Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: analysis

https://packages.ecosyste.ms/registries/pypi.org/packages/analysis

Source code analysis of Python programs
8 versions
Latest release: over 18 years ago
348 downloads last month

Papers Mentioning analysis 2,036

10.3389/fonc.2020.522015
Tumor-Infiltrating Lymphocyte-Based Risk Score for Predicting Prognosis in Gastric Cancer
Cited by: 8
Author(s): Siyuan Xie, Pingfan Mo, Ning Li, Wen Cui, Jingjing Ruan, Jun Ye, Jianshan Mao
Software Mentions: 1
Published: about 4 years ago
10.3389/fonc.2020.00818
Increased Efficacy of Histone Methyltransferase G9a Inhibitors Against MYCN-Amplified Neuroblastoma
Cited by: 15
Author(s): Jacob Bellamy, Marianna Szemes, Zsombor Melegh, Anthony R. Dallosso, Madhu Kollareddy, Daniel Catchpoole, Karim Malik
Software Mentions: 1
Published: over 4 years ago
10.3389/fonc.2015.00250
Impact of Charged Particle Exposure on Homologous DNA Double-Strand Break Repair in Human Blood-Derived Cells
Cited by: 15
Author(s): Melanie Rall, Daniela Kraft, Meta Volcic, Aljona Cucu, Elena Nasonova, G. Taucher-Scholz, Halvard Bönig, Lisa Wiesmüller, Claudia Fournier
Software Mentions: 1
Published: about 9 years ago
10.3389/fonc.2018.00468
LMO1 Gene Polymorphisms Reduce Neuroblastoma Risk in Eastern Chinese Children: A Three-Center Case-Control Study
Cited by: 10
Author(s): Lili He, Jinhong Zhu, Fei Han, Yu Tang, Chunlei Zhou, Jincheng Dai, Yizhen Wang, Haixia Zhou, Jing He, Haiyan Wu
Software Mentions: 1
Published: about 6 years ago
10.3389/fonc.2020.00915
ALDH1A3 Accelerates Pancreatic Cancer Metastasis by Promoting Glucose Metabolism
Cited by: 28
Author(s): Shuang Nie, Xuetian Qian, Mengyue Shi, Hongzhen Li, Chunyan Peng, Xiwei Ding, Shu Zhang, Bin Zhang, Guifang Xu, Ying Lv, Lei Wang, Helmut Frieß, Bo Kong, Xiaoping Zou, Shanshan Shen
Software Mentions: 1
Published: over 4 years ago
10.3389/fonc.2019.00476
Transcriptional Activation of Gstp1 by MEK/ERK Signaling Confers Chemo-Resistance to Cisplatin in Lung Cancer Stem Cells
Cited by: 15
Author(s): Jingyuan Li, Ting Ye, Yongli Liu, Liangsheng Kong, Zhiwei Sun, Rachel Liu, Yunlong Wang, H. Rosie Xing
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2021.662434
TFPI2 Promotes Perivascular Migration in an Angiotropism Model of Melanoma
Cited by: 6
Author(s): Jing Mo, Xiulan Zhao, Wei Wang, Nan Zhao, Xueyi Dong, Yanhui Zhang, Run-Fen Cheng, Baocun Sun
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2021.701492
High Counts of CD68+ and CD163+ Macrophages in Mantle Cell Lymphoma Are Associated With Inferior Prognosis
Cited by: 3
Author(s): Philippa Li, Yuan Ji, Fahad Shabbir Ahmed, Austin McHenry, Kai Fu, Guohua Yu, Hongxia Cheng, Mina L. Xu, David L. Rimm, Zenggang Pan
Software Mentions: 1
Published: about 3 years ago
10.3389/fonc.2021.594510
Pancreatic Ductal Adenocarcinoma at CT: A Combined Nomogram Model to Preoperatively Predict Cancer Stage and Survival Outcome
Cited by: 12
Author(s): Chunyuan Cen, Liying Liu, Xin Li, Ailan Wu, Huan Liu, Xinrong Wang, Heshui Wu, Chunyou Wang, Ping Han, Siqi Wang
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2021.733700
Targeting DNA Homologous Repair Proficiency With Concomitant Topoisomerase II and c-Abl Inhibition
Cited by: 4
Author(s): Arafat Siddiqui, Manuela Tumiati, Alia Joko, Jouko Sandholm, Pia Roering, Sofia Aakko, Reetta Vainionpää, Katja Kaipio, Kaisa Huhtinen, Liisa Kauppi, Johanna Tuomela, Sakari Hietanen
Software Mentions: 1
Published: about 3 years ago
10.3389/fonc.2020.01613
Significant Prognostic Value of the Autophagy-Related Gene P4HB in Bladder Urothelial Carcinoma
Cited by: 11
Author(s): Lei Lyu, Xiang Wei, Fuxin Zheng, Tao Huang, Yanjun Feng, Jun Yuan, Chuanhua Zhang
Software Mentions: 1
Published: over 4 years ago
10.3389/fonc.2019.00816
MTA3-SOX2 Module Regulates Cancer Stemness and Contributes to Clinical Outcomes of Tongue Carcinoma
Cited by: 11
Author(s): Ziting Yao, Liqun Du, Min Xu, Kai Li, Haizhou Guo, Guodong Ye, Dianzheng Zhang, Robert P. Coppes, Hao Zhang
Software Mentions: 1
Published: about 5 years ago
10.3389/fonc.2021.596573
Comprehensive Analysis of Autophagy-Associated lncRNAs Reveal Potential Prognostic Prediction in Pancreatic Cancer
Cited by: 6
Author(s): Guangyu Chen, Gang Ye, Junyu Long, Jinshou Yang, Qi Cheng, Wenhao Luo, Jiangdong Qiu, Fangyu Zhao, Lei You, Taiping Zhang, Yupei Zhao
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2021.699933
The EIF4A3/CASC2/RORA Feedback Loop Regulates the Aggressive Phenotype in Glioblastomas
Cited by: 5
Author(s): Junshuang Zhao, Yang Jiang, Lian Chen, Yue Ma, Haiying Zhang, Jinpeng Zhou, Hao Li, Zhitao Jing
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2020.554331
Carbohydrate Sulfotransferase 4 Inhibits the Progression of Hepatitis B Virus-Related Hepatocellular Carcinoma and Is a Potential Prognostic Marker in Several Tumors
Cited by: 9
Author(s): Longshan Zhang, Yu Fan, Xiaoqing Wang, Mi Yang, Xixi Wu, Weiqiang Huang, Lan Jin, Lili Liao, Wenqi Huang, Yuan Lu, Hua Pan, Yuting Wu, Longhua Chen, Jian Guan
Software Mentions: 1
Published: about 4 years ago
10.3389/fonc.2021.624837
Upregulation of KLK8 Predicts Poor Prognosis in Pancreatic Cancer
Cited by: 4
Author(s): Qing Hua, Tianjiao Li, Yixuan Liu, Xuefang Shen, Xiaoyan Zhu, Pingbo Xu
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2021.726745
Development and Validation of an Mesenchymal-Related Long Non-Coding RNA Prognostic Model in Glioma
Cited by: 5
Author(s): Kebing Huang, Xiaoyu Yue, Yinfei Zheng, Zhengwei Zhang, Meng Cheng, Lianxin Li, Zhigang Chen, Zhihao Yang, Erbao Bian, Bing Zhao
Software Mentions: 1
Published: about 3 years ago
10.3389/fonc.2021.695525
Tripartite Motif Protein 6 Promotes Colorectal Cancer Cell Migration and Metastasis via SOCS2-STAT3 Signaling
Cited by: 2
Author(s): Hang Zhao, Junjun Huang, Ming Chen, Baoru Li, Xinran Chen, Mengjie Zhou
Software Mentions: 1
Published: about 3 years ago
10.3389/fonc.2020.618215
Identification of an Immune-Related Signature for Predicting Prognosis in Patients With Pancreatic Ductal Adenocarcinoma
Cited by: 12
Author(s): Weijia Wang, Yan Liang, Xiaoya Guan, Bin Dong, Min Zhao, Jianhui Wu, Xiuyun Tian, Chunyi Hao
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2021.607224
YTHDF1 Is a Potential Pan-Cancer Biomarker for Prognosis and Immunotherapy
Cited by: 58
Author(s): Jian Hu, Dongxu Qiu, Anze Yu, Jiao Hu, Hao Deng, Huihuang Li, Zhenglin Yi, Jinbo Chen, Xiongbing Zu
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2020.00865
Ubiquitin C-Terminal Hydrolase L5 (UCHL5) Accelerates the Growth of Endometrial Cancer via Activating the Wnt/β-Catenin Signaling Pathway
Cited by: 24
Author(s): Da Liu, Zixuan Song, Xiaoying Wang, Liang Ouyang
Software Mentions: 1
Published: over 4 years ago
10.3389/fphar.2021.698981
Investigating the Pharmacological Mechanisms of SheXiang XinTongNing Against Coronary Heart Disease Based on Network Pharmacology and Experimental Evaluation
Cited by: 7
Author(s): Lijing Jia, Gui-Yun Cao, Jia Li, Lu Gan, Jinxin Li, Xin‐Yi Lan, Zhaoqing Meng, Xin He, Zhang Chunfeng, Chong‐Zhi Wang, Chun‐Su Yuan
Software Mentions: 1
Published: over 3 years ago
10.3389/fphar.2020.00802
Identification of Structural Features for the Inhibition of OAT3-Mediated Uptake of Enalaprilat by Selected Drugs and Flavonoids
Cited by: 12
Author(s): Yao Ni, Zelin Duan, Dandan Zhou, Shuai Liu, Hui-da Wan, Chunshan Gui, Hongjian Zhang
Software Mentions: 1
Published: over 4 years ago
10.3389/fphar.2018.00767
Centrally Administered Cortistation-14 Induces Antidepressant-Like Effects in Mice via Mediating Ghrelin and GABAA Receptor Signaling Pathway
Cited by: 5
Author(s): Jielin Jiang, Yan Peng, Xueya Liang, Shu Li, Xin Chang, LongFei Li, Min Chang
Software Mentions: 1
Published: over 6 years ago
10.3389/fphar.2019.01463
Ultrasound-Sensitive Liposomes for Triggered Macromolecular Drug Delivery: Formulation and In Vitro Characterization
Cited by: 25
Author(s): María Matos, Roel Deckers, Benjamin van Elburg, Guillaume Lajoinie, Barbara Santos de Miranda, Michel Versluis, Raymond M. Schiffelers, Robbert J. Kok
Software Mentions: 1
Published: almost 5 years ago
10.3389/fphar.2017.00435
Structure-Activity Relationships of Pentacyclic Triterpenoids as Potent and Selective Inhibitors against Human Carboxylesterase 1
Cited by: 45
Author(s): Li-Wei Zou, Tingfeng Dou, Ping Wang, Wei Lei, Zi-Miao Weng, Jie Hou, Dandan Wang, Yi‐Ming Fan, Weidong Zhang, Guang-Bo Ge, Lu Yang
Software Mentions: 1
Published: over 7 years ago
10.3389/fphar.2020.00178
METTL7B Is Required for Cancer Cell Proliferation and Tumorigenesis in Non-Small Cell Lung Cancer
Cited by: 32
Author(s): Dongcheng Liu, Wei Li, Fuhua Zhong, Jianhua Yin, Wei Zhou, Shixuan Li, Xuefeng Sun, Jing Xu, Guofeng Li, Yuanyuan Wen, Jiaqing Wang, Malin Hong, Zhiqiang Cheng, Jimin Yuan, Lingyun Dai, Jiandong Sun, Jigang Wang, Chen Qiu, Guangsuo Wang, Chang Zou
Software Mentions: 1
Published: over 4 years ago
10.3389/fphar.2018.00861
Cross-Database Analysis Reveals Sensitive Biomarkers for Combined Therapy for ERBB2+ Gastric Cancer
Cited by: 14
Author(s): Zhen Xiang, Xia Huang, Jiexuan Wang, Jun Zhang, Jun Ji, Ranlin Yan, Zhenggang Zhu, Wei Cai, Yingyan Yu
Software Mentions: 1
Published: over 6 years ago
10.3389/fphys.2017.00244
Dental Pulp Cells Isolated from Teeth with Superficial Caries Retain an Inflammatory Phenotype and Display an Enhanced Matrix Mineralization Potential
Cited by: 16
Author(s): Hanaa Esa Alkharobi, James Beattie, Josie L. Meade, Deirdre DeVine, Reem El-Gendy
Software Mentions: 1
Published: over 7 years ago
10.3389/fphys.2021.709506
TRIM18-Regulated STAT3 Signaling Pathway via PTP1B Promotes Renal Epithelial–Mesenchymal Transition, Inflammation, and Fibrosis in Diabetic Kidney Disease
Cited by: 9
Author(s): Qi Chen, Chan Gao, Ming Wang, Fei Xiao, Ning Zhao
Software Mentions: 1
Published: over 3 years ago
10.3389/fphys.2019.01297
Exhaled Volatile Organic Compounds Precedes Pulmonary Injury in a Swine Pulmonary Oxygen Toxicity Model
Cited by: 5
Author(s): William A. Cronin, Angela S. Forbes, Kari L. Wagner, Peter D. Kaplan, Renee N. Cataneo, Michael Phillips, Richard T. Mahon, Aaron A. Hall
Software Mentions: 1
Published: almost 5 years ago
10.3389/fpls.2021.668512
A Holistic Approach to Study Photosynthetic Acclimation Responses of Plants to Fluctuating Light
Cited by: 18
Author(s): Armida Gjindali, Helena A. Herrmann, Jean-Marc Schwartz, Giles N. Johnson, Pablo Ignacio Calzadilla
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2014.00510
Physical, metabolic and developmental functions of the seed coat
Cited by: 109
Author(s): Volodymyr Radchuk, Ljudmilla Borisjuk
Software Mentions: 1
Published: about 10 years ago
10.3389/fpls.2015.00989
Extensive Transcriptome Changes During Natural Onset and Release of Vegetative Bud Dormancy in Populus
Cited by: 80
Author(s): Glenn T. Howe, David P. Horvath, Palitha Dharmawardhana, Henry D. Priest, Todd C. Mockler, Steven H. Strauss
Software Mentions: 1
Published: almost 9 years ago
10.3389/fpls.2018.00884
A Dynamic Multi-Tissue Flux Balance Model Captures Carbon and Nitrogen Metabolism and Optimal Resource Partitioning During Arabidopsis Growth
Cited by: 40
Author(s): Rahul Shaw, C. Y. Maurice Cheung
Software Mentions: 1
Published: over 6 years ago
10.3389/fpsyg.2014.01008
Expertise affects representation structure and categorical activation of grasp postures in climbing
Cited by: 17
Author(s): Bettina Bläsing, Iris Güldenpenning, Dirk Koester, Thomas Schack
Software Mentions: 1
Published: about 10 years ago
10.3389/fpsyg.2016.01147
Social Information Transmission in Animals: Lessons from Studies of Diffusion
Cited by: 43
Author(s): Julie Duboscq, Valéria Romano, Andrew J. J. MacIntosh, Cédric Sueur
Software Mentions: 1
Published: over 8 years ago
10.3389/fpsyg.2014.00983
An approximate measurement invariance approach to within-couple relationship quality
Cited by: 16
Author(s): Carlo Chiorri, Thomas Day, Lars‐Erik Malmberg
Software Mentions: 1
Published: about 10 years ago
10.3389/fpsyg.2021.725694
Mathematics Disability vs. Learning Disability: A 360 Degree Analysis
Cited by: 0
Author(s): Roderick I. Nicolson, Angela J. Fawcett
Software Mentions: 1
Published: about 3 years ago
10.3389/fpubh.2020.574915
Prediction of COVID-19 Patients at High Risk of Progression to Severe Disease
Cited by: 13
Author(s): Zhenyu Dai, Dong Zeng, Dawei Cui, Dawei Wang, Yinchang Feng, Yuhan Shi, Liang Zhao, Jingjing Xu, Wang Guo, Yuexiang Yang, Xinguo Zhao, Duoduo Li, Yi Zheng, Ao Wang, Minmin Wu, Shu Song, Hongzhou Lu
Software Mentions: 1
Published: almost 4 years ago
10.3389/fnsys.2017.00021
Assessing Somatosensory Utilization during Unipedal Postural Control
Cited by: 3
Author(s): Rahul Goel, Y. E. De Dios, N. E. Gadd, E. E. Caldwell, B. T. Peters, Millard F. Reschke, Jacob J. Bloomberg, Lars Oddsson, Ajitkumar P. Mulavara
Software Mentions: 1
Published: over 7 years ago
10.3389/fvets.2014.00004
Peptide Arrays for Kinome Analysis of Livestock Species
Cited by: 12
Author(s): Joanna Daigle, Brenden Van Wyk, Brett Trost, Erin Scruten, Ryan J. Arsenault, Anthony Kusalik, Philip Griebel, Scott Napper
Software Mentions: 1
Published: about 10 years ago
10.1534/g3.115.024885
Identification and Characterization of Wor4, a New Transcriptional Regulator of White-Opaque Switching
Cited by: 45
Author(s): Matthew B. Lohse, Alexander D. Johnson
Software Mentions: 1
Published: over 8 years ago
10.1534/g3.117.042283
Systematic Analysis of the DNA Damage Response Network in Telomere Defective Budding Yeast
Cited by: 6
Author(s): Eva-Maria Holstein, Hien-Ping Ngo, Conor Lawless, Peter Banks, Matthew Greetham, Darren J. Wilkinson, David Lydall
Software Mentions: 1
Published: over 7 years ago
10.3390/genes10020141
N6-Methyladenosine Landscape of Glioma Stem-Like Cells: METTL3 Is Essential for the Expression of Actively Transcribed Genes and Sustenance of the Oncogenic Signaling
Cited by: 71
Author(s): Abhirami Visvanathan, Vikas Patil, Shibla Abdulla, Jörg D. Hoheisel, Kumaravel Somasundaram
Software Mentions: 1
Published: almost 6 years ago
10.3390/genes10121025
Defining Mental and Behavioural Disorders in Genetically Determined Neurodevelopmental Syndromes with Particular Reference to Prader-Willi Syndrome
Cited by: 21
Author(s): Anthony Holland, Lucie Aman, Joyce Whittington
Software Mentions: 1
Published: almost 5 years ago
10.3390/genes11040440
LRRC19—A Bridge between Selenium Adjuvant Therapy and Renal Clear Cell Carcinoma: A Study Based on Datamining
Cited by: 7
Author(s): Yitong Zhang, Jiaxing Wang, Xiqing Liu
Software Mentions: 1
Published: over 4 years ago
10.3390/genes11050530
Trans-Atlantic Distribution and Introgression as Inferred from Single Nucleotide Polymorphism: Mussels Mytilus and Environmental Factors
Cited by: 31
Author(s): Roman Wenne, Małgorzata Zbawicka, Lis Bach, Petr Strelkov, М. М. Ганцевич, Piotr Kukliński, Tomasz Kijewski, John H. McDonald, Kristil Kindem Sundsaasen, Mariann Árnyasi, Sigbjørn Lien, Ants Kaasik, Kristjan Herkül, Jonne Kotta
Software Mentions: 1
Published: over 4 years ago
10.3390/genes11111247
Expression Quantitative Trait Locus Mapping in Pulmonary Arterial Hypertension
Cited by: 3
Author(s): Anna Ulrich, Pablo Otero-Núñez, John Wharton, Emilia M. Swietlik, Stefan Gräf, Nicholas W. Morrell, Dennis Wang, Allan Lawrie, Martin R. Wilkins, Inga Prokopenko, Christopher J. Rhodes, on behalf of The NIHR BioResource—Rare Diseases Consortium, UK PAH Cohort Study Consortium
Software Mentions: 1
Published: about 4 years ago
10.3390/genes11121476
Clustering Analysis Supports the Detection of Biological Processes Related to Autism Spectrum Disorder
Cited by: 7
Author(s): Leonardo Emberti Gialloreti, Roberto Enea, Valentina Di Micco, Daniele Di Giovanni, Paolo Curatolo
Software Mentions: 1
Published: almost 4 years ago
10.3390/genes12010120
HEDGEHOG/GLI Modulates the PRR11-SKA2 Bidirectional Transcription Unit in Lung Squamous Cell Carcinomas
Cited by: 6
Author(s): Yiyun Sun, Dandan Xu, Chundong Zhang, Ying Wang, Lian Zhang, Deqian Qiao, Youquan Bu, Ying Zhang
Software Mentions: 1
Published: almost 4 years ago
10.3390/genes12030395
The Genome Stability Maintenance DNA Helicase DDX11 and Its Role in Cancer
Cited by: 9
Author(s): Mohammad Mahtab, Ana Boavida, David S. dos Santos, Francesca M. Pisani
Software Mentions: 1
Published: over 3 years ago
10.3390/genes12030448
Pilot Study to Detect Genes Involved in DNA Damage and Cancer in Humans: Potential Biomarkers of Exposure to E-Cigarette Aerosols
Cited by: 6
Author(s): Samera H. Hamad, Marielle C. Brinkman, Yi-Hsuan Tsai, Namya Mellouk, Kandice Cross, Ilona Jaspers, Pamela I. Clark, Courtney A. Granville
Software Mentions: 1
Published: over 3 years ago
10.1002/gepi.21919
A Bayesian Approach to the Overlap Analysis of Epidemiologically Linked Traits
Cited by: 4
Author(s): Jennifer Asimit, Kalliope Panoutsopoulou, Eleanor Wheeler, Sonja I. Berndt, Heather J. Cordell, Andrew P. Morris, Eleftheria Zeggini, Inês Barroso
Software Mentions: 1
Published: about 9 years ago
10.1186/s12711-018-0376-z
Single nucleotide polymorphisms in native South American Atlantic coast populations of smooth shelled mussels: hybridization with invasive European Mytilus galloprovincialis
Cited by: 39
Author(s): Małgorzata Zbawicka, María I. Trucco, Roman Wenne
Software Mentions: 1
Published: almost 7 years ago
10.1128/genomeA.01343-16
Genome Sequence of Airborne Acinetobacter sp. Strain 5-2Ac02 in the Hospital Environment, Close to the Species of Acinetobacter towneri
Cited by: 3
Author(s): Beathriz Godoy Vilela Barbosa, Laura Fernández-García, Eva Gato, María López, Lucía Blasco, Robson Souza Leão, Rodolpho Mattos Albano, B. Fernández, Felipe-Fernández Cuenca, Álvaro Pascual, Germán Bou, Elizabeth Andrade Marques, María Tomás
Software Mentions: 1
Published: almost 8 years ago
10.1128/genomeA.00016-18
Complete Genome Sequences of Six Listeria monocytogenes Sequence Type 9 Isolates from Meat Processing Plants in Norway
Cited by: 8
Author(s): Annette Fagerlund, Solveig Langsrud, Birgitte Moen, Even Heir, Trond Møretrø
Software Mentions: 1
Published: almost 7 years ago
10.1186/gb-2005-6-10-r89
Cited by: 136
Author(s): Robert Riley, Christopher Lee, Chiara Sabatti, David Eisenberg
Software Mentions: 1
Published: almost 20 years ago
10.1186/gb-2007-8-5-r89
GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosis metabolism
Cited by: 191
Author(s): Dany J. V. Beste, Tracy. Hooper, Graham R. Stewart, Bhushan Bonde, Claudio Avignone–Rossa, Michael E. Bushell, Paul R. Wheeler, Steffen Klamt, Andrzej M. Kierzek, Johnjoe McFadden
Software Mentions: 1
Published: almost 18 years ago
10.1186/gb-2007-8-10-r209
All duplicates are not equal: the difference between small-scale and genome duplication
Cited by: 167
Author(s): Luke Hakes, John W. Pinney, Simon C. Lovell, Stephen G. Oliver, David L. Robertson
Software Mentions: 1
Published: almost 18 years ago
10.1186/gb-2008-9-12-r176
Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution
Cited by: 10
Author(s): Carlos Quijano, Pavel Tomančák, Jesús María López-Martí, Mikita Suyama, Peer Bork, Marco Milán, David Torrents, Miguel Manzanares
Software Mentions: 1
Published: almost 17 years ago
10.1186/s13059-016-0892-5
The aspirin-induced long non-coding RNA OLA1P2 blocks phosphorylated STAT3 homodimer formation
Cited by: 70
Author(s): Haiyan Guo, Jun Li, Qiwen Ben, Yuehong Qu, Man Li, Ying Wang, Wantao Chen, Jianjun Zhang
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13059-019-1661-z
Genome-scale network model of metabolism and histone acetylation reveals metabolic dependencies of histone deacetylase inhibitors
Cited by: 32
Author(s): Fangzhou Shen, Luigi Boccuto, Rini Pauly, Sujata Srikanth, Sriram Chandrasekaran
Software Mentions: 1
Published: over 5 years ago
10.1186/s13059-020-02074-4
An evolutionary driver of interspersed segmental duplications in primates
Cited by: 17
Author(s): Stuart Cantsilieris, Susan M. Sunkin, Matthew E. Johnson, Fabio Anaclerio, John Huddleston, Carl Baker, Max L. Dougherty, Jason G. Underwood, Arvis Sulovari, PingHsun Hsieh, Yafei Mao, Claudia Rita Catacchio, Maika Malig, AnneMarie E. Welch, Melanie Sorensen, Katherine M. Munson, Weihong Jiang, Santhosh Girirajan, Mario Ventura, Bruce T. Lamb, Ronald A. Conlon, Evan E. Eichler
Software Mentions: 1
Published: over 4 years ago
10.1186/s13059-021-02266-6
CRISPRi enables isoform-specific loss-of-function screens and identification of gastric cancer-specific isoform dependencies
Cited by: 10
Author(s): Rebecca G. Davies, Ling Liu, S. Y. Tong, Natasha Tuano, Richa Chaturvedi, Kie Kyon Huang, Catherine Itman, Amit Mandoli, Aditi Qamra, Changyuan Hu, David Powell, Roger J. Daly, Patrick Tan, Joseph Rosenbluh
Software Mentions: 1
Published: almost 4 years ago
10.1186/gm313
Differential effects of dietary supplements on metabolomic profile of smokers versus non-smokers
Cited by: 12
Author(s): Robert C. Spitale, Michelle Y. Cheng, Kimberly Chun, Emily S. Gorell, Claudia A Munoz, Dale Kern, Steve M Wood, Helen Knaggs, Jacob Wulff, Kirk Beebe, Anne Lynn S. Chang
Software Mentions: 1
Published: almost 13 years ago
10.1186/s13073-014-0110-6
Plasmodium falciparumgene expression measured directly from tissue during human infection
Cited by: 11
Author(s): Daria Van Tyne, Yan Tan, Johanna P. Daily, Steve Kamiza, Karl B. Seydel, Terrie E. Taylor, Jill P. Mesirov, Dyann F. Wirth, Danny A. Milner
Software Mentions: 1
Published: about 10 years ago
10.1016/j.gpb.2018.12.008
Transcriptome and Regulatory Network Analyses of CD19-CAR-T Immunotherapy for B-ALL
Cited by: 30
Author(s): Qiong Zhang, Hui Hu, Si-Yi Chen, Chunjie Liu, Jianming Yu, Yaohui Wu, An‐Yuan Guo
Software Mentions: 1
Published: over 5 years ago
10.1093/gigascience/giaa098
Multimodal signal dataset for 11 intuitive movement tasks from single upper extremity during multiple recording sessions
Cited by: 30
Author(s): Ji Hoon Jeong, Jeong-Hyun Cho, Kyung Hwan Shim, Byoung Hee Kwon, Byeong Hoo Lee, Do Yeun Lee, Dae Hyeok Lee, Seong Whan Lee
Software Mentions: 1
Published: about 4 years ago
10.1002/hbm.25174
<scp>P300</scp> ‐mediated modulations in self–other processing under psychedelic psilocybin are related to connectedness and changed meaning: A window into the self–other overlap
Cited by: 20
Author(s): Lukasz Smigielski, Michael Kometer, Milan Scheidegger, Cornelia Stress, Katrin H. Preller, Thomas Koenig, Franz X. Vollenweider
Software Mentions: 1
Published: over 4 years ago
10.1186/s13012-019-0879-1
How the study of networks informs knowledge translation and implementation: a scoping review
Cited by: 41
Author(s): Stephanie Glegg, Emily Jenkins, Anita Kothari
Software Mentions: 1
Published: over 5 years ago
10.1128/IAI.01057-15
Variation in Inflammatory Response during Pneumococcal Infection Is Influenced by Host-Pathogen Interactions but Associated with Animal Survival
Cited by: 6
Author(s): Magda S. Jonczyk, Laura Escudero, Nicolas Sylvius, M Norman, Birgitta Henriques‐Normark, Peter W. Andrew
Software Mentions: 1
Published: over 8 years ago
10.1016/j.invent.2020.100346
Estimating causal effects of internet interventions in the context of nonadherence
Cited by: 5
Author(s): Hugo Hesser
Software Mentions: 1
Published: about 4 years ago
10.1172/jci.insight.149278
Multitissue 2H/13C flux analysis reveals reciprocal upregulation of renal gluconeogenesis in hepatic PEPCK-C–knockout mice
Cited by: 19
Author(s): Mohsin Rahim, Clinton M. Hasenour, Tomasz Bednarski, Curtis C. Hughey, David H. Wasserman, Jamey D. Young
Software Mentions: 1
Published: over 3 years ago
10.1155/2018/6789704
Geographical Characterization of Tunisian Olive Tree Leaves (cv. Chemlali) Using HPLC-ESI-TOF and IT/MS Fingerprinting with Hierarchical Cluster Analysis
Cited by: 10
Author(s): Amani Taamalli, David Arráez-Román, Ana María Gómez-Caravaca, Mokhtar Zarrouk, Antonio Segura‐Carretero
Software Mentions: 1
Published: almost 7 years ago
10.1107/S1600576716013704
Formation of swift heavy ion tracks on a rutile TiO<sub>2</sub> (001) surface
Cited by: 19
Author(s): Marko Karlušić, Sigrid Bernstorff, Zdravko Siketić, Branko Šantić, Ivančica Bogdanović-Radović, Milko Jakšić, Marika Schleberger, Maja Buljan
Software Mentions: 1
Published: about 8 years ago
10.1186/s12929-018-0479-4
Znf179 E3 ligase-mediated TDP-43 polyubiquitination is involved in TDP-43- ubiquitinated inclusions (UBI) (+)-related neurodegenerative pathology
Cited by: 31
Author(s): Yi Chao Lee, Wan-Chen Huang, Ji-Ping Lin, Tzu-Jen Kao, Hui Ching Lin, Kuen-Haur Lee, Herng‐Ching Lin, Che Kun James Shen, Wen Chang Chang, Chun‐Chieh Huang
Software Mentions: 1
Published: about 6 years ago
10.4172/2155-9864.1000325
Binding of Factor VIII to Lipid Nanodiscs Increases its Clotting Function in a Mouse Model of Hemophilia A
Cited by: 3
Author(s): Keri Csencsits-Smith, Krill Grushin
Software Mentions: 1
Published: almost 10 years ago
10.1002/jbmr.300
The calcium-sensing receptor mediates bone turnover induced by dietary calcium and parathyroid hormone in neonates
Cited by: 35
Author(s): Lei Shu, Ji Ji, Qi Zhu, Guiying Cao, Andrew C. Karaplis, Martin R. Pollak, Edward M. Brown, David Goltzman, Dengshun Miao
Software Mentions: 1
Published: over 13 years ago
10.1002/jcsm.12502
Muscle mass, strength, and physical performance predicting activities of daily living: a meta‐analysis
Cited by: 250
Author(s): Daniel X.M. Wang, J. Yao, Yasar Zirek, Esmee M. Reijnierse, Andrea B. Maier
Software Mentions: 1
Published: almost 5 years ago
10.7150/jca.38274
Development and validation of a robust multigene signature as an aid to predict early relapse in stage I-III clear cell and papillary renal cell cancer
Cited by: 5
Author(s): Da Long Cao, Wei Dai, Yong Huang, Lei Yu, Jun Wu, Guo Hai Shi, Hai Liang Zhang, Yao Zhu, Bo Dai, Ding Wei Ye
Software Mentions: 1
Published: almost 5 years ago
10.7150/jca.46670
MLAA-34 knockdown shows enhanced antitumor activity via JAK2/STAT3 signaling pathway in acute monocytic leukemia
Cited by: 2
Author(s): Bo Lei, Qian Lü, Yanping Zhang, Yinxia Chen, Meili Gao, Walayat Shah, Xing‐Mei Cao, Pengyu Zhang, Wanhong Zhao, Jie Liu, Jianli Wang, Xiaoli Ma, Yun Yang, Xin Meng, Fengmei Cai, Xu Yang, Jing Luo, Baiyan Wang, Yang Zhang, Aili He, Wanggang Zhang
Software Mentions: 1
Published: almost 5 years ago
10.7150/jca.47978
Diagnostic and prognostic value of <i>FOXD1</i> expression in head and neck squamous cell carcinoma
Cited by: 8
Author(s): Shijie Qiu, Dan Li, Zhisen Shen, Qun Li, Yi Shen, Hongxia Deng, Yidong Wu, Chongchang Zhou
Software Mentions: 1
Published: almost 4 years ago
10.7150/jca.55079
Overexpression of ZNF460 predicts worse survival and promotes metastasis through JAK2/STAT3 signaling pathway in patient with colon cancer
Cited by: 13
Author(s): Tong Hao, Jiannan Xu, Sufen Fang, Jian Jiang, Xinyuan Chen, Wenhui Wu, Liang Li, Mingzhe Li, Changhua Zhang, Yulong He
Software Mentions: 1
Published: almost 4 years ago
10.1007/s00432-021-03753-w
The association of immunosurveillance and distant metastases in colorectal cancer
Cited by: 4
Author(s): Sven Jacob, Vindi Jurinović, Christopher Lampert, Elise Pretzsch, Jörg Kumbrink, Jens Neumann, Haoyu Ren, Bernhard W. Renz, Thomas Kirchner, Markus Guba, Jens Werner, Martin K. Angele, Florian Bösch
Software Mentions: 1
Published: about 3 years ago
10.1186/s12968-016-0312-8
Feasibility of cardiovascular magnetic resonance derived coronary wave intensity analysis
Cited by: 5
Author(s): Claire E. Raphael, Jennifer Keegan, Kim H. Parker, Robin Simpson, J Collinson, Vassilios Vassiliou, Ricardo Wage, Peter Drivas, Stephen Strain, Robert Cooper, Ranil de Silva, Rod Stables, Carlo Di Mario, Michael Frenneaux, Dudley J Pennell, Justin E. Davies, Alun D. Hughes, David N. Firmin, Sanjay K. Prasad
Software Mentions: 1
Published: almost 8 years ago
10.1111/j.1582-4934.2012.01567.x
Interactions between inflammatory signals and the progesterone receptor in regulating gene expression in pregnant human uterine myocytes
Cited by: 33
Author(s): Yun Lee, Suren R. Sooranna, Vasso Terzidou, Mark Christian, Jan J. Brosens, Kaisa Huhtinen, Matti Poutanen, Geraint Barton, Mark R. Johnson, Phillip R. Bennett
Software Mentions: 1
Published: about 12 years ago
10.1242/jcs.194241
Sideroflexin 3 is a α-synuclein-dependent mitochondrial protein that regulates synaptic morphology
Cited by: 18
Author(s): Inês S. Amorim, Laura C. Graham, Roderick N. Carter, Nicholas M. Morton, Fella Hammachi, Tilo Kunath, Giuseppa Pennetta, Sarah M. Carpanini, Jean Manson, Douglas J. Lamont, Thomas M. Wishart, Thomas H. Gillingwater
Software Mentions: 1
Published: almost 8 years ago
10.1186/1758-2946-6-13
TCMSP: a database of systems pharmacology for drug discovery from herbal medicines
Cited by: 2,452
Author(s): Jinlong Ru, Peng Li, Jinan Wang, Wei Zhou, Bohui Li, Chao Huang, Pidong Li, Zihu Guo, Weiyang Tao, Yinfeng Yang, Xu Xue, Yan Li, Yonghua Wang, Lu Yang
Software Mentions: 1
Published: over 10 years ago
10.4317/jced.53061
Dynamic thermo-mechanical properties of various flowable resin composites
Cited by: 1
Author(s): Stéphanie Jager, Rémy Balthazard, Micky Vincent, Abdessellam Dahoun, Éric Mortier
Software Mentions: 1
Published: almost 9 years ago
10.1002/jcla.23425
HIP1R acts as a tumor suppressor in gastric cancer by promoting cancer cell apoptosis and inhibiting migration and invasion through modulating Akt
Cited by: 5
Author(s): Junjie Zhu, Xin Wang, Huiyuan Guan, Qiu Xiao, Zhonghua Wu, Jinxin Shi, Fei Zhang, Peng Gao, Yongxi Song, Zhenning Wang
Software Mentions: 1
Published: over 4 years ago
10.3390/jcm8060852
Cardiac Autonomic Derangement Is Associated with Worse Neurological Outcome in the Very Early Phases of Ischemic Stroke
Cited by: 9
Author(s): Eleonora Tobaldini, R. Sacco, Serena Serafino, Michele Fidel Tassi, Gianluca Gallone, Monica Solbiati, Giorgio Costantino, Nicola Montano, Giuseppe Torgano
Software Mentions: 1
Published: over 5 years ago
10.3390/jcm10020366
Chromatin Remodeler CHD8 in Autism and Brain Development
Cited by: 14
Author(s): Anke Hoffmann, Dietmar Spengler
Software Mentions: 1
Published: almost 4 years ago
10.1155/2013/263845
Investigation of the Protective Effects of Phlorizin on Diabetic Cardiomyopathy in<i>db/db</i>Mice by Quantitative Proteomics
Cited by: 41
Author(s): Qian Cai, Baoying Li, Fei Yu, Weida Lu, Zhen Zhang, Ming Yin, Haiqing Gao
Software Mentions: 1
Published: almost 12 years ago
10.1186/s13002-018-0228-5
Survey of farmers’ knowledge of cassava mosaic disease and their preferences for cassava cultivars in three agro-ecological zones in Benin
Cited by: 16
Author(s): Jerome Anani Houngue, Justin S. Pita, Gilles Habib Todjro Cacaï, Martine Zandjanakou-Tachin, Emmanuel A. E. Abidjo, Corneille Ahanhanzo
Software Mentions: 1
Published: over 6 years ago
10.1242/jeb.206961
Molecular mechanisms of biomineralization in marine invertebrates
Cited by: 49
Author(s): Melody S. Clark
Software Mentions: 1
Published: over 4 years ago
10.1155/2020/2510951
PPARG Could Work as a Valid Therapeutic Strategy for the Treatment of Lung Squamous Cell Carcinoma
Cited by: 13
Author(s): Sixiang Shi, Guiping Yu, Bin Huang, Yedong Mi, Yan Kang, Julia Pia Simon
Software Mentions: 1
Published: over 4 years ago
10.3390/polym12112612
Biodegradable Starch/Chitosan Foam via Microwave Assisted Preparation: Morphology and Performance Properties
Cited by: 14
Author(s): Xian Zhang, Zhuangzhuang Teng, Runzhou Huang
Software Mentions: 1
Published: about 4 years ago
10.1073/pnas.1810633116
TRPM7 is the central gatekeeper of intestinal mineral absorption essential for postnatal survival
Cited by: 75
Author(s): Lorenz Mittermeier, Lusine Demirkhanyan, Benjamin Sliwa, Andreas Breit, Camilla Recordati, Anne Hilgendorff, Masayuki Matsushita, Attila Braun, David G. Simmons, Eleonora Zakharian, Thomas Gudermann, Vladimir Chubanov
Software Mentions: 1
Published: almost 6 years ago
10.1073/pnas.1905534116
Awakening: Predicting external stimulation to force transitions between different brain states
Cited by: 156
Author(s): Gustavo Deco, Josephine Cruzat, Joana Cabral, Enzo Tagliazucchi, Helmut Laufs, Nikos K. Logothetis, Morten L. Kringelbach
Software Mentions: 1
Published: over 5 years ago