pypi: analysis | Projects | Ecosyste.ms: Papers

10.1186/s12864-019-5495-6

A unique insight into the MiRNA profile during genital chlamydial infection
Cited by: 13
Author(s): Ifeyinwa Benyeogor, Tankya Simoneaux, Yuehao Wu, Stephanie Lundy, Zenas George, Khamia Ryans, Danielle McKeithen, Roshan Pais, Debra Ellerson, W. Walter Lorenz, Tolulope Omosun, Winston E. Thompson, Francis O. Eko, Carolyn M. Black, Uriel Blás-Machado, Joseph U. Igietseme, Qing He, Yusuf Omosun
Software Mentions: 2
Published: over 7 years ago

10.3389/fphar.2020.00952

Hypo-Osmotic Loading Induces Expression of IL-6 in Nucleus Pulposus Cells of the Intervertebral Disc Independent of TRPV4 and TRPM7
Cited by: 8
Author(s): Aleksandra Sadowska, Birsen Altinay, Wolfgang Hitzl, Stephen J. Ferguson, Karin Wuertz‐Kozak
Software Mentions: 2
Published: about 6 years ago

10.3389/fphar.2019.01310

Probing the Druggablility on the Interface of the Protein–Protein Interaction and Its Allosteric Regulation Mechanism on the Drug Screening for the CXCR4 Homodimer
Cited by: 5
Author(s): Liting Shen, Yuan Yuan, Yanzhi Guo, Menglong Li, Chuan Li, Xuemei Pu
Software Mentions: 2
Published: almost 7 years ago

10.3389/fphar.2020.00357

Prospective Risk Assessment of Medicine Shortages in Europe and Israel: Findings and Implications
Cited by: 21
Author(s): Nenad Miljković, Brian Godman, Milena Kovačević, Piera Polidori, L Tzimis, Torsten Hoppe-Tichy, M. Saar, Ioan Antofie, L Horváth, Thomas De Rijdt, Róbert György Vida, Elena Kkolou, David Preece, Biljana Tubić, Joan Peppard, Alicia Martínez, Cristina García Yubero, Raymond N. Haddad, Dragana Rajinac, Pavle Zelić, Helena Jenzer, Franci Tartar, Gunda Gitler, Martina Jeske, M Davidescu, Guillaume Béraud, Darija Kuruc-Poje, Kristine Sakstrup Haag, Hanne Fischer, Inese Sviestiņa, Gordana Ljubojević, Anne Markestad, Vesna Vujić‐Aleksić, Lana Nežić, Anica Crkvenčić, Johanna Linnolahti, Bogdan Ašanin, Nataša Duborija-Kovačević, Tomasz Bochenek, Isabelle Huys, Branislava Miljković
Software Mentions: 2
Published: over 6 years ago

10.3389/fphar.2020.00932

1H NMR-Based Metabolomics Coupled With Molecular Docking Reveal the Anti-Diabetic Effects and Potential Active Components of Berberis vernae on Type 2 Diabetic Rats
Cited by: 22
Author(s): Qi Li, Chengcheng Zhao, Yunsen Zhang, Huan Du, Tong Xu, Xinmei Xu, Jing Zhang, Tingting Kuang, Xiulan Lai, Gang Fan
Software Mentions: 2
Published: about 6 years ago

10.1016/j.isci.2020.101497

Genome of Tetraploid Fish Schizothorax o'connori Provides Insights into Early Re-diploidization and High-Altitude Adaptation
Cited by: 23
Author(s): Shijun Xiao, Zhenbo Mou, Dingding Fan, Zhou He, Ming Zou, Yu Zeng, Chaowei Zhou, Ruibin Yang, Jiaqi Liu, Shilin Zhu, Yajuan Li, Yanchao Liu, Fei Liu, Wanliang Wang, Benhe Zeng, Hong Li, Di Wang, Haiping Li
Software Mentions: 2
Published: almost 6 years ago

10.3389/fphys.2018.00215

Mechanistic Role of Reactive Oxygen Species and Therapeutic Potential of Antioxidants in Denervation- or Fasting-Induced Skeletal Muscle Atrophy
Cited by: 62
Author(s): Jiaying Qiu, Qian Fang, Tongtong Xu, Changyue Wu, Lai Xu, Lingbin Wang, Xiaoming Yang, Shu Yu, Qi Zhang, Fei Ding, Hualin Sun
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2164-14-436

Deciphering the response of Mycobacterium smegmatis to nitrogen stress using bipartite active modules
Cited by: 15
Author(s): Katrina Williams, William A Bryant, Victoria A Jenkins, Geraint Barton, Adam A. Witney, John W. Pinney, Brian D. Robertson
Software Mentions: 2
Published: about 13 years ago

10.3389/fphys.2017.01010

Weighted Gene Co-expression Network Analysis Identifies FKBP11 as a Key Regulator in Acute Aortic Dissection through a NF-kB Dependent Pathway
Cited by: 31
Author(s): Tao Wang, Xingwei He, Xintian Liu, Yujian Liu, Wenjun Zhang, Qiang Huang, Wanjun Liu, Luyang Xiong, Rong Tan, Hongjie Wang, Hesong Zeng
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2016.00490

Genome-Wide Identification and Function Analyses of Heat Shock Transcription Factors in Potato
Cited by: 50
Author(s): Ruimin Tang, Wenjiao Zhu, Xiao‐Yan Song, Xingzhong Lin, Jinghui Cai, Man Wang, Qing Yang
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2017.00080

Digital Gene Expression Analysis Provides Insight into the Transcript Profile of the Genes Involved in Aporphine Alkaloid Biosynthesis in Lotus (Nelumbo nucifera)
Cited by: 13
Author(s): Mei Yang, Liming Zhu, Ling Li, Juanjuan Li, Liming Xu, Jia‐Xun Feng, Yanling Liu
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-019-5722-1

Genetic mechanism underlying sexual plasticity and its association with colour patterning in zebrafish (Danio rerio)
Cited by: 14
Author(s): Shahrbanou Hosseini, Ngoc-Thuy Ha, Henner Simianer, Clemens Falker‐Gieske, Bertram Brenig, André Franke, Gabriele Hörstgen‐Schwark, Jens Tetens, Sebastian Herzog, Ahmad Sharifi
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2018.00056

Auxin-to-Gibberellin Ratio as a Signal for Light Intensity and Quality in Regulating Soybean Growth and Matter Partitioning
Cited by: 53
Author(s): Feng Yang, Yuanfang Fan, Xiaoling Wu, Yajiao Cheng, Qinlin Liu, Lingyang Feng, Junxu Chen, Zhong Lin Wang, Xiaochun Wang, Taiwen Yong, Weiguo Liu, Jiang Liu, Junbo Du, Kai Shu, Wenyu Yang
Software Mentions: 2
Published: over 8 years ago

10.1186/s12863-020-00853-3

Sex determination in the GIFT strain of tilapia is controlled by a locus in linkage group 23
Cited by: 25
Author(s): Khanam Taslima, Stefanie Wehner, John B. Taggart, Hugues de Verdal, John A. H. Benzie, Michaël Bekaert, Brendan McAndrew, David J. Penman
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.9626

Transcriptomic and proteomic analysis of mouse radiation-induced acute myeloid leukaemia (AML)
Cited by: 6
Author(s): Christophe Badie, Agnieszka Blachowicz, Žarko Barjaktarović, Rosemary Finnon, Arlette Michaux, Hakan Sarioglu, Natalie Brown, Grainne Manning, Mohammed Abderrafi Benotmane, Soile Tapio, Joanna Polańska, Simon Bouffler
Software Mentions: 2
Published: about 10 years ago

10.3389/fpsyt.2020.512761

Review of the Neural Processes of Working Memory Training: Controlling the Impulse to Throw the Baby Out With the Bathwater
Cited by: 13
Author(s): Samantha Brooks, Rhiannon Mackenzie-Phelan, Jamie L. Tully, Helgi B. Schiöth
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12876-018-0927-3

Helicobacter pylori infections in Ethiopia; prevalence and associated factors: a systematic review and meta-analysis
Cited by: 30
Author(s): Addisu Melese, Chalachew Genet, Balew Zeleke, Tesfaye Andualem
Software Mentions: 2
Published: over 7 years ago

10.3389/fpsyg.2019.00411

Agency and Bandura’s Model of Triadic Reciprocal Causation: An Exploratory Mobility Study Among Metrorail Commuters in the Western Cape, South Africa
Cited by: 14
Author(s): Zinette Bergman, Manfred Max Bergman, Andrew Thatcher
Software Mentions: 2
Published: over 7 years ago

10.3389/fpsyg.2018.01311

A Growth-Curve Analysis of the Effects of Future-Thought Priming on Insight and Analytical Problem-Solving
Cited by: 4
Author(s): Truelove-Hill Monica, Brian Erickson, Julia Anderson, Mary Kossoyan, John Kounios
Software Mentions: 2
Published: about 8 years ago

10.3389/fpsyg.2017.01748

EEG Differentiation Analysis and Stimulus Set Meaningfulness
Cited by: 14
Author(s): Armand Mensen, William Marshall, Giulio Tononi
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12862-016-0733-x

Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment
Cited by: 61
Author(s): Tobias Großkopf, Jessika Consuegra, Joël Gaffé, John C. Willison, Richard E. Lenski, Orkun S. Soyer, Dominique Schneider
Software Mentions: 2
Published: almost 10 years ago

10.3389/fsurg.2021.628848

Efficacy of Prehabilitation Including Exercise on Postoperative Outcomes Following Abdominal Cancer Surgery: A Systematic Review and Meta-Analysis
Cited by: 70
Author(s): Jamie L Waterland, Orla McCourt, Lara Edbrooke, Catherine L Granger, Hilmy Ismail, Bernhard Riedel, Linda Denehy
Software Mentions: 2
Published: over 5 years ago

10.3390/genes10030194

Halobacterium salinarum virus ChaoS9, a Novel Halovirus Related to PhiH1 and PhiCh1
Cited by: 11
Author(s): Mike Dyall‐Smith, Peter Palm, Gerhard Wanner, Angela Witte, Dieter Oesterhelt, Friedhelm Pfeiffer
Software Mentions: 2
Published: over 7 years ago

10.3390/genes11010106

Hormonal and Molecular Regulation of Phallus Differentiation in a Marsupial Tammar Wallaby
Cited by: 0
Author(s): Yu Chen, Marilyn B. Renfree
Software Mentions: 2
Published: over 6 years ago

10.3390/genes11040412

Transcriptomic Prediction of Pig Liver-Enriched Gene 1 Functions in a Liver Cell Line
Cited by: 0
Author(s): Zhe Zhang, Zizengchen Wang, Yanna Dang, Jinyang Wang, Sakthidasan Jayaprakash, Huanan Wang, Jin He
Software Mentions: 2
Published: over 6 years ago

10.3390/genes11080883

Exploring the lncRNAs Related to Skeletal Muscle Fiber Types and Meat Quality Traits in Pigs
Cited by: 25
Author(s): Rongyang Li, Bojiang Li, Aiwen Jiang, Yan Cao, Liming Hou, Zengkai Zhang, Xiying Zhang, Kee‐Hong Kim, Wangjun Wu
Software Mentions: 2
Published: about 6 years ago

10.3390/genes12091303

Yeast as a Tool to Understand the Significance of Human Disease-Associated Gene Variants
Cited by: 10
Author(s): Tiziana Cervelli, Alvaro Galli
Software Mentions: 2
Published: almost 5 years ago

10.1155/2021/5511507

The Identification of Childhood Asthma Progression-Related lncRNAs and mRNAs Suitable as Biomarkers Using Weighted Gene Coexpression Network Analysis
Cited by: 4
Author(s): Min Hao, Jinling Zan
Software Mentions: 2
Published: about 5 years ago

10.1186/s12885-020-6676-z

Identification of potential novel biomarkers to differentiate malignant thyroid nodules with cytological indeterminate
Cited by: 9
Author(s): Dandan Wu, Shudong Hu, Yongzhong Hou, Yingying He, Shubai Liu
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.18978

EB1 protein alteration characterizes sporadic but not ulcerative colitis associated colorectal cancer
Cited by: 6
Author(s): Timo Gemoll, Sophie L. Kollbeck, Karl Karstens, Gia G. Hò, Sonja Hartwig, Sarah Strohkamp, Katharina Schillo, Christoph Thorns, Martina Oberländer, Kathrin Kalies, Stefan Lehr, Jens K. Habermann
Software Mentions: 2
Published: about 9 years ago

10.18632/oncotarget.20537

Identification of candidate genes related to pancreatic cancer based on analysis of gene co-expression and protein-protein interaction network
Cited by: 10
Author(s): Tiejun Zhang, Xiaojuan Wang, Z.Q. Yue
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12915-021-01118-w

An increase of phosphatidylcholines in follicular fluid implies attenuation of embryo quality on day 3 post-fertilization
Cited by: 6
Author(s): Ju Wang, Wei Zheng, Shuoping Zhang, Kunlun Yan, Miao Jin, Huiling Hu, Zhen Ma, Fei Gong, Guangxiu Lu, Yan Ren, Liang Lin, Ge Lin, Liang Hu, Siqi Liu
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13059-021-02291-5

MEDALT: single-cell copy number lineage tracing enabling gene discovery
Cited by: 14
Author(s): Fang Wang, Qihan Wang, Vakul Mohanty, Shaoheng Liang, Jun Dou, Jiaying Han, Darlan Conterno Minussi, Ruli Gao, Ding Li, Nicholas E. Navin, Ken Chen
Software Mentions: 2
Published: over 5 years ago

10.1080/17453670902807474

Notes on the use and interpretation of radiostereometric analysis
Cited by: 56
Author(s): Brian Derbyshire, R. J. Prescott, Martyn Porter
Software Mentions: 2
Published: over 17 years ago

10.1186/gm519

miR-638 regulates gene expression networks associated with emphysematous lung destruction
Cited by: 63
Author(s): Stephanie A. Christenson, Corry‐Anke Brandsma, Joshua D. Campbell, Darryl A. Knight, Dmitri V. Pechkovsky, James C. Hogg, Wim Timens, Dirkje S. Postma, Marc E. Lenburg, Avrum Spira
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2105-7-81

Transcriptomic response to differentiation induction
Cited by: 1
Author(s): Geoffrey W. Patton, Robert M. Stephens, Igor A. Sidorov, Xiao Xue, Richard A. Lempicki, D.S. Dimitrov, Robert H. Shoemaker, Gabriela Tudor
Software Mentions: 2
Published: over 20 years ago

10.1186/1471-2105-11-176

Gene set enrichment meta-learning analysis: next- generation sequencing versus microarrays
Cited by: 17
Author(s): Gregor Štiglic, Mateja Bajgot, Peter Kokol
Software Mentions: 2
Published: over 16 years ago

10.1186/1471-2105-15-77

Predicting HIV-1 broadly neutralizing antibody epitope networks using neutralization titers and a novel computational method
Cited by: 11
Author(s): Mark C. Evans, Pham Phung, Agnès Paquet, Anvi Parikh, Christos J. Petropoulos, Terri Wrin, Mojgan Haddad
Software Mentions: 2
Published: over 12 years ago

10.1093/gigascience/giy136

Lilikoi: an R package for personalized pathway-based classification modeling using metabolomics data
Cited by: 25
Author(s): Fadhl Alakwaa, Breck Yunits, Sijia Huang, Hassam Alhajaji, Lana X. Garmire
Software Mentions: 2
Published: over 7 years ago

10.1093/gigascience/giy163

A critical comparison of technologies for a plant genome sequencing project
Cited by: 39
Author(s): Pirita Paajanen, George Kettleborough, Elena López‐Girona, Michael Giolai, Darren Heavens, David Baker, Ashleigh Lister, Fiorella Cugliandolo, Gail Wilde, Ingo Hein, Iain C. Macaulay, Glenn J. Bryan, Matt Clark
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.21546

Identification of hub genes related to silicone-induced immune response in rats
Cited by: 5
Author(s): Xiaolu Huang, Yiwen Zhou, Wenhui Liu, Haizhou Li, Xiao Liang, Rui Jin, Hengyu Du, Jianjun He, Bangda Chai, Ran Duan, Qingfeng Li
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12859-016-0948-2

Structure-based Markov random field model for representing evolutionary constraints on functional sites
Cited by: 6
Author(s): Chanseok Jeong, Dongsup Kim
Software Mentions: 2
Published: over 10 years ago

10.1002/hsr2.202

A prognostic risk model based on immune‐related genes predicts overall survival of patients with hepatocellular carcinoma
Cited by: 2
Author(s): Banglun Pan, Lin Liu, Wei Li
Software Mentions: 2
Published: almost 6 years ago

10.18632/oncotarget.22009

The WAVE3-YB1 interaction regulates cancer stem cells activity in breast cancer
Cited by: 21
Author(s): Kamila Błędzka, Barbara J. Schiemann, William P. Schiemann, Paul L. Fox, Edward F. Plow, Khalid Sossey‐Alaoui
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.22402

NMR-based metabolomic techniques identify potential urinary biomarkers for early colorectal cancer detection
Cited by: 41
Author(s): Zhening Wang, Yan Lin, Jiahao Liang, Yao Huang, Changchun Ma, Xingmu Liu, Ju-Rong Yang
Software Mentions: 2
Published: almost 9 years ago

10.1186/s41065-020-00127-z

Investigation of the gene co-expression network and hub genes associated with acute mountain sickness
Cited by: 3
Author(s): Yue Cune Chang, Jiange He, Jiqiang Tang, Kai Chen, Zhenguo Wang, Qun Xia, Hai Li
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-10-34

Sparse canonical methods for biological data integration: application to a cross-platform study
Cited by: 223
Author(s): Kim Anh Lê Cao, Pascal G.P. Martin, Christèle Robert-Granié, Philippe Besse
Software Mentions: 2
Published: over 17 years ago

10.18632/oncotarget.23254

Long non-coding RNA GAS5 and ZFAS1 are prognostic markers involved in translation targeted by miR-940 in prostate cancer
Cited by: 30
Author(s): Xin Chen, Chao Yang, Shengli Xie, Edwin Cheung
Software Mentions: 2
Published: over 8 years ago

10.1038/s41438-021-00537-8

Comparative transcriptomic analysis highlights contrasting levels of resistance of Vitis vinifera and Vitis amurensis to Botrytis cinerea
Cited by: 10
Author(s): Ran Wan, Chunfang Guo, Xiaoqing Hou, Yanxun Zhu, Min Gao, Xiaoyan Hu, Songlin Zhang, Chen Jiao, Rongrong Guo, Zhi Li, Xiping Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/1748-5908-3-49

The intellectual structure and substance of the knowledge utilization field: A longitudinal author co-citation analysis, 1945 to 2004
Cited by: 119
Author(s): Carole A. Estabrooks, Linda Derksen, Connie Winther, John N. Lavis, Shannon D. Scott, Lars Wallin, Joanne Profetto‐McGrath
Software Mentions: 2
Published: almost 18 years ago

10.1002/jbm4.10195

Body Weight and Body Mass Index Influence Bone Mineral Density in Late Adolescence in a Two‐Year Follow‐Up Study. The Tromsø Study: Fit Futures
Cited by: 2
Author(s): Ole Andreas Nilsen, Luai A. Ahmed, Anne Winther, Tore Christoffersen, Gyrd Thrane, Elin Kristin Evensen, Anne‐Sofie Furberg, Guri Grimnes, Elaine Dennison, Nina Emaus
Software Mentions: 2
Published: almost 7 years ago

10.1172/jci.insight.137926

Human Tregs at the materno-fetal interface show site-specific adaptation reminiscent of tumor Tregs
Cited by: 19
Author(s): Judith Wienke, Laura Brouwers, Leone M. van der Burg, Michal Mokrý, Rianne C. Scholman, Floris Groenendaal, Bas B. van Rijn, Femke van Wijk
Software Mentions: 2
Published: almost 6 years ago

10.1111/1365-2656.12630

Analysing animal social network dynamics: the potential of stochastic actor-oriented models
Cited by: 39
Author(s): David N. Fisher, Amiyaal Ilany, Matthew J. Silk, Tom Tregenza
Software Mentions: 2
Published: over 9 years ago

10.4172/1948-593X.1000120

Systemic Transcriptional Alterations of Innate and Adaptive Immune Signaling Pathways in Atherosclerosis, Ischemia Stroke, and Myocardial Infarction
Cited by: 11
Author(s): Taura L. Barr, Reynal L VanGilder, Ryan Seiberg, Ashely Petrone, Paul D. Chantler, Chiang-Ching Huang
Software Mentions: 2
Published: over 11 years ago

10.1074/jbc.RA118.003280

A dynamic transcriptomic atlas of cytokine-induced killer cells
Cited by: 7
Author(s): Mingyao Meng, Lin Li, Ruhong Li, Wenju Wang, Yang Chen, Youhua Xie, Rui Han, Kai Zhu, Wenwen Huang, Lili Yang, Shuo Li, Jianlin Shi, Wenyong Tan, Hui Gao, Yiyi Zhao, Yang Li, Tan Jinquan, Zongliu Hou
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.24047

Molecular characterization of breast cancer cell response to metabolic drugs
Cited by: 22
Author(s): Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, Jorge M. Arevalillo, Mariana Díaz-Almirón, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Hilario Navarro, Rosa Aras-López, Irene Dapía, Rocío López-Vacas, Paolo Nanni, Sara Llorente-Armijo, Pedro Arias, Alberto M. Borobia, Paloma Maı́n, Jaime Feliú, Enrique Espinosa, Juan Ángel Fresno Vara
Software Mentions: 2
Published: over 8 years ago

10.1186/1423-0127-17-S1-S38

A maternal low protein diet has pronounced effects on mitochondrial gene expression in offspring liver and skeletal muscle; protective effect of taurine
Cited by: 40
Author(s): Ole Hartvig Mortensen, Hanne Olsen, Lis Frandsen, Peter E. Nielsen, Finn Cilius Nielsen, Niels Grunnet, Bjørn Quistorff
Software Mentions: 2
Published: over 16 years ago

10.1186/s12929-021-00751-5

AUY922 induces retinal toxicity through attenuating TRPM1
Cited by: 6
Author(s): Che-Hung Shen, Chi-Hsun Hsieh, Kuan-Ying Jiang, Chih‐Yu Lin, Nai‐Jung Chiang, Tingwei Li, Chen‐Tung Yen, Wan-Ju Chen, Daw-Yang Hwang, Li-Tzong Chen
Software Mentions: 2
Published: about 5 years ago

10.1007/s10858-015-9908-9

Development of a method for reconstruction of crowded NMR spectra from undersampled time-domain data
Cited by: 3
Author(s): Takumi Ueda, Chie Yoshiura, Masahiko Matsumoto, Yutaka Kofuku, Junya Okude, Kazunori Kondo, Yutaro Shiraishi, Koh Takeuchi, Ichio Shimada
Software Mentions: 2
Published: over 11 years ago

10.1186/s12859-015-0527-y

Cell-composition effects in the analysis of DNA methylation array data: a mathematical perspective
Cited by: 88
Author(s): E. Andrés Houseman, Karl T. Kelsey, John K. Wiencke, Carmen J. Marsit
Software Mentions: 2
Published: over 11 years ago

10.7150/jca.47918

New novel non-MHC genes were identified for cervical cancer with an integrative analysis approach of transcriptome-wide association study
Cited by: 6
Author(s): Haimiao Chen, Ting Wang, Shuiping Huang, Ping Zeng
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-14-194

bioNerDS: exploring bioinformatics’ database and software use through literature mining
Cited by: 26
Author(s): Geraint Duck, Goran Nenadić, Andy Brass, David L. Robertson, Robert Stevens
Software Mentions: 2
Published: about 13 years ago

10.1002/cjp2.191

Overactivation of the <scp>IGF</scp> signalling pathway in osteosarcoma: a potential therapeutic target?
Cited by: 5
Author(s): Baptiste Ameline, Michal Kováč, Michaela Nathrath, Maxim Barenboim, Olaf Witt, Andreas H. Krieg, Daniel Baumhoer
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.14856

STAT1 and its related molecules as potential biomarkers in Mycobacterium tuberculosis infection
Cited by: 41
Author(s): Xing‐hao Yi, Bo Zhang, Yurong Fu, Zhengjun Yi
Software Mentions: 2
Published: over 6 years ago

10.3390/jpm10040282

Digital Phenotyping and Patient-Generated Health Data for Outcome Measurement in Surgical Care: A Scoping Review
Cited by: 16
Author(s): Prakash Jayakumar, Eugenia Lin, Vincent P Galea, Abraham J Mathew, Nikhil Panda, Imelda Vetter, Alex B. Haynes
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.15357

CMap analysis identifies Atractyloside as a potential drug candidate for type 2 diabetes based on integration of metabolomics and transcriptomics
Cited by: 9
Author(s): Hailong Li, Xiaodong Shi, Hua Jiang, Junren Kang, Miao Yu, Qifei Li, Kang Yu, Zhengju Chen, Hui Pan, Wei Chen
Software Mentions: 2
Published: about 6 years ago

10.1111/jcmm.15560

LncRNA‐mRNA expression profiles and functional networks in osteoclast differentiation
Cited by: 16
Author(s): Wenjie Liu, Zhaofeng Li, Zhaopeng Cai, Zhongyu Xie, Jinteng Li, Ming Li, Shuizhong Cen, Simin Tang, Guoyan Zheng, Guiwen Ye, Huilan Su, Shan Wang, Peng Wang, Huiyong Shen, Yanfeng Wu
Software Mentions: 2
Published: about 6 years ago

10.1186/s13075-017-1224-1

Blood chemokine profile in untreated early rheumatoid arthritis: CXCL10 as a disease activity marker
Cited by: 53
Author(s): Jayesh M. Pandya, Anna‐Carin Lundell, Kerstin Andersson, Inger Nordström, Elke Theander, Anna Rudin
Software Mentions: 2
Published: over 9 years ago

10.1111/jcmm.15867

Mutations in the notch signalling pathway are associated with enhanced anti‐tumour immunity in colorectal cancer
Cited by: 14
Author(s): Fei Wang, Jie Long, Liang Li, Zhibin Zhao, Wei Fang, Yuan Yao, Wei Qiu, Zixin Wu, Qingqing Luo, Wei Liu, Yibo Quan, Zhe‐Xiong Lian, Jie Cao
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13075-019-1874-2

Iguratimod represses B cell terminal differentiation linked with the inhibition of PKC/EGR1 axis
Cited by: 29
Author(s): Ye Yan, Mei Liu, Liang Tang, Fukuan Du, Yuanhua Liu, Pei Hao, Qiong Fu, Qiang Guo, Qingran Yan, Xiaoming Zhang, Chunde Bao
Software Mentions: 2
Published: over 7 years ago

10.1186/ar4278

Transcriptomic signatures in cartilage ageing
Cited by: 58
Author(s): Mandy J. Peffers, Xuan Li, Peter Clegg
Software Mentions: 2
Published: over 13 years ago

10.1007/s00204-016-1824-6

Information-dependent enrichment analysis reveals time-dependent transcriptional regulation of the estrogen pathway of toxicity
Cited by: 20
Author(s): Salil N. Pendse, Alexandra Maertens, Michael Rosenberg, Dipanwita Roy, Rick A. Fasani, Marguerite M. Vantangoli, Samantha J. Madnick, Kim Boekelheide, Albert J. Fornace, Shelly Odwin, James D. Yager, Thomas Hartung, Melvin E. Andersen, Patrick D. McMullen
Software Mentions: 2
Published: almost 10 years ago

10.3390/antiox10060949

The Long-Term DEHP Exposure Confers Multidrug Resistance of Triple-Negative Breast Cancer Cells through ABC Transporters and Intracellular ROS
Cited by: 13
Author(s): Mahendra Jadhao, Eing‐Mei Tsai, Ho-Chun Yang, Yih-Fung Chen, Shih‐Shin Liang, Tsu‐Nai Wang, Yen-Ni Teng, Hurng‐Wern Huang, Lifang Wang, Chien‐Chih Chiu
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-018-37489-4

Metabolism as an early predictor of DPSCs aging
Cited by: 26
Author(s): Dannie Macrin, Ammar Alghadeer, Yan Ting Zhao, Jason W. Miklas, Abdiasis M. Hussein, Damien Detraux, Aaron M. Robitaille, Anup Madan, Randall T. Moon, Yuliang Wang, Arikketh Devi, Julie Mathieu, Hannele Ruohola‐Baker
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-38989-7

Long Non-coding RNAs Coordinate Developmental Transitions and Other Key Biological Processes in Grapevine
Cited by: 29
Author(s): Garima Bhatia, Shailesh Sharma, Santosh Kumar Upadhyay, Kashmir Singh
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-48059-7

Alterations in lipid metabolism of spinal cord linked to amyotrophic lateral sclerosis
Cited by: 84
Author(s): Adriano B. Chaves‐Filho, Isabella Fernanda Dantas Pinto, Lucas S. Dantas, André Machado Xavier, Alex Inague, Rodrigo L. Faria, Marisa Helena Gennari de Medeiros, Isaías Glezer, Marcos Yukio Yoshinaga, Sayuri Miyamoto
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-51525-x

Hematopoietic Npc1 mutation shifts gut microbiota composition in Ldlr−/− mice on a high-fat, high-cholesterol diet
Cited by: 3
Author(s): Tom Houben, John Penders, Yvonne Oligschlaeger, Inês Magro dos Reis, Marc Jan Bonder, Debby P. Y. Koonen, Jingyuan Fu, Marten H. Hofker, Ronit Shiri-Sverdlov
Software Mentions: 2
Published: almost 7 years ago

10.4103/0975-7406.76463

Differential scanning calorimetry: An invaluable tool for a detailed thermodynamic characterization of macromolecules and their interactions
Cited by: 278
Author(s): Michael Chiu, Elmar J. Prenner
Software Mentions: 2
Published: over 15 years ago

10.1038/s41598-019-55983-1

N-Octanoyl-Dopamine inhibits cytokine production in activated T-cells and diminishes MHC-class-II expression as well as adhesion molecules in IFNγ-stimulated endothelial cells
Cited by: 2
Author(s): Björn B. Hofmann, Nicolas Krapp, Yingchun Li, Carolina De La Torre, Marloes Sol, Jana D. Braun, M Kolibabka, Prama Pallavi, Bernhard K. Krämer, Benito A. Yard, Anna-Isabelle Kälsch
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-58923-6

The Golgi Glycoprotein MGAT4D is an Intrinsic Protector of Testicular Germ Cells From Mild Heat Stress
Cited by: 8
Author(s): Ayodélé Akintayo, Meng Liang, Boris Bartholdy, Frank Batista, Jennifer Aguilan, Jillian Prendergast, Afsana Sabrin, Subha Sundaram, Pamela Stanley
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-59412-6

Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth
Cited by: 6
Author(s): Yvonne Mullins, Kate Keogh, David A. Kenny, A. K. Kelly, Padraig O’ Boyle, Sinéad M. Waters
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-73654-4

Extensive fragmentation and re-organization of transcription in Systemic Lupus Erythematosus
Cited by: 8
Author(s): Vasilis F. Ntasis, Nikolaos Panousis, Maria G Tektonidou, Emmanouil T. Dermitzakis, Dimitrios T. Boumpas, George Βertsias, Christoforos Nikolaou
Software Mentions: 2
Published: almost 6 years ago

10.1262/jrd.2018-136

Glycerol kinase 2 is essential for proper arrangement of crescent-like mitochondria to form the mitochondrial sheath during mouse spermatogenesis
Cited by: 27
Author(s): Keisuke Shimada, Hirotaka Kato, Haruhiko Miyata, Masahito Ikawa
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-80945-3

Weighted gene co-expression network analysis of the salt-responsive transcriptomes reveals novel hub genes in green halophytic microalgae Dunaliella salina
Cited by: 26
Author(s): Bahman Panahi, Mohammad Amin Hejazi
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-81040-x

Nerve Growth Factor (NGF) modulates in vitro induced myofibroblasts by highlighting a differential protein signature
Cited by: 3
Author(s): Graziana Esposito, Bijorn Omar Balzamino, Egidio Stigliano, Filippo Biamonte, Andrea Urbani, Alessandra Micera
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82692-5

Complete chloroplast genomes shed light on phylogenetic relationships, divergence time, and biogeography of Allioideae (Amaryllidaceae)
Cited by: 16
Author(s): Ju Namgung, Hoang Dang Khoa, Changkyun Kim, Hyeok Jae Choi, Joo‐Hwan Kim
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82707-1

Effects of maoto (ma-huang-tang) on host lipid mediator and transcriptome signature in influenza virus infection
Cited by: 4
Author(s): Akinori Nishi, Noriko Kaifuchi, Chika Shimobori, Katsuya Ohbuchi, Seiichi Iizuka, Aiko Sugiyama, Keisuke Ogura, Masahiro Yamamoto, Haruo Kuroki, Shigeki Nabeshima, Ayako Yachie‐Kinoshita, Yoshikazu Matsuoka, Hiroaki Kitano
Software Mentions: 2
Published: over 5 years ago

10.3390/nu10091255

Lactobacillus acidophilus DDS-1 Modulates the Gut Microbiota and Improves Metabolic Profiles in Aging Mice
Cited by: 57
Author(s): Ravichandra Vemuri, Rajaraman Eri, Rohit Gundamaraju, Shakuntla Gondalia, Avinash V. Karpe, David J. Beale, Christopher Martoni, Rajaraman Eri
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-021-89252-x

Effect of plane of nutrition in early life on the transcriptome of visceral adipose tissue in Angus heifer calves
Cited by: 8
Author(s): Kate Keogh, A. K. Kelly, David A. Kenny
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-94564-z

Interpretable deep recommender system model for prediction of kinase inhibitor efficacy across cancer cell lines
Cited by: 6
Author(s): Krzysztof Koras, Ewa Kizling, Dilafruz Juraeva, Eike Staub, Ewa Szczurek
Software Mentions: 2
Published: about 5 years ago

10.1186/s12967-020-02630-3

A machine learning-based clinical tool for diagnosing myopathy using multi-cohort microarray expression profiles
Cited by: 6
Author(s): Andrew Tran, Chris J. Walsh, Jane Batt, Claudia C. dos Santos, Pingzhao Hu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-97371-8

Compromised anti-tumor–immune features of myeloid cell components in chronic myeloid leukemia patients
Cited by: 1
Author(s): Ibuki Harada, Haruka Sasaki, Koichi Murakami, Akira Nishiyama, Jun Nakabayashi, Motohide Ichino, Tatsuya Miyazaki, Ken Kumagai, Kenji Matsumoto, Maki Hagihara, Wataru Kawase, Takayoshi Tachibana, Masatsugu Tanaka, T. Saito, Heiwa Kanamori, Hiroyuki Fujita, Shin Fujisawa, Hitoshi Nakajima, Tomohide Tamura
Software Mentions: 2
Published: almost 5 years ago

10.1100/2012/842727

Biomarker Identification for Prostate Cancer and Lymph Node Metastasis from Microarray Data and Protein Interaction Network Using Gene Prioritization Method
Cited by: 14
Author(s): Carlos Roberto Arias, Hsiang‐Yuan Yeh, Von-Wun Soo
Software Mentions: 2
Published: over 14 years ago

10.1155/2014/252489

The Influences of Canopy Species and Topographic Variables on Understory Species Diversity and Composition in Coniferous Forests
Cited by: 18
Author(s): Huasheng Hong, Qi Feng, Yufang Su
Software Mentions: 2
Published: over 12 years ago

10.1155/2015/734984

A Novel Ontology Approach to Support Design for Reliability considering Environmental Effects
Cited by: 1
Author(s): Bo Sun, Yu Liu, Tianyuan Ye, Yi Ren
Software Mentions: 2
Published: over 11 years ago

10.3390/s141222643

Tree Crown Mapping in Managed Woodlands (Parklands) of Semi-Arid West Africa Using WorldView-2 Imagery and Geographic Object Based Image Analysis
Cited by: 43
Author(s): Martin Karlson, Heather Reese, Madelene Ostwald
Software Mentions: 2
Published: over 11 years ago

10.1042/BSR20204359

Identified a disintegrin and metalloproteinase with thrombospondin motifs 6 serve as a novel gastric cancer prognostic biomarker by bioinformatics analysis
Cited by: 4
Author(s): Yazhen Zhu, Yi Liu, Xiwen Liao, Shuang Luo
Software Mentions: 2
Published: over 5 years ago

10.1038/s41408-020-00344-9

In vitro and ex vivo gene expression profiling reveals differential kinetic response of HSPs and UPR genes is associated with PI resistance in multiple myeloma
Cited by: 9
Author(s): Amit Mitra, Harish Kumar, Vijay Ramakrishnan, Li Chen, Linda B. Baughn, Santosh Kumar, S. Vincent Rajkumar, Brian G. Van Ness
Software Mentions: 2
Published: about 6 years ago

10.1038/s41413-019-0055-x

Extra-skeletal manifestations in mice affected by Clcn7-dependent autosomal dominant osteopetrosis type 2 clinical and therapeutic implications
Cited by: 12
Author(s): Antonio Maurizi, Mattia Capulli, A Curle, Rajvi Patel, Argia Ucci, JA Cortes, H Oxford, Shireen R. Lamandé, J Bateman, Nadia Rucci, Anna Teti
Software Mentions: 2
Published: about 7 years ago

10.1038/s41413-020-00120-2

MEF2C regulates osteoclastogenesis and pathologic bone resorption via c-FOS
Cited by: 25
Author(s): Takayuki Fujii, Koichi Murata, Se-Hwan Mun, Seyeon Bae, Ye Ji Lee, Tannia Pannellini, Ki‐Woon Kang, David J. Oliver, Kyung‐Hyun Park‐Min, Lionel B. Ivashkiv
Software Mentions: 2
Published: over 5 years ago

Projects: pypi: analysis

Science Score: 90/100

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Papers Mentioning analysis 2,036