10.1371/journal.pone.0020763

A Systems Level, Functional Genomics Analysis of Chronic Epilepsy
Cited by: 63
Author(s): Kellen D. Winden, Stanislav L. Karsten, Anatol Bragin, Lili C. Kudo, Lauren Gehman, Josephine Ruidera, Daniel H. Geschwind, Jerome Engel
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0107559

Gene Expression and Pathway Analysis of Effects of the CMAH Deactivation on Mouse Lung, Kidney and Heart
Cited by: 15
Author(s): Deug-Nam Kwon, Byungsoo Chang, Jin‐Hoi Kim
Software Mentions: 2
Published: about 11 years ago

10.1186/1471-2164-14-436

Deciphering the response of Mycobacterium smegmatis to nitrogen stress using bipartite active modules
Cited by: 15
Author(s): Katrina Williams, William A Bryant, Victoria A Jenkins, Geraint Barton, Adam A. Witney, John W. Pinney, Brian D. Robertson
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0210008

Constraints-based analysis identifies NAD+ recycling through metabolic reprogramming in antibiotic resistant Chromobacterium violaceum
Cited by: 10
Author(s): Deepanwita Banerjee, Anu Raghunathan
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0193271

Placental CpG methylation of infants born extremely preterm predicts cognitive impairment later in life
Cited by: 26
Author(s): Sloane K. Tilley, Elizabeth M. Martin, Lisa Smeester, Robert M. Joseph, Karl Kuban, Timothy Heeren, Olaf Dammann, T. Michael O’Shea, Rebecca C. Fry
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0211502

Switching between reading tasks leads to phase-transitions in reading times in L1 and L2 readers
Cited by: 3
Author(s): Sebastian Wallot, Jun Taek Lee, Damian G. Kelty-Stephen
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0064181

Suppression and Activation of the Malignant Phenotype by Extracellular Matrix in Xenograft Models of Bladder Cancer: A Model for Tumor Cell “Dormancy”
Cited by: 15
Author(s): Robert E. Hurst, Paul Hauser, Kimberly D. Kyker, Jonathan E. Heinlen, Jason P. Hodde, Michael C. Hiles, Stanley D. Kosanke, Mikhail G. Dozmorov, Michael A. Ihnat
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0159790

Phylogeography of Libanotis buchtormensis (Umbelliferae) in Disjunct Populations along the Deserts in Northwest China
Cited by: 7
Author(s): Ping Wang, Xianzhi Zhang, Nan Tang, Jianjun Liu, Liang Xu, Kai Wang
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0160574

Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers
Cited by: 15
Author(s): Michelle Davison, Todd J. Treangen, Sergey Koren, Mihai Pop, Devaki Bhaya
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0164627

Comparing Eye Tracking with Electrooculography for Measuring Individual Sentence Comprehension Duration
Cited by: 13
Author(s): Jana Müller, Dorothea Wendt, Birger Kollmeier, Thomas Brand
Software Mentions: 2
Published: about 9 years ago

10.1042/BSR20204359

Identified a disintegrin and metalloproteinase with thrombospondin motifs 6 serve as a novel gastric cancer prognostic biomarker by bioinformatics analysis
Cited by: 4
Author(s): Yazhen Zhu, Yi Liu, Xiwen Liao, Shuang Luo
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0096841

HaplotypeCN: Copy Number Haplotype Inference with Hidden Markov Model and Localized Haplotype Clustering
Cited by: 3
Author(s): Yen-Jen Lin, Yu-Tin Chen, Shu-Ni Hsu, Chieh Yu Peng, Chuan‐Yi Tang, Tzu‐Chen Yen, Wu‐Chiao Hsieh
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0134014

Flux Balance Analysis with Objective Function Defined by Proteomics Data—Metabolism of Mycobacterium tuberculosis Exposed to Mefloquine
Cited by: 21
Author(s): Daniel Montezano, Laura Meek, Rashmi Gupta, Luiz E. Bermudez, J.C.M. Bermudez
Software Mentions: 2
Published: over 10 years ago

10.1186/s12864-019-5495-6

A unique insight into the MiRNA profile during genital chlamydial infection
Cited by: 13
Author(s): Ifeyinwa Benyeogor, Tankya Simoneaux, Yuehao Wu, Stephanie Lundy, Zenas George, Khamia Ryans, Danielle McKeithen, Roshan Pais, Debra Ellerson, W. Walter Lorenz, Tolulope Omosun, Winston E. Thompson, Francis O. Eko, Carolyn M. Black, Uriel Blás-Machado, Joseph U. Igietseme, Qing He, Yusuf Omosun
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-021-07510-8

Gene co-expression network analysis reveals key pathways and hub genes in Chinese cabbage (Brassica rapa L.) during vernalization
Cited by: 18
Author(s): Yun Dai, Xiao Sun, Chenggang Wang, Fĕi Li, Shifan Zhang, Hui Zhang, Guoliang Li, Lingyun Yuan, Guohu Chen, Rifei Sun, Shujiang Zhang
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0011031

Acetaminophen Modulates the Transcriptional Response to Recombinant Interferon-β
Cited by: 16
Author(s): Aaron Farnsworth, Anathea S. Flaman, Shiv S. Prasad, Caroline Gravel, Andrew Williams, Carole L. Yauk, Xuguang Li
Software Mentions: 2
Published: over 15 years ago

10.1038/s41408-020-00344-9

In vitro and ex vivo gene expression profiling reveals differential kinetic response of HSPs and UPR genes is associated with PI resistance in multiple myeloma
Cited by: 9
Author(s): Amit Mitra, Harish Kumar, Vijay Ramakrishnan, Li Chen, Linda B. Baughn, Santosh Kumar, S. Vincent Rajkumar, Brian G. Van Ness
Software Mentions: 2
Published: over 5 years ago

10.1038/s41413-019-0055-x

Extra-skeletal manifestations in mice affected by Clcn7-dependent autosomal dominant osteopetrosis type 2 clinical and therapeutic implications
Cited by: 12
Author(s): Antonio Maurizi, Mattia Capulli, A Curle, Rajvi Patel, Argia Ucci, JA Cortes, H Oxford, Shireen R. Lamandé, J Bateman, Nadia Rucci, Anna Teti
Software Mentions: 2
Published: over 6 years ago

10.1038/s41413-020-00120-2

MEF2C regulates osteoclastogenesis and pathologic bone resorption via c-FOS
Cited by: 25
Author(s): Takayuki Fujii, Koichi Murata, Se-Hwan Mun, Seyeon Bae, Ye Ji Lee, Tannia Pannellini, Ki‐Woon Kang, David J. Oliver, Kyung‐Hyun Park‐Min, Lionel B. Ivashkiv
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0151436

Understory Plant Community Composition Is Associated with Fine-Scale Above- and Below-Ground Resource Heterogeneity in Mature Lodgepole Pine (Pinus contorta) Forests
Cited by: 16
Author(s): Anne C.S. McIntosh, S. Ellen Macdonald, Sylvie A. Quideau
Software Mentions: 2
Published: over 9 years ago

10.1038/s41416-018-0196-5

MiR-532-5p suppresses renal cancer cell proliferation by disrupting the ETS1-mediated positive feedback loop with the KRAS-NAP1L1/P-ERK axis
Cited by: 58
Author(s): Wei Zhai, Junjie Ma, Ronggang Zhu, Chun‐Fang Xu, Jin Zhang, Yonghui Chen, Zhiguo Chen, Dongkui Gong, Jiayi Zheng, Chen Chen, Saiyang Li, Butang Li, Yiran Huang, Wei Xue, Junhua Zheng
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0019328

Identification of Hyaloperonospora arabidopsidis Transcript Sequences Expressed during Infection Reveals Isolate-Specific Effectors
Cited by: 57
Author(s): Adriana Cabral, Joost H. M. Stassen, Michael Seidl, Jaqueline Bautor, Jane E. Parker, Guido Van den Ackerveken
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0256710

Inter-metropolitan land price characteristics and pattern in the Beijing-Tianjin-Hebei urban agglomeration, China
Cited by: 4
Author(s): Pengfei An, Can Li, Yajing Duan, Jun Ge, Xiangbo Feng
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0232160

The hepatic transcriptome of the turkey poult (Meleagris gallopavo) is minimally altered by high inorganic dietary selenium
Cited by: 4
Author(s): Rachel M Taylor, Kristelle M. Mendoza, Juan E. Abrahante, Kent M. Reed, Roger A. Sunde
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-018-5195-7

Genetic ancestry, admixture and health determinants in Latin America
Cited by: 68
Author(s): Emily T. Norris, Lu Wang, Andrew B. Conley, Lavanya Rishishwar, Leonardo Mariño-Ramírez, Augusto Valderrama-Aguirre, I. King Jordan
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2164-11-194

Evidence of perturbations of cell cycle and DNA repair pathways as a consequence of human and murine NF1-haploinsufficiency
Cited by: 17
Author(s): Alexander Pemov, Caroline Park, Karlyne M. Reilly, Douglas R. Stewart
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0211291

Aberrant FAM64A mRNA expression is an independent predictor of poor survival in pancreatic cancer
Cited by: 50
Author(s): Yan Jiao, Zhuo Fu, Yanqing Li, Wei Zhang, Yahui Liu
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-019-5880-1

Epigenome-wide skeletal muscle DNA methylation profiles at the background of distinct metabolic types and ryanodine receptor variation in pigs
Cited by: 23
Author(s): Siriluck Ponsuksili, Nares Trakooljul, Basavaraj Sajjanar, Frieder Hadlich, Eduard Muráni, Klaus Wimmers
Software Mentions: 2
Published: over 6 years ago

10.1186/bcr3567

An optimized five-gene multi-platform predictor of hormone receptor negative and triple negative breast cancer metastatic risk
Cited by: 28
Author(s): Christina Yau, John J. Sninsky, Shirley Kwok, Alice Wang, Amy C. Degnim, James N. Ingle, Cheryl Gillett, Andrew Tutt, Fred Waldman, Dan H. Moore, Laura J. Esserman, Christopher C. Benz
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0102498

Sediment and Turbidity Associated with Offshore Dredging Increase Coral Disease Prevalence on Nearby Reefs
Cited by: 166
Author(s): F. Joseph Pollock, Joleah B. Lamb, Stuart N. Field, Scott F. Heron, Britta Schaffelke, George Shedrawi, David G. Bourne, Bette L. Willis
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0065571

Peptidomic Identification of Serum Peptides Diagnosing Preeclampsia
Cited by: 36
Author(s): Qiaojun Wen, Linda Y. Liu, Ting Yang, Cantas Alev, Shao-Yi Wu, David K. Stevenson, Guojun Sheng, Atul J. Butte, Xuefeng B. Ling
Software Mentions: 2
Published: over 12 years ago

10.1186/s13058-019-1142-z

Parity predisposes breasts to the oncogenic action of PAPP-A and activation of the collagen receptor DDR2
Cited by: 18
Author(s): Elizabeth Slocum, Amanda Craig, Augusto Villanueva, Doris Germain
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-9-105

MADIBA: A web server toolkit for biological interpretation of Plasmodium and plant gene clusters
Cited by: 25
Author(s): Philip Law, Clotilde Claudel‐Renard, Fourie Joubert, Abraham I. Louw, David Kenneth Berger
Software Mentions: 2
Published: almost 18 years ago

10.1186/bcr3689

Parity-related molecular signatures and breast cancer subtypes by estrogen receptor status
Cited by: 35
Author(s): Melissa Rotunno, Xuezheng Sun, Jonine D. Figueroa, Mark E. Sherman, Montserrat García-Closas, Paul S. Meltzer, Tyisha Williams, Sallie S. Schneider, D. Joseph Jerry, Xiaohong R. Yang, Melissa A. Troester
Software Mentions: 2
Published: almost 12 years ago

10.1186/s40478-019-0705-7

Transcriptome analysis of normal-appearing white matter reveals cortisol- and disease-associated gene expression profiles in multiple sclerosis
Cited by: 14
Author(s): Jeroen Melief, Marie Orre, Koen Bossers, C.G. van Eden, Karianne Schuurman, Matthew R. J. Mason, Joost Verhaagen, Jörg Hamann, Inge Huitinga
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0246259

Prediction of 72-hour mortality in patients with extremely high serum C-reactive protein levels using a novel weighted average of risk scores
Cited by: 5
Author(s): Kai Saito, Hitoshi Sugawara, Kiyoshi Ichihara, Takushi X. Watanabe, Akira Ishii, Takeo Fukuchi
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0170458

Transcriptome-wide co-expression analysis identifies LRRC2 as a novel mediator of mitochondrial and cardiac function
Cited by: 10
Author(s): Chris McDermott-Roe, Marion Leleu, Glenn C. Rowe, Oleg Palygin, John D. Bukowy, Judy Kuo, Monika Rech, Steffie Hermans-Beijnsberger, S. Schaefer, Eleonora Adami, Esther E. Creemers, Matthias Heinig, Blanche Schroen, Zoltàn Arany, Enrico Petretto, Aron M. Geurts
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12935-021-01938-4

NEIL3 may act as a potential prognostic biomarker for lung adenocarcinoma
Cited by: 14
Author(s): Chun‐Mei Zhao, Jian Liu, Haomiao Zhou, Qian Xin, Hui Sun, Xuewen Chen, Miaosen Zheng, Tingting Bian, Lei Liu, Yifei Liu, Jianguo Zhang
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2164-14-102

Biclustering reveals breast cancer tumour subgroups with common clinical features and improves prediction of disease recurrence
Cited by: 26
Author(s): Yi Kan Wang, Cristin G. Print, Edmund J. Crampin
Software Mentions: 2
Published: almost 13 years ago

10.1186/s40478-017-0424-x

A data-driven approach links microglia to pathology and prognosis in amyotrophic lateral sclerosis
Cited by: 54
Author(s): Johnathan Cooper‐Knock, Claire Green, Gabriel Altschuler, Wenbin Wei, Joanna J. Bury, Paul R. Heath, Matthew Wyles, Catherine Gelsthorpe, J. Robin Highley, Alejandro Lorente-Pons, Tim Beck, Kathryn Doyle, Karel Otero, Bryan J. Traynor, Janine Kirby, Pamela J. Shaw, Winston Hide
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0158767

Assessing Progress, Impact, and Next Steps in Rolling Out Voluntary Medical Male Circumcision for HIV Prevention in 14 Priority Countries in Eastern and Southern Africa through 2014
Cited by: 44
Author(s): Katharine Kripke, Emmanuel Njeuhmeli, Julia Samuelson, Melissa Schnure, Shona Dalal, Timothy M.M. Farley, Catherine Hankins, Anne Thomas, Jason Reed, Peter Stegman, Naomi Bock
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0067489

Fetal DNA Methylation Associates with Early Spontaneous Preterm Birth and Gestational Age
Cited by: 84
Author(s): Sasha Parets, Karen N. Conneely, Varun Kilaru, Stephen J. Fortunato, Tariq Ali Syed, George R. Saade, Alicia K. Smith, Ramkumar Menon
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0118466

Ancestry Dependent DNA Methylation and Influence of Maternal Nutrition
Cited by: 40
Author(s): Khyobeni Mozhui, Alicia K. Smith, Frances A. Tylavsky
Software Mentions: 2
Published: over 10 years ago

10.1186/s12935-015-0224-y

Inhibition of CDK4/6 as a novel therapeutic option for neuroblastoma
Cited by: 36
Author(s): Ali Rihani, Jo Vandesompele, Frank Speleman, Torn Van Maerken
Software Mentions: 2
Published: over 10 years ago

10.1186/s12935-020-01361-1

Identification of four hub genes as promising biomarkers to evaluate the prognosis of ovarian cancer in silico
Cited by: 16
Author(s): Jingxuan Chen, Yun Cai, Rui Xu, Jiadong Pan, Jie Zhou, Jie Mei
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0070412

Detection of Deregulated Modules Using Deregulatory Linked Path
Cited by: 5
Author(s): Yuxuan Hu, Lin Gao, Kai Shi, David Chiu
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0094700

The Role of Wildfire, Prescribed Fire, and Mountain Pine Beetle Infestations on the Population Dynamics of Black-Backed Woodpeckers in the Black Hills, South Dakota
Cited by: 31
Author(s): Christopher T. Rota, Joshua J. Millspaugh, Mark A. Rumble, Chad P. Lehman, Dylan C. Kesler
Software Mentions: 2
Published: over 11 years ago

10.3390/cancers13123057

Distinct Responsiveness of Tumor-Associated Macrophages to Immunotherapy of Tumors with Different Mechanisms of Major Histocompatibility Complex Class I Downregulation
Cited by: 2
Author(s): Adrianna Piatakova, Ingrid Poláková, Jana Šmahelová, Shweta Dilip Johari, Jaroslav Nunvář, Michal Šmahel
Software Mentions: 2
Published: over 4 years ago

10.3390/cancers11121880

Delineation of Tumor Migration Paths by Using a Bayesian Biogeographic Approach
Cited by: 6
Author(s): Antonia Chroni, Tracy Vu, Sayaka Miura, Sudhir Kumar
Software Mentions: 2
Published: about 6 years ago

10.1186/1471-2164-14-533

Correlated mRNAs and miRNAs from co-expression and regulatory networks affect porcine muscle and finally meat properties
Cited by: 41
Author(s): Siriluck Ponsuksili, Yang Du, Frieder Hadlich, Puntita Siengdee, Eduard Muráni, Manfred Schwerin, Klaus Wimmers
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2164-12-607

Genetic architecture of gene expression in ovine skeletal muscle
Cited by: 17
Author(s): Lisette J. A. Kogelman, Keren Byrne, Tony Vuocolo, Nathan S. Watson-Haigh, Haja N. Kadarmideen, James W. Kijas, V. H. Oddy, G.E. Gardner, Cedric Gondro, Ross L. Tellam
Software Mentions: 2
Published: almost 14 years ago

10.3390/cancers11081050

PD-L1 Blockade by Atezolizumab Downregulates Signaling Pathways Associated with Tumor Growth, Metastasis, and Hypoxia in Human Triple Negative Breast Cancer
Cited by: 46
Author(s): Reem Saleh, Rowaida Z. Taha, Varun Sasidharan Nair, Nehad M. Alajez, Eyad Elkord
Software Mentions: 2
Published: over 6 years ago

10.18632/aging.101749

Expression and gene regulation network of RBM8A in hepatocellular carcinoma based on data mining
Cited by: 48
Author(s): Yan Lin, Rong Liang, Yufen Qiu, Yufeng Lv, Jinyan Zhang, Gang Qin, Chunling Yuan, Zhihui Liu, Yongqiang Li, Donghua Zou, Ying Mao
Software Mentions: 2
Published: almost 7 years ago

10.1002/cam4.386

<i>S</i> ‐adenosylmethionine blocks osteosarcoma cells proliferation and invasion <i>in vitro</i> and tumor metastasis <i>in vivo</i> : therapeutic and diagnostic clinical applications
Cited by: 46
Author(s): Surabhi Parashar, David Cheishvili, Ani Arakelian, Zahid Hussain, Imrana Tanvir, Haseeb Ahmed Khan, Moshe Szyf, Shafaat A. Rabbani
Software Mentions: 2
Published: almost 11 years ago

10.3390/cancers13143388

Extracellular Vesicle Transmission of Chemoresistance to Ovarian Cancer Cells Is Associated with Hypoxia-Induced Expression of Glycolytic Pathway Proteins, and Prediction of Epithelial Ovarian Cancer Disease Recurrence
Cited by: 32
Author(s): Mona Alharbi, Andrew Lai, Shayna Sharma, Priyakshi Kalita-de Croft, Nihar Godbole, América Campos, Dominic Guanzon, Alexis Salas-Burgos, Flavio Carrión, Felipe Zúñiga, Lewis Perrin, Yaowu He, Tanja Pejović, Carmen Winters, Terry K. Morgan, John D. Hooper, Gregory E. Rice, Carlos Salomón
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-021-07885-8

Fine dissection of limber pine resistance to Cronartium ribicola using targeted sequencing of the NLR family
Cited by: 6
Author(s): Junjun Liu, Anna W. Schoettle, Richard A. Sniezko, Holly Williams, Arezoo Zamany, Benjamin Rancourt
Software Mentions: 2
Published: over 4 years ago

10.3390/cancers12020363

Integrin α7 and Extracellular Matrix Laminin 211 Interaction Promotes Proliferation of Acute Myeloid Leukemia Cells and Is Associated with Granulocytic Sarcoma
Cited by: 13
Author(s): Nobuhiko Kobayashi, Tsukasa Oda, Makiko Takizawa, Takuma Ishizaki, Norifumi Tsukamoto, Akihiko Yokohama, Hisashi Takei, Takayuki Saitoh, Hiroaki Shimizu, Kazuki Honma, Kei Kimura-Masuda, Yuko Kuroda, Rei Ishihara, Yuki Murakami, Hirokazu Murakami, Hiroshi Handa
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-48059-7

Alterations in lipid metabolism of spinal cord linked to amyotrophic lateral sclerosis
Cited by: 84
Author(s): Adriano B. Chaves‐Filho, Isabella Fernanda Dantas Pinto, Lucas S. Dantas, André Machado Xavier, Alex Inague, Rodrigo L. Faria, Marisa Helena Gennari de Medeiros, Isaías Glezer, Marcos Yukio Yoshinaga, Sayuri Miyamoto
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2020.590475

Identification and Expression Analysis of Long Non-coding RNA in Large Yellow Croaker (Larimichthys crocea) in Response to Cryptocaryon irritans Infection
Cited by: 12
Author(s): Xinyi Zhang, Tao Zhou, Baohua Chen, Haili Bai, Yulin Bai, Ji Zhao, Fei Pu, Yidi Wu, Chen Lin, You Shi, Qiaozhen Ke, Weiqiang Zheng, Jia Chen, Peng Xu
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-89252-x

Effect of plane of nutrition in early life on the transcriptome of visceral adipose tissue in Angus heifer calves
Cited by: 8
Author(s): Kate Keogh, A. K. Kelly, David A. Kenny
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms22073489

CRISPR-Cas9–Mediated TIM3 Knockout in Human Natural Killer Cells Enhances Growth Inhibitory Effects on Human Glioma Cells
Cited by: 30
Author(s): Takayuki Morimoto, Tsutomu Nakazawa, Ryosuke Matsuda, Fusanori Nishimura, Mitsutoshi Nakamura, Shuichi Yamada, Ichiro Nakagawa, Young-Soo Park, Takahiro Tsujimura, Hiroyuki Nakase
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2021.640951

Explore the Underlying Mechanism Between Atopic Dermatitis and Major Depressive Disorder
Cited by: 2
Author(s): Tao Yang, Xuehua Huang, Jiajun Xu, Mingjing Situ, Qingqing Xiao, Kamil Can Kural, Yan Kang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12967-020-02630-3

A machine learning-based clinical tool for diagnosing myopathy using multi-cohort microarray expression profiles
Cited by: 6
Author(s): Andrew Tran, Chris J. Walsh, Jane Batt, Claudia C. dos Santos, Pingzhao Hu
Software Mentions: 2
Published: almost 5 years ago

10.1186/1479-5876-4-29

Gene expression in acute Stanford type A dissection: a comparative microarray study
Cited by: 44
Author(s): Barbara Theresia Weis-Müller, Olga Modlich, Irina Drobinskaya, Derya Unay, Rita Huber, Hans Bojar, Jochen D. Schipke, P. Feindt, E. Gams, Wolfram Müller, Timm O. Goecke, W. Sandmann
Software Mentions: 2
Published: over 19 years ago

10.3390/ijms22052452

A Systems Biology Approach to Investigating the Interaction between Serotonin Synthesis by Tryptophan Hydroxylase and the Metabolic Homeostasis
Cited by: 11
Author(s): Suhyeon Park, Yumin Kim, Jibeom Lee, Jeong Yun Lee, Hail Kim, Sunjae Lee, Chang‐Myung Oh
Software Mentions: 2
Published: almost 5 years ago

10.7150/thno.60028

Targeting ATF4-dependent pro-survival autophagy to synergize glutaminolysis inhibition
Cited by: 27
Author(s): Shuting Han, Liyuan Zhu, Yiran Zhu, Yuan Meng, Jiaqiu Li, Ping Song, Neelum Aziz Yousafzai, Lifeng Feng, Miaoqin Chen, Yanmei Wang, Hongchuan Jin, Xian Wang
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms22020712

An Integrative Transcriptomic Analysis of Systemic Juvenile Idiopathic Arthritis for Identifying Potential Genetic Markers and Drug Candidates
Cited by: 3
Author(s): Daeun Kim, Jaeseung Song, Sora Lee, Junghyun Jung, Wonhee Jang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fnhum.2015.00421

Basal ganglia and cortical networks for sequential ordering and rhythm of complex movements
Cited by: 21
Author(s): Jeffery G. Bednark, Megan E. J. Campbell, Ross Cunnington
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-019-51525-x

Hematopoietic Npc1 mutation shifts gut microbiota composition in Ldlr−/− mice on a high-fat, high-cholesterol diet
Cited by: 3
Author(s): Tom Houben, John Penders, Yvonne Oligschlaeger, Inês Magro dos Reis, Marc Jan Bonder, Debby P. Y. Koonen, Jingyuan Fu, Marten H. Hofker, Ronit Shiri-Sverdlov
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2020.00816

EpitoCore: Mining Conserved Epitope Vaccine Candidates in the Core Proteome of Multiple Bacteria Strains
Cited by: 5
Author(s): Tayna S. Fiuza, J. A. S. Lima, Gustavo Souza
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21228730

Network Analysis of Gut Microbiome and Metabolome to Discover Microbiota-Linked Biomarkers in Patients Affected by Non-Small Cell Lung Cancer
Cited by: 60
Author(s): Pamela Vernocchi, Tommaso Gili, Federica Conte, Federica Del Chierico, Giorgia Conta, Alfredo Miccheli, Andrea Botticelli, Paola Paci, Guido Caldarelli, Marianna Nuti, Paolo Marchetti, Lorenza Putignani
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2017.00557

Predicting RTS,S Vaccine-Mediated Protection from Transcriptomes in a Malaria-Challenge Clinical Trial
Cited by: 49
Author(s): Robert A. van den Berg, Margherita Coccia, W. Ripley Ballou, Kent E. Kester, Christian F. Ockenhouse, Johan Vekemans, Erik Jongert, Arnaud M. Didierlaurent, Robbert G. van der Most
Software Mentions: 2
Published: over 8 years ago

10.3389/fimmu.2021.701656

The Transcriptomic Profile of Monocytes from Patients With Sjögren’s Syndrome Is Associated With Inflammatory Parameters and Is Mimicked by Circulating Mediators
Cited by: 11
Author(s): Ana P Lopes, Cornelis P. J. Bekker, Maarten R Hillen, Sofie L M Blokland, Anneline C. Hinrichs, Aridaman Pandit, Aike A. Kruize, Timothy R D J Radstake, Joël A G van Roon
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2021.647141

Multi-Omics Data Fusion via a Joint Kernel Learning Model for Cancer Subtype Discovery and Essential Gene Identification
Cited by: 10
Author(s): Jie Feng, Limin Jiang, Shuhao Li, Jijun Tang, Wen Li
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-019-55983-1

N-Octanoyl-Dopamine inhibits cytokine production in activated T-cells and diminishes MHC-class-II expression as well as adhesion molecules in IFNγ-stimulated endothelial cells
Cited by: 2
Author(s): Björn B. Hofmann, Nicolas Krapp, Yingchun Li, Carolina De La Torre, Marloes Sol, Jana D. Braun, M Kolibabka, Prama Pallavi, Bernhard K. Krämer, Benito A. Yard, Anna-Isabelle Kälsch
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2018.00590

PlantEAR: Functional Analysis Platform for Plant EAR Motif-Containing Proteins
Cited by: 34
Author(s): Jiaotong Yang, Yue Liu, Hengyu Yan, Tian Tian, Qi You, Liwei Zhang, Wenying Xu, Zhen Su
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms21113783

Genome-Wide Identification of Epigenetic Regulators in Quercus suber L.
Cited by: 6
Author(s): Helena G. Silva, Rómulo Sacramento Sobral, Alexandre Papadopoulos Magalhães, Leonor Morais-Cecílio, Maria Manuela Ribeiro Costa
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-58923-6

The Golgi Glycoprotein MGAT4D is an Intrinsic Protector of Testicular Germ Cells From Mild Heat Stress
Cited by: 8
Author(s): Ayodélé Akintayo, Meng Liang, Boris Bartholdy, Frank Batista, Jennifer Aguilan, Jillian Prendergast, Afsana Sabrin, Subha Sundaram, Pamela Stanley
Software Mentions: 2
Published: almost 6 years ago

10.3390/nu10091255

Lactobacillus acidophilus DDS-1 Modulates the Gut Microbiota and Improves Metabolic Profiles in Aging Mice
Cited by: 57
Author(s): Ravichandra Vemuri, Rajaraman Eri, Rohit Gundamaraju, Shakuntla Gondalia, Avinash V. Karpe, David J. Beale, Christopher Martoni, Rajaraman Eri
Software Mentions: 2
Published: about 7 years ago

10.3390/nu12103140

Statistical and Machine-Learning Analyses in Nutritional Genomics Studies
Cited by: 14
Author(s): Leila Khorraminezhad, Mickaël Leclercq, Arnaud Droit, Jean‐François Bilodeau, Iwona Rudkowska
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-94564-z

Interpretable deep recommender system model for prediction of kinase inhibitor efficacy across cancer cell lines
Cited by: 6
Author(s): Krzysztof Koras, Ewa Kizling, Dilafruz Juraeva, Eike Staub, Ewa Szczurek
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-59412-6

Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth
Cited by: 6
Author(s): Yvonne Mullins, Kate Keogh, David A. Kenny, A. K. Kelly, Padraig O’ Boyle, Sinéad M. Waters
Software Mentions: 2
Published: almost 6 years ago

10.3390/nu13061788

Hepatic Nfe2l2 Is Not an Essential Mediator of the Metabolic Phenotype Produced by Dietary Methionine Restriction
Cited by: 4
Author(s): Fei Han, Kirsten P. Stone, Sujoy Ghosh, Laura A. Forney, Landon C. Sims, Leighann Y Vincik, Thomas W. Gettys
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2019.01187

Identification of Microenvironment-Related Prognostic Genes in Bladder Cancer Based on Gene Expression Profile
Cited by: 31
Author(s): Yongxiang Luo, Guohua Zeng, Song Wu
Software Mentions: 2
Published: about 6 years ago

10.3390/s21134431

Improved Support Vector Machine Enabled Radial Basis Function and Linear Variants for Remote Sensing Image Classification
Cited by: 21
Author(s): Abdul Razaque, Mohamed Ben Haj Frej, Muder Almiani, Munif Alotaibi, Bandar Alotaibi
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms20246252

The Major Factors Causing the Microspore Abortion of Genic Male Sterile Mutant NWMS1 in Wheat (Triticum aestivum L.)
Cited by: 17
Author(s): Junchang Li, Jing Zhang, Huijuan Li, Hao Niu, Qiaoqiao Xu, Zhixin Jiao, Junhang An, Yumei Jiang, Qiaoyun Li, Jishan Niu
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms20174267

Ceritinib-Induced Regression of an Insulin-Like Growth Factor-Driven Neuroepithelial Brain Tumor
Cited by: 10
Author(s): Alexandra Russo, Claudia Paret, Francesca Alt, Jürgen Burhenne, Margaux Fresnais, Wolfgang Wagner, Martin Gläser, Hannah Bender, Sabrina Huprich, Patrick N. Harter, Katharina Filipski, Nadine Lehmann, Nora Backes, Lea Roth, Larissa Seidmann, Clemens Sommer, Marc A. Brockmann, Torsten Pietsch, Marie A. Neu, Arthur Wingerter, Jörg Faber
Software Mentions: 2
Published: about 6 years ago

10.3390/s141222643

Tree Crown Mapping in Managed Woodlands (Parklands) of Semi-Arid West Africa Using WorldView-2 Imagery and Geographic Object Based Image Analysis
Cited by: 43
Author(s): Martin Karlson, Heather Reese, Madelene Ostwald
Software Mentions: 2
Published: about 11 years ago

10.3389/fgene.2019.00633

FindTargetsWEB: A User-Friendly Tool for Identification of Potential Therapeutic Targets in Metabolic Networks of Bacteria
Cited by: 4
Author(s): Thiago Castanheira Merigueti, Marcia W. Carneiro, Ana Paula D'Allincourt Carvalho-Assef, Floriano Paes Silva, Fabrício Alves Barbosa Silva
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-73654-4

Extensive fragmentation and re-organization of transcription in Systemic Lupus Erythematosus
Cited by: 8
Author(s): Vasilis F. Ntasis, Nikolaos Panousis, Maria G Tektonidou, Emmanouil T. Dermitzakis, Dimitrios T. Boumpas, George Βertsias, Christoforos Nikolaou
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2020.626011

Effect of Metformin on Cardiac Metabolism and Longevity in Aged Female Mice
Cited by: 19
Author(s): Xudong Zhu, Wen Zen Shen, Zhu Liu, Shihao Sheng, Wei Xiong, Ruikun He, Xuguang Zhang, Likun Ma, Zhenyu Ju
Software Mentions: 2
Published: almost 5 years ago

10.3389/fimmu.2019.01087

Systems Immunology Characterization of Novel Vaccine Formulations for Mycoplasma hyopneumoniae Bacterins
Cited by: 28
Author(s): Anneleen Matthijs, Gaël Auray, Virginie Jakob, Obdulio García-Nicolás, Roman Othmar Braun, Irene Keller, Rémy Bruggman, Bert Devriendt, Filip Boyen, Carlos A. Guzmán, Annelies Michiels, Freddy Haesebrouck, Nicolas Collin, Christophe Barnier-Quer, Dominiek Maes, Artur Summerfield
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-97371-8

Compromised anti-tumor–immune features of myeloid cell components in chronic myeloid leukemia patients
Cited by: 1
Author(s): Ibuki Harada, Haruka Sasaki, Koichi Murakami, Akira Nishiyama, Jun Nakabayashi, Motohide Ichino, Tatsuya Miyazaki, Ken Kumagai, Kenji Matsumoto, Maki Hagihara, Wataru Kawase, Takayoshi Tachibana, Masatsugu Tanaka, T. Saito, Heiwa Kanamori, Hiroyuki Fujita, Shin Fujisawa, Hitoshi Nakajima, Tomohide Tamura
Software Mentions: 2
Published: about 4 years ago

10.3389/fnhum.2017.00650

Categorization for Faces and Tools—Two Classes of Objects Shaped by Different Experience—Differs in Processing Timing, Brain Areas Involved, and Repetition Effects
Cited by: 6
Author(s): Vladimir V. Kozunov, Anastasia Nikolaeva, Tatiana A. Stroganova
Software Mentions: 2
Published: almost 8 years ago

10.3389/fgene.2021.628041

Effects of Monochromatic Lighting During Incubation and Vaccination on the Splenic Transcriptome Profiles of Chicken
Cited by: 3
Author(s): Mohamed M. Ibrahim, Jill R. Nelson, Gregory S. Archer, Giridhar Athrey
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2020.526309

Comparative Transcriptome Analyses of Longissimus thoracis Between Pig Breeds Differing in Muscle Characteristics
Cited by: 9
Author(s): Chunbo Cai, Meng Li, Yanwei Zhang, Shu Meng, Yang Yang, Pengfei Gao, Xiaohong Guo, Guoqing Cao
Software Mentions: 2
Published: about 5 years ago

10.1100/2012/842727

Biomarker Identification for Prostate Cancer and Lymph Node Metastasis from Microarray Data and Protein Interaction Network Using Gene Prioritization Method
Cited by: 14
Author(s): Carlos Roberto Arias, Hsiang‐Yuan Yeh, Von-Wun Soo
Software Mentions: 2
Published: almost 14 years ago

10.3389/fgene.2020.00070

Hippocampal DNA Methylation in a Mouse Model of Fetal Alcohol Spectrum Disorder That Includes Maternal Separation Stress Only Partially Explains Changes in Gene Expression
Cited by: 11
Author(s): Bonnie Alberry, Shiva M. Singh
Software Mentions: 2
Published: almost 6 years ago

10.1155/2014/252489

The Influences of Canopy Species and Topographic Variables on Understory Species Diversity and Composition in Coniferous Forests
Cited by: 18
Author(s): Huasheng Hong, Qi Feng, Yufang Su
Software Mentions: 2
Published: almost 12 years ago

10.1128/mBio.01332-19

Epstein-Barr Virus Infection Promotes Epithelial Cell Growth by Attenuating Differentiation-Dependent Exit from the Cell Cycle
Cited by: 25
Author(s): Mark R. Eichelberg, Rene Welch, Jessie Guidry, Ahmed Ali, Makoto Ohashi, Kathleen R. Makielski, Kyle G. McChesney, Nicholas Van Sciver, Paul F. Lambert, Sündüz Keleş, Shannon C. Kenney, Rona S. Scott, Eric Johannsen
Software Mentions: 2
Published: over 6 years ago