10.7717/peerj.11953

Non-linear genetic diversity and notable population differentiation caused by low gene flow of bermudagrass [<i>Cynodon dactylon</i> (L.) Pers.] along longitude gradients
Cited by: 1
Author(s): Jing-Xue Zhang, Miaoli Wang, Jibiao Fan, Zhipeng Guo, Yongzhuo Guan, Guoqiang Qu, Chuanjie Zhang, Yuxia Guo, Xuebing Yan
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.4674

Bioinformatic analysis and identification of potential prognostic microRNAs and mRNAs in thyroid cancer
Cited by: 36
Author(s): Jianing Tang, Deguang Kong, Qiuxia Cui, Kun Wang, Dan Zhang, Qianqian Yuan, Xing Liao, Yan Gong
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.7325

In silico analyses of CD14 molecule reveal significant evolutionary diversity, potentially associated with speciation and variable immune response in mammals
Cited by: 8
Author(s): Olanrewaju B. Morenikeji, Bolaji N. Thomas
Software Mentions: 1
Published: over 7 years ago

10.3390/pharmaceutics12030212

The Effect of Cooling on the Degree of Crystallinity, Solid-State Properties, and Dissolution Rate of Multi-Component Hot-Melt Extruded Solid Dispersions
Cited by: 10
Author(s): Dean Hurley, Mark T. Davis, Gavin Walker, John G. Lyons, Clement L. Higginbotham
Software Mentions: 1
Published: over 6 years ago

10.14814/phy2.14508

Prominin‐1‐expressing hepatic progenitor cells induce fibrogenesis in murine cholestatic liver injury
Cited by: 7
Author(s): Michael Fenlon, Celia Short, Jiabo Xu, Nicolas Malkoff, Elaa Mahdi, Michelle Hough, Alison Glazier, Calvin Lee, Kinji Asahina, Kasper S. Wang
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9111467

Nutrient Diagnosis of Fertigated “Prata” and “Cavendish” Banana (Musa spp.) at Plot-Scale
Cited by: 14
Author(s): Antonio João de Lima Neto, José Aridiano Lima de Deus, Vagner Alves Rodrigues Filho, William Natale, Léon E. Parent
Software Mentions: 1
Published: almost 6 years ago

10.3390/plants10020276

Effects of Different Planting Densities on Photosynthesis in Maize Determined via Prompt Fluorescence, Delayed Fluorescence and P700 Signals
Cited by: 8
Author(s): Wanying Chen, Bo Jia, Junyu Chen, Youzhi Feng, Yue Li, Miantai Chen, Huanhuan Liu, Zhitong Yin
Software Mentions: 1
Published: over 5 years ago

10.3390/plants10050931

Combining Genetic and Multidimensional Analyses to Identify Interpretive Traits Related to Water Shortage Tolerance as an Indirect Selection Tool for Detecting Genotypes of Drought Tolerance in Wheat Breeding
Cited by: 11
Author(s): Ibrahim Al-Ashkar, Nasser Al-Suhaibani, Kamel A. Abdella, Mohammed Sallam, Majed A. Alotaibi, Mahmoud F. Seleiman
Software Mentions: 1
Published: over 5 years ago

10.3390/plants9020222

Comparative Inner Morphological and Chemical Studies on Reynoutria Species in Korea
Cited by: 5
Author(s): Atif Ali Khan Khalil, Kazi-Marjahan Akter, Hye-Jin Kim, Woo Sung Park, Dong-Min Kang, Kyung Ah Koo, Mi‐Jeong Ahn
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.2005264

Peripherally derived macrophages modulate microglial function to reduce inflammation after CNS injury
Cited by: 143
Author(s): Andrew D. Greenhalgh, Juan G. Zarruk, Luke M. Healy, Sam Joshva Baskar Jesudasan, Priya Jhelum, Christopher Salmon, Albert Formanek, Matthew V. Russo, Jack P. Antel, Dorian B. McGavern, Barry W. McColl, Samuel David
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pbio.2006026

FusC, a member of the M16 protease family acquired by bacteria for iron piracy against plants
Cited by: 16
Author(s): Rhys Grinter, Iain D. Hay, Jiangning Song, Jiawei Wang, Don Teng, Vijay Dhanesakaran, Jonathan J. Wilksch, Mark R. Davies, Dene R. Littler, Simone A. Beckham, Ian R. Henderson, Richard A. Strugnell, Gordon Dougan, Trevor Lithgow
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pcbi.1007036

Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models
Cited by: 56
Author(s): Vikash Pandey, Noushin Hadadi, Vassily Hatzimanikatis
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1002662

Shrinking the Metabolic Solution Space Using Experimental Datasets
Cited by: 75
Author(s): Jennifer L. Reed
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pcbi.1000145

Intramolecular Cohesion of Coils Mediated by Phenylalanine–Glycine Motifs in the Natively Unfolded Domain of a Nucleoporin
Cited by: 49
Author(s): Viswanathan V Krishnan, Edmond Y. Lau, Justin Yamada, Daniel P. Denning, Samir S. Patel, Michael E. Colvin, Michael Rexach
Software Mentions: 1
Published: about 18 years ago

10.1371/journal.pcbi.1006364

Comparative structural dynamic analysis of GTPases
Cited by: 18
Author(s): Hongyang Li, Xin‐Qiu Yao, Barry J. Grant
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pcbi.1000812

The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes
Cited by: 46
Author(s): Valentina Baldazzi, Delphine Ropers, Yves Markowicz, Daniel Kahn, Johannes Geiselmann, Hidde de Jong
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pcbi.1003368

Structural Control of Metabolic Flux
Cited by: 10
Author(s): Max Sajitz-Hermstein, Zoran Nikoloski
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pcbi.1002415

System-Level Insights into Yeast Metabolism by Thermodynamic Analysis of Elementary Flux Modes
Cited by: 67
Author(s): Stefan J. Jol, Anne Kümmel, Marco Terzer, Jörg Stelling, Matthias Heinemann
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pcbi.1000970

An Automated Phenotype-Driven Approach (GeneForce) for Refining Metabolic and Regulatory Models
Cited by: 43
Author(s): Dipak Barua, Joonhoon Kim, Jennifer L. Reed
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pcbi.1004075

Proportionality: A Valid Alternative to Correlation for Relative Data
Cited by: 219
Author(s): David Lovell, Vera Pawlowsky‐Glahn, J. J. Egozcue, Samuel Marguerat, Jürg Bähler
Software Mentions: 1
Published: over 11 years ago

10.1371/currents.md.9a3e357a0154d01050b591601cbd4fdb

Benefits of Pre-natal Taurine Supplementation in Preventing the Onset of Acute Damage in the Mdx Mouse
Cited by: 12
Author(s): Robert G. Barker, Deanna Horvath, Chris van der Poel, Robyn M. Murphy
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pgen.1002374

SREBP Coordinates Iron and Ergosterol Homeostasis to Mediate Triazole Drug and Hypoxia Responses in the Human Fungal Pathogen Aspergillus fumigatus
Cited by: 148
Author(s): Michael Blatzer, Bridget M. Barker, Sven D. Willger, Nicola Beckmann, Sara J. Blosser, E. Jean Cornish, Aurélien Mazurie, Nora Grahl, Hubertus Haas, Robert A. Cramer
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pgen.1000977

An Integration of Genome-Wide Association Study and Gene Expression Profiling to Prioritize the Discovery of Novel Susceptibility Loci for Osteoporosis-Related Traits
Cited by: 190
Author(s): Yi‐Hsiang Hsu, M. Carola Zillikens, Scott G. Wilson, Charles R. Farber, Serkalem Demissie, Nicole Soranzo, Estelle N. Bianchi, Elin Grundberg, Liming Liang, J. Brent Richards, Karol Estrada, Yanhua Zhou, Atila van Nas, Miriam F. Moffatt, Guangju Zhai, Albert Hofman, Joyce B. J. van Meurs, Huibert A. P. Pols, Roger I. Price, Olle Nilsson, Tomi Pastinen, L. Adrienne Cupples, Aldons J. Lusis, Eric E. Schadt, Serge Ferrari, André G. Uitterlinden, Fernando Rivadeneira, Timothy D. Spector, David Karasik, Douglas P. Kiel
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pgen.1009224

Identifying drug targets for neurological and psychiatric disease via genetics and the brain transcriptome
Cited by: 35
Author(s): Denis Baird, Yushi Liu, Jie Zheng, Solveig K. Sieberts, Thanneer M. Perumal, Benjamin Elsworth, Tom G Richardson, Chia Yen Chen, Minerva M. Carrasquillo, Mariet Allen, Joseph S. Reddy, Philip L. De Jager, Nilüfer Ertekin-Taner, Lara M. Mangravite, Benjamin A. Logsdon, Karol Estrada, Philip Haycock, Gibran Hemani, Heiko Runz, George Davey Smith, Tom R. Gaunt
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pgen.0020160

Constitutive Nucleosome Depletion and Ordered Factor Assembly at the GRP78 Promoter Revealed by Single Molecule Footprinting
Cited by: 64
Author(s): Einav Nili Gal‐Yam, Shinwu Jeong, Amos Tanay, Gerda Egger, Amy Lee, Peter A. Jones
Software Mentions: 1
Published: about 20 years ago

10.1371/journal.pgen.1003230

HIF- and Non-HIF-Regulated Hypoxic Responses Require the Estrogen-Related Receptor in Drosophila melanogaster
Cited by: 89
Author(s): Yan Li, Divya Padmanabha, Luciana Boffoni Gentile, Catherine I. Dumur, Robert B. Beckstead, Keith D. Baker
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pntd.0008869

Long-read RNA sequencing of human and animal filarial parasites improves gene models and discovers operons
Cited by: 8
Author(s): Nicolas J Wheeler, Paul M. Airs, Mostafa Zamanian
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pntd.0000807

Metabolic Changes Reveal the Development of Schistosomiasis in Mice
Cited by: 54
Author(s): Junfang Wu, Wenxin Xu, Zhenping Ming, Hui-Fen Dong, Huiru Tang, Yulan Wang
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0049694

Genetic Variation in the Epidermal Transglutaminase Genes Is Not Associated with Atopic Dermatitis
Cited by: 8
Author(s): Agne Liedén, M Winge, Annika Sääf, Ingrid Kockum, Elisabeth Ekelund, Elke Rodríguez, Regina Fölster‐Holst, André Franke, Thomas Illig, Maria Tengvall-Linder, Hansjörg Baurecht, Stephan Weidinger, Carl-Fredrik Wahlgren, Magnus Nordenskjöld, J. F. N. Bradley
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0207803

Modelling the impact of changes in the extracellular environment on the cytosolic free NAD+/NADH ratio during cell culture
Cited by: 8
Author(s): Ross A. Kelly, Joseph Leedale, Andy Harrell, Daniel A. Beard, Laura E. Randle, Amy E. Chadwick, Steven D. Webb
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0031061

Long-Term Gene Therapy Causes Transgene-Specific Changes in the Morphology of Regenerating Retinal Ganglion Cells
Cited by: 40
Author(s): Jennifer Rodger, Eleanor Drummond, Mats Hellström, Donald Robertson, Alan R. Harvey
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0240986

Prediction of severity and subtype of fibrosing disease using model informed by inflammation and extracellular matrix gene index
Cited by: 0
Author(s): Amin Cheikhi, Zariel I. Johnson, Dana R. Julian, Sarah Wheeler, Carol Feghali‐Bostwick, Yvette P. Conley, James Lyons‐Weiler, Cecelia C. Yates
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0226993

A quantitative engineering study of ecosystem robustness using thermodynamic power cycles as case studies
Cited by: 4
Author(s): Varuneswara Panyam
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0106735

Coordinate Based Meta-Analysis of Functional Neuroimaging Data Using Activation Likelihood Estimation; Full Width Half Max and Group Comparisons
Cited by: 18
Author(s): Christopher R. Tench, Radu Tanasescu, Dorothee P. Auer, William J. Cottam, Cris S. Constantinescu
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0009913

The Role of NF-κB and H3K27me3 Demethylase, Jmjd3, on the Anthrax Lethal Toxin Tolerance of RAW 264.7 Cells
Cited by: 32
Author(s): Nando Dulal Das, Kyoung Hwa Jung, Young Gyu Chai
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0100833

Evaluation of a New Method of Fossil Retrodeformation by Algorithmic Symmetrization: Crania of Papionins (Primates, Cercopithecidae) as a Test Case
Cited by: 27
Author(s): Melissa Tallman, Nina Amenta, Eric Delson, Stephen R. Frost, Deboshmita Ghosh, Zachary S. Klukkert, Andrea Morrow, G. J. Sawyer
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0157775

ATP-Based Ratio Regulation of Glucose and Xylose Improved Succinate Production
Cited by: 15
Author(s): Fengyu Zhang, Jiaojiao Li, Huaiwei Liu, Quanfeng Liang, Qingsheng Qi
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0122325

Gene-Based Mapping and Pathway Analysis of Metabolic Traits in Dairy Cows
Cited by: 22
Author(s): Ngoc-Thuy Ha, Josef Johann Gross, Annette van Dorland, Jens Tetens, Georg Thaller, Martin Schlather, Rupert M. Bruckmaier, Henner Simianer
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0055947

The Role of Neprilysin in Regulating the Hair Cycle
Cited by: 5
Author(s): Naoko Morisaki, Atsushi Ohuchi, Shigeru Moriwaki
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0029411

Age-Related Neural Dedifferentiation in the Motor System
Cited by: 115
Author(s): Joshua Carp, Joonkoo Park, Andrew Hebrank, Denise C. Park, Thad A. Polk
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0079195

Systematic Construction of Kinetic Models from Genome-Scale Metabolic Networks
Cited by: 108
Author(s): Natalie J. Stanford, Timo Lubitz, Kieran Smallbone, Edda Klipp, Pedro Mendes, Wolfram Liebermeister
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0142806

SWI/SNF Subunits SMARCA4, SMARCD2 and DPF2 Collaborate in MLL-Rearranged Leukaemia Maintenance
Cited by: 19
Author(s): V. Adam Cruickshank, Patrycja Sroczyńska, Aditya Sankar, Satoru Miyagi, Carsten Friis Rundsten, Jens Vilstrup Johansen, Kristian Helin
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0154834

Feasibility, Reliability and Predictive Value Of In-Ambulance Heart Rate Variability Registration
Cited by: 8
Author(s): Laetitia Yperzeele, Robbert-Jan Van Hooff, Ann De Smedt, Guy Nagels, Ives Hubloue, Jacques De Keyser, Raf Brouns
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0110299

Gene Profiling of Postnatal Mfrprd6 Mutant Eyes Reveals Differential Accumulation of Prss56, Visual Cycle and Phototransduction mRNAs
Cited by: 26
Author(s): Ramani Soundararajan, Won Seok Jung, Timothy M. Stearns, Jeremy R. Charette, Wanda L. Hicks, Gayle B. Collin, Jürgen Κ. Naggert, Mark P. Krebs, Patsy M. Nishina
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0029804

Functional Relationship between Skull Form and Feeding Mechanics in Sphenodon, and Implications for Diapsid Skull Development
Cited by: 29
Author(s): Neil Curtis, Marc E. H. Jones, Jian Shi, Paul O’Higgins, SE Evans, Michael J. Fagan
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0143184

Work Disability among Employees with Diabetes: Latent Class Analysis of Risk Factors in Three Prospective Cohort Studies
Cited by: 14
Author(s): Marianna Virtanen, Jussi Vahtera, Jenny Head, Rosemary Dray‐Spira, Annaleena Okuloff, Ádám G. Tabák, Marcel Goldberg, Jenni Ervasti, Markus Jokela, Archana Singh‐Manoux, Jaana Pentti, Marie Zins, Mika Kivimäki
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0043339

Increased Microglia/Macrophage Gene Expression in a Subset of Adult and Pediatric Astrocytomas
Cited by: 134
Author(s): Jane R. Engler, Aaron E. Robinson, Иван Смирнов, J. Graeme Hodgson, Mitchel S. Berger, Nalin Gupta, C. David James, Annette M. Molinaro, Joanna J. Phillips
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0123737

Is Strain Elastography (IO-SE) Sufficient for Characterization of Liver Lesions before Surgical Resection—Or Is Contrast Enhanced Ultrasound (CEUS) Necessary?
Cited by: 9
Author(s): Ernst Michael Jung, Natascha Platz Batista da Silva, Woo Kyung Jung, S. Farkas, Christian Stroszczynski, Janine Rennert
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0126759

A Systematic Review and Meta-Analysis of the Effect of Short Birth Interval on Infant Mortality in Ethiopia
Cited by: 35
Author(s): Abel Fekadu Dadi
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0146931

A Novel High Content Imaging-Based Screen Identifies the Anti-Helminthic Niclosamide as an Inhibitor of Lysosome Anterograde Trafficking and Prostate Cancer Cell Invasion
Cited by: 28
Author(s): Magdalena L. Circu, Samantha S. Dykes, Jennifer L. Carroll, Kinsey Kelly, Floyd Galiano, Adam H. Greer, James A. Cardelli, Hazem El-Osta
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0028206

Structural Position Correlation Analysis (SPCA) for Protein Family
Cited by: 1
Author(s): Qiang Du, Meng Ju, Chenghua Wang, Si-Yu Long, Ribo Huang
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0166422

Gasdermin C Is Upregulated by Inactivation of Transforming Growth Factor β Receptor Type II in the Presence of Mutated Apc, Promoting Colorectal Cancer Proliferation
Cited by: 141
Author(s): Masashi Miguchi, Takao Hinoi, Manabu Shimomura, Tomohiko Adachi, Yasufumi Saito, Hiroaki Niitsu, Mitsugu Kochi, Haruki Sada, Yusuke Sotomaru, Tsuneo Ikenoue, Kunitoshi Shigeyasu, Kohji Tanakaya, Yasuhiko Kitadai, Kazuhiro Sentani, Naohide Oue, Wataru Yasui, Hideki Ohdan
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0073230

A Helicopter Perspective on TB Biomarkers: Pathway and Process Based Analysis of Gene Expression Data Provides New Insight into TB Pathogenesis
Cited by: 84
Author(s): Simone A. Joosten, Helen A. Fletcher, Tom H. M. Ottenhoff
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0179758

Endothelial angiogenesis is directed by RUNX1T1-regulated VEGFA, BMP4 and TGF-β2 expression
Cited by: 21
Author(s): Ko Hsun Liao, Shing Jyh Chang, Hsin Chuan Chang, Chen Li Chien, Tsung Hui Huang, Te Chia Feng, Wen Wei Lin, Chuan Chi Shih, Muh Hwa Yang, Shung Haur Yang, Chi Lin, Wei Lun Hwang, Oscar K. Lee
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0209652

Transcriptomic and proteomic host response to Aspergillus fumigatus conidia in an air-liquid interface model of human bronchial epithelium
Cited by: 22
Author(s): Amreen Toor, Luka Culibrk, Gurpreet K. Singhera, Kyung‐Mee Moon, Anna Prudova, Leonard J. Foster, Margo M. Moore, Delbert R. Dorscheid, Scott J. Tebbutt
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0167634

K-shuff: A Novel Algorithm for Characterizing Structural and Compositional Diversity in Gene Libraries
Cited by: 7
Author(s): Kamlesh Jangid, Ming‐Hung Kao, Aishwarya Lahamge, Mark A. Williams, Stephen L. Rathbun, William B. Whitman
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0229458

How to improve users’ intentions to continued usage of shared bicycles: A mixed method approach
Cited by: 12
Author(s): Zhan-You Wang, Demin Han, Yaopei Zhao
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0169253

Multiband multi-echo imaging of simultaneous oxygenation and flow timeseries for resting state connectivity
Cited by: 22
Author(s): Alexander D. Cohen, Andrew S. Nencka, R. Marc Lebel, Yan Wang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0165899

Dynamical Model of Drug Accumulation in Bacteria: Sensitivity Analysis and Experimentally Testable Predictions
Cited by: 8
Author(s): Vesselinova Neda, Boian S. Alexandrov, Michael E. Wall
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0099380

Evaluation of Bias-Variance Trade-Off for Commonly Used Post-Summarizing Normalization Procedures in Large-Scale Gene Expression Studies
Cited by: 14
Author(s): Xing Qiu, Rui Hu, Zhixin Wu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0196667

Epiisopilosine alkaloid has activity against Schistosoma mansoni in mice without acute toxicity
Cited by: 30
Author(s): Maria Adelaide Guimarães, Rosimeire Nunes de Oliveira, Rafael Menck de Almeida, Ana Carolina Mafud, Ana L V Sarkis, Rayane Ganassin, Marcos Da Silva, Daniel B. Roquini, Leiz Maria Costa Véras, Tânia Cristina Higashi Sawada, Cristina Dislich Röpke, Luís Alexandre Muehlmann, Graziella Anselmo Joanitti, Selma Aparecida Souza Kückelhaus, Silmara Marques Allegretti, Yvonne P. Mascarenhas, Josué de Moraes, José Roberto S. A. Leite
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0211373

Homology analysis of malware based on ensemble learning and multifeatures
Cited by: 11
Author(s): Di Xue, Jingmei Li, Weifei Wu, Qiao Tian, J. X. Wang
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0178819

Bioelectrical impedance vector analysis (BIVA) for measuring the hydration status in young elite synchronized swimmers
Cited by: 40
Author(s): Marta Carrasco-Marginet, Jorge Castizo-Olier, Lara Rodríguez-Zamora, Xavier Iglesias, Ferrán A. Rodríguez, Diego Chaverri, Daniel Brotons, Alfredo Irurtia
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0178271

Characterization of plasma metal profiles in Alzheimer’s disease using multivariate statistical analysis
Cited by: 20
Author(s): Guan Chen, Rui Dang, Yu Cui, Liyan Liu, Xiaobei Chen, Xiaoyu Wang, Jingli Zhu, Donggang Li, Junwei Li, Decai Wang
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0067455

Phenotypic Variation across Chromosomal Hybrid Zones of the Common Shrew (Sorex araneus) Indicates Reduced Gene Flow
Cited by: 24
Author(s): P. David Polly, Andrey Polyakov, V. B. Ilyashenko, S. S. Onischenko, Thomas A. White, Н. А. Щипанов, Н. Ш. Булатова, Svetlana V. Pavlova, Pavel M. Borodin, Jeremy B. Searle
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0090593

Plasticity in the Macromolecular-Scale Causal Networks of Cell Migration
Cited by: 23
Author(s): John G. Lock, Mehrdad Jafari Mamaghani, Hamdah Shafqat-Abbasi, Xiaoyi Gong, Joanna Tyrcha, Staffan Strömblad
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0118262

OVCAR-3 Spheroid-Derived Cells Display Distinct Metabolic Profiles
Cited by: 27
Author(s): Kathleen A. Vermeersch, Limin Wang, Roman Mezencev, John F. McDonald, Mark P. Styczynski
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0187447

The treatment of femoral neck fracture using VEGF-loaded nanographene coated internal fixation screws
Cited by: 2
Author(s): Shuo Li, Yuan Hou, Jianfeng Pan, Fan Yan Wei, Liang Zhu, Zuoqin Yan, Changan Guo
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0258051

Alteration of lung tissues proteins in birch pollen induced asthma mice before and after SCIT
Cited by: 3
Author(s): Zhibo Xie, Hui Sun, Xiaogang Li, Wei Sun, Jie Yin
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0168036

Heterogeneous Niche Activity of Ex-Vivo Expanded MSCs as Factor for Variable Outcomes in Hematopoietic Recovery
Cited by: 14
Author(s): Jung Ho Kim, Ho-Sun Lee, Ho Jin Choi, Jina Kim, In-Sun Chu, Sun‐Hee Leem, Il‐Hoan Oh
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0185006

A novel hazard assessment method for biomass gasification stations based on extended set pair analysis
Cited by: 14
Author(s): Fang Yan, Kaili Xu, Deshun Li, Zhikai Cui
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0179708

Dynamic properties of successful smiles
Cited by: 28
Author(s): Nathaniel E. Helwig, Nick Sohre, Mark R. Ruprecht, Stephen J. Guy, Sofía Lyford-Pike
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0027786

Using Amino Acid Correlation and Community Detection Algorithms to Identify Functional Determinants in Protein Families
Cited by: 25
Author(s): Lucas Bleicher, Ney Lemke, R.C. Garratt
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0028766

Protein 3D Structure Computed from Evolutionary Sequence Variation
Cited by: 1,017
Author(s): Debora S. Marks, Lucy Colwell, Robert P. Sheridan, Thomas A. Hopf, Andrea Pagnani, Riccardo Zecchina, Chris Sander
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0118927

Dysregulation of X Chromosome Inactivation in High Grade Ovarian Serous Adenocarcinoma
Cited by: 16
Author(s): Jun Kang, Hee Jin Lee, Jiyoung Kim, Jae Jun Lee, Lee-So Maeng
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0076908

Extracellular High Mobility Group Box 1 Plays a Role in the Effect of Bone Marrow Mononuclear Cell Transplantation for Heart Failure
Cited by: 8
Author(s): Masahiro Kaneko, Yasunori Shintani, Takashi Narita, Chiho Ikebe, Nobuko Tano, Kenichi Yamahara, Satsuki Fukushima, Steven R. Coppen, Ken Suzuki
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0149859

Sterile α Motif Domain Containing 9 Is a Novel Cellular Interacting Partner to Low-Risk Type Human Papillomavirus E6 Proteins
Cited by: 9
Author(s): Jia Wang, Crystal Dupuis, Stephen K. Tyring, Michael P. Underbrink
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0034474

AMPA Receptor Activation Causes Silencing of AMPA Receptor-Mediated Synaptic Transmission in the Developing Hippocampus
Cited by: 10
Author(s): Pontus Wasling, Joakim Strandberg, Eric Hanse
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0001965

EWS/FLI Mediates Transcriptional Repression via NKX2.2 during Oncogenic Transformation in Ewing's Sarcoma
Cited by: 132
Author(s): Leah A. Owen, Ashley A. Kowalewski, Stephen L. Lessnick
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0065307

Differential Mechanisms of Activation of the Ang Peptide Receptors AT1, AT2, and MAS: Using In Silico Techniques to Differentiate the Three Receptors
Cited by: 12
Author(s): Jeremy W. Prokop, Robson A.S. Santos, Amy Milsted
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0030533

A Biodiverse Rich Environment Does Not Contribute to a Better Diet: A Case Study from DR Congo
Cited by: 74
Author(s): Céline Termote, Marcel Bwama Meyi, Benoît Dhed’a Djailo, Lieven Huybregts, Carl Lachat, Patrick Kolsteren, Patrick Van Damme
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0206150

Differences in sperm protein abundance and carbonylation level in bull ejaculates of low and high quality
Cited by: 15
Author(s): Agnieszka Mostek, Błażej Westfalewicz, Mariola Słowińska, Mariola A. Dietrich, Sylwia Judycka, Andrzej Ciereszko
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0020252

Systemic Analysis of Heat Shock Response Induced by Heat Shock and a Proteasome Inhibitor MG132
Cited by: 35
Author(s): Hee Jung Kim, Hye Joon Joo, Yung Hee Kim, Soyeon Ahn, Jun Chang, Kyu Baek Hwang, Dong Hee Lee, Kong Joo Lee
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0008834

Molecular Interaction Studies of Trimethoxy Flavone with Human Serum Albumin
Cited by: 97
Author(s): Mahesh Gokara, Babu Sudhamalla, Amooru G. Damu, Rajagopal Subramanyam
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0191190

Demographic and genetic viability of a medium-sized ground-dwelling mammal in a fire prone, rapidly urbanizing landscape
Cited by: 16
Author(s): Cristina E. Ramalho, Kym Ottewell, Brian Chambers, Colin J. Yates, Barbara A. Wilson, Roberta Bencini, Geoff Barrett
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0192297

Molecular action of isoflavone genistein in the human epithelial cell line HaCaT
Cited by: 21
Author(s): Elwira Smolińska, Marta Moskot, Joanna Jakóbkiewicz‐Banecka, Grzegorz Węgrzyn, Bogdan Banecki, Aneta Szczerkowska-Dobosz, Dorota Purzycka-Bohdan, Magdalena Gabig-Cimińska
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0092970

Mass Spectrometry-Based Comparative Sequence Analysis for the Genetic Monitoring of Influenza A(H1N1)pdm09 Virus
Cited by: 2
Author(s): Jairo Gooskens, Jessika C. Zevenhoven-Dobbe, Eric C. J. Claas, Aloys C.M. Kroes, Clara C. Posthuma
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0115791

A Minimal Dose of Electrically Induced Muscle Activity Regulates Distinct Gene Signaling Pathways in Humans with Spinal Cord Injury
Cited by: 24
Author(s): Michael A. Petrie, Manish Suneja, Elizabeth A. Faidley, Richard K. Shields
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0138336

ERBB3 Positively Correlates with Intestinal Stem Cell Markers but Marks a Distinct Non Proliferative Cell Population in Colorectal Cancer
Cited by: 16
Author(s): Thierry Jardé, Lisa Kass, Margaret Staples, Helen E Lescesen, Peter Carne, Karen Oliva, Paul McMurrick, Helen E. Abud
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0110380

Diagnostics for Stochastic Genome-Scale Modeling via Model Slicing and Debugging
Cited by: 0
Author(s): Kevin Tsai, Chia Hui Chang
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0172430

Mesenchymal stromal cells (MSCs) induce ex vivo proliferation and erythroid commitment of cord blood haematopoietic stem cells (CB-CD34+ cells)
Cited by: 27
Author(s): Simone Perucca, Andrea Di Palma, Pier Paolo Piccaluga, Claudia Gemelli, Elisa Zoratti, Giulio Bassi, Edoardo Giacopuzzi, Andrea Lojacono, Giuseppe Borsani, Enrico Tagliafico, Maria Teresa Scupoli, Simona Bernardi, Camilla Zanaglio, Federica Cattina, Valeria Cancelli, Michele Malagola, Mauro Krampera, Mirella Marini, Camillo Almici, Sérgio Ferrari, Domenico Russo
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0148969

Inhibition of Plasminogen Activator Inhibitor-1 Attenuates Transforming Growth Factor-β-Dependent Epithelial Mesenchymal Transition and Differentiation of Fibroblasts to Myofibroblasts
Cited by: 54
Author(s): Keitaro Omori, Noboru Hattori, Tadashi Senoo, Yusuke Takayama, Takeshi Masuda, Toshikatsu Nakashima, Hiroshi Iwamoto, Kazunori Fujitaka, Hironobu Hamada, Nobuoki Kohno
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0073185

Association between Body Water Status and Acute Mountain Sickness
Cited by: 29
Author(s): Hannes Gatterer, Maria Wille, Martin Faulhaber, Henry C. Lukaski, Andreas Melmer, Christoph Ebenbichler, Martin Burtscher
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0039903

Design Constraints on a Synthetic Metabolism
Cited by: 9
Author(s): Tugce Bilgin, Andreas Wagner
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0026514

The Transcription Factors Snail and Slug Activate the Transforming Growth Factor-Beta Signaling Pathway in Breast Cancer
Cited by: 138
Author(s): Archana Dhasarathy, Dhiral Phadke, Deepak Mav, Ruchir Shah, Paul A. Wade
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0082825

Nutrigenomics of High Fat Diet Induced Obesity in Mice Suggests Relationships between Susceptibility to Fatty Liver Disease and the Proteasome
Cited by: 38
Author(s): Helen Waller-Evans, Christophe Hue, Jane Fearnside, Alice Rothwell, Helen Lockstone, Sophie Caldérari, Steven P. Wilder, Jean‐Baptiste Cazier, James A. Scott, Dominique Guyader
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0171595

Identification of shared risk loci and pathways for bipolar disorder and schizophrenia
Cited by: 74
Author(s): Andreas J. Forstner, Julian Hecker, Andrea Hofmann, Anna Maaser, Céline S. Reinbold, Thomas W. Mühleisen, Markus Leber, Jana Strohmaier, Franziska Degenhardt, Jens Treutlein, Manuel Mattheisen, Johannes Schumacher, Fabian Streit, Sandra Meier, Stefan Herms, Per Hoffmann, André Lacour, Stephanie H. Witt, Andreas Reif, Bertram Müller‐Myhsok, Susanne Lucae, Wolfgang Maier, Markus Schwarz, Helmut Vedder, Jutta Kammerer-Ciernioch, Andrea Pfennig, Michael Bauer, Martin Hautzinger, Susanne Moebus, Lorena M. Schenk, Sascha Fischer, Sugirthan Sivalingam, Piotr M. Czerski, Joanna Hauser, Jolanta Lissowska, Neonila Szeszenia-Dąbrowska, Paul Brennan, James McKay, Adam Wright, Philip B. Mitchell, Janice M. Fullerton, Peter R. Schofield, Grant W. Montgomery, Sarah E. Medland, Scott D. Gordon, Nicholas G. Martin, Valery N. Krasnov, Alexander Chuchalin, Gulja Babadjanova, Galina Pantelejeva, Л. И. Абрамова, Alexander S. Tiganov, Alexey Polonikov, Э. К. Хуснутдинова, Martin Alda, Cristiana Cruceanu, Guy A. Rouleau, Gustavo Turecki, Catherine Laprise, Fabio Rivas, Fermín Mayoral, Manolis Kogevinas, Maria Grigoroiu-Serbǎnescu, Tim Becker, Thomas G. Schulze, Marcella Rietschel, Sven Cichon, Heide Fier, Markus M. Nöthen
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0129139

Barratt Impulsivity and Neural Regulation of Physiological Arousal
Cited by: 28
Author(s): Sheng Zhang, Sien Hu, Jianping Hu, Po-Lun Wu, Herta H. Chao, Chiang‐Shan R. Li
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0015061

Role of Carbonic Anhydrase IV in the Bicarbonate-Mediated Activation of Murine and Human Sperm
Cited by: 41
Author(s): Petra M. Wandernoth, Michael Raubuch, Nadja Mannowetz, Holger M. Becker, Joachim W. Deitmer, William S. Sly, Gunther Wennemuth
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0199970

18F-FDG PET intensity correlates with a hypoxic gene signature and other oncogenic abnormalities in operable non-small cell lung cancer
Cited by: 12
Author(s): Brendan T. Heiden, Guoan Chen, Matthew Hermann, Richard K. Brown, Mark B. Orringer, Jules Lin, Andrew C. Chang, Philip W. Carrott, William R. Lynch, Lili Zhao, David G. Beer, Rishindra M. Reddy
Software Mentions: 1
Published: over 8 years ago