Ecosyste.ms: Papers

10.18632/oncotarget.15688

BRCA1 controls the cell division axis and governs ploidy and phenotype in human mammary cells
Cited by: 14
Author(s): Zhengcheng He, Nagarajan Kannan, Oksana Nemirovsky, Helen Chen, Marisa Connell, Brian J. Taylor, Jihong Jiang, Linda M. Pilarski, Markus Fleisch, Dieter Niederacher, Miguel Ángel Pujana, Connie J. Eaves, Christopher A. Maxwell
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.17172

Rewiring carbohydrate catabolism differentially affects survival of pancreatic cancer cell lines with diverse metabolic profiles
Cited by: 17
Author(s): Tiziana Tataranni, Francesca Agriesti, Vitalba Ruggieri, Carmela Mazzoccoli, Vittorio Simeon, Ilaria Laurenzana, Rosella Scrima, Valerio Pazienza, Nazzareno Capitanio, Cláudia Piccoli
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.17893

Advances in single-cell RNA sequencing and its applications in cancer research
Cited by: 64
Author(s): Sibo Zhu, Tao Qing, Yuanting Zheng, Li Jin, Leming Shi
Software Mentions: 1
Published: over 7 years ago

10.1186/s12014-018-9196-y

Comprehensive proteome analysis of nasal lavage samples after controlled exposure to welding nanoparticles shows an induced acute phase and a nuclear receptor, LXR/RXR, activation that influence the status of the extracellular matrix
Cited by: 4
Author(s): Neserin Ali, Stefan Ljunggren, Helén Karlsson, Aneta Wierzbicka, Joakim Pagels, Christina Isaxon, Anders Gudmundsson, Jenny Rissler, Jörn Nielsen, Christian Lindh, Monica Kåredal
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.20748

Plasma-derived extracellular vesicle proteins as a source of biomarkers for lung adenocarcinoma
Cited by: 59
Author(s): Jody Vykoukal, Nan Sun, Clemente Aguilar-Bonavides, Hiroyuki Katayama, Ichidai Tanaka, Johannes F. Fahrmann, Michela Capello, Junya Fujimoto, Mitzi Aguilar, Ignacio I. Wistuba, Ayumu Taguchi, Edwin J. Ostrin, Samir Hanash
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.22604

The implication from RAS/RAF/ERK signaling pathway increased activation in epirubicin treated triple negative breast cancer
Cited by: 23
Author(s): Jianbo Huang, Qingqing Luo, Yun Xiao, Hongyuan Li, Lingna Kong, Guosheng Ren
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.23408

Identification of a novel MYO7A mutation in Usher syndrome type 1
Cited by: 8
Author(s): Cheng Ling, Hongsong Yu, Yan Jiang, Juan He, Sisi Pu, Xin Li, Li Zhang
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.23355

Predictive factors for 6 <i>vs</i> 12 cycles of Folfiri-Bevacizumab in metastatic colorectal cancer
Cited by: 1
Author(s): Vincenzo Formica, Maria Teresa Ionta, B. Massidda, Giacomo Vessia, Luigi Maiorino, Rossana Casaretti, D. Natale, Giuseppe Barberis, Gianfranco Filippelli, Ettore Greco, Livio Blasi, S. Mancarella, Anna Russo, Enrico Barbato, Liberato Di Lullo, Mario Roselli
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.24398

Using computer assisted image analysis to determine the optimal Ki67 threshold for predicting outcome of invasive breast cancer
Cited by: 11
Author(s): Timothy Kwang Yong Tay, Aye Aye Thike, Nirmala Pathmanathan, Ana Richelia Jara-Lazaro, Jabed Iqbal, Adeline Shi Hui Sng, Heng Seow Ye, Jeffrey Chun Tatt Lim, Valerie Cui Yun Koh, Jane Sie Yong Tan, Joe Yeong, Zi Long Chow, Hui Hua Li, Chee Leong Cheng, Puay Hoon Tan
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.26863

Differential microglia and macrophage profiles in human IDH-mutant and -wild type glioblastoma
Cited by: 57
Author(s): Candice C. Poon, Paul M. Gordon, Katherine Liu, Runze Yang, Susobhan Sarkar, Reza Mirzaei, Shiekh Tanveer Ahmad, Martha Hughes, V. Wee Yong, John J. Kelly
Software Mentions: 1
Published: over 5 years ago

10.1186/s13018-019-1445-x

Artesunate prevents knee intraarticular adhesion via PRKR-like ER kinase (PERK) signal pathway
Cited by: 6
Author(s): Hui Chen, Tao Jin, Jingcheng Wang, Lianqi Yan
Software Mentions: 1
Published: almost 5 years ago

10.3390/jpm11020155

Treatment-Resistant Depression Revisited: A Glimmer of Hope
Cited by: 37
Author(s): Angelos Halaris, Emilie Sohl, Elizabeth A. Whitham
Software Mentions: 1
Published: almost 4 years ago

10.3390/jpm11080739

High BMI1 Expression with Low CD8+ and CD4+ T Cell Activity Could Promote Breast Cancer Cell Survival: A Machine Learning Approach
Cited by: 1
Author(s): Yun Jae Chung, Kyueng‐Whan Min, Dong-Hoon Kim, Byoung Kwan Son, Sung Il Im, Seoung Wan Chae, Mi Jung Kwon
Software Mentions: 1
Published: over 3 years ago

10.1515/med-2020-0128

GABRD promotes progression and predicts poor prognosis in colorectal cancer
Cited by: 17
Author(s): Gengming Niu, Li Deng, Xiaotian Zhang, Zhiqing Hu, Shanliang Han, Ke Xu, Runqi Hong, He Meng, Chongwei Ke
Software Mentions: 1
Published: almost 5 years ago

10.6028/jres.093.035

Evolutionary factor-analysis
Cited by: 6
Author(s): Kathleen Schostack, P. P. Parekh, Shivam Patel, Edmund R. Malinowski
Software Mentions: 1
Published: over 36 years ago

10.1186/1750-1172-7-103

Four new loci associations discovered by pathway-based and network analyses of the genome-wide variability profile of Hirschsprung’s disease
Cited by: 7
Author(s): Raquel M. Fernández, Marta Bleda, Rocío Núñez-Torres, Ignacio Medina, Berta Lasa, Luz García-Alonso, Ana Torroglosa, Martina Marbá, María del Valle Enguix-Riego, David Montaner, Guillermo Antiñolo, Joaquı́n Dopazo, Salud Borrego
Software Mentions: 1
Published: almost 12 years ago

10.1002/jts.22333

Treatment Efficacy for Veterans With Posttraumatic Stress Disorder: Latent Class Trajectories of Treatment Response and Their Predictors
Cited by: 31
Author(s): Dominic Murphy, Kirsten V. Smith
Software Mentions: 1
Published: about 6 years ago

10.1007/s11524-014-9885-4

Prevalence of HIV, Syphilis, and Other Sexually Transmitted Infections among MSM from Three Cities in Panama
Cited by: 13
Author(s): Shilpa Hakre, Griselda Arteaga, Aurelio E. Núñez, Nelson Arambu, Bulbulgul Aumakhan, Meilin Liu, Sheila A. Peel, Juan Miguel Pascale, Paul T. Scott
Software Mentions: 1
Published: over 10 years ago

10.1002/nop2.928

The impact of COVID‐19 on work, training and well‐being experiences of nursing associates in England: A cross‐sectional survey
Cited by: 13
Author(s): Rachel King, Tony Ryan, Michaela Senek, Emily Wood, Brian F. Taylor, Angela Tod, Ashfaque Ahmed Talpur, Steve Robertson
Software Mentions: 1
Published: over 3 years ago

10.1523/ENEURO.0057-21.2021

Tracking Single Molecule Dynamics in the Adult<i>Drosophila</i>Brain
Cited by: 4
Author(s): Adam Hines, Bruno van Swinderen
Software Mentions: 1
Published: over 3 years ago

10.1186/1475-2891-12-158

The metabolic signature associated with the Western dietary pattern: a cross-sectional study
Cited by: 73
Author(s): Annie Bouchard-Mercier, Iwona Rudkowska, Simone Lemieux, Patrick Couture, Marie‐Claude Vohl
Software Mentions: 1
Published: almost 11 years ago

10.1186/1475-2891-10-35

A practical guide to bioelectrical impedance analysis using the example of chronic obstructive pulmonary disease
Cited by: 91
Author(s): Anja Walter-Kroker, Axel Kroker, Muriel Mattiucci-Guehlke, Thomas Glaab
Software Mentions: 1
Published: over 13 years ago

10.3390/nu13020460

Feeding Your Himalayan Expedition: Nutritional Signatures and Body Composition Adaptations of Trekkers and Porters
Cited by: 4
Author(s): Danilo Bondi, Anna Maria Aloisi, Tiziana Pietrangelo, Raffaela Piccinelli, Cinzia Le Donne, Tereza Jandova, Stefano Pieretti, Mattia Taraborrelli, Carmen Santangelo, Bruna Lattanzi, Vittore Verratti
Software Mentions: 1
Published: almost 4 years ago

10.3390/nu9070773

Quercetin and Green Tea Extract Supplementation Downregulates Genes Related to Tissue Inflammatory Responses to a 12-Week High Fat-Diet in Mice
Cited by: 37
Author(s): Lynn Cialdella‐Kam, Sujoy Ghosh, Mary Pat Meaney, Amy M. Knab, R. Andrew Shanely, David C. Nieman
Software Mentions: 1
Published: over 7 years ago

10.3390/nu13010194

The Effect of Gum Arabic (Acacia senegal) on Cardiovascular Risk Factors and Gastrointestinal Symptoms in Adults at Risk of Metabolic Syndrome: A Randomized Clinical Trial
Cited by: 13
Author(s): Amjad H. Jarrar, Lily Stojanovska, Vasso Apostolopoulos, Jack Feehan, Malik Bataineh, Leila Cheikh Ismail, Ayesha S. Al Dhaheri
Software Mentions: 1
Published: almost 4 years ago

10.3390/nu13093026

Metabolome Characteristics of Liver Autophagy Deficiency under Starvation Conditions in Infancy
Cited by: 1
Author(s): Kazuhito Sekiguchi, Hiroaki Miyahara, Masanori Inoue, Kyoko Kiyota, Kumiko Sakai, Toshikatsu Hanada, Kenji Ihara
Software Mentions: 1
Published: about 3 years ago

10.3390/ijms20092242

Transcriptomic Analysis Reveals Priming of The Host Antiviral Interferon Signaling Pathway by Bronchobini® Resulting in Balanced Immune Response to Rhinovirus Infection in Mouse Lung Tissue Slices
Cited by: 6
Author(s): Stella Marie Reamon-Buettner, Monika Niehof, Natalie Hirth, Olga Danov, Helena Obernolte, Armin Braun, Jürgen Warnecke, Katherina Sewald, Sabine Wronski
Software Mentions: 1
Published: over 5 years ago

10.14573/altex.1710141

Computational approaches to chemical hazard assessment
Cited by: 30
Author(s): Thomas Luechtefeld
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40478-021-01245-z

Importance of extracellular vesicle secretion at the blood–cerebrospinal fluid interface in the pathogenesis of Alzheimer’s disease
Cited by: 24
Author(s): Charysse Vandendriessche, Sriram Balusu, Caroline Van Cauwenberghe, Marjana Brkić, Marie J. Pauwels, Nele Plehiers, Arnout Bruggeman, P Dujardin, Griet Van Imschoot, Elien Van Wonterghem, An Hendrix, Femke Baeke, Riet De Rycke, Kris Gevaert, Roosmarijn E. Vandenbroucke
Software Mentions: 1
Published: over 3 years ago

10.15171/apb.2019.011

In Silico Exploration of Aryl Halides Analogues as CheckpointKinase 1 Inhibitors by Using 3D QSAR, Molecular Docking Study,and ADMET Screening
Cited by: 15
Author(s): Adib Ghaleb, Adnane Aouidate, Mohammed Bouachrine, Tahar Lakhlifi, Abdelouahid Sbai
Software Mentions: 1
Published: almost 6 years ago

10.1002/advs.201900782

Genome‐Wide CRISPR‐Cas9 Screening Identifies NF‐κB/E2F6 Responsible for EGFRvIII‐Associated Temozolomide Resistance in Glioblastoma
Cited by: 43
Author(s): Kai Huang, Xing Liu, Yansheng Li, Qixue Wang, Junhu Zhou, Yunfei Wang, Feng Dong, Chao Yang, Zimin Sun, Chuan Fang, Chaoyong Liu, Yanli Tan, Xudong Wu, Tao Jiang, Chunsheng Kang
Software Mentions: 1
Published: over 5 years ago

10.1002/advs.202004831

Extracellular Vesicles from Child Gut Microbiota Enter into Bone to Preserve Bone Mass and Strength
Cited by: 61
Author(s): Yu Liu, Chun‐Yuan Chen, Zhengzhao Liu, Zhenguo Luo, Shan‐Shan Rao, Ling Jin, Tengfei Wan, Yue Tao, Yuyong Tan, Hao Yin, Fei Yang, Feiyu Huang, Jing Guo, Yiyi Wang, Kun Xia, Jia Cao, Zhenxing Wang, Chengyu Hong, Mingjie Luo, Xiaozhou Hu, Yiwei Liu, Wei Du, Jian Luo, Yingyao Hu, Yan Zhang, Jie Huang, Hong‐Ming Li, Ben Wu, Hao‐Ming Liu, Tuan‐Hui Chen, Yuxuan Qian, Youyou Li, Shi‐Kai Feng, Yang Chen, Luyue Qi, Ran Xu, Siyuan Tang, Hui Xie
Software Mentions: 1
Published: almost 4 years ago

10.1002/advs.201700392

Characterization of HIF‐1α/Glycolysis Hyperactive Cell Population via Small‐Molecule‐Based Imaging of Mitochondrial Transporter Activity
Cited by: 22
Author(s): Yang Wang, Xian Liao, Jianping Sun, Bin Yi, Shenglin Luo, Tao Liu, Xu Tan, Dengqun Liu, Zelin Chen, Xin Wang, Shi Chen
Software Mentions: 1
Published: almost 7 years ago

10.4102/phcfm.v12i1.2390

Patient-centred care: The patients’ perspective – A mixed-methods pilot study
Cited by: 0
Author(s): Roseanne E. Turner, Elize Archer
Software Mentions: 1
Published: about 4 years ago

10.18632/aging.103798

TILRR (FREM1 isoform 2) is a prognostic biomarker correlated with immune infiltration in breast cancer
Cited by: 8
Author(s): Xin Xu, Wenjing Guo, Shihua Pan, Ying Zhang, Fenglin Gao, Jiangtao Wang, Sheng Zhang, He-Ying Li, Wei Ren, Xiao Zhang
Software Mentions: 1
Published: about 4 years ago

10.18632/aging.203269

Bioinformatics analysis of the role of CXC ligands in the microenvironment of head and neck tumor
Cited by: 7
Author(s): Fengyang Jing, Jian-Xiong Wang, Liming Zhou, Yujie Ning, Shengqian Xu, Guoping Zhu
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.203146

A risk signature of four aging-related genes has clinical prognostic value and is associated with a tumor immune microenvironment in glioma
Cited by: 9
Author(s): Haitao Luo, Chuming Tao, Xiaoyan Long, Kai Huang, Xiang Yang Zhu
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.103943

TCGA and ESTIMATE data mining to identify potential prognostic biomarkers in HCC patients
Cited by: 8
Author(s): Guolin He, Shunjun Fu, Li Yang, Ting Li, Purong Mei, Lei Feng, Lei Cai, Yuan Cheng, Chengyu Zhou, Yujun Tang, Wenbin Huang, Haiyan Liu, Bohong Cen, Mingxin Pan, Yi Gao
Software Mentions: 1
Published: about 4 years ago

10.18632/aging.102188

Efficacy and safety of neoadjuvant chemotherapy regimens for triple-negative breast cancer: a network meta-analysis
Cited by: 21
Author(s): Yunhai Li, Dong Yang, Ping Chen, Xuedong Yin, Jiazheng Sun, Hongzhong Li, Guosheng Ren
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.202886

Identification of a mesenchymal-related signature associated with clinical prognosis in glioma
Cited by: 5
Author(s): Zhengwei Zhang, Jie Chen, Xiuhao Huo, Gang Zong, Kebing Huang, Meng Cheng, Libo Sun, Xiaoyu Yue, Erbao Bian, Bing Zhao
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.103141

Mitochondria-related miR-574 reduces sperm ATP by targeting ND5 in aging males
Cited by: 14
Author(s): Jinzhao Ma, Qiwei Chen, Shuxian Wang, Rujun Ma, Jun Jing, Yang Yang, Yuming Feng, Zhichuan Zou, Yu Zhang, Xie Ge, Tongmin Xue, Kuan Liang, Sanxing Cao, Dandan Wang, Li Chen, Bing Yao
Software Mentions: 1
Published: over 4 years ago

10.1111/acel.13383

Chronological and biological aging of the human left ventricular myocardium: Analysis of microRNAs contribution
Cited by: 3
Author(s): Estel Ramos-Marquès, Laura García-Mendívil, María Pérez-Zabalza, Hazel Santander-Badules, Sabarathinam Srinivasan, Juan Carlos Oliveros, Rafael Torres‐Pérez, Alberto Cebollada, José María Vallejo-Gil, Pedro Carlos Fresneda-Roldán, Javier Fañanás-Mastral, Manuel Vázquez-Sancho, Marta Matamala-Adell, Juan Fernando Sorribas-Berjón, Javier André Bellido-Morales, Francisco Javier Mancebón-Sierra, Alexánder Sebastián Vaca-Núñez, Carlos Ballester-Cuenca, Manuel Jiménez‐Navarro, José Manuel Villaescusa, Elisa Garrido-Huéscar, Margarita Segovia-Roldán, Aida Oliván-Viguera, Carlos Gómez-González, Gorka Muñíz, Emiliano Diez, Laura Ordovás, Esther Pueyo
Software Mentions: 1
Published: over 3 years ago

10.1111/acel.13460

Age patterns of intra‐pair DNA methylation discordance in twins: Sex difference in epigenomic instability and implication on survival
Cited by: 1
Author(s): Qihua Tan, Shuxia Li, Mette Sørensen, Marianne Nygaard, Jonas Mengel‐From, Kaare Christensen
Software Mentions: 1
Published: over 3 years ago

10.1111/acel.13253

Proteomic assessment of serum biomarkers of longevity in older men
Cited by: 9
Author(s): Eric S. Orwoll, Jack Wiedrick, Carrie M. Nielson, Jon Jacobs, Erin Baker, Paul Piehowski, Vladislav Petyuk, Yuqian Gao, Tujin Shi, Richard Smith, Douglas C. Bauer, Steven R. Cummings, Jodi Lapidus
Software Mentions: 1
Published: about 4 years ago

10.1186/s13015-016-0087-3

Enumeration of minimal stoichiometric precursor sets in metabolic networks
Cited by: 13
Author(s): Ricardo Andrade, Martin Wannagat, Cecília C. Klein, Vicente Acuña, Alberto Marchetti-Spaccamela, Paulo Vieira Milreu, Leen Stougie, Marie‐France Sagot
Software Mentions: 1
Published: about 8 years ago

10.1016/j.ajhg.2017.08.006

A Genome-wide Association Study of Dupuytren Disease Reveals 17 Additional Variants Implicated in Fibrosis
Cited by: 57
Author(s): Michael Ng, Dipti Thakkar, Lorraine Southam, Paul M. N. Werker, Roel A. Ophoff, Kerstin Becker, Michael Nothnagel, André Franke, Peter Nürnberg, Ana Isabel Espirito-Santo, David Izadi, Hans Christian Hennies, Jagdeep Nanchahal, Eleftheria Zeggini, Dominic Furniss
Software Mentions: 1
Published: about 7 years ago

10.1002/anie.201508983

A Simple Graphical Method to Determine the Order in Catalyst
Cited by: 278
Author(s): Jordi Burés
Software Mentions: 1
Published: almost 9 years ago

10.5713/ajas.20.0565

Relationships among bedding materials, bedding bacterial composition and lameness in dairy cows
Cited by: 10
Author(s): Han Li, Xiangming Wang, Yan Wu, Dingran Zhang, Hongyang Xu, Xiaoguang Xing
Software Mentions: 1
Published: about 3 years ago

10.3390/ani10050769

Serum Metabolomics Revealed the Differential Metabolic Pathway in Calves with Severe Clinical Diarrhea Symptoms
Cited by: 8
Author(s): Meizhou Huang, Dongan Cui, Xiaohu Wu, Hui Wang, Zuoting Yan, Xuezhi Ding, Shengyi Wang
Software Mentions: 1
Published: over 4 years ago

10.3390/ani11092681

Regional Differences in the Diets of Adélie and Emperor Penguins in the Ross Sea, Antarctica
Cited by: 1
Author(s): Seoyeon Hong, Jong‐Ku Gal, Bo‐Yeon Lee, Wuju Son, Jin-Woo Jung, Hyoung Sul La, Kyung‐Hoon Shin, Jeong-Hoon Kim, Sung Yong Ha
Software Mentions: 1
Published: about 3 years ago

10.3390/ani10081403

Luminal and Mucosal Microbiota of the Cecum and Large Colon of Healthy and Diarrheic Horses
Cited by: 24
Author(s): Luis Arroyo, Laura Rossi, Bruna Renata Farias dos Santos, Diego E. Gómez, Michael G. Surette, Márcio Paulino Costa
Software Mentions: 1
Published: over 4 years ago

10.1186/s12991-017-0136-4

The Greek-Orthodox version of the Brief Religious Coping (B-RCOPE) instrument: psychometric properties in three samples and associations with mental disorders, suicidality, illness perceptions, and quality of life
Cited by: 19
Author(s): Vassiliki Paika, Elias Andreoulakis, Elisavet Ntountoulaki, Dimitra Papaioannou, Konstantinos Kotsis, Vassiliki Siafaka, Konstantinos Ν. Fountoulakis, Kenneth I. Pargäment, André F. Carvalho, Thomas Hyphantis
Software Mentions: 1
Published: almost 8 years ago

10.1186/1744-859X-8-27

Treatment of psychotic symptoms in bipolar disorder with aripiprazole monotherapy: a meta-analysis
Cited by: 20
Author(s): Konstantinos Ν. Fountoulakis, Xénia Gonda, Eduard Vieta, Frank L. Schmidt
Software Mentions: 1
Published: almost 15 years ago

10.3390/antibiotics7020039

Unraveling Nutritional Regulation of Tacrolimus Biosynthesis in Streptomyces tsukubaensis through omic Approaches
Cited by: 17
Author(s): María Ordóñez-Robles, Fernando Santos-Beneit, Juan F. Martı́n
Software Mentions: 1
Published: over 6 years ago

10.3390/antiox10091489

Transcriptomics Underlying Pulmonary Ozone Pathogenesis Regulated by Inflammatory Mediators in Mice
Cited by: 4
Author(s): Hye‐Youn Cho, Anne Jedlicka, Frederick Hyunbin Chang, Jacqui Marzec, Alison K. Bauer, Steven R. Kleeberger
Software Mentions: 1
Published: about 3 years ago

10.3390/antiox10040518

Exploring Molecular Insights of Cereal Peptidic Antioxidants in Metabolic Syndrome Prevention
Cited by: 9
Author(s): Fred Kwame Ofosu, Dylis-Judith Fafa Mensah, ‪Eric Banan-Mwine Daliri, Deog‐Hwan Oh
Software Mentions: 1
Published: over 3 years ago

10.3390/antiox10050709

Delivery of Cinnamic Aldehyde Antioxidant Response Activating nanoParticles (ARAPas) for Vascular Applications
Cited by: 2
Author(s): Ana Cartaya, Halle Lutz, Sophie Maiocchi, Morgan Nalesnik, Edward Moreira Bahnson
Software Mentions: 1
Published: over 3 years ago

10.1128/AEM.00768-19

Chemical and Metabolic Controls on Dihydroxyacetone Metabolism Lead to Suboptimal Growth of Escherichia coli
Cited by: 16
Author(s): Camille Peiro, Pierre Millard, Alessandro De Simone, Edern Cahoreau, Lindsay Peyriga, Brice Enjalbert, Stéphanie Heux
Software Mentions: 1
Published: over 5 years ago

10.1128/AEM.01528-17

Probing the Genome-Scale Metabolic Landscape of Bordetella pertussis, the Causative Agent of Whooping Cough
Cited by: 20
Author(s): Filipe Branco dos Santos, Brett G. Olivier, Joost Boele, Vincent Smessaert, Philippe De Rop, Petra Krumpochova, Gunnar W. Klau, Martin Giera, Philippe Dehottay, Bas Teusink, Philippe Goffin
Software Mentions: 1
Published: about 7 years ago

10.1007/s00253-018-8832-9

Immediate response mechanisms of Gram-negative solvent-tolerant bacteria to cope with environmental stress: cis-trans isomerization of unsaturated fatty acids and outer membrane vesicle secretion
Cited by: 84
Author(s): Christian Eberlein, Thomas Baumgarten, Stephan Starke, Hermann J. Heipieper
Software Mentions: 1
Published: almost 7 years ago

10.1186/ar4096

Excessive bone formation in a mouse model of ankylosing spondylitis is associated with decreases in Wnt pathway inhibitors
Cited by: 74
Author(s): Katelin Haynes, Allison R. Pettit, Ran Duan, Hsu‐Wen Tseng, Tibor T. Glant, Matthew A. Brown, Gethin Thomas
Software Mentions: 1
Published: almost 13 years ago

10.1186/s13075-019-1816-z

Microbiome dysbiosis is associated with disease duration and increased inflammatory gene expression in systemic sclerosis skin
Cited by: 24
Author(s): Michael E. Johnson, Jennifer M Franks, Guoshuai Cai, Bhaven K. Mehta, Tammara A. Wood, Kimberly Archambault, Patricia A. Pioli, Robert W. Simms, Nicole M. Orzechowski, Sarah T. Arron, Michael L. Whitfield
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2105-6-225

Pathway level analysis of gene expression using singular value decomposition
Cited by: 336
Author(s): John K. Tomfohr, Jun Lü, Thomas B. Kepler
Software Mentions: 1
Published: about 19 years ago

10.1186/1471-2105-12-84

Meta-analysis of gene expression microarrays with missing replicates
Cited by: 3
Author(s): Fan Shi, Gad Abraham, Christopher Leckie, Izhak Haviv, Adam Kowalczyk
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2105-15-45

DFLAT: functional annotation for human development
Cited by: 19
Author(s): Heather C. Wick, Harold J. Drabkin, Huy Ngu, Michael Sackman, Craig Fournier, Jessica Haggett, Judith A. Blake, Diana W. Bianchi, Donna K. Slonim
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2105-14-S17-A11

Differential coexpression network modules observed in human hepatocellular carcinoma progression
Cited by: 0
Author(s): Hui Yu, Zhongming Zhao
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2105-12-243

RegNetB: Predicting Relevant Regulator-Gene Relationships in Localized Prostate Tumor Samples
Cited by: 16
Author(s): Angel A. Alvarez, Peter J. Woolf
Software Mentions: 1
Published: over 13 years ago

10.1186/s12859-021-04289-z

Uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study
Cited by: 0
Author(s): Shade Horn, Jacky L. Snoep, David D. van Niekerk
Software Mentions: 1
Published: over 3 years ago

10.1186/s12885-021-08350-1

Genomic stratification based on microenvironment immune types and PD-L1 for tailoring therapeutic strategies in bladder cancer
Cited by: 2
Author(s): Xintong Lyu, Ping Wang, Qiao Qiao, Yufei Jiang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12885-020-07552-3

A nuclear transport-related gene signature combined with IDH mutation and 1p/19q codeletion better predicts the prognosis of glioma patients
Cited by: 3
Author(s): Zheng Zhu, Lan Yang, Lihong Wang, Jia Ge, Jiao Wang, Feng Liu, Zhicheng He, Hua Zhang, Min Luo, Dandan Lin, Yaoyao Tan, Yuanyuan Xu, Tao Luo
Software Mentions: 1
Published: about 4 years ago

10.1186/s12885-019-5322-0

VEGFR2 promotes tumorigenesis and metastasis in a pro-angiogenic-independent way in gastric cancer
Cited by: 76
Author(s): Lian Lian, Xiangli Li, Mengdan Xu, Xianmin Li, Mengyao Wu, Yan Zhang, Min Tao, Wei Li, Shen Xiang‐dong, Chong Zhou, Min Jiang
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2407-9-300

Resistance gene expression determines the in vitro chemosensitivity of non-small cell lung cancer (NSCLC)
Cited by: 33
Author(s): Sharon Glaysher, Dennis Yiannakis, Francis G. Gabriel, Penny Johnson, Marta E. Polak, Louise A. Knight, Zoe Goldthorpe, Katharine Peregrin, M.M. Gyi, Paul Modi, J Rahamim, Mark E. Smith, Khalid Amer, B. J. Addis, Matthew Poole, Ajit Narayanan, T. Gulliford, Peter E. Andreotti, Ian A. Cree
Software Mentions: 1
Published: about 15 years ago

10.1186/s12885-019-6366-x

Detection of carcinogen-induced bladder cancer by fluorocoxib A
Cited by: 6
Author(s): Jennifer Bourn, Kusum Rathore, Robert Donnell, W F White, Md. Jashim Uddin, Lawrence J. Marnett, Maria Cekanova
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12872-021-01856-3

Predictors of cardiac involvement and survival in patients with primary systemic light-chain amyloidosis: roles of the clinical, chemical, and 3-D speckle tracking echocardiography parameters
Cited by: 14
Author(s): Chao Lei, Xiaoli Zhu, David H. Hsi, Jing Wang, Li Zuo, Shengjun Ta, Qianli Yang, Lei Xu, Xueqin Zhao, Yan Wang, Shan Sun, Liwen Liu
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12906-020-02905-8

Investigation of cardiovascular protective effect of Shenmai injection by network pharmacology and pharmacological evaluation
Cited by: 17
Author(s): Li Lin, Dongli Yang, Jinghao Li, Lu Niu, Ye Chen, Xin Zhao, Patrick Kwabena Oduro, Chun Wang, Zongpei Xu, Qilong Wang, Yuhong Li
Software Mentions: 1
Published: over 4 years ago

10.1186/s12901-015-0019-8

Discriminant validity and test re-test reproducibility of a gait assessment in patients with vestibular dysfunction
Cited by: 17
Author(s): Annatina Schmidheiny, Jaap Swanenburg, Dominik Straumann, Eling D. de Bruin, Ruud H. Knols
Software Mentions: 1
Published: about 9 years ago

10.1186/s12863-014-0160-1

Genome-wide detection and characterization of positive selection in Korean Native Black Pig from Jeju Island
Cited by: 16
Author(s): Jaemin Kim, Seoae Cho, Kelsey Caetano-Anollés, Heebal Kim, Youn-Chul Ryu
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2164-14-854

Kinotypes: stable species- and individual-specific profiles of cellular kinase activity
Cited by: 17
Author(s): Brett Trost, Jason Kindrachuk, Erin Scruten, Philip Griebel, Anthony Kusalik, Scott Napper
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-015-1969-3

The impact of PPARα activation on whole genome gene expression in human precision cut liver slices
Cited by: 65
Author(s): Aafke W. F. Janssen, Bark Betzel, Geert Stoopen, Frits J. Berends, Ignace Janssen, Ad Peijnenburg, Sander Kersten
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-9-210

Genomics of an extreme psychrophile, Psychromonas ingrahamii
Cited by: 117
Author(s): Matilda White Riley, James T. Staley, Antoine Danchin, Ting Zhang Wang, Thomas Brettin, Loren Hauser, Miriam Land, Linda S. Thompson
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2164-11-212

Mercury-induced hepatotoxicity in zebrafish: in vivo mechanistic insights from transcriptome analysis, phenotype anchoring and targeted gene expression validation
Cited by: 126
Author(s): Choong Yong Ung, Siew Hong Lam, Mya Myintzu Hlaing, Cecilia Lanny Winata, Svetlana Korzh, Sinnakaruppan Mathavan, Zhiyuan Gong
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-10-403

Transcriptional profiling reveals developmental relationship and distinct biological functions of CD16+ and CD16- monocyte subsets
Cited by: 242
Author(s): Petronela Ancuța, Kuang-Yu Liu, Vikas Misra, Vanessa Sue Wacleche, Annie Gosselin, Xiaobo Zhou, Dana Gabuzda
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-13-54

Zonation related function and ubiquitination regulation in human hepatocellular carcinoma cells in dynamic vs. static culture conditions
Cited by: 23
Author(s): Shu Cheng, Jean‐Matthieu Prot, Éric Leclerc, Frédéric Y. Bois
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-6-46

Osteo-Promoter Database (OPD) – Promoter analysis in skeletal cells
Cited by: 9
Author(s): Inbal Grienberg, Dafna Benayahu
Software Mentions: 1
Published: over 19 years ago

10.1186/s12864-016-2984-8

Microarray based gene expression analysis of Sus Scrofa duodenum exposed to zearalenone: significance to human health
Cited by: 22
Author(s): Cornelia Braicu, Roxana Cojocneanu, Ancuța Jurj, Diana Gulei, Ionelia Țăranu, Alexandru Mihail Gras, Daniela Eliza Marin, Ioana Berindan‐Neagoe
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-13-702

Is chemically dispersed oil more toxic to Atlantic cod (Gadus morhua) larvae than mechanically dispersed oil? A transcriptional evaluation
Cited by: 37
Author(s): Pål A. Olsvik, Kai Kristoffer Lie, Trond Nordtug, Bjørn Henrik Hansen
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-11-176

The embryonic genes Dkk3, Hoxd8, Hoxd9 and Tbx1 identify muscle types in a diet-independent and fiber-type unrelated way
Cited by: 23
Author(s): Janneke de Wilde, Martijn F. M. Hulshof, Mark V. Boekschoten, Philip de Groot, Egbert F. Smit, E.C.M. Mariman
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12864-021-07634-x

RNA sequencing-based analysis of the magnum tissues revealed the novel genes and biological pathways involved in the egg-white formation in the laying hen
Cited by: 8
Author(s): Nirvay Sah, Donna Lee Kuehu, Vedbar S. Khadka, Youping Deng, Rajesh Jha, S. S. Wasti
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-016-3139-7

miR-27b shapes the presynaptic transcriptome and influences neurotransmission by silencing the polycomb group protein Bmi1
Cited by: 14
Author(s): Vivian Y. Poon, Minxia Gu, Fang Ji, Antonius M.J. VanDongen, Marc Fivaz
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-018-4656-3

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
Cited by: 130
Author(s): Sarah M. Pilkington, Ross N. Crowhurst, Elena Hilario, Simona Nardozza, Lena G. Fraser, Yongyan Peng, Kularajathevan Gunaseelan, Robert M. Simpson, Jibran Tahir, Simon C. Deroles, Kerry Templeton, Zhiwei Luo, Marcus Davy, Canhong Cheng, M.A. McNeilage, Davide Scaglione, Yifei Liu, Qiong Zhang, Paul M. Datson, Nihal De Silva, Susan E. Gardiner, H. Bassett, David Chagné, John McCallum, Helge Dzierzon, Cecilia Deng, Yen-Yi Wang, Lorna Barron, K.I. Manako, Judith Bowen, Toshi Foster, Zoë A. Erridge, Heather R. Tiffin, Chethi N. Waite, Kelvin J.A. Davies, Ella P. Grierson, William A. Laing, Rebecca Kirk, Xiuyin Chen, Marion Wood, Mirco Montefiori, David A. Brummell, Kathy E. Schwinn, Andrew Catanach, Christina Fullerton, Dawei Li, Sathiyamoorthy Meiyalaghan, Niels J. Nieuwenhuizen, Nicola Read, Roneel Prakash, D. J. Hunter, Huaibi Zhang, Marian J. McKenzie, Mareike Knäbel, Alastair Harris, Andrew C. Allan, Andrew P. Gleave, Angela Chen, Bart Janssen, Blue Plunkett, Charles Ampomah‐Dwamena, Charlotte Voogd, Davin Leif, Declan J. Lafferty, Edwige J. F. Souleyre, Erika Varkonyi‐Gasic, Francesco Gambi, Jenny Hanley, Jia‐Long Yao, J Cheung, Karine David, Ben Warren, K. B. Marsh, Kimberley C. Snowden, Kui Lin‐Wang, Lara Brian, Marcela Martínez-Sánchez, Mindy Wang, Nadeesha R. Ileperuma, Nikolai Macnee, Robert Campin, Peter A. McAtee, Revel S.M. Drummond, Richard V. Espley, Hilary S. Ireland, Rui Wu, Ross G. Atkinson, Sakuntala Karunairetnam, Sean Bulley, Shayhan Chunkath, Zac Hanley, Roy Storey, Amali H. Thrimawithana, Susan Thomson, Charles N. David, R. Testolin, Hongwen Huang, Roger P. Hellens, Robert J. Schaffer
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-019-5558-8

Systems based analysis of human embryos and gene networks involved in cell lineage allocation
Cited by: 13
Author(s): Hannah Smith, Adam Stevens, Ben M. Minogue, Sharon Sneddon, Lisa Shaw, Liam Wood, Tope Adeniyi, Hui Xiao, Píetro Lió, Susan J. Kimber, Daniel R. Brison
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-14-324

Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information
Cited by: 25
Author(s): Ricardo de Matos Simoes, Matthias Dehmer, Frank Emmert‐Streib
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-10-90

Expression profiling and Ingenuity biological function analyses of interleukin-6- versus nerve growth factor-stimulated PC12 cells
Cited by: 19
Author(s): Dieter Kunz, Gaby Walker, Marc Bedoucha, Ulrich Certa, Pia März-Weiss, Beatrice Dimitriades-Schmutz, U. Otten
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12877-021-02261-3

Clinical features and outcomes of COVID-19 in older adults: a systematic review and meta-analysis
Cited by: 67
Author(s): Sunny Singhal, Pramod Kumar, Sumitabh Singh, Srishti Saha, Aparajit Ballav Dey
Software Mentions: 1
Published: over 3 years ago

10.1186/s12913-018-3742-1

Cross-sectoral integration in youth-focused health and social services in Canada: a social network analysis
Cited by: 8
Author(s): Rachel McGihon, Lisa D. Hawke, Gloria Chaim, Joanna Henderson
Software Mentions: 1
Published: almost 6 years ago

10.1186/1472-6963-14-355

Adjusting for geographic variation in observational comparative effectiveness studies: a case study of antipsychotics using state Medicaid data
Cited by: 3
Author(s): Elisabeth Dowling Root, Deborah S.K. Thomas, Elizabeth J. Campagna, Elaine H. Morrato
Software Mentions: 1
Published: about 10 years ago

10.1186/s12916-016-0739-7

Evaluation of computer-based computer tomography stratification against outcome models in connective tissue disease-related interstitial lung disease: a patient outcome study
Cited by: 68
Author(s): Joseph Jacob, Brian J. Bartholmai, Srinivasan Rajagopalan, Anne Brun, Ryoko Egashira, Ronald A. Karwoski, Maria Kokosi, Athol U. Wells, David M. Hansell
Software Mentions: 1
Published: about 8 years ago

10.1186/s12916-019-1465-8

Body composition of children with moderate and severe undernutrition and after treatment: a narrative review
Cited by: 30
Author(s): Jonathan C. K. Wells
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12881-017-0395-6

NT5C2 novel splicing variant expands the phenotypic spectrum of Spastic Paraplegia (SPG45): case report of a new member of thin corpus callosum SPG-Subgroup
Cited by: 14
Author(s): Mahmoud F. Elsaid, Khalid Ibrahim, Nader Chalhoub, Ahmed Elsotouhy, Noora El Mudehki, Alice Kamal Abd El Aleem
Software Mentions: 1
Published: over 7 years ago

10.1186/1755-8794-2-37

Gene expression profiling identifies activated growth factor signaling in poor prognosis (Luminal-B) estrogen receptor positive breast cancer
Cited by: 54
Author(s): Sherene Loi, Christos Sotiriou, Benjamin Haibe‐Kains, Françoise Lallemand, Nelly Conus, Martine Piccart, Terence P. Speed, Grant A. McArthur
Software Mentions: 1
Published: over 15 years ago