Ecosyste.ms: Papers

10.1186/1471-2105-15-77

Predicting HIV-1 broadly neutralizing antibody epitope networks using neutralization titers and a novel computational method
Cited by: 11
Author(s): Mark C. Evans, Pham Phung, Agnès Paquet, Anvi Parikh, Christos J. Petropoulos, Terri Wrin, Mojgan Haddad
Software Mentions: 2
Published: over 10 years ago

10.3390/v10110649

Characterizing the Different Effects of Zika Virus Infection in Placenta and Microglia Cells
Cited by: 15
Author(s): Maria del Pilar Martinez Viedma, Brett E. Pickett
Software Mentions: 2
Published: about 6 years ago

10.7150/thno.60028

Targeting ATF4-dependent pro-survival autophagy to synergize glutaminolysis inhibition
Cited by: 27
Author(s): Shuting Han, Liyuan Zhu, Yiran Zhu, Yuan Meng, Jiaqiu Li, Ping Song, Neelum Aziz Yousafzai, Lifeng Feng, Miaoqin Chen, Yanmei Wang, Hongchuan Jin, Xian Wang
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-019-38989-7

Long Non-coding RNAs Coordinate Developmental Transitions and Other Key Biological Processes in Grapevine
Cited by: 29
Author(s): Garima Bhatia, Shailesh Sharma, Santosh Kumar Upadhyay, Kashmir Singh
Software Mentions: 2
Published: over 5 years ago

10.3390/metabo11080484

The Metabolic Signature of In Vitro Produced Bovine Embryos Helps Predict Pregnancy and Birth after Embryo Transfer
Cited by: 4
Author(s): Isabel Gimeno, Pablo García‐Manrique, S. Carrocera, Cristina López-Hidalgo, Luís Valledor, David Martín-González, E. Gómez
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-018-37489-4

Metabolism as an early predictor of DPSCs aging
Cited by: 26
Author(s): Dannie Macrin, Ammar Alghadeer, Yan Ting Zhao, Jason W. Miklas, Abdiasis M. Hussein, Damien Detraux, Aaron M. Robitaille, Anup Madan, Randall T. Moon, Yuliang Wang, Arikketh Devi, Julie Mathieu, Hannele Ruohola‐Baker
Software Mentions: 2
Published: almost 6 years ago

10.1186/bcr3689

Parity-related molecular signatures and breast cancer subtypes by estrogen receptor status
Cited by: 35
Author(s): Melissa Rotunno, Xuezheng Sun, Jonine D. Figueroa, Mark E. Sherman, Montserrat García-Closas, Paul S. Meltzer, Tyisha Williams, Sallie S. Schneider, D. Joseph Jerry, Xiaohong R. Yang, Melissa A. Troester
Software Mentions: 2
Published: almost 11 years ago

10.1111/pce.13078

Complex bud architecture and cell-specific chemical patterns enable supercooling of<i>Picea abies</i>bud primordia
Cited by: 34
Author(s): Edith Kuprian, Caspar Munkler, Anna Resnyak, Sonja Zimmermann, Tan D. Tuong, Notburga Gierlinger, Thomas Müller, David P. Livingston, Gilbert Neuner
Software Mentions: 2
Published: about 7 years ago

10.1186/s40478-019-0705-7

Transcriptome analysis of normal-appearing white matter reveals cortisol- and disease-associated gene expression profiles in multiple sclerosis
Cited by: 14
Author(s): Jeroen Melief, Marie Orre, Koen Bossers, C.G. van Eden, Karianne Schuurman, Matthew R. J. Mason, Joost Verhaagen, Jörg Hamann, Inge Huitinga
Software Mentions: 2
Published: over 5 years ago

10.1038/s41398-018-0306-4

Temporal proteomic profiling of postnatal human cortical development
Cited by: 17
Author(s): Michael S. Breen, Süreyya Özcan, Jordan M. Ramsey, Zichen Wang, Avi Ma’ayan, Nitin Rustogi, Michael G. Gottschalk, Maree J. Webster, Cynthia Shannon Weickert, Joseph D. Buxbaum, Sabine Bahn
Software Mentions: 2
Published: almost 6 years ago

10.1111/jcmm.15867

Mutations in the notch signalling pathway are associated with enhanced anti‐tumour immunity in colorectal cancer
Cited by: 14
Author(s): Fei Wang, Jie Long, Liang Li, Zhibin Zhao, Wei Fang, Yuan Yao, Wei Qiu, Zixin Wu, Qingqing Luo, Wei Liu, Yibo Quan, Zhe‐Xiong Lian, Jie Cao
Software Mentions: 2
Published: about 4 years ago

10.1007/s11103-021-01121-3

Genome-wide identification and characterization of long non-coding RNAs involved in flag leaf senescence of rice
Cited by: 18
Author(s): Xiaoping Huang, Hongyu Zhang, Qiang Wang, Rong Guo, Liping Wei, Haiyan Song, Weigang Kuang, Jiang-Lin Liao, Yongji Huang, Zhaohai Wang
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41398-019-0526-2

Circadian rest-activity patterns in bipolar disorder and borderline personality disorder
Cited by: 16
Author(s): Niall M. McGowan, Guy M. Goodwin, Amy C. Bilderbeck, Kate Saunders
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-11-474

Modulation of the maternal immune system by the pre-implantation embryo
Cited by: 112
Author(s): Caroline Walker, S. Meier, Mathew D Littlejohn, Klaus Lehnert, J.R. Roche, Murray D. Mitchell
Software Mentions: 2
Published: almost 15 years ago

10.1111/jcmm.15560

LncRNA‐mRNA expression profiles and functional networks in osteoclast differentiation
Cited by: 16
Author(s): Wenjie Liu, Zhaofeng Li, Zhaopeng Cai, Zhongyu Xie, Jinteng Li, Ming Li, Shuizhong Cen, Simin Tang, Guoyan Zheng, Guiwen Ye, Huilan Su, Shan Wang, Peng Wang, Huiyong Shen, Yanfeng Wu
Software Mentions: 2
Published: over 4 years ago

10.1186/ar4278

Transcriptomic signatures in cartilage ageing
Cited by: 58
Author(s): Mandy J. Peffers, Xuan Li, Peter Clegg
Software Mentions: 2
Published: almost 12 years ago

10.3389/fimmu.2020.00816

EpitoCore: Mining Conserved Epitope Vaccine Candidates in the Core Proteome of Multiple Bacteria Strains
Cited by: 5
Author(s): Tayna S. Fiuza, J. A. S. Lima, Gustavo Souza
Software Mentions: 2
Published: over 4 years ago

10.1016/j.tips.2007.09.008

Pharmacology under the microscope: the use of fluorescence correlation spectroscopy to determine the properties of ligand–receptor complexes
Cited by: 108
Author(s): Stephen J. Briddon, Stephen J. Hill
Software Mentions: 2
Published: almost 17 years ago

10.3390/plants8100422

Exploration of Floral Volatile Organic Compounds in Six Typical Lycoris taxa by GC-MS
Cited by: 13
Author(s): Tingting Shi, Yuanzheng Yue, Man Shi, Min Chen, Xia Yang, Lianggui Wang
Software Mentions: 2
Published: about 5 years ago

10.1186/s12915-021-01118-w

An increase of phosphatidylcholines in follicular fluid implies attenuation of embryo quality on day 3 post-fertilization
Cited by: 6
Author(s): Ju Wang, Wei Zheng, Shuoping Zhang, Kunlun Yan, Miao Jin, Huiling Hu, Zhen Ma, Fei Gong, Guangxiu Lu, Yan Ren, Liang Lin, Ge Lin, Liang Hu, Siqi Liu
Software Mentions: 2
Published: about 3 years ago

10.1111/jcmm.15357

CMap analysis identifies Atractyloside as a potential drug candidate for type 2 diabetes based on integration of metabolomics and transcriptomics
Cited by: 9
Author(s): Hailong Li, Xiaodong Shi, Hua Jiang, Junren Kang, Miao Yu, Qifei Li, Kang Yu, Zhengju Chen, Hui Pan, Wei Chen
Software Mentions: 2
Published: over 4 years ago

10.1111/jcmm.14856

STAT1 and its related molecules as potential biomarkers in <i>Mycobacterium tuberculosis</i> infection
Cited by: 41
Author(s): Xing‐hao Yi, Bo Zhang, Yurong Fu, Zhengjun Yi
Software Mentions: 2
Published: almost 5 years ago

10.1128/mBio.00937-19

Endogenous Retrovirus-Derived Long Noncoding RNA Enhances Innate Immune Responses via Derepressing RELA Expression
Cited by: 34
Author(s): Bin Zhou, Fei Qi, Fang–Jing Wu, Hongbo Nie, Yifan Song, Lu Shao, Jingxuan Han, Zhiyong Wu, Hexige Saiyin, Gang Wei, Penghua Wang, Ting Ni, Feng Qian
Software Mentions: 2
Published: about 5 years ago

10.1128/mBio.01332-19

Epstein-Barr Virus Infection Promotes Epithelial Cell Growth by Attenuating Differentiation-Dependent Exit from the Cell Cycle
Cited by: 25
Author(s): Mark R. Eichelberg, Rene Welch, Jessie Guidry, Ahmed Ali, Makoto Ohashi, Kathleen R. Makielski, Kyle G. McChesney, Nicholas Van Sciver, Paul F. Lambert, Sündüz Keleş, Shannon C. Kenney, Rona S. Scott, Eric Johannsen
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0246259

Prediction of 72-hour mortality in patients with extremely high serum C-reactive protein levels using a novel weighted average of risk scores
Cited by: 5
Author(s): Kai Saito, Hitoshi Sugawara, Kiyoshi Ichihara, Takushi X. Watanabe, Akira Ishii, Takeo Fukuchi
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12889-021-10283-0

Examining potential effects of non-occupational post-exposure prophylaxis (nPEP) on sexual behaviors of Chinese men who have sex with men: a cross-sectional study
Cited by: 0
Author(s): Haochu Li, Ran Wei, Jason J. Ong, Eun Sook Kim, Traci L. Weinstein, Xiaofu Ning, Wei Ma
Software Mentions: 2
Published: almost 4 years ago

10.7150/jca.47918

New novel non-MHC genes were identified for cervical cancer with an integrative analysis approach of transcriptome-wide association study
Cited by: 6
Author(s): Haimiao Chen, Ting Wang, Shuiping Huang, Ping Zeng
Software Mentions: 2
Published: almost 4 years ago

10.3389/fimmu.2021.701656

The Transcriptomic Profile of Monocytes from Patients With Sjögren’s Syndrome Is Associated With Inflammatory Parameters and Is Mimicked by Circulating Mediators
Cited by: 11
Author(s): Ana P Lopes, Cornelis P. J. Bekker, Maarten R Hillen, Sofie L M Blokland, Anneline C. Hinrichs, Aridaman Pandit, Aike A. Kruize, Timothy R D J Radstake, Joël A G van Roon
Software Mentions: 2
Published: over 3 years ago

10.15252/msb.20188202

Identification of an oncogenic network with prognostic and therapeutic value in prostate cancer
Cited by: 23
Author(s): Fiorella Magani, Eric R. Bray, María Julia Martínez, Ning Zhao, Valeria A. Copello, Laine M. Heidman, Stephanie Peacock, David J. Wiley, Gennaro D’Urso, Kerry L. Burnstein
Software Mentions: 2
Published: over 6 years ago

10.1038/s41380-018-0255-6

Integrative approach to sporadic Alzheimer’s disease: deficiency of TYROBP in cerebral Aβ amyloidosis mouse normalizes clinical phenotype and complement subnetwork molecular pathology without reducing Aβ burden
Cited by: 52
Author(s): Jean‐Vianney Haure‐Mirande, Minghui Wang, Mickaël Audrain, Tomas Fanutza, Soong Ho Kim, Szilvia Heja, Ben Readhead, Joel T. Dudley, Robert D. Blitzer, Eric E. Schadt, Bin Zhang, Sam Gandy, Michelle E. Ehrlich
Software Mentions: 2
Published: about 6 years ago

10.3390/plants9080977

Differences in Alternative Splicing between Yellow and Black-Seeded Rapeseed
Cited by: 9
Author(s): Lin Ai, Jinqi Ma, Fei Xu, Wen Xu, Huanhuan Jiang, Haoran Zhang, Cunmin Qu, Lijuan Wei, Jiana Li
Software Mentions: 2
Published: over 4 years ago

10.1007/s00204-016-1824-6

Information-dependent enrichment analysis reveals time-dependent transcriptional regulation of the estrogen pathway of toxicity
Cited by: 20
Author(s): Salil N. Pendse, Alexandra Maertens, Michael Rosenberg, Dipanwita Roy, Rick A. Fasani, Marguerite M. Vantangoli, Samantha J. Madnick, Kim Boekelheide, Albert J. Fornace, Shelly Odwin, James D. Yager, Thomas Hartung, Melvin E. Andersen, Patrick D. McMullen
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms20174267

Ceritinib-Induced Regression of an Insulin-Like Growth Factor-Driven Neuroepithelial Brain Tumor
Cited by: 10
Author(s): Alexandra Russo, Claudia Paret, Francesca Alt, Jürgen Burhenne, Margaux Fresnais, Wolfgang Wagner, Martin Gläser, Hannah Bender, Sabrina Huprich, Patrick N. Harter, Katharina Filipski, Nadine Lehmann, Nora Backes, Lea Roth, Larissa Seidmann, Clemens Sommer, Marc A. Brockmann, Torsten Pietsch, Marie A. Neu, Arthur Wingerter, Jörg Faber
Software Mentions: 2
Published: about 5 years ago

10.3389/fnhum.2017.00650

Categorization for Faces and Tools—Two Classes of Objects Shaped by Different Experience—Differs in Processing Timing, Brain Areas Involved, and Repetition Effects
Cited by: 6
Author(s): Vladimir V. Kozunov, Anastasia Nikolaeva, Tatiana A. Stroganova
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms20246252

The Major Factors Causing the Microspore Abortion of Genic Male Sterile Mutant NWMS1 in Wheat (Triticum aestivum L.)
Cited by: 17
Author(s): Junchang Li, Jing Zhang, Huijuan Li, Hao Niu, Qiaoqiao Xu, Zhixin Jiao, Junhang An, Yumei Jiang, Qiaoyun Li, Jishan Niu
Software Mentions: 2
Published: almost 5 years ago

10.1007/s10858-015-9908-9

Development of a method for reconstruction of crowded NMR spectra from undersampled time-domain data
Cited by: 3
Author(s): Takumi Ueda, Chie Yoshiura, Masahiko Matsumoto, Yutaka Kofuku, Junya Okude, Kazunori Kondo, Yutaro Shiraishi, Koh Takeuchi, Ichio Shimada
Software Mentions: 2
Published: almost 10 years ago

10.1002/cam4.3400

Immune‐related signature predicts the prognosis and immunotherapy benefit in bladder cancer
Cited by: 29
Author(s): Yejinpeng Wang, Changhong Liang, Mengxue Yu, Yayun Fang, Kaiyu Qian, Gang Wang, Lingao Ju, Yu Xiao, Xinghuan Wang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12929-021-00751-5

AUY922 induces retinal toxicity through attenuating TRPM1
Cited by: 6
Author(s): Che-Hung Shen, Chi-Hsun Hsieh, Kuan-Ying Jiang, Chih‐Yu Lin, Nai‐Jung Chiang, Tingwei Li, Chen‐Tung Yen, Wan-Ju Chen, Daw-Yang Hwang, Li-Tzong Chen
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pbio.2002176

Dynamic transcriptome changes during adipose tissue energy expenditure reveal critical roles for long noncoding RNA regulators
Cited by: 67
Author(s): Zhiqiang Bai, Xiaoran Chai, Myeong Jin Yoon, Hye-Jin Kim, Kinyui Alice Lo, Zhichun Zhang, Dan Xu, Diana Teh Chee Siang, Arcinas Camille Esther Walet, Shaohai Xu, Sook-Yoong Chia, Peng Chen, Hongyuan Yang, Sujoy Ghosh, Li Sun
Software Mentions: 2
Published: over 7 years ago

10.1002/1878-0261.12871

Interaction of transcription factor AP‐2 gamma with proto‐oncogene PELP1 promotes tumorigenesis by enhancing RET signaling
Cited by: 13
Author(s): Junhao Liu, Zexuan Liu, Mengxing Li, Weiwei Tang, Uday P. Pratap, Yiliao Luo, Kristin A. Altwegg, Xiaonan Li, Yi Zou, Hong Zhu, Gangadhara R. Sareddy, Suryavathi Viswanadhapalli, Ratna K. Vadlamudi
Software Mentions: 2
Published: almost 4 years ago

10.1186/1423-0127-17-S1-S38

A maternal low protein diet has pronounced effects on mitochondrial gene expression in offspring liver and skeletal muscle; protective effect of taurine
Cited by: 40
Author(s): Ole Hartvig Mortensen, Hanne Olsen, Lis Frandsen, Peter E. Nielsen, Finn Cilius Nielsen, Niels Grunnet, Bjørn Quistorff
Software Mentions: 2
Published: almost 15 years ago

10.1074/jbc.RA118.003280

A dynamic transcriptomic atlas of cytokine-induced killer cells
Cited by: 7
Author(s): Mingyao Meng, Lin Li, Ruhong Li, Wenju Wang, Yang Chen, Youhua Xie, Rui Han, Kai Zhu, Wenwen Huang, Lili Yang, Shuo Li, Jianlin Shi, Wenyong Tan, Hui Gao, Yiyi Zhao, Yang Li, Tan Jinquan, Zongliu Hou
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms21113783

Genome-Wide Identification of Epigenetic Regulators in Quercus suber L.
Cited by: 6
Author(s): Helena G. Silva, Rómulo Sacramento Sobral, Alexandre Papadopoulos Magalhães, Leonor Morais-Cecílio, Maria Manuela Ribeiro Costa
Software Mentions: 2
Published: over 4 years ago

10.4172/1948-593X.1000120

Systemic Transcriptional Alterations of Innate and Adaptive Immune Signaling Pathways in Atherosclerosis, Ischemia Stroke, and Myocardial Infarction
Cited by: 11
Author(s): Taura L. Barr, Reynal L VanGilder, Ryan Seiberg, Ashely Petrone, Paul D. Chantler, Chiang-Ching Huang
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0170458

Transcriptome-wide co-expression analysis identifies LRRC2 as a novel mediator of mitochondrial and cardiac function
Cited by: 10
Author(s): Chris McDermott-Roe, Marion Leleu, Glenn C. Rowe, Oleg Palygin, John D. Bukowy, Judy Kuo, Monika Rech, Steffie Hermans-Beijnsberger, S. Schaefer, Eleonora Adami, Esther E. Creemers, Matthias Heinig, Blanche Schroen, Zoltàn Arany, Enrico Petretto, Aron M. Geurts
Software Mentions: 2
Published: almost 8 years ago

10.1002/1878-0261.12561

miRNA expression changes during the course of neoadjuvant bevacizumab and chemotherapy treatment in breast cancer
Cited by: 27
Author(s): Evita M. Lindholm, Miriam Ragle Aure, Mads H. Haugen, Kristine Kleivi Sahlberg, Vessela N. Kristensen, Daniel J. H. Nebdal, Anne‐Lise Børresen‐Dale, Ole Christian Lingjærde, Olav Engebraaten
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21228730

Network Analysis of Gut Microbiome and Metabolome to Discover Microbiota-Linked Biomarkers in Patients Affected by Non-Small Cell Lung Cancer
Cited by: 60
Author(s): Pamela Vernocchi, Tommaso Gili, Federica Conte, Federica Del Chierico, Giorgia Conta, Alfredo Miccheli, Andrea Botticelli, Paola Paci, Guido Caldarelli, Marianna Nuti, Paolo Marchetti, Lorenza Putignani
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pbio.3000324

DPPA2/4 and SUMO E3 ligase PIAS4 opposingly regulate zygotic transcriptional program
Cited by: 71
Author(s): Yao-Long Yan, Chao Zhang, Jun Hao, Xuelian Wang, Ming Jia, Mi Li, Jie Na, Xinli Hu, Yangming Wang
Software Mentions: 2
Published: over 5 years ago

10.1111/1365-2656.12630

Analysing animal social network dynamics: the potential of stochastic actor-oriented models
Cited by: 39
Author(s): David N. Fisher, Amiyaal Ilany, Matthew J. Silk, Tom Tregenza
Software Mentions: 2
Published: almost 8 years ago

10.1002/1878-0261.12014

Gene expression panel predicts metastatic‐lethal prostate cancer outcomes in men diagnosed with clinically localized prostate cancer
Cited by: 22
Author(s): Rohina Rubicz, Shanshan Zhao, Jonathan L. Wright, Ilsa M. Coleman, Catherine S. Grasso, Milan S. Geybels, Amy Leonardson, Suzanne Kolb, Craig April, Marina Bibikova, Dean A. Troyer, Raymond S. Lance, Daniel W. Lin, Elaine A. Ostrander, Peter S. Nelson, Jie Fan, Ziding Feng, Janet L. Stanford
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms22020712

An Integrative Transcriptomic Analysis of Systemic Juvenile Idiopathic Arthritis for Identifying Potential Genetic Markers and Drug Candidates
Cited by: 3
Author(s): Daeun Kim, Jaeseung Song, Sora Lee, Junghyun Jung, Wonhee Jang
Software Mentions: 2
Published: almost 4 years ago

10.1172/jci.insight.137926

Human Tregs at the materno-fetal interface show site-specific adaptation reminiscent of tumor Tregs
Cited by: 19
Author(s): Judith Wienke, Laura Brouwers, Leone M. van der Burg, Michal Mokrý, Rianne C. Scholman, Floris Groenendaal, Bas B. van Rijn, Femke van Wijk
Software Mentions: 2
Published: about 4 years ago

10.3390/metabo10080325

Comparative Metabolomic Analysis of Dendrobium officinale under Different Cultivation Substrates
Cited by: 23
Author(s): Si-Min Zuo, Hai‐Dong Yu, Weimin Zhang, Qiuping Zhong, Wenxue Chen, Yong‐Huan Yun, Haiming Chen
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1005617

Relating dynamic brain states to dynamic machine states: Human and machine solutions to the speech recognition problem
Cited by: 7
Author(s): Cai Wingfield, Li Su, Xunying Liu, Chao Zhang, Philip C. Woodland, Andrew Thwaites, Elisabeth Fonteneau, William D. Marslen–Wilson
Software Mentions: 2
Published: about 7 years ago

10.1002/jbm4.10195

Body Weight and Body Mass Index Influence Bone Mineral Density in Late Adolescence in a Two‐Year Follow‐Up Study. The Tromsø Study: Fit Futures
Cited by: 2
Author(s): Ole Andreas Nilsen, Luai A. Ahmed, Anne Winther, Tore Christoffersen, Gyrd Thrane, Elin Kristin Evensen, Anne‐Sofie Furberg, Guri Grimnes, Elaine Dennison, Nina Emaus
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00070-16

Farnesoid X Receptor Signaling Shapes the Gut Microbiota and Controls Hepatic Lipid Metabolism
Cited by: 93
Author(s): Limin Zhang, Cen Xie, Robert G. Nichols, Siu Hung Joshua Chan, Changtao Jiang, Ruixin Hao, Philip B. Smith, Jingwei Cai, Margaret Simons, Emmanuel Hatzakis, Costas D. Maranas, Frank J. Gonzalez, Andrew D. Patterson
Software Mentions: 2
Published: about 8 years ago

10.1002/embr.201337642

Extensive regulation of the non‐coding transcriptome by hypoxia: role of <scp>HIF</scp> in releasing paused <scp>RNA</scp> pol2
Cited by: 138
Author(s): Hani Choudhry, Johannes Schödel, Spyros Oikonomopoulos, Carme Camps, Steffen Grampp, Adrian L. Harris, Peter J. Ratcliffe, Jiannis Ragoussis, David R. Mole
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12962-018-0124-9

Combining A4R and MCDA in priority setting for health
Cited by: 4
Author(s): Norman Daniels
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-29614-0

Quantitative Profiling of the Lymph Node Clearance Capacity
Cited by: 34
Author(s): Cristina C. Clement, Wei Wang, Monika Dzieciątkowska, Marco Cortese, Kirk C. Hansen, Aniuska Becerra, Sangeetha Thangaswamy, Irina Tsoy Nizamutdinova, Jee Young Moon, Lawrence J. Stern, Anatoliy A. Gashev, David C. Zawieja, Laura Santambrogio
Software Mentions: 2
Published: over 6 years ago

10.1098/rspb.2021.0181

Craniofacial development illuminates the evolution of nightbirds (Strisores)
Cited by: 9
Author(s): Guillermo Navalón, Sergio M. Nebreda, Jen A. Bright, Matteo Fabbri, Roger B. J. Benson, Bhart Anjan S. Bhullar, Jesús Marugán‐Lobón, Emily J. Rayfield
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.5381

Drift versus selection as drivers of phenotypic divergence at small spatial scales: The case of Belgjarskógur threespine stickleback
Cited by: 10
Author(s): Mathew Seymour, Katja Räsänen, Bjarni K. Kristjánsson
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.7107

The influence of nutrient enrichment on riverine food web function and stability
Cited by: 10
Author(s): Adam D. Canning, Russell G. Death
Software Mentions: 2
Published: almost 4 years ago

10.1073/pnas.2014529117

<i>Datura</i> quids at Pinwheel Cave, California, provide unambiguous confirmation of the ingestion of hallucinogens at a rock art site
Cited by: 21
Author(s): David Robinson, Kelly Brown, Moira McMenemy, Lynn Dennany, Matthew J. Baker, Pamela Allan, Caroline Cartwright, Julienne Bernard, Fraser Sturt, Elena Kotoula, Christopher S. Jazwa, Kristina M. Gill, Patrick Randolph-Quinney, Thomas Ash, Clare Bedford, Devlin Gandy, Matthew Armstrong, James Miles, David B. Haviland
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-018-29085-3

Menthol, a unique urinary volatile compound, is associated with chronic inflammation in interstitial cystitis
Cited by: 17
Author(s): Muhammad Shahid, Min Young Lee, Austin Yeon, Eunho Cho, Vikram Sairam, Luis Valdiviez, Sungyong You, Jayoung Kim
Software Mentions: 2
Published: over 6 years ago

10.1073/pnas.2025539118

The p53 transcriptional response across tumor types reveals core and senescence-specific signatures modulated by long noncoding RNAs
Cited by: 13
Author(s): Ephrath Tesfaye, Elena Martínez-Terroba, Jordan Bendor, Lauren Winkler, Christiane Olivero, Kevin Chen, David M. Feldser, Jesse R. Zamudio, Nadya Dimitrova
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.2648

Morphological divergence of lake and stream<i>Phoxinus</i>of Northern Italy and the Danube basin based on geometric morphometric analysis
Cited by: 24
Author(s): David Ramler, Anja Palandačić, Giovanni B. Delmastro, Josef Wanzenböck, Harald Ahnelt
Software Mentions: 2
Published: almost 8 years ago

10.1126/sciadv.aax0301

Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases
Cited by: 84
Author(s): Lucija Klarić, Yakov A. Tsepilov, Chloe Stanton, Massimo Mangino, Timo Tõnis Sikka, Tõnu Esko, Eugene D Pakhomov, Perttu Salo, Joris Deelen, Stuart J. McGurnaghan, Toma Keser, Frano Vučković, Ivo Ugrina, Jasminka Krištić, Ivan Gudelj, Tamara Štambuk, Rosina Plomp, Maja Pučić‐Baković, Tamara Pavić, Marija Vilaj, Irena Trbojević‐Akmačić, Camilla Drake, Paula Dobrinić, Jelena Mlinarec, Barbara Jelušić, Anne Richmond, Maria Timofeeva, Alexander K. Grishchenko, Julia Dmitrieva, Mairead Lesley Bermingham, Sodbo Sharapov, Susan M. Farrington, Evropi Τheodoratou, Hae‐Won Uh, Marian Beekman, Eline Slagboom, Édouard Louis, Michel Georges, Manfred Wuhrer, Helen M. Colhoun, Malcolm G. Dunlop, Markus Perola, Krista Fischer, Ozren Polašek, Harry Campbell, Igor Rudan, James F. Wilson, Vlatka Zoldoš, Véronique Vitart, Tim D. Spector, Yurii S. Aulchenko, Gordan Lauc, Caroline Hayward
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-018-29088-0

Endemic fish species structuring oceanic intertidal reef assemblages
Cited by: 15
Author(s): Ryan Andrades, José Amorim Reis‐Filho, Raphael Mariano Macieira, Tommaso Giarrizzo, Jean‐Christophe Joyeux
Software Mentions: 2
Published: over 6 years ago

10.3390/e22091030

TMEA: A Thermodynamically Motivated Framework for Functional Characterization of Biological Responses to System Acclimation
Cited by: 5
Author(s): Kevin Schneider, Benedikt Venn, Timo Mühlhaus
Software Mentions: 2
Published: about 4 years ago

10.1186/s40169-017-0174-1

Post‐zygotic genomic changes in glutamate and dopamine pathway genes may explain discordance of monozygotic twins for schizophrenia
Cited by: 11
Author(s): Christina A Castellani, M.G. Melka, Jane L. Gui, Anthony J. Gallo, Richard O’Reilly, Shiva M. Singh
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41388-018-0326-9

Transcription factor activating protein 4 is synthetically lethal and a master regulator of MYCN-amplified neuroblastoma
Cited by: 21
Author(s): Shuobo Boboila, Gonzalo Lopez, Jiyang Yu, Debarshi Banerjee, Angela Kadenhe-Chiweshe, Eileen Connolly, Jessica J. Kandel, Presha Rajbhandari, José M. Silva, Andrea Califano, Darrell J. Yamashiro
Software Mentions: 2
Published: over 6 years ago

10.3390/proteomes7030030

Network Analysis of a Membrane-Enriched Brain Proteome across Stages of Alzheimer’s Disease
Cited by: 16
Author(s): Lenora Higginbotham, Eric B. Dammer, Duc M. Duong, Erica Modeste, Thomas J. Montine, James J. Lah, Aĺlan I. Levey
Software Mentions: 2
Published: about 5 years ago

10.1242/dmm.017889

Acute upregulation of hedgehog signaling in mice causes differential effects on cranial morphology
Cited by: 11
Author(s): Nandini Singh, Tara Dutka, Benjamin Devenney, Kazuhiko Kawasaki, Roger H. Reeves, Joan T. Richtsmeier
Software Mentions: 2
Published: almost 10 years ago

10.1242/dmm.033043

SIL1, the ER Hsp70 co-chaperone, plays a critical role in maintaining skeletal muscle proteostasis and physiology
Cited by: 13
Author(s): Viraj P. Ichhaporia, Jieun Kim, Kanisha Kavdia, Peter Vogel, Linda H. Horner, Sharon Frase, Linda M. Hendershot
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41389-020-0209-0

PDK1 promotes ovarian cancer metastasis by modulating tumor-mesothelial adhesion, invasion, and angiogenesis via α5β1 integrin and JNK/IL-8 signaling
Cited by: 37
Author(s): Michelle K.Y. Siu, Yuxin Jiang, Jingjing Wang, Thomas Leung, Siew‐Fei Ngu, Annie Nga‐Yin Cheung, Hextan Y.S. Ngan, Ki Chan
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41389-020-0239-7

MeCP2 facilitates breast cancer growth via promoting ubiquitination-mediated P53 degradation by inhibiting RPL5/RPL11 transcription
Cited by: 25
Author(s): Dongdong Tong, Jing Zhang, Xiaofei Wang, Qian Li, Li Ying Liu, Juan Yang, Bo Guo, Lei Ni, Lingyu Zhao, Chen Huang
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-018-23588-9

Two-dimensional analysis provides molecular insight into flower scent of Lilium ‘Siberia’
Cited by: 20
Author(s): Shaochuan Shi, Guangyou Duan, Dandan Li, Jie Wu, Xintong Liu, Hong Bo, Mingfang Yi, Zhao Zhang
Software Mentions: 2
Published: over 6 years ago

10.1155/2007/58253

Canonical Decomposition of Ictal Scalp EEG and Accurate Source Localisation: Principles and Simulation Study
Cited by: 36
Author(s): Maarten De Vos, Lieven De Lathauwer, Bart Vanrumste, Sabine Van Huffel, Wim Van Paesschen
Software Mentions: 2
Published: almost 18 years ago

10.1038/srep24350

Differential neural mechanisms for early and late prediction error detection
Cited by: 12
Author(s): Rahim Malekshahi, Anil K. Seth, Amalia Papanikolaou, Zenon Mathews, Niels Birbaumer, Paul F. M. J. Verschure, Andrea Caria
Software Mentions: 2
Published: over 8 years ago

10.1002/ece3.6762

Genetic diversity, population structure, and gene flow analysis of lowland bamboo [<i>Oxytenanthera abyssinica</i> (A. Rich.) Munro] in Ethiopia
Cited by: 16
Author(s): Oumer Abdie Oumer, Kifle Dagne, Tileye Feyissa, Kassahun Tesfaye, Jayaraman Durai, Muhammad Zeeshan Hyder
Software Mentions: 2
Published: about 4 years ago

10.3390/epigenomes4040024

Simplified MethylRAD Sequencing to Detect Changes in DNA Methylation at Enhancer Elements in Differentiating Embryonic Stem Cells
Cited by: 3
Author(s): Debapriya Saha, Allison B Norvil, Nadia A. Lanman, Humaira Gowher
Software Mentions: 2
Published: about 4 years ago

10.1093/jmcb/mjz092

Isoform-specific involvement of Brpf1 in expansion of adult hematopoietic stem and progenitor cells
Cited by: 4
Author(s): Qiuping He, Ming Hong, Jincan He, Weixin Chen, Meng Zhao, Wei Zhao
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-018-19908-8

A dynamic allosteric pathway underlies Rad50 ABC ATPase function in DNA repair
Cited by: 20
Author(s): Zachary K. Boswell, Samiur Rahman, Marella D. Canny, Michael P. Latham
Software Mentions: 2
Published: almost 7 years ago

10.1007/s00894-015-2635-z

Pressure-imposed changes of benzoic acid crystals
Cited by: 8
Author(s): Piotr Cysewski
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms20030602

Human Brain Endothelial CXCR2 is Inflammation-Inducible and Mediates CXCL5- and CXCL8-Triggered Paraendothelial Barrier Breakdown
Cited by: 24
Author(s): Axel Haarmann, Michael K. Schuhmann, Christine Silwedel, Camelia‐Maria Monoranu, Guido Stoll, Mathias Buttmann
Software Mentions: 2
Published: almost 6 years ago

10.1007/s12031-018-1206-z

Biomarker and Drug Target Discovery Using Quantitative Proteomics Post-Intracerebral Hemorrhage Stroke in the Rat Brain
Cited by: 16
Author(s): Shuixiang Deng, Sheng-Ya Feng, Wei Wang, Feng Zhao, Yi Gong
Software Mentions: 2
Published: about 6 years ago

10.1186/s13014-019-1433-7

Evaluation and improvement the safety of total marrow irradiation with helical tomotherapy using repeat failure mode and effects analysis
Cited by: 5
Author(s): Jiemin Shen, Xiaoyong Wang, Di Deng, Jian Ping Gong, Kang Tan, Hongli Zhao, Zhirong Bao, Jian‐Kang Xiao, An Liu, Yunfeng Zhou, Hui Liu, Conghua Xie
Software Mentions: 2
Published: almost 5 years ago

10.1002/rcm.8571

A complex matrix characterization approach, applied to cigarette smoke, that integrates multiple analytical methods and compound identification strategies for non‐targeted liquid chromatography with high‐resolution mass spectrometry
Cited by: 17
Author(s): Daniel Arndt, Christian J. Wachsmuth, Christoph Buchholz, M.C. Bentley
Software Mentions: 2
Published: almost 5 years ago

10.1038/s42003-020-1009-y

Population genomics of Staphylococcus pseudintermedius in companion animals in the United States
Cited by: 23
Author(s): Joshua T. Smith, Sharlene Amador, Colin J. McGonagle, David B. Needle, R. J. Gibson, Cheryl P. Andam
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-020-0821-8

New insight into the molecular mechanism of colour differentiation among floral segments in orchids
Cited by: 60
Author(s): Bai Jun Li, Bao Qiang Zheng, Jie Yu Wang, Wen Chieh Tsai, Hsiao‐Chi Lu, Long−Hai Zou, Wei Xiao, Di Yang Zhang, Hong Juan Qiao, Zhong‐Jian Liu, Yan Wang
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms16036496

Favourable IFNL3 Genotypes Are Associated with Spontaneous Clearance and Are Differentially Distributed in Aboriginals in Canadian HIV-Hepatitis C Co-Infected Individuals
Cited by: 5
Author(s): Nasheed Moqueet, Claire Infante–Rivard, Robert W. Platt, Jim Young, Curtis Cooper, Mark Hull, Sharon Walmsley, Marina B. Klein
Software Mentions: 2
Published: over 9 years ago

10.1016/j.coisb.2019.04.002

Footprint-based functional analysis of multiomic data
Cited by: 32
Author(s): Aurélien Dugourd, Julio Sáez-Rodríguez
Software Mentions: 2
Published: over 5 years ago

10.1242/dmm.039578

Reversion of tumor hepatocytes to normal hepatocytes during liver tumor regression in an oncogene transgenic zebrafish model
Cited by: 12
Author(s): Yan Li, Ira Agrawal, Zhiyuan Gong
Software Mentions: 2
Published: almost 6 years ago

10.3892/etm.2013.1392

A study exploring critical pathways in clear cell renal cell carcinoma
Cited by: 12
Author(s): Zisan Zeng, Tengcheng Que, Jiange Zhang, Yanling Hu
Software Mentions: 2
Published: about 11 years ago

10.7554/eLife.47430

TLE3 loss confers AR inhibitor resistance by facilitating GR-mediated human prostate cancer cell growth
Cited by: 21
Author(s): Sander Palit, Daniël J. Vis, Suzan Stelloo, Cor Lieftink, Stefan Prekovic, Elise M. Bekers, Ingrid Hofland, Tonći Šuštić, Liesanne Wolters, Roderick L. Beijersbergen, Andries M. Bergman, Balázs Győrffy, Lodewyk F.A. Wessels, Wilbert Zwart, Michiel S. van der Heijden
Software Mentions: 2
Published: almost 5 years ago

10.1038/s42003-019-0618-9

Single-cell RNA-sequencing analysis of estrogen- and endocrine-disrupting chemical-induced reorganization of mouse mammary gland
Cited by: 28
Author(s): Noriko Kanaya, Gregory Chang, Xiwei Wu, Kohei Saeki, Lauren Bernal, Hyun-Jeong Shim, Jinhui Wang, Charles Warden, Takuro Yamamoto, Jay Li, June-Soo Park, Timothy W. Synold, Steve Vonderfecht, Michele Rakoff, Susan L. Neuhausen, Shiuan Chen
Software Mentions: 2
Published: about 5 years ago

10.1038/srep34712

Hyperoxaluria leads to dysbiosis and drives selective enrichment of oxalate metabolizing bacterial species in recurrent kidney stone endures
Cited by: 76
Author(s): Mangesh V. Suryavanshi, Shrikant Bhute, Swapnil Jadhav, Meenakshi Bhatia, Rahul P. Gune, Yogesh S. Shouche
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.59980

Integration of genomics and transcriptomics predicts diabetic retinopathy susceptibility genes
Cited by: 15
Author(s): Andrew D. Skol, Su-Young Jung, Ana Marija Sokovic, Siquan Chen, Sarah Fazal, Olukayode Sosina, Poulami P Borkar, Amy Lin, Maria Sverdlov, Dingcai Cao, Anand Swaroop, Ionut Bebu, Dcct, Barbara Elaine Stranger, Michael A. Grassi
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-017-12675-y

Multiple regulatory mechanisms of the biological function of NRF3 (NFE2L3) control cancer cell proliferation
Cited by: 59
Author(s): A. M. Masudul Azad Chowdhury, Hiroki Katoh, Atsushi Hatanaka, Hiroko Iwanari, Nanami Nakamura, Takao Hamakubo, Tohru Natsume, Tsuyoshi Waku, Akira Kobayashi
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-017-12226-5

Filtering effect of temporal niche fluctuation and amplitude of environmental variations on the trait-related flowering patterns: lesson from sub-Mediterranean grasslands
Cited by: 13
Author(s): Andrea Catorci, Karina Piermarteri, Károly Penksza, Judit Házi, Federico Maria Tardella
Software Mentions: 2
Published: about 7 years ago