hypoxia in nasopharyngeal carcinoma by bioinformatics analysis
Cited by: 6
Author(s): Danxia Huang, Qianqian Liu, Weijun Zhang, Chunyue Huang, Ronghui Zheng, Gaoqiang Xie, Hongmei Wang, Baochang Jia, Jianjun Shi, Yawei Yuan, Min Deng
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0217105

Identification of key modules and hub genes for small-cell lung carcinoma and large-cell neuroendocrine lung carcinoma by weighted gene co-expression network analysis of clinical tissue-proteomes
Cited by: 21
Author(s): Hiroki Nakamura, Kiyonaga Fujii, Vipul Gupta, Hiroko Hata, Hirotaka Koizumu, Masahiro Hoshikawa, Saeko Naruki, Yuka Miyata, Ikuya Takahashi, Tomoki Miyazawa, Hiroki Sakai, Kouhei Tsumoto, Masayuki Takagi, Hisashi Saji, Toshihide Nishimura
Software Mentions: 3
Published: over 6 years ago

10.1186/s12931-019-0995-0

Identification of differentially expressed proteins in the injured lung from zinc chloride smoke inhalation based on proteomics analysis
Cited by: 13
Author(s): Xiaowei Xie, Jiemin Zhao, Lei Xie, Haiyan Wang, Yan Xiao, Yingjia She, Lingyun Ma
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-017-07015-z

Biochemical profiling of diabetes disease progression by multivariate vibrational microspectroscopy of the pancreas
Cited by: 9
Author(s): Christoffer Nord, Maria Eriksson, Andrea Dicker, Anna Eriksson, Eivind Grong, Erwin Ilegems, Ronald Mårvik, Bård Kulseng, Per Olof Berggren, András Gorzsás, Ulf Ahlgren
Software Mentions: 3
Published: over 8 years ago

10.1186/s10194-017-0817-z

11th European Headache Federation Congress jointly with 31st Congress of the Italian Society for the Study of Headaches
Cited by: 6
Author(s): Brigida Fierro, Giuseppe Cosentino, Salvatore Cillino, Filippo Brighina, Viviana Firpo
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0249593

Identifying geographically differentiated features of Ethopian Nile tilapia (Oreochromis niloticus) morphology with machine learning
Cited by: 3
Author(s): Wilfried Wöber, Manuel Curto, Papius Dias Tibihika, Paul Meulenbroek, Esayas Alemayehu, Lars Mehnen, Harald Meimberg, Peter Sykacek
Software Mentions: 3
Published: over 4 years ago

10.1016/j.ccell.2018.08.015

The Oncogenic Transcription Factor RUNX1/ETO Corrupts Cell Cycle Regulation to Drive Leukemic Transformation
Cited by: 75
Author(s): N Martinez-Soria, Lynsey McKenzie, Julia Draper, Anetta Ptasińska, Hasan Issa, Sandeep Potluri, Helen J. Blair, Anna Pickin, Asmida Isa, Paulynn Suyin Chin, Ricky Tirtakusuma, Dan Coleman, Sirintra Nakjang, Salam A. Assi, Victoria J. Forster, Mojgan Reza, Edward Law, Philip Berry, Dorothée Mueller, Cameron S. Osborne, Alex Elder, Simon Bomken, Deepali Pal, James M. Allan, Gareth J. Veal, Peter N. Cockerill, Christian Wichmann, Josef Vormoor, Georges Lacaud, Constanze Bonifer, Olaf Heidenreich
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.ppat.1004869

Host Transcriptional Response to Influenza and Other Acute Respiratory Viral Infections – A Prospective Cohort Study
Cited by: 108
Author(s): Yijie Zhai, Luis M. Franco, Robert L. Atmar, John Quarles, Nancy H. Arden, Kristine L. Bucasas, Janet Wells, Diane Niño, Xueqing Wang, Gladys Zapata, Chad A. Shaw, John W. Belmont, Robert B. Couch
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.ppat.1007950

Equine arteritis virus long-term persistence is orchestrated by CD8+ T lymphocyte transcription factors, inhibitory receptors, and the CXCL16/CXCR6 axis
Cited by: 19
Author(s): Mariano Carossino, Pouya Dini, Theodore S. Kalbfleisch, Alan T. Loynachan, Igor F. Canisso, R. Frank Cook, Peter J. Timoney, Udeni B. R. Balasuriya
Software Mentions: 3
Published: over 6 years ago

10.1002/psp4.12091

Model-Based Network Meta-Analysis: A Framework for Evidence Synthesis of Clinical Trial Data
Cited by: 48
Author(s): David Mawdsley, Meg Bennetts, Sofia Dias, Martin Boucher, Nicky J Welton
Software Mentions: 3
Published: over 9 years ago

10.1111/cns.13254

High expression of <i>COPB2</i> predicts adverse outcomes: A potential therapeutic target for glioma
Cited by: 13
Author(s): Yan Zhou, Xuan Wang, Xing Huang, Xu‐Dong Li, Kai Chen, Hao Yu, Yujie Zhou, Ping Lv, Xiao Jiang
Software Mentions: 3
Published: about 6 years ago

10.1111/cns.13380

Molecular and clinical characterization of PARP9 in gliomas: A potential immunotherapeutic target
Cited by: 13
Author(s): Hao Xu, Songshan Chai, Yihao Wang, Jiajing Wang, Dongdong Xiao, Junjun Li, Nanxiang Xiong
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0231771

Phytoplankton transcriptomic and physiological responses to fixed nitrogen in the California current system
Cited by: 3
Author(s): Irina N. Shilova, Jonathan D. Magasin, Matthew M. Mills, Julie Robidart, Kendra A. Turk‐Kubo, Jonathan P. Zehr
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-020-07156-y

Whole genome analysis of the koa wilt pathogen (Fusarium oxysporum f. sp. koae) and the development of molecular tools for early detection and monitoring
Cited by: 9
Author(s): Joe Dobbs, Mee‐Sook Kim, Nicklos S. Dudley, Ned B. Klopfenstein, Aileen Yeh, Robert D. Hauff, Tyler Jones, R. Kasten Dumroese, Philip Cannon, Jane E. Stewart
Software Mentions: 3
Published: about 5 years ago

10.18632/aging.202493

Identification of hub genes associated with adult acute myeloid leukemia progression through weighted gene co-expression network analysis
Cited by: 4
Author(s): Ruiqi Zhu, Wenyi Lin, Liang Tang, Yu Hu
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-019-6055-9

Dynamics of transcriptome changes during subcutaneous preadipocyte differentiation in ducks
Cited by: 9
Author(s): Zheng Wang, Zhong-Tao Yin, Fan Zhang, Xiao-qin Li, Si-Rui Chen, Ning Yang, Tom E. Porter, Zhuocheng Hou
Software Mentions: 3
Published: about 6 years ago

10.1590/1414-431X20198333

Screening potential prognostic biomarkers of long non-coding RNAs for predicting the risk of chronic kidney disease
Cited by: 11
Author(s): Na Li, Yan Cui, Min Yin, Feng Liu
Software Mentions: 3
Published: almost 7 years ago

10.1111/jcmm.15193

To construct a ceRNA regulatory network as prognostic biomarkers for bladder cancer
Cited by: 45
Author(s): Jiazhi Jiang, Yaqiong Bi, Xiaoping Li, Donghu Yu, Xin Yan, Jie Yao, Tongzu Liu, Li Sheng
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2105-12-315

Link-based quantitative methods to identify differentially coexpressed genes and gene Pairs
Cited by: 83
Author(s): Hui Yu, Baohong Liu, Zhiqiang Ye, Chun Liang, Yixue Li, Yuanyuan Li
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pone.0257254

Knocking out TMEM38B in human foetal osteoblasts hFOB 1.19 by CRISPR/Cas9: A model for recessive OI type XIV
Cited by: 4
Author(s): Laura Leoni, Francesca Tonelli, Roberta Besio, Roberta Gioia, Francesco Moccia, Antonio Rossi, Antonella Forlino
Software Mentions: 3
Published: about 4 years ago

10.7150/jca.51591

Increased Expression of <i>KNSTRN</i> in Lung Adenocarcinoma Predicts Poor Prognosis: A Bioinformatics Analysis Based on TCGA Data
Cited by: 11
Author(s): Pengbo Deng, Rongrong Zhou, Jinghui Zhang, Liming Cao
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0219486

Caenorhabditis elegans hub genes that respond to amyloid beta are homologs of genes involved in human Alzheimer’s disease
Cited by: 14
Author(s): Rasoul Godini, Roger Pocock, Hossein Fallahi
Software Mentions: 3
Published: over 6 years ago

10.7150/jca.52170

Five-gene signature associating with Gleason score serve as novel biomarkers for identifying early recurring events and contributing to early diagnosis for Prostate Adenocarcinoma
Cited by: 10
Author(s): Lingyu Zhang, Li Yu, Xuchu Wang, Ying Ping, Danhua Wang, Ying Cao, Yibei Dai, Weiwei Liu, Zhihua Tao
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0022295

Randomizing Genome-Scale Metabolic Networks
Cited by: 16
Author(s): Areejit Samal, O. C. Martin
Software Mentions: 3
Published: over 14 years ago

10.7150/jca.45553

The <i>miR-370</i>/UQCRC2 axis facilitates tumorigenesis by regulating epithelial-mesenchymal transition in Gastric Cancer
Cited by: 11
Author(s): Danwen Wang, Fei Su, Tao Zhang, Tiecheng Yang, Huaqiao Wang, Lei Yang, Fenfang Zhou, Feng Mao
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0138204

A Systematic Review and Meta-Analysis of the Efficacy of Anti-Toxoplasma gondii Medicines in Humans
Cited by: 90
Author(s): Haixia Wei, Shanshan Wei, David S. Lindsay, Hong‐Juan Peng
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0164353

Induced Human Decidual NK-Like Cells Improve Utero-Placental Perfusion in Mice
Cited by: 20
Author(s): Ricardo de Carvalho Cavalli, Ana Sofia Cerdeira, Elizabeth Pernicone, Henri Augusto Korkes, Suzanne D. Burke, Augustine Rajakumar, Ravi Thadhani, Drucilla J. Roberts, Manoj Bhasin, S. Ananth Karumanchi, Hernan D. Kopcow
Software Mentions: 3
Published: about 9 years ago

10.1111/jcmm.13997

ce-Subpathway: Identification of ceRNA-mediated subpathways via joint power of ceRNAs and pathway topologies
Cited by: 9
Author(s): Chenchen Feng, Chao Song, Ziyu Ning, Bo Ai, Qiuyu Wang, Yong Xu, Meng Li, Xuefeng Bai, Jian Zhao, Yuejuan Liu, Xuecang Li, Jian Zhang, Chunquan Li
Software Mentions: 3
Published: about 7 years ago

10.1038/s41438-020-0287-3

Transcriptome analysis and metabolic profiling reveal the key role of carotenoids in the petal coloration of Liriodendron tulipifera
Cited by: 39
Author(s): Zhaodong Hao, Siqin Liu, Lingfeng Hu, Jisen Shi, Jinhui Chen
Software Mentions: 3
Published: over 5 years ago

10.1038/s41438-020-0249-9

Application of an antibody chip for screening differentially expressed proteins during peach ripening and identification of a metabolon in the SAM cycle to generate a peach ethylene biosynthesis model
Cited by: 10
Author(s): Wenfang Zeng, Liang Niu, Zhaohui Wang, Xiaobei Wang, Yan Wang, Lei Pan, Zhenhua Lü, Guochao Cui, Weining Weng, Mingqiao Wang, Xianghong Meng, Zhiqiang Wang
Software Mentions: 3
Published: over 5 years ago

10.1016/j.csbj.2020.04.011

Multi-omics systems toxicology study of mouse lung assessing the effects of aerosols from two heat-not-burn tobacco products and cigarette smoke
Cited by: 21
Author(s): Bjoern Titz, Justyna Szostak, Alain Sewer, Blaine Phillips, Catherine Nury, Thomas Schneider, Sophie Dijon, Oksana Lavrynenko, Ashraf Elamin, Emmanuel Guedj, Ee Tsin Wong, Stefan Lebrun, Grégory Vuillaume, Athanasios Kondylis, Sylvain Gubian, Stéphane Cano, Patrice Leroy, Brian Keppler, Nikolai V. Ivanov, Patrick Vanscheeuwijck, Florian Martin, Manuel C. Peitsch, Julia Hoeng
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13068-021-02032-7

Genome-wide association study and transcriptome analysis reveal key genes affecting root growth dynamics in rapeseed
Cited by: 17
Author(s): Keqi Li, Jie Wang, Lieqiong Kuang, Ze Tian, Xinfa Wang, Xiaoling Dun, Jinxing Tu, Hanzhong Wang
Software Mentions: 3
Published: about 4 years ago

10.1186/s41065-021-00183-z

RTP4 is a novel prognosis-related hub gene in cutaneous melanoma
Cited by: 7
Author(s): Yiqi Li, Jue Qi, Jiankang Yang
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0067922

Roles for Treg Expansion and HMGB1 Signaling through the TLR1-2-6 Axis in Determining the Magnitude of the Antigen-Specific Immune Response to MVA85A
Cited by: 26
Author(s): Magali Matsumiya, Elena Stylianou, Kristin Griffiths, Zoe Lang, Joel N. Meyer, Stephanie A. Harris, Rosalind Rowland, Angela M. Minassian, Ansar A. Pathan, Helen A. Fletcher, Helen McShane
Software Mentions: 3
Published: over 12 years ago

10.1186/s41065-019-0096-6

Identification of five hub genes as monitoring biomarkers for breast cancer metastasis in silico
Cited by: 45
Author(s): Yun Cai, Jie Mei, Zhuang Xiao, Bujie Xu, Xiaozheng Jiang, Yongjie Zhang, Yichao Zhu
Software Mentions: 3
Published: over 6 years ago

10.1016/j.dib.2021.106730

Gaze tracking dataset for comparison of smooth and saccadic eye tracking
Cited by: 2
Author(s): Adam Pantanowitz, Kimoon Kim, Chelsey Chewins, David M. Rubin
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.dib.2017.10.014

Waste management CDM projects barriers NVivo 10® qualitative dataset
Cited by: 5
Author(s): André Luiz Bufoni, Aracéli Cristina de Sousa Ferreira, Luciano Basto Oliveira
Software Mentions: 3
Published: almost 8 years ago

10.3390/ht8010004

A Selective Review of Multi-Level Omics Data Integration Using Variable Selection
Cited by: 127
Author(s): Cen Wu, Fei Zhou, Jie Ren, Xiaoxi Li, Yu Jiang, Shuangge Ma
Software Mentions: 3
Published: almost 7 years ago

10.1172/jci.insight.97011

Peripheral tissues reprogram CD8+ T cells for pathogenicity during graft-versus-host disease
Cited by: 19
Author(s): Pedro M. Sousa, Séverine Cire, Thomas Conlan, Laura Jardine, Claire Tkacz, Ivana R. Ferrer, C Lomas, Sophie Ward, Heather C. West, Simone Dertschnig, Sven Blobner, Terry K. Means, Stephen Henderson, Daniel H. Kaplan, Matthew Collin, Vincent Plagnol, Clare Bennett, Ronjon Chakraverty
Software Mentions: 3
Published: over 7 years ago

10.1093/gigascience/giz138

Pseudo-chromosome–length genome assembly of a double haploid “Bartlett” pear (Pyrus communis L.)
Cited by: 64
Author(s): Gareth Linsmith, Stéphane Rombauts, Sara Montanari, Cecilia Deng, Jean‐Marc Celton, Philippe Guérif, Chang Liu, Rolf Lohaus, Jason D. Zurn, Alessandro Cestaro, Nahla V. Bassil, Linda V. Bakker, Elio Schijlen, Susan E. Gardiner, Yves Lespinasse, Charles‐Eric Durel, Riccardo Velasco, David B. Neale, David Chagné, Yves Van de Peer, Michela Troggio, Luca Bianco
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12919-021-00223-6

Proceedings of ‘FETP-ICON 2020’ Conference
Cited by: 0
Author(s):
Software Mentions: 3
Published: over 4 years ago

10.1042/BSR20200514

Identification of co-expressed genes associated with <i>MLL</i> rearrangement in pediatric acute lymphoblastic leukemia
Cited by: 2
Author(s): Hao Zhang, Bei Liu, Juan Cheng, Haizhen Ma, Zijian Li, Yuandi Xi
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2105-9-203

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
Cited by: 39
Author(s): Yuji Zhang, Jianhua Xuan, Benildo G. de los Reyes, Robert Clarke, Habtom W. Ressom
Software Mentions: 3
Published: over 17 years ago

10.1371/journal.pone.0094031

Disruption of the Homogentisate Solanesyltransferase Gene Results in Albino and Dwarf Phenotypes and Root, Trichome and Stomata Defects in Arabidopsis thaliana
Cited by: 12
Author(s): Yuehui Chao, Junmei Kang, Tiejun Zhang, Qingchuan Yang, Margaret Y. Gruber, Yan Sun
Software Mentions: 3
Published: over 11 years ago

10.1186/1476-4598-13-27

RNAi-mediated silencing of MLL-AF9 reveals leukemia-associated downstream targets and processes
Cited by: 29
Author(s): Katrin K. Fleischmann, Philipp Pagel, Irene Schmid, Adelbert A. Roscher
Software Mentions: 3
Published: almost 12 years ago

10.1136/gutjnl-2019-320430

Western-type diet influences mortality from necrotising pancreatitis and demonstrates a central role for butyrate
Cited by: 57
Author(s): Fons F van den Berg, Demi van Dalen, Sanjiv Hyoju, Hjalmar C. van Santvoort, Marc G. Besselink, W. Joost Wiersinga, Olga Zaborina, Marja A. Boermeester, John C. Alverdy
Software Mentions: 3
Published: about 5 years ago

10.1172/jci.insight.145928

Chronic HIV infection induces transcriptional and functional reprogramming of innate immune cells
Cited by: 29
Author(s): Wouter A van der Heijden, Lisa Van de Wijer, Farid Keramati, Wim Trypsteen, Sofie Rutsaert, Rob ter Horst, Martin Jaeger, Hans J. P. M. Koenen, Hendrik G. Stunnenberg, Irma Joosten, Paul E. Verweij, Jan van Lunzen, Charles A. Dinarello, Linos Vandekerckhove, Mihai G. Netea, A.J.A.M. van der Ven, Quirijn de Mast
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0070429

Identification and Validation of a Multigene Predictor of Recurrence in Primary Laryngeal Cancer
Cited by: 39
Author(s): Elena Fountzilas, Vassiliki Kotoula, Nikolaos Angouridakis, Ilias Karasmanis, Ralph M. Wirtz, Anastasia G Eleftheraki, Elke Veltrup, Konstantinos Markou, Angelos Nikolaou, Dimitrios Pectasides, George Fountzilas
Software Mentions: 3
Published: over 12 years ago