10.1371/journal.pone.0195978

ST waveform analysis for monitoring hypoxic distress in fetal sheep after prolonged umbilical cord occlusion
Cited by: 5
Author(s): Peter Andriessen, Alex Zwanenburg, Judith O E H van Laar, Rik Vullings, Ben J. M. Hermans, Hendrik J. Niemarkt, Reint K. Jellema, Daan Ophelders, Tim G. A. M. Wolfs, Boris W. Kramer, Tammo Delhaas
Software Mentions: 4
Published: over 8 years ago

10.3389/fimmu.2021.716075

Transcriptome Analysis of Peripheral Blood Mononuclear Cells Reveals Distinct Immune Response in Asymptomatic and Re-Detectable Positive COVID-19 Patients
Cited by: 10
Author(s): Jiaqi Zhang, Dan Lin, Kui Li, Xiangming Ding, Lin Li, Yuntao Liu, Dongdong Liu, Jing Lin, Xiangyun Teng, Yizhe Li, Ming Liu, Jian Shen, Xiaodan Wang, He Dan, Yawei Shi, Dawei Wang, Jianhua Xu
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2021.636108

Impact of Tenascin-C on Radiotherapy in a Novel Syngeneic Oral Squamous Cell Carcinoma Model With Spontaneous Dissemination to the Lymph Nodes
Cited by: 5
Author(s): Caroline Spenlé, Thomas Loustau, Hélène Burckel, Gilles Riegel, Chérine Abou Faycal, Chengbei Li, Alev Yılmaz, Luciana Petti, Fanny Steinbach, Constance Ahowesso, Camille Jost, Nicodème Paul, Raphaël Carapito, Georges Noël, Fabienne Anjuère, Nathalie Salomé, Gertraud Orend
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2020.01228

Targeting Nuclear LSD1 to Reprogram Cancer Cells and Reinvigorate Exhausted T Cells via a Novel LSD1-EOMES Switch
Cited by: 30
Author(s): Wen Juan Tu, Robert McCuaig, Abel Tan, Kristine Hardy, Nabila Seddiki, Sayed Ali, Jane E. Dahlstrom, Elaine Bean, Jenny C. Dunn, Jade K. Forwood, S. Tsimbalyuk, Kate Smith, Desmond Yip, Laeeq Malik, Thiru Prasanna, Peter J. Milburn, Sudha Rao
Software Mentions: 4
Published: over 6 years ago

10.1128/mSystems.00070-17

Abiotic Stresses Shift Belowground <i>Populus</i> -Associated Bacteria Toward a Core Stress Microbiome
Cited by: 75
Author(s): Collin M. Timm, Kelsey Carter, Alyssa A. Carrell, Se‐Ran Jun, Sara Jawdy, Jessica M. Vélez, Lee E. Gunter, Zamin K. Yang, Intawat Nookaew, Nancy L. Engle, Tse-Yuan S. Lu, Christopher W. Schadt, Timothy J. Tschaplinski, Mitchel J. Doktycz, Gerald A. Tuskan, Dale A. Pelletier, David J. Weston
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-017-08796-z

Surface PD-L1, E-cadherin, CD24, and VEGFR2 as markers of epithelial cancer stem cells associated with rapid tumorigenesis
Cited by: 42
Author(s): Goodwin G. Jinesh, Ganiraju C. Manyam, Chinedu O. Mmeje, Keith A. Baggerly, Ashish M. Kamat
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0255915

Reciprocal interplay between asporin and decorin: Implications in gastric cancer prognosis
Cited by: 6
Author(s): Dipjit Basak, Zarqua Jamal, Arnab Ghosh, Pronoy Kanti Mondal, Priyanka Dey Talukdar, Semanti Ghosh, Biswadeep Ghosh Roy, Ranajoy Ghosh, Ajay Halder, Abhijit Chowdhury, Gopal Krishna Dhali, Brajadulal Chattopadhyay, Makhan Saha, Abhimanyu Basu, Sukanta Roy, Chitranjan Mukherjee, Nidhan K. Biswas, Urmi Chatterji, Shalini Datta
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-017-05724-z

Comprehensive transcriptomics and proteomics analyses of pollinated and parthenocarpic litchi (Litchi chinensis Sonn.) fruits during early development
Cited by: 14
Author(s): Wei Liu, Maoshan Chen, Lijun Bai, Zhenhua Zhuang, Chao Fan, Jiang Nong-hui, Junsheng Zhao, Shuaipeng Ma, Xiang Xu
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-017-04300-9

Altered miRNA expression network in locus coeruleus of depressed suicide subjects
Cited by: 59
Author(s): Bhaskar Roy, Qingzhong Wang, M. Palkóvits, Gábor Faludi, Yogesh K. Dwivedi
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0154836

Alteration of Gene Expression, DNA Methylation, and Histone Methylation in Free Radical Scavenging Networks in Adult Mouse Hippocampus following Fetal Alcohol Exposure
Cited by: 44
Author(s): Eric Chater‐Diehl, Benjamin I. Laufer, Christina A Castellani, Bonnie Alberry, Shiva M. Singh
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0056228

canEvolve: A Web Portal for Integrative Oncogenomics
Cited by: 39
Author(s): Mehmet K. Samur, Zhenyu Yan, Xujun Wang, Qingyi Cao, Nikhil C. Munshi, Li Cheng, Parantu K. Shah
Software Mentions: 4
Published: over 13 years ago

10.1038/srep12615

Decrease of mRNA Editing after Spinal Cord Injury is Caused by Down-regulation of ADAR2 that is Triggered by Inflammatory Response
Cited by: 27
Author(s): Antonio Fabio Di Narzo, Alexey Kozlenkov, Yongchao Ge, Bin Zhang, Leo Sanelli, Zacnicte May, Yanqing Li, Karim Fouad, Christopher P. Cardozo, Eugene V. Koonin, David J. Bennett, Stella Dracheva
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0032453

Astrocyte-Specific Expression Patterns Associated with the PDGF-Induced Glioma Microenvironment
Cited by: 66
Author(s): Amanda Katz, Nduka Amankulor, Kenneth L. Pitter, Karim Y. Helmy, Massimo Squatrito, Eric C. Holland
Software Mentions: 4
Published: over 14 years ago

10.1371/journal.pone.0252647

Co-expression analysis identifies neuro-inflammation as a driver of sensory neuron aging in Aplysia californica
Cited by: 2
Author(s): Nicholas S. Kron, Lynne A. Fieber
Software Mentions: 4
Published: over 5 years ago

10.1038/srep09027

Genome wide expression profiling of p53 regulated miRNAs in neuroblastoma
Cited by: 28
Author(s): Ali Rihani, Alan Van Goethem, Maté Ongenaert, Sara De Brouwer, Pieter-Jan Volders, Saurabh Agarwal, Katleen De Preter, Pieter Mestdagh, Jason M. Shohet, Franki Speleman, Jo Vandesompele, Tom Van Maerken
Software Mentions: 4
Published: over 11 years ago

10.1186/s12931-020-01368-2

IRF4 and STAT3 activities are associated with the imbalanced differentiation of T-cells in responses to inhalable particulate matters
Cited by: 2
Author(s): Jinzhun Wu, Dongyu Ge, Taoling Zhong, Zuojia Chen, Ying Zhou, Lingyun Hou, Xinhua Lin, Jiaxu Hong, Kuai Liu, Hui Qi, Chaoying Wang, Yulin Zhou, Cheng Li, Chuan Wu, Shi Wu, Zuguo Liu, Qiyuan Li
Software Mentions: 4
Published: over 6 years ago

10.1186/s12931-016-0496-3

Whole Transcriptome Analysis of Pre-invasive and Invasive Early Squamous Lung Carcinoma in Archival Laser Microdissected Samples
Cited by: 5
Author(s): Andre Koper, Leo Zeef, Leena Dennis Joseph, Keith M. Kerr, John R. Gosney, Mark A. Lindsay, Richard Booton
Software Mentions: 4
Published: almost 10 years ago

10.1002/reg2.48

Genome‐wide analysis reveals conserved transcriptional responses downstream of resting potential change in<i>Xenopus</i>embryos, axolotl regeneration, and human mesenchymal cell differentiation
Cited by: 51
Author(s): Vaibhav P. Pai, Christopher J. Martyniuk, Karen Echeverri, Sarah Sundelacruz, David L. Kaplan, Michael Levin
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0036161

Effect of Age on Variability in the Production of Text-Based Global Inferences
Cited by: 9
Author(s): Lynne J. Williams, Joseph Dunlop, Hervé Abdi
Software Mentions: 4
Published: over 14 years ago

10.3389/fcell.2020.558961

Identification of Prognostic Model and Biomarkers for Cancer Stem Cell Characteristics in Glioblastoma by Network Analysis of Multi-Omics Data and Stemness Indices
Cited by: 27
Author(s): Jianyang Du, Xiuwei Yan, Shan Mi, Yuan Li, Hang Ji, Kezuo Hou, Shuai Ma, Yixu Ba, Peng Zhou, Lei Chen, Rui Xie, Shaoshan Hu
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.ppat.1009789

Pulmonary mesenchymal stem cells are engaged in distinct steps of host response to respiratory syncytial virus infection
Cited by: 5
Author(s): Melanie Brügger, Thomas Démoulins, G. Tuba Barut, Béatrice Zumkehr, Blandina I. Oliveira Esteves, Kemal Mehinagic, Quentin Haas, Aline Schögler, Marie‐Anne Rameix‐Welti, Jean François Eléouët, Ueli Moehrlen, Thomas Marti, Ralph A. Schmid, Artur Summerfield, Horst Posthaus, Nicolas Ruggli, Sean Hall, Marco P. Alves
Software Mentions: 4
Published: over 5 years ago

10.1038/onc.2016.242

microRNAs with AAGUGC seed motif constitute an integral part of an oncogenic signaling network
Cited by: 16
Author(s): Yan Zhou, Oliver Frings, Rui M. Branca, Jorrit Boekel, Carlos le Sage, Erik Fredlund, Reuven Agami, Lukas M. Orre
Software Mentions: 4
Published: about 10 years ago

10.3389/fcell.2021.710558

Construction and Validation of a Novel Immunosignature for Overall Survival in Uveal Melanoma
Cited by: 3
Author(s): Chufeng Gu, Xiaohong Gu, Yujie Wang, Zhixian Yao, Chuandi Zhou
Software Mentions: 4
Published: about 5 years ago

10.3390/jcm10112259

Learning from Embryogenesis—A Comparative Expression Analysis in Melanoblast Differentiation and Tumorigenesis Reveals miRNAs Driving Melanoma Development
Cited by: 4
Author(s): Lisa Linck-Paulus, Lisa Lämmerhirt, Daniel Völler, Katharina Meyer, Julia C. Engelmann, Rainer Spang, Norbert Eichner, Gunter Meister, Silke Kuphal, Anja‐Katrin Bosserhoff
Software Mentions: 4
Published: over 5 years ago

10.3389/fendo.2021.705154

Weighted Gene Co-Expression Network Analysis Identifies ANGPTL4 as a Key Regulator in Diabetic Cardiomyopathy via FAK/SIRT3/ROS Pathway in Cardiomyocyte
Cited by: 8
Author(s): Lei Dai, Yang Xie, Wenjun Zhang, Xiaodan Zhong, Mengwen Wang, Hongchen Jiang, Zhen He, Xiaolei Liu, Hesong Zeng, Hongjie Wang
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2021.630215

Comparing Statistical Tests for Differential Network Analysis of Gene Modules
Cited by: 2
Author(s): Jaron Arbet, Yaxu Zhuang, Elizabeth Litkowski, Laura Saba, Katerina Kechris
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.46981

Transcriptional landscape of myogenesis from human pluripotent stem cells reveals a key role of TWIST1 in maintenance of skeletal muscle progenitors
Cited by: 27
Author(s): In Young Choi, Hotae Lim, Hyeon Jin Cho, Yohan Oh, Bin Kuan Chou, Hao Bai, Linzhao Cheng, Yong Jun Kim, Sang‐Hwan Hyun, Hyesoo Kim, Joo Heon Shin, Gabsang Lee
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2021.695699

Integrated Analysis of mRNA- and miRNA-Seq in the Ovary of Rare Minnow Gobiocypris rarus in Response to 17α-Methyltestosterone
Cited by: 3
Author(s): Shaozhen Liu, Qiong Yang, Yue Chen, Qing Liu, Weiwei Wang, Jing Song, Yao Zheng, Wenzhong Liu
Software Mentions: 4
Published: about 5 years ago

10.1038/srep12872

Geochemical influences and mercury methylation of a dental wastewater microbiome
Cited by: 17
Author(s): Asha Rani, Karl J. Rockne, James L. Drummond, Muntasar Al-Hinai, Ravi Ranjan
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0137829

Indirect Energy Flows in Niche Model Food Webs: Effects of Size and Connectance
Cited by: 4
Author(s): Jane Shevtsov, Rosalyn Rael
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0087804

Delineating Ecological Boundaries of Hanuman Langur Species Complex in Peninsular India Using MaxEnt Modeling Approach
Cited by: 33
Author(s): Nag Chetan, Karanth K. Praveen, Gururaja Kotambylu Vasudeva
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0257254

Knocking out TMEM38B in human foetal osteoblasts hFOB 1.19 by CRISPR/Cas9: A model for recessive OI type XIV
Cited by: 4
Author(s): Laura Leoni, Francesca Tonelli, Roberta Besio, Roberta Gioia, Francesco Moccia, Antonio Rossi, Antonella Forlino
Software Mentions: 3
Published: about 5 years ago

10.1093/infdis/jix519

Host Transcription Profile in Nasal Epithelium and Whole Blood of Hospitalized Children Under 2 Years of Age With Respiratory Syncytial Virus Infection
Cited by: 28
Author(s): Lien Anh Ha, Johann Pellet, H. Rogier van Doorn, Anh Tuấn Trần, Bach Hue Nguyen, Thi Thu Loan Tran, Quynh Huong Tran, Quoc Bao Vo, Nguyen Anh Tran Dac, Hong Nhien Trinh, Thi Thanh Hai Nguyen, Bao Tinh Le Binh, Huu Mai Khanh Nguyen, Minh Tien Nguyen, Quang Tung Thai, Thanh Vu Vo, Ngoc Quang Minh Ngo, Thi Kim Huyen Dang, Ngoc Huong Cao, Thu Van Tran, Lu Viet Ho, Bertrand De Meulder, Charles Auffray, Jorrit–Jan H. Hofstra, Jeremy Farrar, Juliet E. Bryant, Menno D. de Jong, Martin L. Hibberd
Software Mentions: 3
Published: about 9 years ago

10.3389/fgene.2019.00903

SCDevDB: A Database for Insights Into Single-Cell Gene Expression Profiles During Human Developmental Processes
Cited by: 12
Author(s): Zishuai Wang, Xikang Feng, Shuai Cheng Li
Software Mentions: 3
Published: about 7 years ago

10.3389/fmed.2020.606461

Gene Co-expression Networks Identifies Common Hub Genes Between Cutaneous Sarcoidosis and Discoid Lupus Erythematosus
Cited by: 3
Author(s): Melissa A Nickles, Huang Kai, Yi-Shin Chang, Maria M. Tsoukas, Nadera J. Sweiss, David L. Perkins, Patricia W. Finn
Software Mentions: 3
Published: almost 6 years ago

10.3389/fgene.2019.00036

Integrative Analysis of Transcriptome and GWAS Data to Identify the Hub Genes Associated With Milk Yield Trait in Buffalo
Cited by: 45
Author(s): Tingxian Deng, Aixin Liang, Shasha Liang, Xiaoya Ma, Xingrong Lu, Anqin Duan, Chaoyou Pang, Guohua Hua, Shenhe Liu, Giuseppe Campanile, Angela Salzano, B. Gasparrini, Xianwei Liang, Liguo Yang
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0164353

Induced Human Decidual NK-Like Cells Improve Utero-Placental Perfusion in Mice
Cited by: 20
Author(s): Ricardo de Carvalho Cavalli, Ana Sofia Cerdeira, Elizabeth Pernicone, Henri Augusto Korkes, Suzanne D. Burke, Augustine Rajakumar, Ravi Thadhani, Drucilla J. Roberts, Manoj Bhasin, S. Ananth Karumanchi, Hernan D. Kopcow
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0157426

An Integrative Transcriptomic Analysis for Identifying Novel Target Genes Corresponding to Severity Spectrum in Spinal Muscular Atrophy
Cited by: 6
Author(s): Chunrong Yang, Chien‐Lin Chen, Wei-Chun Chou, Ho-Chen Lin, Yuh Jyh Jong, Li-Kai Tsai, Chun‐Yu Chuang
Software Mentions: 3
Published: over 10 years ago

10.1186/s12977-016-0248-y

TLR8 regulation of LILRA3 in monocytes is abrogated in human immunodeficiency virus infection and correlates to CD4 counts and virus loads
Cited by: 8
Author(s): Hui Zhi Low, Gerrit Ahrenstorf, Claudia Pommerenke, Nadine Habermann, Klaus Schughart, David Ordóñez, Renata Stripecke, Esther Wilk, Torsten Witte
Software Mentions: 3
Published: over 10 years ago

10.7554/eLife.33070

Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice
Cited by: 67
Author(s): Roman M. Stilling, Gerard M. Moloney, Feargal J. Ryan, Alan E. Hoban, Thomaz F.S. Bastiaanssen, Fergus Shanahan, Gerard Clarke, Marcus J. Claesson, Timothy G. Dinan, John F. Cryan
Software Mentions: 3
Published: over 8 years ago

10.1186/1742-4690-8-18

Genome-wide analysis of primary CD4+ and CD8+ T cell transcriptomes shows evidence for a network of enriched pathways associated with HIV disease
Cited by: 53
Author(s): Jing Qin Wu, Dominic E. Dwyer, Wayne B. Dyer, Jean Yee Hwa Yang, Binbin Wang, Nitin K. Saksena
Software Mentions: 3
Published: over 15 years ago

10.1371/journal.pone.0192606

Maternal high-fat diet associated with altered gene expression, DNA methylation, and obesity risk in mouse offspring
Cited by: 86
Author(s): Madeline Rose Keleher, Syeda Nuzhat Fatima Zaidi, Shyam Shah, MaryAnn Oakley, Cassondra Pavlatos, Samir El Idrissi, Xiaoyun Xing, Daofeng Li, Ting Wang, James M. Cheverud
Software Mentions: 3
Published: over 8 years ago

10.3389/fgene.2020.558725

Transcriptome Analysis of the Cerebellum of Mice Fed a Manganese-Deficient Diet
Cited by: 3
Author(s): Young Ah Seo, Eun‐Kyung Choi, Luisa Aring, Molly Paschall, Shigeki Iwase
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0231771

Phytoplankton transcriptomic and physiological responses to fixed nitrogen in the California current system
Cited by: 3
Author(s): Irina N. Shilova, Jonathan D. Magasin, Matthew M. Mills, Julie Robidart, Kendra A. Turk‐Kubo, Jonathan P. Zehr
Software Mentions: 3
Published: over 6 years ago

10.1186/s12931-019-0995-0

Identification of differentially expressed proteins in the injured lung from zinc chloride smoke inhalation based on proteomics analysis
Cited by: 13
Author(s): Xiaowei Xie, Jiemin Zhao, Lei Xie, Haiyan Wang, Yan Xiao, Yingjia She, Lingyun Ma
Software Mentions: 3
Published: over 7 years ago

10.1002/cnm.2602

Novel wave intensity analysis of arterial pulse wave propagation accounting for peripheral reflections
Cited by: 40
Author(s): Jordi Alastruey, Anthony A. E. Hunt, Peter D. Weinberg
Software Mentions: 3
Published: about 13 years ago

10.1371/journal.pone.0070429

Identification and Validation of a Multigene Predictor of Recurrence in Primary Laryngeal Cancer
Cited by: 39
Author(s): Elena Fountzilas, Vassiliki Kotoula, Nikolaos Angouridakis, Ilias Karasmanis, Ralph M. Wirtz, Anastasia G Eleftheraki, Elke Veltrup, Konstantinos Markou, Angelos Nikolaou, Dimitrios Pectasides, George Fountzilas
Software Mentions: 3
Published: about 13 years ago

10.1038/s41598-018-24978-9

Relationships between digestive efficiency and metabolomic profiles of serum and intestinal contents in chickens
Cited by: 20
Author(s): Stéphane Beauclercq, Lydie Nadal-Desbarats, Christelle Hennequet-Antier, Irène Gabriel, Sophie Tesseraud, Fanny Calenge, Elisabeth Le Bihan‐Duval, Sandrine Mignon-Grasteau
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0229334

Age-related modulations of alpha and gamma brain activities underlying anticipation and distraction
Cited by: 20
Author(s): Hesham A. ElShafei, Lesly Fornoni, Rémy Masson, Olivier Bertrand, Aurélie Bidet-Caulet
Software Mentions: 3
Published: over 6 years ago

10.1155/2020/3126592

Identification of Heat-Responsive Genes in Guar [<i>Cyamopsis tetragonoloba</i> (L.) Taub]
Cited by: 8
Author(s): Aref Alshameri, Fahad Al‐Qurainy, Abdel-Rhman Z. Gaafar, Salim Khan, Mohammad Nadeem, Saleh Alansi
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2021.620740

Differentially Expressed Genes and Enriched Signaling Pathways in the Adipose Tissue of Obese People
Cited by: 5
Author(s): Zhenhua Lu, Ling‐Bing Meng, Zhen Sun, Xiaolei Shi, Weiwei Shao, Yangyang Zheng, Xinglei Yao, Jianguo Song
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2021.696591

Identification of Atrial Fibrillation-Associated Genes ERBB2 and MYPN Using Genome-Wide Association and Transcriptome Expression Profile Data on Left–Right Atrial Appendages
Cited by: 3
Author(s): Xiangkun Meng, Yali Nie, Keke Wang, Chongxi Fan, Juntao Zhao, Yuan Yang
Software Mentions: 3
Published: over 5 years ago

10.5402/2012/546721

Computerized Decision Support System for Intraoperative Analysis of Margin Status in Breast Conservation Therapy
Cited by: 3
Author(s): Manuel E. Ruidíaz, Sarah L. Blair, Andrew C. Kummel, Jessica Wang‐Rodriguez
Software Mentions: 3
Published: almost 14 years ago

10.1371/journal.pone.0179065

Proteome profiling in IL-1β and VEGF-activated human umbilical vein endothelial cells delineates the interlink between inflammation and angiogenesis
Cited by: 64
Author(s): Thomas Mohr, Verena Haudek-Prinz, Astrid Slany, Johannes Grillari, M. Micksche, Christopher Gerner
Software Mentions: 3
Published: over 9 years ago

10.1098/rsos.190958

Low connectivity between shallow, mesophotic and rariphotic zone benthos
Cited by: 18
Author(s): Paris V. Stefanoudis, Molly Rivers, Struan R. Smith, Craig W. Schneider, Daniel Wagner, Helen Ford, Alex D. Rogers, Lucy C. Woodall
Software Mentions: 3
Published: about 7 years ago

10.7150/ijbs.56152

MLKL inhibits intestinal tumorigenesis by suppressing STAT3 signaling pathway
Cited by: 11
Author(s): Qun Zhao, Xinran Cheng, Jian Guo, Yunbo Bi, Li Qing Kuang, Jianhua Ren, Jing Zhong, Longrui Pan, Xudong Zhang, Yang Guo, Yongqiang Liu, S. Jin, Yan Tan, Yu Lei
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.36330

TFAP2 transcription factors are regulators of lipid droplet biogenesis
Cited by: 31
Author(s): Cameron C. Scott, Stefania Vossio, Jacques Rougemont, Jean Grüenberg
Software Mentions: 3
Published: about 8 years ago

10.3389/fimmu.2021.666370

lncRNA-HEIM Facilitated Liver Fibrosis by Up-Regulating TGF-β Expression in Long-Term Outcome of Chronic Hepatitis B
Cited by: 9
Author(s): Jian Yao, Changpo Lin, Jingjing Jiang, Xujun Zhang, Fengxia Li, Tianxing Liu, Hongyan Diao
Software Mentions: 3
Published: over 5 years ago

10.3389/fimmu.2020.604785

JNK1 Signaling Downstream of the EGFR Pathway Contributes to Aldara®-Induced Skin Inflammation
Cited by: 3
Author(s): Aurore Le, Abdulkader Azouz, Séverine Thomas, Nicolas Istaces, Muriel Nguyen, Stanislas Goriely
Software Mentions: 3
Published: over 5 years ago

10.1186/s10194-017-0817-z

11th European Headache Federation Congress jointly with 31st Congress of the Italian Society for the Study of Headaches
Cited by: 6
Author(s): Brigida Fierro, Giuseppe Cosentino, Salvatore Cillino, Filippo Brighina, Viviana Firpo
Software Mentions: 3
Published: almost 9 years ago

10.3389/fgene.2018.00453

Weighted Gene Co-expression Network Analysis of Endometriosis and Identification of Functional Modules Associated With Its Main Hallmarks
Cited by: 58
Author(s): Mohammad Reza Bakhtiarizadeh, Batool Hosseinpour, Maryam Shahhoseini, Arthur Korte, Peyman Gifani
Software Mentions: 3
Published: about 8 years ago

10.3389/fcell.2021.702112

Characterizing the Metabolic and Immune Landscape of Non-small Cell Lung Cancer Reveals Prognostic Biomarkers Through Omics Data Integration
Cited by: 5
Author(s): Fengjiao Wang, Yuanfu Zhang, Yangyang Hao, Xuexin Li, Yue Qi, Mengyu Xin, Qifan Xiao, Peng Wang
Software Mentions: 3
Published: over 5 years ago

10.3389/fimmu.2019.00869

Immunomodulatory Effects and Induction of Apoptosis by Different Molecular Weight Chitosan Oligosaccharides in Head Kidney Macrophages From Blunt Snout Bream (Megalobrama amblycephala)
Cited by: 17
Author(s): Changcai Wu, Yishan Dai, Gailing Yuan, Jian Su, Xiaoling Liu
Software Mentions: 3
Published: over 7 years ago

10.3389/fimmu.2020.01481

Pediatric Burn Survivors Have Long-Term Immune Dysfunction With Diminished Vaccine Response
Cited by: 8
Author(s): Blair Z. Johnson, Sonia McAlister, Helen M. McGuire, Vetrichevvel Thirthar Palanivelu, Andrew Stevenson, Peter Richmond, Debra J. Palmer, Jessica Metcalfe, Susan L. Prescott, Fiona Wood, Barbara Fazekas de St Groth, Matthew D. Linden, Mark W. Fear, Vanessa S. Fear
Software Mentions: 3
Published: over 6 years ago

10.3389/fcell.2020.620164

Analysis of Cyclin-Dependent Kinase 1 as an Independent Prognostic Factor for Gastric Cancer Based on Statistical Methods
Cited by: 7
Author(s): Xu Zhang, Hua Ma, Quan Zou, Jin Wu
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13045-020-00854-w

Identification of cross-talk between m6A and 5mC regulators associated with onco-immunogenic features and prognosis across 33 cancer types
Cited by: 44
Author(s): Yutong Chen, Jiayi Shen, Dongping Chen, Chengdong Wu, Rui Guo, Panpan Zhang, Jiawei Lv, Wenfei Li, Zi‐Xian Wang, Yu-Pei Chen
Software Mentions: 3
Published: over 6 years ago

10.3389/fimmu.2020.02039

Crosstalk Between the MSI Status and Tumor Microenvironment in Colorectal Cancer
Cited by: 160
Author(s): Anqi Lin, Jian Zhang, Peng Luo
Software Mentions: 3
Published: about 6 years ago

10.3389/fgene.2021.616388

Transcriptome Characterization of Short Distance Transport Stress in Beef Cattle Blood
Cited by: 14
Author(s): Hailin Zhao, Xiaoqin Tang, Mingli Wu, Qi Li, Xiaohua Yi, Shirong Liu, Junyi Jiang, Shuhui Wang, Xiuzhu Sun
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2020.00970

Hub Genes Identification in a Murine Model of Allergic Rhinitis Based on Bioinformatics Analysis
Cited by: 5
Author(s): Chen Le, Le Shi, Yue Ma, Cheng Zheng
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.ppat.1007950

Equine arteritis virus long-term persistence is orchestrated by CD8+ T lymphocyte transcription factors, inhibitory receptors, and the CXCL16/CXCR6 axis
Cited by: 19
Author(s): Mariano Carossino, Pouya Dini, Theodore S. Kalbfleisch, Alan T. Loynachan, Igor F. Canisso, R. Frank Cook, Peter J. Timoney, Udeni B. R. Balasuriya
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.ppat.1004869

Host Transcriptional Response to Influenza and Other Acute Respiratory Viral Infections – A Prospective Cohort Study
Cited by: 108
Author(s): Yijie Zhai, Luis M. Franco, Robert L. Atmar, John Quarles, Nancy H. Arden, Kristine L. Bucasas, Janet Wells, Diane Niño, Xueqing Wang, Gladys Zapata, Chad A. Shaw, John W. Belmont, Robert B. Couch
Software Mentions: 3
Published: over 11 years ago

10.3389/fgene.2021.690264

Comparative Transcriptome and Weighted Gene Co-expression Network Analysis Identify Key Transcription Factors of Rosa chinensis ‘Old Blush’ After Exposure to a Gradual Drought Stress Followed by Recovery
Cited by: 7
Author(s): Xin Jia, Hui Feng, Yingjie Bu, Naizhe Ji, Yingmin Lyu, Shiwei Zhao
Software Mentions: 3
Published: over 5 years ago

10.3389/fendo.2020.571151

Microarray Data of Lacrimal Gland Implicates Dysregulated Protein Processing in Endoplasmic Reticulum in Graves’ Ophthalmopathy
Cited by: 1
Author(s): Wenling Tu, Jia Yao, Zhanjun Mei, Xue Jiang, Yu-Hong Shi
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0212513

Lenvatinib plus anti-PD-1 antibody combination treatment activates CD8+ T cells through reduction of tumor-associated macrophage and activation of the interferon pathway
Cited by: 262
Author(s): Yu Kato, Kimiyo Tabata, Takayuki Kimura, Ayako Yachie‐Kinoshita, Yoichi Ozawa, Kazuhiko Yamada, Junichi Ito, Sho Tachino, Yusaku Hori, Masahiro Matsuki, Yoshikazu Matsuoka, Samik Ghosh, Hiroaki Kitano, Ken’ichi Nomoto, Junji Matsui, Yasuhiro Funahashi
Software Mentions: 3
Published: over 7 years ago

10.3389/fendo.2020.00138

Developmentally Driven Changes in Adipogenesis in Different Fat Depots Are Related to Obesity
Cited by: 10
Author(s): Jana Breitfeld, Stephanie Kehr, Luise Müller, Peter F. Stadler, Yvonne Böttcher, Matthias Blüher, Michael Stümvoll, Peter Kovacs
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms151120833

Genome-Wide Transcriptome Profiles of Rice Hybrids and Their Parents
Cited by: 11
Author(s): E Zhiguo, Shanshan Huang, Yuping Zhang, Ge Liu, Lei Wang
Software Mentions: 3
Published: almost 12 years ago

10.1038/s41598-017-07297-3

Desiccation tolerance in bryophytes: The dehydration and rehydration transcriptomes in the desiccation-tolerant bryophyte Bryum argenteum
Cited by: 37
Author(s): Bei Gao, Xiaoshuang Li, Daoyuan Zhang, Yuqing Liang, Yang Hong-yuan, Moxian Chen, Yuanming Zhang, Jianhua Zhang, Andrew J. Wood
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-017-07015-z

Biochemical profiling of diabetes disease progression by multivariate vibrational microspectroscopy of the pancreas
Cited by: 9
Author(s): Christoffer Nord, Maria Eriksson, Andrea Dicker, Anna Eriksson, Eivind Grong, Erwin Ilegems, Ronald Mårvik, Bård Kulseng, Per Olof Berggren, András Gorzsás, Ulf Ahlgren
Software Mentions: 3
Published: over 9 years ago

10.3390/ijms18040747

Metabolic Effect of an Oriental Herbal Medicine on Obesity and Its Comorbidities with Transcriptional Responses in Diet-Induced Obese Mice
Cited by: 4
Author(s): Jiyoung Choi, Ye Jin Kim, Su-Jung Cho, Eun‐Young Kwon, Ri Ryu, Myung‐Sook Choi
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0067922

Roles for Treg Expansion and HMGB1 Signaling through the TLR1-2-6 Axis in Determining the Magnitude of the Antigen-Specific Immune Response to MVA85A
Cited by: 26
Author(s): Magali Matsumiya, Elena Stylianou, Kristin Griffiths, Zoe Lang, Joel N. Meyer, Stephanie A. Harris, Rosalind Rowland, Angela M. Minassian, Ansar A. Pathan, Helen A. Fletcher, Helen McShane
Software Mentions: 3
Published: over 13 years ago

10.1038/s41598-017-11237-6

Distinct gut microbiome patterns associate with consensus molecular subtypes of colorectal cancer
Cited by: 162
Author(s): Rachel Purcell, Tina Visnovska, Patrick J. Biggs, Sebastian Schmeier, Frank Frizelle
Software Mentions: 3
Published: about 9 years ago

10.3389/fgene.2020.610350

Construction of an RNA-Binding Protein-Related Prognostic Model for Pancreatic Adenocarcinoma Based on TCGA and GTEx Databases
Cited by: 14
Author(s): Xin Wen, Zhaogang Shao, Shuyi Chen, Wei Wang, Yan Wang, Jeng Kai Jiang, Qinggong Ma, Longzhen Zhang
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0138204

A Systematic Review and Meta-Analysis of the Efficacy of Anti-Toxoplasma gondii Medicines in Humans
Cited by: 90
Author(s): Haixia Wei, Shanshan Wei, David S. Lindsay, Hong‐Juan Peng
Software Mentions: 3
Published: about 11 years ago

10.1038/s41598-017-15221-y

Deconvolution of Transcriptional Networks in Post-Traumatic Stress Disorder Uncovers Master Regulators Driving Innate Immune System Function
Cited by: 12
Author(s): Abolfazl Doostparast Torshizi, Kai Wang
Software Mentions: 3
Published: almost 9 years ago

10.3390/ijms20071587

Transcriptomic Sequencing and Co-Expression Network Analysis on Key Genes and Pathways Regulating Nitrogen Use Efficiency in Myriophyllum aquaticum
Cited by: 9
Author(s): Rui Wang, Shengjun Xu, Cancan Jiang, Hanjun Sun, Shugeng Feng, Sining Zhou, Guoqiang Zhuang, Zhihui Bai
Software Mentions: 3
Published: over 7 years ago

10.3389/fgene.2020.591079

Identifying M1 Macrophage-Related Genes Through a Co-expression Network to Construct a Four-Gene Risk-Scoring Model for Predicting Thyroid Cancer Prognosis
Cited by: 14
Author(s): Gaojian Zhuang, Yu Zeng, Qun Tang, Qian He, Guoqing Luo
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0074256

Gene Regulatory Networks Elucidating Huanglongbing Disease Mechanisms
Cited by: 90
Author(s): Federico Martinelli, Russell L. Reagan, Sandra L. Uratsu, My L. Phu, Ute Albrecht, Wenwei Zhao, Cristina E. Davis, Kim D. Bowman, Abhaya M. Dandekar
Software Mentions: 3
Published: about 13 years ago

10.1038/s41598-017-03121-0

Echo-Planar J-resolved Spectroscopic Imaging using Dual Read-outs: Implementation and Quantitation of Human Brain Metabolites
Cited by: 4
Author(s): Manoj K. Sarma, Rajakumar Nagarajan, Zohaib Iqbal, Paul M. Macey, M. Albert Thomas
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0219486

Caenorhabditis elegans hub genes that respond to amyloid beta are homologs of genes involved in human Alzheimer’s disease
Cited by: 14
Author(s): Rasoul Godini, Roger Pocock, Hossein Fallahi
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-01468-y

Transcriptional landscape of epithelial and immune cell populations revealed through FACS-seq of healthy human skin
Cited by: 15
Author(s): Richard Ahn, Keyon Taravati, Kevin Lai, Kristina M. Lee, Joanne Nititham, Rashmi Gupta, David S. Chang, Sarah T. Arron, Michael D. Rosenblum, Wilson Liao
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0094031

Disruption of the Homogentisate Solanesyltransferase Gene Results in Albino and Dwarf Phenotypes and Root, Trichome and Stomata Defects in Arabidopsis thaliana
Cited by: 12
Author(s): Yuehui Chao, Junmei Kang, Tiejun Zhang, Qingchuan Yang, Margaret Y. Gruber, Yan Sun
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0022295

Randomizing Genome-Scale Metabolic Networks
Cited by: 16
Author(s): Areejit Samal, O. C. Martin
Software Mentions: 3
Published: over 15 years ago

10.1038/srep44849

Huntington’s disease blood and brain show a common gene expression pattern and share an immune signature with Alzheimer’s disease
Cited by: 39
Author(s): Davina J. Hensman Moss, Michael Flower, Kitty Lo, James R. C. Miller, G.J.B. van Ommen, Peter A.C. ’t Hoen, Timothy Stone, Amelia Guinee, Douglas R. Langbehn, Lesley Jones, Vincent Plagnol, Willeke M. C. van Roon‐Mom, Peter Holmans, Sarah J. Tabrizi
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-018-20232-4

Lnc2Catlas: an atlas of long noncoding RNAs associated with risk of cancers
Cited by: 25
Author(s): Chao Ren, Gaole An, Chenghui Zhao, Zhangyi Ouyang, Xiaochen Bo, Wenjie Shu
Software Mentions: 3
Published: almost 9 years ago

10.1038/srep24964

Altered microRNA expression and pre-mRNA splicing events reveal new mechanisms associated with early stage Mycobacterium avium subspecies paratuberculosis infection
Cited by: 34
Author(s): Guanxiang Liang, Nilusha Malmuthuge, Yongjuan Guan, Yan Ren, Philip Griebel, Le Luo Guan
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0245501

Balancing time use for children’s fitness and adiposity: Evidence to inform 24-hour guidelines for sleep, sedentary time and physical activity
Cited by: 16
Author(s): Dorothea Dumuid, Melissa Wake, David Burgner, Mark S. Tremblay, Anthony D. Okely, Ben Edwards, Terence Dwyer, Tim Olds
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0248429

Hypomethylation mediates genetic association with the major histocompatibility complex genes in Sjögren’s syndrome
Cited by: 4
Author(s): Calvin Chi, Kimberly E. Taylor, Hong Quach, Diana Quach, Lindsey A. Criswell, Lisa F. Barcellos
Software Mentions: 3
Published: over 5 years ago

10.1016/j.dib.2017.10.014

Waste management CDM projects barriers NVivo 10® qualitative dataset
Cited by: 5
Author(s): André Luiz Bufoni, Aracéli Cristina de Sousa Ferreira, Luciano Basto Oliveira
Software Mentions: 3
Published: almost 9 years ago

10.3390/ijms22031167

Glutamine Uptake via SNAT6 and Caveolin Regulates Glutamine–Glutamate Cycle
Cited by: 14
Author(s): Nikhil R. Gandasi, Vasiliki Arapi, Michel‐Edwar Mickael, Prajakta A. Belekar, Louise Granlund, Lakshmi Kothegala, Robert Fredriksson, Sonchita Bagchi
Software Mentions: 3
Published: almost 6 years ago

10.1155/2021/9971353

P3H4 Overexpression Serves as a Prognostic Factor in Lung Adenocarcinoma
Cited by: 5
Author(s): Xiangfeng Jin, Haiqing Zhou, Jianfang Song, Hong Cui, Yiren Luo, Haiping Jiang
Software Mentions: 3
Published: over 5 years ago