pypi: analysis | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0157893

Draft Genomes of Anopheles cracens and Anopheles maculatus: Comparison of Simian Malaria and Human Malaria Vectors in Peninsular Malaysia
Cited by: 7
Author(s): Yee Ling Lau, Wenn-Chyau Lee, Junhui Chen, Zhisheng Zhong, Jianbo Jian, Amirah Amir, Fei Wen Cheong, Jia-Siang Sum, Mun-Yik Fong
Software Mentions: 2
Published: over 10 years ago

10.1002/emmm.201302558

Triple negative breast cancer initiating cell subsets differ in functional and molecular characteristics and in γ‐secretase inhibitor drug responses
Cited by: 58
Author(s): Diana J. Azzam, Dekuang Zhao, Junjun Sun, Andy J. Minn, Prathibha Ranganathan, Katherine Drews-Elger, Xiaoqing Han, Manuel Picón-Ruiz, Candace A. Gilbert, Seth A. Wander, Anthony J. Capobianco, Dorraya El-Ashry, Joyce M. Slingerland
Software Mentions: 2
Published: about 13 years ago

10.1080/17453670902807474

Notes on the use and interpretation of radiostereometric analysis
Cited by: 56
Author(s): Brian Derbyshire, R. J. Prescott, Martyn Porter
Software Mentions: 2
Published: almost 18 years ago

10.1186/s12936-021-03759-2

The application of drones for mosquito larval habitat identification in rural environments: a practical approach for malaria control?
Cited by: 28
Author(s): Michelle C. Stanton, Patrick Kalonde, Kennedy Zembere, Remy Hoek Spaans, Christopher M. Jones
Software Mentions: 2
Published: over 5 years ago

10.3390/nu10091255

Lactobacillus acidophilus DDS-1 Modulates the Gut Microbiota and Improves Metabolic Profiles in Aging Mice
Cited by: 57
Author(s): Ravichandra Vemuri, Rajaraman Eri, Rohit Gundamaraju, Shakuntla Gondalia, Avinash V. Karpe, David J. Beale, Christopher Martoni, Rajaraman Eri
Software Mentions: 2
Published: about 8 years ago

10.3390/nu12103140

Statistical and Machine-Learning Analyses in Nutritional Genomics Studies
Cited by: 14
Author(s): Leila Khorraminezhad, Mickaël Leclercq, Arnaud Droit, Jean‐François Bilodeau, Iwona Rudkowska
Software Mentions: 2
Published: about 6 years ago

10.1186/1471-2164-15-741

Transcriptomic complexity in young maize primary roots in response to low water potentials
Cited by: 68
Author(s): Nina Opitz, Anja Paschold, Caroline Marcon, Waqas Ahmed Malik, Christa Lanz, Hans‐Peter Piepho, Frank Hochholdinger
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2014.00406

Spatial patterns and links between microbial community composition and function in cyanobacterial mats
Cited by: 15
Author(s): Mohammad A. A. Al-Najjar, Alban Ramette, Michael Kühl, Waleed Hamza, Judith M. Klatt, Lùbos Polerecký
Software Mentions: 2
Published: about 12 years ago

10.3390/nu13061788

Hepatic Nfe2l2 Is Not an Essential Mediator of the Metabolic Phenotype Produced by Dietary Methionine Restriction
Cited by: 4
Author(s): Fei Han, Kirsten P. Stone, Sujoy Ghosh, Laura A. Forney, Landon C. Sims, Leighann Y Vincik, Thomas W. Gettys
Software Mentions: 2
Published: over 5 years ago

10.3390/biom11040579

Chemoinformatics Studies on a Series of Imidazoles as Cruzain Inhibitors
Cited by: 5
Author(s): Alex R. Medeiros, Leonardo L. G. Ferreira, Márcia Regina de Souza, Celso de Oliveira Rezende, Rocio Marisol Espinoza Chávez, Luiz C. Dias, Adriano D. Andricopulo
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.577497

An Educational Bioinformatics Project to Improve Genome Annotation
Cited by: 5
Author(s): Zoie Amatore, Susan C. Gunn, Laura Harris
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12909-016-0676-3

A latent trait approach to measuring HIV/AIDS related stigma in healthcare professionals: application of mokken scaling technique
Cited by: 5
Author(s): Keivan Ahmadi, Daniel D. Reidpath, Pascale Allotey, Mohamed Azmi Hassali
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2019.00440

Comparative Metabonomic Investigations of Schistosoma japonicum From SCID Mice and BALB/c Mice: Clues to Developmental Abnormality of Schistosome in the Immunodeficient Host
Cited by: 12
Author(s): Rong Liu, Wenjun Cheng, Hongliang Tang, Qian Zhong, Zhenping Ming, Hui-Fen Dong
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.661798

Global Expansion of Linezolid-Resistant Coagulase-Negative Staphylococci
Cited by: 8
Author(s): Vladimir Gostev, Semen A. Leyn, Alexander Kruglov, Daria Likholetova, Olga Kalinogorskaya, Marina Baykina, Н. В. Дмитриева, Z. V. Grigorievskaya, Tatiana V. Priputnevich, L A Lyubasovskaya, Alexey B. Gordeev, С В Сидоренко
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-019-5722-1

Genetic mechanism underlying sexual plasticity and its association with colour patterning in zebrafish (Danio rerio)
Cited by: 14
Author(s): Shahrbanou Hosseini, Ngoc-Thuy Ha, Henner Simianer, Clemens Falker‐Gieske, Bertram Brenig, André Franke, Gabriele Hörstgen‐Schwark, Jens Tetens, Sebastian Herzog, Ahmad Sharifi
Software Mentions: 2
Published: over 7 years ago

10.1186/s12913-016-1500-9

Implementation of Child Death Review in the Netherlands: results of a pilot study
Cited by: 4
Author(s): Sandra Gijzen, Michaëla I. Hilhorst, M.P. L’Hoir, Magdalena M. Boere-Boonekamp, Ariana Need
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0020763

A Systems Level, Functional Genomics Analysis of Chronic Epilepsy
Cited by: 63
Author(s): Kellen D. Winden, Stanislav L. Karsten, Anatol Bragin, Lili C. Kudo, Lauren Gehman, Josephine Ruidera, Daniel H. Geschwind, Jerome Engel
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0107559

Gene Expression and Pathway Analysis of Effects of the CMAH Deactivation on Mouse Lung, Kidney and Heart
Cited by: 15
Author(s): Deug-Nam Kwon, Byungsoo Chang, Jin‐Hoi Kim
Software Mentions: 2
Published: about 12 years ago

10.1016/j.coisb.2019.04.002

Footprint-based functional analysis of multiomic data
Cited by: 32
Author(s): Aurélien Dugourd, Julio Sáez-Rodríguez
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.01496

Influenza Virus Segment Composition Influences Viral Stability in the Environment
Cited by: 14
Author(s): Thomas Labadie, Christophe Batéjat, Jean-Claude Manuguerra, India Leclercq
Software Mentions: 2
Published: over 8 years ago

10.1186/s12870-021-02927-5

The mechanism of sesame resistance against Macrophomina phaseolina was revealed via a comparison of transcriptomes of resistant and susceptible sesame genotypes
Cited by: 11
Author(s): Wenqing Yan, Yunxia Ni, Xintao Liu, Hui Zhao, Yanhua Chen, Min Jiang, Mingming Liu, Hongyan Liu, Bin Tian
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-14-436

Deciphering the response of Mycobacterium smegmatis to nitrogen stress using bipartite active modules
Cited by: 15
Author(s): Katrina Williams, William A Bryant, Victoria A Jenkins, Geraint Barton, Adam A. Witney, John W. Pinney, Brian D. Robertson
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0210008

Constraints-based analysis identifies NAD+ recycling through metabolic reprogramming in antibiotic resistant Chromobacterium violaceum
Cited by: 10
Author(s): Deepanwita Banerjee, Anu Raghunathan
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0193271

Placental CpG methylation of infants born extremely preterm predicts cognitive impairment later in life
Cited by: 26
Author(s): Sloane K. Tilley, Elizabeth M. Martin, Lisa Smeester, Robert M. Joseph, Karl Kuban, Timothy Heeren, Olaf Dammann, T. Michael O’Shea, Rebecca C. Fry
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0211502

Switching between reading tasks leads to phase-transitions in reading times in L1 and L2 readers
Cited by: 3
Author(s): Sebastian Wallot, Jun Taek Lee, Damian G. Kelty-Stephen
Software Mentions: 2
Published: over 7 years ago

10.3390/molecules25246003

Structure-Based Discovery and Bioactivity Evaluation of Novel Aurora-A Kinase Inhibitors as Anticancer Agents via Docking-Based Comparative Intermolecular Contacts Analysis (dbCICA)
Cited by: 10
Author(s): Majd S. Hijjawi, Reem Fawaz Abutayeh, Mutasem O. Taha
Software Mentions: 2
Published: almost 6 years ago

10.3390/metabo11080484

The Metabolic Signature of In Vitro Produced Bovine Embryos Helps Predict Pregnancy and Birth after Embryo Transfer
Cited by: 4
Author(s): Isabel Gimeno, Pablo García‐Manrique, S. Carrocera, Cristina López-Hidalgo, Luís Valledor, David Martín-González, E. Gómez
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0064181

Suppression and Activation of the Malignant Phenotype by Extracellular Matrix in Xenograft Models of Bladder Cancer: A Model for Tumor Cell “Dormancy”
Cited by: 15
Author(s): Robert E. Hurst, Paul Hauser, Kimberly D. Kyker, Jonathan E. Heinlen, Jason P. Hodde, Michael C. Hiles, Stanley D. Kosanke, Mikhail G. Dozmorov, Michael A. Ihnat
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0159790

Phylogeography of Libanotis buchtormensis (Umbelliferae) in Disjunct Populations along the Deserts in Northwest China
Cited by: 7
Author(s): Ping Wang, Xianzhi Zhang, Nan Tang, Jianjun Liu, Liang Xu, Kai Wang
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0160574

Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers
Cited by: 15
Author(s): Michelle Davison, Todd J. Treangen, Sergey Koren, Mihai Pop, Devaki Bhaya
Software Mentions: 2
Published: about 10 years ago

10.3390/molecules24061064

Metabolome and Transcriptome Sequencing Analysis Reveals Anthocyanin Metabolism in Pink Flowers of Anthocyanin-Rich Tea (Camellia sinensis)
Cited by: 49
Author(s): Dylan O’Neill Rothenberg, Haijun Yang, Meiban Chen, Wenting Zhang, Lingyun Zhang
Software Mentions: 2
Published: over 7 years ago

10.1186/ar4278

Transcriptomic signatures in cartilage ageing
Cited by: 58
Author(s): Mandy J. Peffers, Xuan Li, Peter Clegg
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0164627

Comparing Eye Tracking with Electrooculography for Measuring Individual Sentence Comprehension Duration
Cited by: 13
Author(s): Jana Müller, Dorothea Wendt, Birger Kollmeier, Thomas Brand
Software Mentions: 2
Published: almost 10 years ago

10.1042/BSR20204359

Identified a disintegrin and metalloproteinase with thrombospondin motifs 6 serve as a novel gastric cancer prognostic biomarker by bioinformatics analysis
Cited by: 4
Author(s): Yazhen Zhu, Yi Liu, Xiwen Liao, Shuang Luo
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0096841

HaplotypeCN: Copy Number Haplotype Inference with Hidden Markov Model and Localized Haplotype Clustering
Cited by: 3
Author(s): Yen-Jen Lin, Yu-Tin Chen, Shu-Ni Hsu, Chieh Yu Peng, Chuan‐Yi Tang, Tzu‐Chen Yen, Wu‐Chiao Hsieh
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0134014

Flux Balance Analysis with Objective Function Defined by Proteomics Data—Metabolism of Mycobacterium tuberculosis Exposed to Mefloquine
Cited by: 21
Author(s): Daniel Montezano, Laura Meek, Rashmi Gupta, Luiz E. Bermudez, J.C.M. Bermudez
Software Mentions: 2
Published: about 11 years ago

10.3389/fimmu.2017.00557

Predicting RTS,S Vaccine-Mediated Protection from Transcriptomes in a Malaria-Challenge Clinical Trial
Cited by: 49
Author(s): Robert A. van den Berg, Margherita Coccia, W. Ripley Ballou, Kent E. Kester, Christian F. Ockenhouse, Johan Vekemans, Erik Jongert, Arnaud M. Didierlaurent, Robbert G. van der Most
Software Mentions: 2
Published: over 9 years ago

10.1007/s00204-016-1824-6

Information-dependent enrichment analysis reveals time-dependent transcriptional regulation of the estrogen pathway of toxicity
Cited by: 20
Author(s): Salil N. Pendse, Alexandra Maertens, Michael Rosenberg, Dipanwita Roy, Rick A. Fasani, Marguerite M. Vantangoli, Samantha J. Madnick, Kim Boekelheide, Albert J. Fornace, Shelly Odwin, James D. Yager, Thomas Hartung, Melvin E. Andersen, Patrick D. McMullen
Software Mentions: 2
Published: about 10 years ago

10.1186/s12870-021-02932-8

Development of genic KASP SNP markers from RNA-Seq data for map-based cloning and marker-assisted selection in maize
Cited by: 11
Author(s): Zhengjie Chen, Danling Tang, Jixing Ni, Peng Li, Le Wang, Jinhong Zhou, Chenyang Li, Hai Long, Lujiang Li, Jian Liu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-020-02817-2

Auxin is involved in arbuscular mycorrhizal fungi-promoted tomato growth and NADP-malic enzymes expression in continuous cropping substrates
Cited by: 17
Author(s): Yu Wang, Wenze Zhang, Weikang Liu, Golam Jalal Ahammed, Wenxu Wen, Shirong Guo, Sheng Shu, Jian Sun
Software Mentions: 2
Published: over 5 years ago

10.1093/database/bau030

'In silico expression analysis', a novel PathoPlant web tool to identify abiotic and biotic stress conditions associated with specific cis-regulatory sequences
Cited by: 18
Author(s): Julio C. Bolívar, Fabian Machens, Yuri Brill, Artyom Romanov, Lorenz Bülow, Reinhard Hehl
Software Mentions: 2
Published: over 12 years ago

10.3389/fimmu.2019.01087

Systems Immunology Characterization of Novel Vaccine Formulations for Mycoplasma hyopneumoniae Bacterins
Cited by: 28
Author(s): Anneleen Matthijs, Gaël Auray, Virginie Jakob, Obdulio García-Nicolás, Roman Othmar Braun, Irene Keller, Rémy Bruggman, Bert Devriendt, Filip Boyen, Carlos A. Guzmán, Annelies Michiels, Freddy Haesebrouck, Nicolas Collin, Christophe Barnier-Quer, Dominiek Maes, Artur Summerfield
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-019-5495-6

A unique insight into the MiRNA profile during genital chlamydial infection
Cited by: 13
Author(s): Ifeyinwa Benyeogor, Tankya Simoneaux, Yuehao Wu, Stephanie Lundy, Zenas George, Khamia Ryans, Danielle McKeithen, Roshan Pais, Debra Ellerson, W. Walter Lorenz, Tolulope Omosun, Winston E. Thompson, Francis O. Eko, Carolyn M. Black, Uriel Blás-Machado, Joseph U. Igietseme, Qing He, Yusuf Omosun
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2164-10-130

Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae
Cited by: 33
Author(s): William J. Jo, Jeung Hyoun Kim, Eric Oh, Daniel Jaramillo, Patricia S. Holman, Alex Loguinov, Adam P. Arkin, Corey Nislow, Guri Giaever, Chris D. Vulpe
Software Mentions: 2
Published: over 17 years ago

10.3390/molecules23010186

Synthesis, Anti-Proliferative Activity Evaluation and 3D-QSAR Study of Naphthoquinone Derivatives as Potential Anti-Colorectal Cancer Agents
Cited by: 9
Author(s): Julio Acuña, Jhoan Piermattey, Daneiva Caro, Sven Bannwitz, L Barrios, Juan‐Felipe López, Yanet Ocampo, Ricardo Vivas‐Reyes, Fabio Aristizábal, Ricardo Gaitán, Klaus Müller, Luís Franco
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12864-021-07510-8

Gene co-expression network analysis reveals key pathways and hub genes in Chinese cabbage (Brassica rapa L.) during vernalization
Cited by: 18
Author(s): Yun Dai, Xiao Sun, Chenggang Wang, Fĕi Li, Shifan Zhang, Hui Zhang, Guoliang Li, Lingyun Yuan, Guohu Chen, Rifei Sun, Shujiang Zhang
Software Mentions: 2
Published: over 5 years ago

10.1242/dmm.017889

Acute upregulation of hedgehog signaling in mice causes differential effects on cranial morphology
Cited by: 11
Author(s): Nandini Singh, Tara Dutka, Benjamin Devenney, Kazuhiko Kawasaki, Roger H. Reeves, Joan T. Richtsmeier
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12870-020-2322-9

Identification of the regulatory networks and hub genes controlling alfalfa floral pigmentation variation using RNA-sequencing analysis
Cited by: 21
Author(s): Huirong Duan, Lirong Wang, Guangxin Cui, Xingyue Zhou, Xiaorong Duan, Hongshan Yang
Software Mentions: 2
Published: over 6 years ago

10.1186/s12870-019-1933-5

De novo transcriptome sequencing and gene expression profiling of Magnolia wufengensis in response to cold stress
Cited by: 38
Author(s): Shixin Deng, Jun Ma, Lili Zhang, Faju Chen, Ziyang Sang, Zhongkui Jia, Ma Li
Software Mentions: 2
Published: over 7 years ago

10.1242/dmm.033043

SIL1, the ER Hsp70 co-chaperone, plays a critical role in maintaining skeletal muscle proteostasis and physiology
Cited by: 13
Author(s): Viraj P. Ichhaporia, Jieun Kim, Kanisha Kavdia, Peter Vogel, Linda H. Horner, Sharon Frase, Linda M. Hendershot
Software Mentions: 2
Published: almost 9 years ago

10.1111/cei.13194

From stability to dynamics: understanding molecular mechanisms of regulatory T cells through <i>Foxp3</i> transcriptional dynamics
Cited by: 15
Author(s): David Bending, M. Ono
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0011031

Acetaminophen Modulates the Transcriptional Response to Recombinant Interferon-β
Cited by: 16
Author(s): Aaron Farnsworth, Anathea S. Flaman, Shiv S. Prasad, Caroline Gravel, Andrew Williams, Carole L. Yauk, Xuguang Li
Software Mentions: 2
Published: over 16 years ago

10.1186/1472-6793-9-23

Transcriptional profile of isoproterenol-induced cardiomyopathy and comparison to exercise-induced cardiac hypertrophy and human cardiac failure
Cited by: 90
Author(s): Cristi L. Galindo, Michael A. Skinner, Mounir Errami, Lyle Olson, David A. Watson, Jing Li, John McCormick, Lauren J. McIver, Neil M. Kumar, Thinh Q. Pham, Harold R. Garner
Software Mentions: 2
Published: almost 17 years ago

10.1038/s41408-020-00344-9

In vitro and ex vivo gene expression profiling reveals differential kinetic response of HSPs and UPR genes is associated with PI resistance in multiple myeloma
Cited by: 9
Author(s): Amit Mitra, Harish Kumar, Vijay Ramakrishnan, Li Chen, Linda B. Baughn, Santosh Kumar, S. Vincent Rajkumar, Brian G. Van Ness
Software Mentions: 2
Published: about 6 years ago

10.1186/s12014-020-09290-x

Using phosphoproteomics data to understand cellular signaling: a comprehensive guide to bioinformatics resources
Cited by: 25
Author(s): Sara R. Savage, Bing Zhang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41413-019-0055-x

Extra-skeletal manifestations in mice affected by Clcn7-dependent autosomal dominant osteopetrosis type 2 clinical and therapeutic implications
Cited by: 12
Author(s): Antonio Maurizi, Mattia Capulli, A Curle, Rajvi Patel, Argia Ucci, JA Cortes, H Oxford, Shireen R. Lamandé, J Bateman, Nadia Rucci, Anna Teti
Software Mentions: 2
Published: over 7 years ago

10.1038/s41413-020-00120-2

MEF2C regulates osteoclastogenesis and pathologic bone resorption via c-FOS
Cited by: 25
Author(s): Takayuki Fujii, Koichi Murata, Se-Hwan Mun, Seyeon Bae, Ye Ji Lee, Tannia Pannellini, Ki‐Woon Kang, David J. Oliver, Kyung‐Hyun Park‐Min, Lionel B. Ivashkiv
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0151436

Understory Plant Community Composition Is Associated with Fine-Scale Above- and Below-Ground Resource Heterogeneity in Mature Lodgepole Pine (Pinus contorta) Forests
Cited by: 16
Author(s): Anne C.S. McIntosh, S. Ellen Macdonald, Sylvie A. Quideau
Software Mentions: 2
Published: over 10 years ago

10.1038/s41416-018-0196-5

MiR-532-5p suppresses renal cancer cell proliferation by disrupting the ETS1-mediated positive feedback loop with the KRAS-NAP1L1/P-ERK axis
Cited by: 58
Author(s): Wei Zhai, Junjie Ma, Ronggang Zhu, Chun‐Fang Xu, Jin Zhang, Yonghui Chen, Zhiguo Chen, Dongkui Gong, Jiayi Zheng, Chen Chen, Saiyang Li, Butang Li, Yiran Huang, Wei Xue, Junhua Zheng
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0019328

Identification of Hyaloperonospora arabidopsidis Transcript Sequences Expressed during Infection Reveals Isolate-Specific Effectors
Cited by: 57
Author(s): Adriana Cabral, Joost H. M. Stassen, Michael Seidl, Jaqueline Bautor, Jane E. Parker, Guido Van den Ackerveken
Software Mentions: 2
Published: over 15 years ago

10.1002/advs.202100311

Identification and Characterization of Robust Hepatocellular Carcinoma Prognostic Subtypes Based on an Integrative Metabolite‐Protein Interaction Network
Cited by: 23
Author(s): Di Chen, Yiran Zhang, Wen Wang, Huan Chen, Ting Ling, Renyu Yang, Yawei Wang, Chao Duan, Yu Liu, Xin Guo, Lei Fang, Wuguang Liu, Xiumei Liu, Jing Liu, Wuxiyar Otkur, Huan Qi, Xiaolong Liu, Tian Xia, Hong‐xu Liu, Hulin Piao
Software Mentions: 2
Published: over 5 years ago

10.3390/md13010249

LC-MS-Based Metabolomics Study of Marine Bacterial Secondary Metabolite and Antibiotic Production in Salinispora arenicola
Cited by: 42
Author(s): Utpal Bose, Amitha K. Hewavitharana, Yi Kai Ng, P. Nicholas Shaw, John A. Fuerst, Mark P. Hodson
Software Mentions: 2
Published: almost 12 years ago

10.3390/molecules23071527

Investigations of Structural Requirements for BRD4 Inhibitors through Ligand- and Structure-Based 3D QSAR Approaches
Cited by: 11
Author(s): Adeena Tahir, Rima D. Alharthy, Saadia Naseem, Natasha Mahmood, Mahmood Ahmed, Khuram Shahzad, Muhammad Usman Akhtar, Abdul Hameed, Irfan Sadiq, Haq Nawaz, Muhammad Muddassar
Software Mentions: 2
Published: over 8 years ago

10.3389/fimmu.2020.00816

EpitoCore: Mining Conserved Epitope Vaccine Candidates in the Core Proteome of Multiple Bacteria Strains
Cited by: 5
Author(s): Tayna S. Fiuza, J. A. S. Lima, Gustavo Souza
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-11-474

Modulation of the maternal immune system by the pre-implantation embryo
Cited by: 112
Author(s): Caroline Walker, S. Meier, Mathew D Littlejohn, Klaus Lehnert, J.R. Roche, Murray D. Mitchell
Software Mentions: 2
Published: almost 17 years ago

10.3389/fimmu.2021.701656

The Transcriptomic Profile of Monocytes from Patients With Sjögren’s Syndrome Is Associated With Inflammatory Parameters and Is Mimicked by Circulating Mediators
Cited by: 11
Author(s): Ana P Lopes, Cornelis P. J. Bekker, Maarten R Hillen, Sofie L M Blokland, Anneline C. Hinrichs, Aridaman Pandit, Aike A. Kruize, Timothy R D J Radstake, Joël A G van Roon
Software Mentions: 2
Published: about 5 years ago

10.3389/fnhum.2017.00650

Categorization for Faces and Tools—Two Classes of Objects Shaped by Different Experience—Differs in Processing Timing, Brain Areas Involved, and Repetition Effects
Cited by: 6
Author(s): Vladimir V. Kozunov, Anastasia Nikolaeva, Tatiana A. Stroganova
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12868-015-0212-0

T cell deficiency in spinal cord injury: altered locomotor recovery and whole-genome transcriptional analysis
Cited by: 20
Author(s): David Satzer, Catherine Miller, Jacob R. Maxon, Joseph Voth, Christina DiBartolomeo, Rebecca Mahoney, James R. Dutton, Walter C. Low, Ann M. Parr
Software Mentions: 2
Published: almost 11 years ago

10.3389/fnhum.2015.00421

Basal ganglia and cortical networks for sequential ordering and rhythm of complex movements
Cited by: 21
Author(s): Jeffery G. Bednark, Megan E. J. Campbell, Ross Cunnington
Software Mentions: 2
Published: about 11 years ago

10.1186/s12859-015-0527-y

Cell-composition effects in the analysis of DNA methylation array data: a mathematical perspective
Cited by: 88
Author(s): E. Andrés Houseman, Karl T. Kelsey, John K. Wiencke, Carmen J. Marsit
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0256710

Inter-metropolitan land price characteristics and pattern in the Beijing-Tianjin-Hebei urban agglomeration, China
Cited by: 4
Author(s): Pengfei An, Can Li, Yajing Duan, Jun Ge, Xiangbo Feng
Software Mentions: 2
Published: about 5 years ago

10.1242/dmm.039578

Reversion of tumor hepatocytes to normal hepatocytes during liver tumor regression in an oncogene transgenic zebrafish model
Cited by: 12
Author(s): Yan Li, Ira Agrawal, Zhiyuan Gong
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0232160

The hepatic transcriptome of the turkey poult (Meleagris gallopavo) is minimally altered by high inorganic dietary selenium
Cited by: 4
Author(s): Rachel M Taylor, Kristelle M. Mendoza, Juan E. Abrahante, Kent M. Reed, Roger A. Sunde
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2020.00070

Hippocampal DNA Methylation in a Mouse Model of Fetal Alcohol Spectrum Disorder That Includes Maternal Separation Stress Only Partially Explains Changes in Gene Expression
Cited by: 11
Author(s): Bonnie Alberry, Shiva M. Singh
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2018.00590

PlantEAR: Functional Analysis Platform for Plant EAR Motif-Containing Proteins
Cited by: 34
Author(s): Jiaotong Yang, Yue Liu, Hengyu Yan, Tian Tian, Qi You, Liwei Zhang, Wenying Xu, Zhen Su
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12864-018-5195-7

Genetic ancestry, admixture and health determinants in Latin America
Cited by: 68
Author(s): Emily T. Norris, Lu Wang, Andrew B. Conley, Lavanya Rishishwar, Leonardo Mariño-Ramírez, Augusto Valderrama-Aguirre, I. King Jordan
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2164-11-194

Evidence of perturbations of cell cycle and DNA repair pathways as a consequence of human and murine NF1-haploinsufficiency
Cited by: 17
Author(s): Alexander Pemov, Caroline Park, Karlyne M. Reilly, Douglas R. Stewart
Software Mentions: 2
Published: over 16 years ago

10.1186/s12962-018-0124-9

Combining A4R and MCDA in priority setting for health
Cited by: 4
Author(s): Norman Daniels
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0211291

Aberrant FAM64A mRNA expression is an independent predictor of poor survival in pancreatic cancer
Cited by: 50
Author(s): Yan Jiao, Zhuo Fu, Yanqing Li, Wei Zhang, Yahui Liu
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-019-5880-1

Epigenome-wide skeletal muscle DNA methylation profiles at the background of distinct metabolic types and ryanodine receptor variation in pigs
Cited by: 23
Author(s): Siriluck Ponsuksili, Nares Trakooljul, Basavaraj Sajjanar, Frieder Hadlich, Eduard Muráni, Klaus Wimmers
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2021.640951

Explore the Underlying Mechanism Between Atopic Dermatitis and Major Depressive Disorder
Cited by: 2
Author(s): Tao Yang, Xuehua Huang, Jiajun Xu, Mingjing Situ, Qingqing Xiao, Kamil Can Kural, Yan Kang
Software Mentions: 2
Published: over 5 years ago

10.1186/bcr3567

An optimized five-gene multi-platform predictor of hormone receptor negative and triple negative breast cancer metastatic risk
Cited by: 28
Author(s): Christina Yau, John J. Sninsky, Shirley Kwok, Alice Wang, Amy C. Degnim, James N. Ingle, Cheryl Gillett, Andrew Tutt, Fred Waldman, Dan H. Moore, Laura J. Esserman, Christopher C. Benz
Software Mentions: 2
Published: about 13 years ago

10.1002/ctm2.187

Tumor microenvironment characterization in head and neck squamous carcinoma reveals distinct genomic alterations and clinical outcomes
Cited by: 2
Author(s): Run Shi, Xuanwen Bao, Jing Sun, Shun Lü, Claus Belka, Minglun Li
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0102498

Sediment and Turbidity Associated with Offshore Dredging Increase Coral Disease Prevalence on Nearby Reefs
Cited by: 166
Author(s): F. Joseph Pollock, Joleah B. Lamb, Stuart N. Field, Scott F. Heron, Britta Schaffelke, George Shedrawi, David G. Bourne, Bette L. Willis
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0065571

Peptidomic Identification of Serum Peptides Diagnosing Preeclampsia
Cited by: 36
Author(s): Qiaojun Wen, Linda Y. Liu, Ting Yang, Cantas Alev, Shao-Yi Wu, David K. Stevenson, Guojun Sheng, Atul J. Butte, Xuefeng B. Ling
Software Mentions: 2
Published: over 13 years ago

10.1186/s13058-019-1142-z

Parity predisposes breasts to the oncogenic action of PAPP-A and activation of the collagen receptor DDR2
Cited by: 18
Author(s): Elizabeth Slocum, Amanda Craig, Augusto Villanueva, Doris Germain
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2020.617136

Revealing the Interactions Between Diabetes, Diabetes-Related Diseases, and Cancers Based on the Network Connectivity of Their Related Genes
Cited by: 1
Author(s): Lijuan Zhu, Xu Ju, Qiuling Wang, Ailan Wang, Chao Li, Geng Tian, Huajun Zhang, Size Chen
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2164-9-105

MADIBA: A web server toolkit for biological interpretation of Plasmodium and plant gene clusters
Cited by: 25
Author(s): Philip Law, Clotilde Claudel‐Renard, Fourie Joubert, Abraham I. Louw, David Kenneth Berger
Software Mentions: 2
Published: over 18 years ago

10.3389/fgene.2021.701405

Cox-sMBPLS: An Algorithm for Disease Survival Prediction and Multi-Omics Module Discovery Incorporating Cis-Regulatory Quantitative Effects
Cited by: 0
Author(s): Nasim Vahabi, Caitrin W. McDonough, Ankit A. Desai, Larisa H. Cavallari, Julio D. Duarte, George Michailidis
Software Mentions: 2
Published: about 5 years ago

10.1186/bcr3689

Parity-related molecular signatures and breast cancer subtypes by estrogen receptor status
Cited by: 35
Author(s): Melissa Rotunno, Xuezheng Sun, Jonine D. Figueroa, Mark E. Sherman, Montserrat García-Closas, Paul S. Meltzer, Tyisha Williams, Sallie S. Schneider, D. Joseph Jerry, Xiaohong R. Yang, Melissa A. Troester
Software Mentions: 2
Published: over 12 years ago

10.1186/s40478-019-0705-7

Transcriptome analysis of normal-appearing white matter reveals cortisol- and disease-associated gene expression profiles in multiple sclerosis
Cited by: 14
Author(s): Jeroen Melief, Marie Orre, Koen Bossers, C.G. van Eden, Karianne Schuurman, Matthew R. J. Mason, Joost Verhaagen, Jörg Hamann, Inge Huitinga
Software Mentions: 2
Published: over 7 years ago

10.1186/s40169-017-0174-1

Post‐zygotic genomic changes in glutamate and dopamine pathway genes may explain discordance of monozygotic twins for schizophrenia
Cited by: 11
Author(s): Christina A Castellani, M.G. Melka, Jane L. Gui, Anthony J. Gallo, Richard O’Reilly, Shiva M. Singh
Software Mentions: 2
Published: almost 9 years ago

10.3389/fgene.2020.526309

Comparative Transcriptome Analyses of Longissimus thoracis Between Pig Breeds Differing in Muscle Characteristics
Cited by: 9
Author(s): Chunbo Cai, Meng Li, Yanwei Zhang, Shu Meng, Yang Yang, Pengfei Gao, Xiaohong Guo, Guoqing Cao
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2019.00633

FindTargetsWEB: A User-Friendly Tool for Identification of Potential Therapeutic Targets in Metabolic Networks of Bacteria
Cited by: 4
Author(s): Thiago Castanheira Merigueti, Marcia W. Carneiro, Ana Paula D'Allincourt Carvalho-Assef, Floriano Paes Silva, Fabrício Alves Barbosa Silva
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0246259

Prediction of 72-hour mortality in patients with extremely high serum C-reactive protein levels using a novel weighted average of risk scores
Cited by: 5
Author(s): Kai Saito, Hitoshi Sugawara, Kiyoshi Ichihara, Takushi X. Watanabe, Akira Ishii, Takeo Fukuchi
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2021.647141

Multi-Omics Data Fusion via a Joint Kernel Learning Model for Cancer Subtype Discovery and Essential Gene Identification
Cited by: 10
Author(s): Jie Feng, Limin Jiang, Shuhao Li, Jijun Tang, Wen Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s12882-021-02447-2

Comprehensive analysis of diabetic nephropathy expression profile based on weighted gene co-expression network analysis algorithm
Cited by: 17
Author(s): Alieh Gholaminejad, Mohammad Fathalipour, Amir Roointan
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2021.577623

Gene Set Enrichment Analysis of Interaction Networks Weighted by Node Centrality
Cited by: 23
Author(s): Alessandra Zito, Marta Lualdi, Paola Granata, Dario Cocciadiferro, Antonio Novelli, Tiziana Alberio, Rosario Casalone, Mauro Fasano
Software Mentions: 2
Published: over 5 years ago

10.3390/metabo10080325

Comparative Metabolomic Analysis of Dendrobium officinale under Different Cultivation Substrates
Cited by: 23
Author(s): Si-Min Zuo, Hai‐Dong Yu, Weimin Zhang, Qiuping Zhong, Wenxue Chen, Yong‐Huan Yun, Haiming Chen
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0170458

Transcriptome-wide co-expression analysis identifies LRRC2 as a novel mediator of mitochondrial and cardiac function
Cited by: 10
Author(s): Chris McDermott-Roe, Marion Leleu, Glenn C. Rowe, Oleg Palygin, John D. Bukowy, Judy Kuo, Monika Rech, Steffie Hermans-Beijnsberger, S. Schaefer, Eleonora Adami, Esther E. Creemers, Matthias Heinig, Blanche Schroen, Zoltàn Arany, Enrico Petretto, Aron M. Geurts
Software Mentions: 2
Published: over 9 years ago

Projects: pypi: analysis

Science Score: 90/100

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Penalties:

Papers Mentioning analysis 2,036