pypi: Zen | Projects | Ecosyste.ms: Papers

10.3390/cells8101146

Tubulin-Dependent Transport of Connexin-36 Potentiates the Size and Strength of Electrical Synapses
Cited by: 12
Author(s): Cherie Alicia Brown, Cristiane del Corsso, Christiane Zoidl, Logan W. Donaldson, David C. Spray, Georg Zoidl
Software Mentions: 2
Published: about 7 years ago

10.1007/s00412-018-0671-z

Three-dimensional analysis of nuclear heterochromatin distribution during early development in the rabbit
Cited by: 6
Author(s): Amélie Bonnet-Garnier, Kiên Kiêu, Tiphaine Aguirre-Lavin, Krisztina Tar, Pierre Flores, Zichuan Liu, Nathalie Peynot, Martine Chebrout, András Dinnyés, Véronique Duranthon, Nathalie Beaujean
Software Mentions: 2
Published: over 8 years ago

10.1242/bio.045674

The ventral epithelium of Trichoplax adhaerens deploys in distinct patterns cells that secrete digestive enzymes, mucus or diverse neuropeptides
Cited by: 24
Author(s): Tatiana D. Mayorova, Katherine Hammar, Christine A. Winters, Thomas S. Reese, Carolyn L. Smith
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.celrep.2021.109700

Multiplexed drug-based selection and counterselection genetic manipulations in Drosophila
Cited by: 9
Author(s): Nick Matinyan, Mansi Karkhanis, Yezabel Gonzalez, Antrix Jain, Alexander B. Saltzman, Anna Malovannaya, Alejandro Sarrión-Perdigones, Herman A. Dierick, Koen J. T. Venken
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0066918

Effect of Cell Shape and Dimensionality on Spindle Orientation and Mitotic Timing
Cited by: 16
Author(s): Mirren Charnley, Fabian Anderegg, René Holtackers, Marcus Textor, Patrick Meraldi
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0180871

Can single molecule localization microscopy be used to map closely spaced RGD nanodomains?
Cited by: 9
Author(s): Mahdie Mollazade, Thibault Tabarin, Philip R. Nicovich, Alexander H. Soeriyadi, Daniel J. Nieves, J. Justin Gooding, Katharina Gaus
Software Mentions: 2
Published: over 9 years ago

10.1186/s40478-019-0871-7

Synapse alterations precede neuronal damage and storage pathology in a human cerebral organoid model of CLN3-juvenile neuronal ceroid lipofuscinosis
Cited by: 38
Author(s): Gemma Gomez-Giro, Jonathan Arias, Javier Jarazo, Dagmar Zeuschner, Muhammad Ali, Nina Possemis, Silvia Bolognin, Rashi Halder, Christian Jäger, Willemijn F. E. Kuper, Peter M. van Hasselt, Holm Zaehres, Antonio del Sol, Herman van der Putten, Hans R. Schöler, Jens Christian Schwamborn
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0082083

Dendritic Branch Intersections Are Structurally Regulated Targets for Efficient Axonal Wiring and Synaptic Clustering
Cited by: 3
Author(s): Monika Pinchas, Danny Baranes
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41422-019-0216-x

Sodium oligomannate therapeutically remodels gut microbiota and suppresses gut bacterial amino acids-shaped neuroinflammation to inhibit Alzheimer’s disease progression
Cited by: 628
Author(s): Xinyi Wang, Guangqiang Sun, Teng Feng, Jing Zhang, Xun Huang, Tao Wang, Zuoquan Xie, Xingkun Chu, Jun Yang, Huan Wang, Shuaishuai Chang, Yanxue Gong, Lingfei Ruan, Guanqun Zhang, Siyuan Yan, Li-Li Wen, Chen Du, Da Yang, Qingli Zhang, Feifei Lin, Jia Liu, Haiyan Zhang, Changrong Ge, Shifu Xiao, Jian Ding, Meiyu Geng
Software Mentions: 2
Published: about 7 years ago

10.1038/s42003-021-02322-8

Testicular somatic cell-like cells derived from embryonic stem cells induce differentiation of epiblasts into germ cells
Cited by: 6
Author(s): Holly M. Rore, Nicholas Owen, Raúl E. Piña-Aguilar, Kevin Docherty, Ryohei Sekido
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0249068

Lymphatic endothelial-cell expressed ACKR3 is dispensable for postnatal lymphangiogenesis and lymphatic drainage function in mice
Cited by: 6
Author(s): Elena C. Sigmund, Lilian Baur, Philipp Schineis, Jorge Arasa, Víctor Collado-Díaz, Martina Vranova, Rolf A.K. Stahl, Marcus Thelen, Cornelia Halin
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0235691

A pilot study investigating the effects of voluntary exercise on capillary stalling and cerebral blood flow in the APP/PS1 mouse model of Alzheimer’s disease
Cited by: 15
Author(s): Kaja Falkenhain, Nancy E. Ruiz-Uribe, Mohammad Haft‐Javaherian, Muhammad Ali, Stall Catchers, Pietro Michelucci, Chris B. Schaffer, Oliver Bracko
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0235360

Sodium–calcium exchanger 1 is the key molecule for urinary potassium excretion against acute hyperkalemia
Cited by: 6
Author(s): Wakana Shoda, Naohiro Nomura, Fumiaki Ando, Hideaki Tagashira, Takahiro Iwamoto, Akihito Ohta, Kiyoshi Isobe, Takayasu Mori, Koichiro Susa, Eisei Sohara, Tatemitsu Rai, Shinichi Uchida
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0136396

Identification of a Cryptic Bacterial Promoter in Mouse (mdr1a) P-Glycoprotein cDNA
Cited by: 5
Author(s): Kristen M. Pluchino, Dominic Esposito, Janna K. Moen, Matthew D. Hall, James P. Madigan, Suneet Shukla, Lauren V. Procter, Vanessa Wall, Thomas D. Schneider, Ian A. Pringle, Suresh V. Ambudkar, Deborah R. Gill, Stephen C. Hyde, Michael M. Gottesman
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0150320

Streptococcus pneumoniae Cell-Wall-Localized Phosphoenolpyruvate Protein Phosphotransferase Can Function as an Adhesin: Identification of Its Host Target Molecules and Evaluation of Its Potential as a Vaccine
Cited by: 14
Author(s): Yaffa Mizrachi Nebenzahl, Karin Blau, Tatyana Kushnir, Marilou Shagan, Maxim Portnoi, Avraham Cohen, Shalhevet Azriel, Itai Malka, Asad Adawi, Daniel Kafka, Shahar Dotan, Gali Guterman, Shany Troib, Tali Fishilevich, Jonathan M. Gershoni, Alex Braiman, Andrea M. Mitchell, Timothy J. Mitchell, Nurith Porat, Inna Goliand, Vered Chalifa‐Caspi, Edwin Swiatlo, Michael Tal, R. John Ellis, Natalie Elia, Ron Dagan
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0251474

Analysis of blood parameters and molecular endometrial markers during early reperfusion in two ovine models of uterus transplantation
Cited by: 3
Author(s): Marie Carbonnel, Nathalie Cornet, Aurélie Revaux, Angéline Favre-Inhofer, Laurent Galio, Mariam Raliou, Anne Couturier-Tarrade, Corinne Giraud-Delville, Gilles Charpigny, Valérie Gelin, Olivier Dubois, Barbara Hersant, Romain Bosc, Raphaël Coscas, François Vialard, Pascale Chavatte‐Palmer, Christophe Richard, Olivier Sandra, Jean Marc Ayoubi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0200789

Eyes shut homolog is important for the maintenance of photoreceptor morphology and visual function in zebrafish
Cited by: 35
Author(s): Muriël Messchaert, Margo Dona, Sanne Broekman, Theo Peters, Julio C. Corral-Serrano, Ralph Slijkerman, Erwin van Wijk, Rob W.J. Collin
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0182407

Protective effects on the retina after ranibizumab treatment in an ischemia model
Cited by: 23
Author(s): Stephanie C. Joachim, Marina Renner, Jacqueline Reinhard, Carsten Theiß, Caroline May, Stephanie Lohmann, Sabrina Reinehr, Gesa Stute, Andréas Faissner, Katrin Marcus, H. Burkhard Dick
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0144572

Supervised Machine Learning for Classification of the Electrophysiological Effects of Chronotropic Drugs on Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes
Cited by: 25
Author(s): Christopher M. Heylman, Rupsa Datta, Agua Sobrino, Steven C. George, Enrico Gratton
Software Mentions: 2
Published: almost 11 years ago

10.3390/microorganisms7090352

The Architecture of Monospecific Microalgae Biofilms
Cited by: 23
Author(s): Andrea Fanesi, Armelle Paule, Olivier Bernard, Romain Briandet, Filipa Lopes
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0220019

The use of mixed collagen-Matrigel matrices of increasing complexity recapitulates the biphasic role of cell adhesion in cancer cell migration: ECM sensing, remodeling and forces at the leading edge of cancer invasion
Cited by: 56
Author(s): María Anguiano, Xabier Morales, Carlos Castilla, Andrés de la Peña, Cristina Ederra, Martín Martínez, Mikel Ariz, Maider Esparza, H. Amaveda, M. Mora, Nieves Movilla, José Manuel García Aznar, Iván Cortés‐Domínguez, Carlos Ortiz‐de‐Solórzano
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0073962

The Human Minor Histocompatibility Antigen1 Is a RhoGAP
Cited by: 28
Author(s): Bart Jan de Kreuk, Antje Schaefer, Eloise C. Anthony, Simon Tol, Mar Fernandez‐Borja, Dirk Geerts, J. Pool, Lothar Hambach, Els Goulmy, Peter L. Hordijk
Software Mentions: 2
Published: about 13 years ago

10.3390/mi9120660

Separation and Characterization of Prostate Cancer Cell Subtype according to Their Motility Using a Multi-Layer CiGiP Culture
Cited by: 9
Author(s): Linxiang Wang, Ying Zhou, Jingjing Fu, Zhisong Lu
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0226049

Loss of family with sequence similarity 13, member A exacerbates pulmonary hypertension through accelerating endothelial-to-mesenchymal transition
Cited by: 10
Author(s): Pranindya Rinastiti, Koji Ikeda, Elda Putri Rahardini, Kazuya Miyagawa, Naoki Tamada, Yuko Kuribayashi, Ken‐ichi Hirata, Noriaki Emoto
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0042563

Rho GTPase Expression in Human Myeloid Cells
Cited by: 20
Author(s): Suzanne F. G. van Helden, Eloise C. Anthony, Rob Dee, Peter L. Hordijk
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0239176

Apoptosis in idiopathic inflammatory myopathies with partial invasion; a role for CD8+ cytotoxic T cells?
Cited by: 8
Author(s): Olof Danielsson, Bo Häggqvist, Liv Gröntoft, Karin Öllinger, Jan Ernerudh
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0138381

The Role of ARF6 in Biliary Atresia
Cited by: 51
Author(s): Mylarappa Ningappa, Juhoon So, Joseph T. Glessner, Chethan Ashokkumar, Sarangarajan Ranganathan, Jin‐Young Min, Brandon W. Higgs, Qing Sun, Kimberly Haberman, Lori Schmitt, Sílvia Vilarinho, Pramod K. Mistry, Gerard Vockley, Anil Dhawan, George K. Gittes, Hákon Hákonarson, Ronald Jaffe, Shankar Subramaniam, Donghun Shin, Rakesh Sindhi
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0053918

Profilin 1 as a Target for Cathepsin X Activity in Tumor Cells
Cited by: 30
Author(s): Urša Pečar Fonović, Zala Jevnikar, Matija Rojnik, Bojan Doljak, Marko Fonović, Polona Jamnik, Janko Kos
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0148379

BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models
Cited by: 18
Author(s): Cemal Cagatay Bilgin, Gerald Fontenay, Qingsu Cheng, Hang Chang, Ju Han, Bahram Parvin
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0246244

EZH2 inhibition decreases neuroblastoma proliferation and in vivo tumor growth
Cited by: 11
Author(s): Laura V. Bownes, Arthur Robin Williams, Raoud Marayati, Laura L. Stafman, Hooper R. Markert, Colin H. Quinn, Nikita Wadhwani, Jamie M. Aye, Jerry E. Stewart, Karina J. Yoon, Elizabeth Mroczek‐Musulman, Elizabeth A. Beierle
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0251273

Catalysis of the electrochemical oxygen reduction reaction (ORR) by animal and human cells
Cited by: 3
Author(s): Simon Guette-Marquet, Christine Roques, Alain Bergel
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0119864

Differential Dependence on N-Glycosylation of Anthrax Toxin Receptors CMG2 and TEM8
Cited by: 3
Author(s): Sarah Friebe, Julie Deuquet, F. Gisou van der Goot
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0136362

Proteins with Intrinsically Disordered Domains Are Preferentially Recruited to Polyglutamine Aggregates
Cited by: 30
Author(s): Maggie P. Wear, Dmitry Kryndushkin, Robert N. O’Meally, Jason L. Sonnenberg, Robert N. Cole, Frank Shewmaker
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0215908

Wild-type and SAMP8 mice show age-dependent changes in distinct stem cell compartments of the interfollicular epidermis
Cited by: 8
Author(s): Gopakumar Changarathil, Karina Ramírez, Hiroko Isoda, Aiko Sada, Hiromi Yanagisawa
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0064426

Crystal Structure of Crataeva tapia Bark Protein (CrataBL) and Its Effect in Human Prostate Cancer Cell Lines
Cited by: 19
Author(s): Rodrigo S. Ferreira, Dongwen Zhou, Joana Gasperazzo Ferreira, Mariana Cristina Cabral Silva, Rosemeire A. Silva-Lucca, Reinhard Mentele, Edgar Julian Paredes‐Gamero, Thiago Carlos Bertolin, Maria Tereza dos Santos Correia, Patrícia Maria Guedes Paiva, Alla Gustchina, Alexander Wlodawer, Maria Luíza Vilela Oliva
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pgen.1009817

A unique cell wall synthetic response evoked by glucosamine determines pathogenicity-associated fungal cellular differentiation
Cited by: 11
Author(s): Pengjie Hu, Hao Ding, Ling Shen, Guang‐Jun He, Huimin Liu, Xiuyun Tian, Changyu Tao, Xiangzheng Bai, Jingnan Liang, Cheng Jin, Xinping Xu, Ence Yang, Linqi Wang
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pgen.1009700

Oligopaint DNA FISH reveals telomere-based meiotic pairing dynamics in the silkworm, Bombyx mori
Cited by: 8
Author(s): Leah F. Rosin, José Pedro Gil, Ines A. Drinnenberg, Elissa P. Lei
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0095248

The Kinematics of Cytotoxic Lymphocytes Influence Their Ability to Kill Target Cells
Cited by: 20
Author(s): Purnima Bhat, Graham R. Leggatt, Klaus I. Matthaei, Ian H. Frazer
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pgen.1007935

The nuclear hormone receptor NHR-86 controls anti-pathogen responses in C. elegans
Cited by: 38
Author(s): Nicholas Peterson, Hilary K. Cheesman, Liu P, Sarah M. Anderson, Kyle J. Foster, Richa Chhaya, Paola N. Perrat, Jose Thekkiniath, Qiyuan Yang, Cole M. Haynes, Read Pukkila-Worley
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pntd.0007675

Polarized lung inflammation and Tie2/angiopoietin-mediated endothelial dysfunction during severe Orientia tsutsugamushi infection
Cited by: 16
Author(s): Brandon Trent, Yuejin Liang, Yan Xing, Marisol Esqueda, Wenyan Yang, Nam Hyuk Cho, Hong Il Kim, So Hyun Kim, Thomas R. Shelite, Jiyang Cai, Jiaren Sun, Donald H. Bouyer, Jinjun Liu, Lynn Soong
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1009647

Tau, XMAP215/Msps and Eb1 co-operate interdependently to regulate microtubule polymerisation and bundle formation in axons
Cited by: 16
Author(s): Ines Hahn, André Voelzmann, Jill Parkin, Judith B. Fülle, Paula G. Slater, Laura Anne Lowery, Natalia Sánchez‐Soriano, Andreas Prokop
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1007567

Ras-ERK-ETS inhibition alleviates neuronal mitochondrial dysfunction by reprogramming mitochondrial retrograde signaling
Cited by: 14
Author(s): Olivia F. Duncan, Lucy Granat, Ramya Ranganathan, Vandana Singh, David Mazaud, Manolis Fanto, David Chambers, Clive Ballard, J.E. Bateman
Software Mentions: 2
Published: about 8 years ago

10.1161/ATVBAHA.119.313430

Novel Plaque Enriched Long Noncoding RNA in Atherosclerotic Macrophage Regulation (PELATON)
Cited by: 40
Author(s): John Hung, Jessica P. Scanlon, Amira D. Mahmoud, Julie Rodor, Margaret D. Ballantyne, M Fontaine, Lieve Temmerman, Jakub Kaczynski, Katie Connor, Raghu Bhushan, Erik A. L. Biessen, David E. Newby, Judith C. Sluimer, Andrew H. Baker
Software Mentions: 2
Published: over 6 years ago

10.1242/bio.039115

Quantitative analysis of the ThrbCRM1-centered gene regulatory network
Cited by: 4
Author(s): Benjamin Souferi, Mark M. Emerson
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41422-018-0080-0

STAT3 associates with vacuolar H+-ATPase and regulates cytosolic and lysosomal pH
Cited by: 74
Author(s): Bin Liu, Johan Palmfeldt, Lin Lin, Alexandria Colaço, Kim Katrine Bjerring Clemmensen, Jinrong Huang, Fengping Xu, Xin Liu, Kenji Maeda, Yonglun Luo, Marja Jäättelä
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pgen.1009184

Cyclin B3 activates the Anaphase-Promoting Complex/Cyclosome in meiosis and mitosis
Cited by: 10
Author(s): Damien Garrido, Mohammed Bourouh, Éric Bonneil, Pierre Thibault, Andrew Swan, Vincent Archambault
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.molcel.2021.03.020

Non-canonical autophagy drives alternative ATG8 conjugation to phosphatidylserine
Cited by: 84
Author(s): Joanne Durgan, Alf Håkon Lystad, Katherine E. Sloan, Sven R. Carlsson, Michael Wilson, Elena Marcassa, Rachel Ulferts, Judith Webster, Andrea F. Lopez-Clavijo, Michael J.O. Wakelam, Rupert Beale, Anne Simonsen, David Oxley, Oliver Florey
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pntd.0007352

The most abundant cyst wall proteins of Acanthamoeba castellanii are lectins that bind cellulose and localize to distinct structures in developing and mature cyst walls
Cited by: 17
Author(s): Pamela Magistrado-Coxen, Yousuf Aqeel, Angelo Lopez, John R. Haserick, Breeanna R. Urbanowicz, Catherine E. Costello, John Samuelson
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pgen.1004066

ComEA Is Essential for the Transfer of External DNA into the Periplasm in Naturally Transformable Vibrio cholerae Cells
Cited by: 96
Author(s): Patrick Seitz, Hassan Pezeshgi Modarres, Sandrine Borgeaud, Roman D. Bulushev, Lorenz J. Steinbock, Aleksandra Radenović, Matteo Dal Peraro, Melanie Blokesch
Software Mentions: 2
Published: almost 13 years ago

10.3390/cells9020355

Impaired Nuclear Export of the Ribonucleoprotein Complex and Virus-Induced Cytotoxicity Combine to Restrict Propagation of the A/Duck/Malaysia/02/2001 (H9N2) Virus in Human Airway Cells
Cited by: 2
Author(s): Sriram Kumar, David Yeo, Nisha Muralidharan, Soak Kuan Lai, Cathlyn Tong, Boon Huan Tan, Richard J. Sugrue
Software Mentions: 2
Published: over 6 years ago

10.1128/MCB.00398-17

Creation of Stable Heterothallic Strains of Komagataella phaffii Enables Dissection of Mating Gene Regulation
Cited by: 19
Author(s): Lina Heistinger, Brigitte Gasser, Diethard Mattanovich
Software Mentions: 2
Published: almost 9 years ago

10.3390/metabo11090571

Unravelling the Puzzle of Anthranoid Metabolism in Living Plant Cells Using Spectral Imaging Coupled to Mass Spectrometry
Cited by: 1
Author(s): Quentin Chevalier, Jean-Baptiste Gallé, Nicolas Wasser, Valérie Mazan, Claire Villette, Jérôme Mutterer, Maria Mercedes Elustondo, Nicolas Girard, Mourad Elhabiri, Hubert Schaller, Andréa Hemmerlin, Catherine Vonthron-Sénécheau
Software Mentions: 2
Published: about 5 years ago

10.1038/s42003-021-02404-7

Essential roles of plexin-B3+ oligodendrocyte precursor cells in the pathogenesis of Alzheimer’s disease
Cited by: 5
Author(s): Naomi Nihonmatsu-Kikuchi, Xiu-Jun Yu, Yoshiki Matsuda, Nobuyuki Ozawa, Taeko Ito, Kazuhito Satou, Tadashi Kaname, Yasushi Iwasaki, Akio Akagi, Mari Yoshida, Shuta Toru, Katsuíku Hirokawa, Akihiko Takashima, Masato Hasegawa, Toshiki Uchihara, Yoshitaka Tatebayashi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1007795

A single class of ARF GTPase activated by several pathway-specific ARF-GEFs regulates essential membrane traffic in Arabidopsis
Cited by: 25
Author(s): Manoj K. Singh, Sandra Richter, Hauke Beckmann, Marika Kientz, York‐Dieter Stierhof, Nadine Anders, Florian Fäßler, Michael L. Nielsen, Christian Knöll, Alexis Thomann, Mirita Franz‐Wachtel, Boris Maček, Karen Skriver, Peter Pimpl, Gerd Jürgens
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pcbi.1002671

Sub-diffraction Limit Localization of Proteins in Volumetric Space Using Bayesian Restoration of Fluorescence Images from Ultrathin Specimens
Cited by: 22
Author(s): Gordon Wang, Stephen J. Smith
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pgen.1007851

Meiosis-specific prophase-like pathway controls cleavage-independent release of cohesin by Wapl phosphorylation
Cited by: 31
Author(s): Kiran Challa, Ghanim Fajish, Miki Shinohara, Franz Klein, Susan M. Gasser, Atsushi Shinohara
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13007-019-0406-z

Multicolour three dimensional structured illumination microscopy of immunolabeled plant microtubules and associated proteins
Cited by: 18
Author(s): Tereza Vavrdová, Olga Šamajová, Pavel Křenek, Miroslav Ovečka, Pavlína Floková, R. Šnaurová, Jozef Šamaj, George Komis
Software Mentions: 2
Published: over 7 years ago

10.1007/s00401-017-1783-x

Changes in chromatin state reveal ARNT2 at a node of a tumorigenic transcription factor signature driving glioblastoma cell aggressiveness
Cited by: 19
Author(s): Alexandra Bogeas, Ghislaine Morvan-Dubois, Elias A. El-Habr, François Lejeune, Matthieu Defrance, Ashwin Narayanan, Klaudia Kuranda, Fanny Burel‐Vandenbos, Salwa Sayd, Virgile Delaunay, Luiz Gustavo Dubois, Hugues Parrinello, Stéphanie Rialle, Sylvie Fabrega, Ahmed Idbaïh, Jacques Haiech, Ivan Bièche, Thierry Virolle, Michèle Goodhardt, Hervé Chneiweiss, Marie Pierre Junier
Software Mentions: 2
Published: almost 9 years ago

10.1016/j.dib.2019.103858

Palynological and X-ray fluorescence (XRF) data of Carnian (Late Triassic) formations from western Hungary
Cited by: 4
Author(s): Viktória Baranyi, Ágnes Rostási, Béla Raucsik, Wolfram M. Kürschner
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2105-15-S16-S6

FMAj: a tool for high content analysis of muscle dynamics in Drosophila metamorphosis
Cited by: 9
Author(s): Yadav Kuleesha, Wee Choo Puah, Feng Lin, Martin Wasser
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pbio.3001148

Molecular basis of F-actin regulation and sarcomere assembly via myotilin
Cited by: 9
Author(s): Július Košťan, Miha Pavšič, Vid Puž, Thomas C. Schwarz, Friedel Drepper, Sibylle Molt, Melissa A. Graewert, Claudia Schreiner, Sara Sajko, Peter F.M. van der Ven, Adekunle Onipe, Dmitri I. Svergun, Bettina Warscheid, Robert Konrat, Dieter O. Fürst, Brigita Lenarčič, Kristina Djinović-Carugo
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules25071655

A Tryptophan Metabolite, 8-Hydroxyquinaldic Acid, Exerts Antiproliferative and Anti-Migratory Effects on Colorectal Cancer Cells
Cited by: 17
Author(s): Katarzyna Walczak, Ewa Langner, Karolina Szalast, Anna Makuch-Kocka, Piotr Pożarowski, Tomasz Plech
Software Mentions: 2
Published: over 6 years ago

10.1111/acel.12835

Targeting the phospholipase A2 receptor ameliorates premature aging phenotypes
Cited by: 28
Author(s): Audrey Griveau, Clotilde Wiel, Benjamin Le Calvé, Dorian V. Ziegler, Sophia Djebali, Marine Warnier, Nadine Martin, Jacqueline Marvel, David Vindrieux, Martin O. Bergö, David Bernard
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pgen.1005998

Arabidopsis AtMORC4 and AtMORC7 Form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes
Cited by: 37
Author(s): C. Jake Harris, Dylan Husmann, Wanlu Liu, Farid El Kasmi, Haifeng Wang, Ashot Papikian, William A. Pastor, Guillaume Moissiard, Ajay A. Vashisht, Jeffery L. Dangl, James A. Wohlschlegel, Steven E. Jacobsen
Software Mentions: 2
Published: over 10 years ago

10.1242/dmm.023366

Deregulated expression of HDAC9 in B-cells promotes development of lymphoproliferative disease and lymphoma
Cited by: 34
Author(s): Veronica Gil, Govind Bhagat, Louise Howell, Jiyuan Zhang, Chae Hwa Kim, Sven Stengel, Francisco Vega, Arthur Zelent, Kevin Petrie
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0250262

Neonatal valproic acid exposure produces altered gyrification related to increased parvalbumin-immunopositive neuron density with thickened sulcal floors
Cited by: 6
Author(s): Kazuhiko Sawada, Shiori Kamiya, Ichio Aoki
Software Mentions: 2
Published: over 5 years ago

10.15252/emmm.201607461

<scp>SPINK</scp>2 deficiency causes infertility by inducing sperm defects in heterozygotes and azoospermia in homozygotes
Cited by: 92
Author(s): Zine‐Eddine Kherraf, Marie Christou‐Kent, Thomas Karaouzène, Amir Amiri‐Yekta, Guillaume Martinez, Alexandra Vargas, Emeline Lambert, Christelle Borel, Béatrice Dorphin, Isabelle Aknin‐Seifer, Michael J. Mitchell, Catherine Metzler‐Guillemain, Jessica Escoffier, Serge Nef, Mariane Grepillat, Nicolas Thierry‐Mieg, Véronique Satre, M. Bailly, Florence Boitrelle, Karin Pernet‐Gallay, Sylviane Hennebicq, Julien Fauré, Serge P. Bottari, Charles Coutton, Pierre F. Ray, Christophe Arnoult
Software Mentions: 2
Published: over 9 years ago

10.1186/s40425-019-0673-2

Diverse immunotherapies can effectively treat syngeneic brainstem tumors in the absence of overt toxicity
Cited by: 10
Author(s): Matthew Schuelke, Phonphimon Wongthida, Jill Thompson, Timothy Kottke, Christopher B. Driscoll, Amanda L. Huff, Kevin G. Shim, Matt Coffey, José S. Pulido, Laura Evgin, Richard G. Vile
Software Mentions: 2
Published: over 7 years ago

10.15252/emmm.202013549

Flow cytometry multiplexed method for the detection of neutralizing human antibodies to the native SARS‐CoV‐2 spike protein
Cited by: 26
Author(s): Lydia Horndler, Pilar Delgado, David Abia, Ivaylo Balabanov, Pedro Martínez‐Fleta, Georgina H. Cornish, Miguel Ángel Llamas, Sergio Serrano‐Villar, Francisco Sánchez-Madrid, Manuel Fresno, Hisse M. van Santen, Balbino Alarcón
Software Mentions: 2
Published: over 5 years ago

10.1002/mgg3.495

CTC1 mutations in a Brazilian family with progeroid features and recurrent bone fractures
Cited by: 18
Author(s): Forough Sargolzaeiaval, Jiaming Zhang, Jennifer Schleit, Davor Lessel, Christian Kubisch, Débora Rossi Precioso, David Sillence, Fuki M. Hisama, Michael O. Dorschner, George M. Martin, Junko Oshima
Software Mentions: 2
Published: almost 8 years ago

10.15252/embr.201947845

Myc‐dependent endothelial proliferation is controlled by phosphotyrosine 1212 in <scp>VEGF</scp> receptor‐2
Cited by: 23
Author(s): Chiara Testini, Ross O Smith, Yi Jin, Pernilla Martinsson, Ying Sun, Mattias Hedlund, Miguel Sáinz‐Jaspeado, Masabumi Shibuya, Mats Hellström, Lena Claesson‐Welsh
Software Mentions: 2
Published: about 7 years ago

10.1038/srep10564

A sensitised RNAi screen reveals a ch-TOG genetic interaction network required for spindle assembly
Cited by: 10
Author(s): Alexis R. Barr, Chris Bakal
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.45650

Robo2 regulates synaptic oxytocin content by affecting actin dynamics
Cited by: 15
Author(s): Savani Anbalagan, Janna Blechman, Michael Gliksberg, Ludmila Gordon, Ron Rotkopf, Tali Dadosh, Eyal Shimoni, Gil Levkowitz
Software Mentions: 2
Published: over 7 years ago

10.1242/jcs.181842

Fast and precise targeting of single tumor cells in vivo by multimodal correlative microscopy
Cited by: 80
Author(s): Matthia A. Karreman, Luc Mercier, Nicole L. Schieber, Gergely Solecki, Guillaume Allio, Frank Winkler, Bernhard Ruthensteiner, Jacky G. Goetz, Yannick Schwab
Software Mentions: 2
Published: almost 12 years ago

10.1083/jcb.201903125

CDK2 regulates the NRF1/Ehmt1 axis during meiotic prophase I
Cited by: 9
Author(s): Nathan Palmer, S. Zakiah A. Talib, Chandrahas Koumar Ratnacaram, Diana Low, Xavier Bisteau, Joanna H.S. Lee, Elisabeth Pfeiffenberger, Heike Wollmann, Joel Heng Loong Tan, Sheena Wee, Radoslaw M. Sobota, Jayantha Gunaratne, Daniel M. Messerschmidt, Ernesto Guccione, Philipp Kaldis
Software Mentions: 2
Published: over 7 years ago

10.3389/fncel.2020.00108

Three-Dimensional Explant Platform for Studies on Choroid Plexus Epithelium
Cited by: 3
Author(s): Natalia Petersen, Lola Torz, Kristian H. R. Jensen, Gertrud Malene Hjortø, Katja Spieß, Mette M. Rosenkilde
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0257495

Guiding cell adhesion and motility by modulating cross-linking and topographic properties of microgel arrays
Cited by: 3
Author(s): Janine Riegert, Alexander Töpel, Jana Schieren, Renee Coryn, Stella Dibenedetto, Dominik L. Braunmiller, Kamil K Zajt, Carmen Schalla, Stephan Rütten, Martin Zenke, Andrij Pich, Antonio Sechi
Software Mentions: 2
Published: about 5 years ago

10.3389/fcimb.2018.00145

The Loss of Expression of a Single Type 3 Effector (CT622) Strongly Reduces Chlamydia trachomatis Infectivity and Growth
Cited by: 14
Author(s): Mathilde M. Cossé, Michael L. Barta, Derek J. Fisher, Lena K. Oesterlin, Béatrice Niragire, Stéphanie Perrinet, Gaël A. Millot, P. Scott Hefty, Agathe Subtil
Software Mentions: 2
Published: over 8 years ago

10.1074/jbc.RA119.012517

Phosphorylation of the overlooked tyrosine 310 regulates the structure, aggregation, and microtubule- and lipid-binding properties of Tau
Cited by: 27
Author(s): Nadine Ait-Bouziad, Anass Chiki, Galina Limorenko, Shifeng Xiao, David Eliezer, Hilal A. Lashuel
Software Mentions: 2
Published: over 6 years ago

10.3389/fcimb.2017.00475

Predictable, Tunable Protein Production in Salmonella for Studying Host-Pathogen Interactions
Cited by: 14
Author(s): Kendal G. Cooper, Audrey Chong, Tregei Starr, Ciaran E. Finn, Olivia Steele‐Mortimer
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.31807

Site-specific glycosylation regulates the form and function of the intermediate filament cytoskeleton
Cited by: 54
Author(s): Heather J Tarbet, Lee Dolat, Timothy J. Smith, Brett M Condon, E. Timothy O’Brien, Raphael H. Valdivia, Michael Boyce
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.48183

Spatiotemporal dynamics and heterogeneity of renal lymphatics in mammalian development and cystic kidney disease
Cited by: 41
Author(s): Daniyal J. Jafree, Dale Moulding, Maria Kolatsi-Joannou, Nuria Perretta Tejedor, Karen Price, Natalie J. Milmoe, Claire Walsh, Rosa Maria Correra, Paul J D Winyard, Peter C. Harris, Christiana Ruhrberg, Simon Walker‐Samuel, Paul R. Riley, Adrian S. Woolf, Peter Scambler, David A. Long
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-021-91017-5

Variability of the response of human vaginal Lactobacillus crispatus to 17β-estradiol
Cited by: 5
Author(s): Maximilien Clabaut, Amine M. Boukerb, Amine Ben Mlouka, Amandine Suet, Ali Tahrioui, Julien Verdon, Magalie Barreau, Olivier Maillot, Agathe Le Tirant, Madina Karsybayeva, Coralie Kremser, Gérard Redziniak, Cécile Duclairoir‐Poc, Chantal Pichon, Julie Hardouin, Pascal Cosette, Sylvie Chevalier, Marc Feuilloley
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-63085-6

Alpha-tocopherol exerts protective function against the mucotoxicity of particulate matter in amphibian and human goblet cells
Cited by: 5
Author(s): Hee‐Sun Yang, Hyo Jung Sim, Hanna Cho, Woo Young Bang, Ha Eun Kim, Taeg Kyu Kwon, Taejoon Kwon, Tae Joo Park
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.63291

Ablation of STAT3 in Purkinje cells reorganizes cerebellar synaptic plasticity in long-term fear memory network
Cited by: 19
Author(s): Jeong Kyu Han, Sun‐Ho Kwon, Yong Gyu Kim, Jaeyong Choi, Jong‐Il Kim, Yong-Seok Lee, Sang Kyu Ye, Sang Jeong Kim
Software Mentions: 2
Published: almost 6 years ago

10.1007/s00018-020-03750-1

HIF1α is a direct regulator of steroidogenesis in the adrenal gland
Cited by: 13
Author(s): Deepika Watts, Johanna Stein, Ana Meneses, Nicole Bechmann, Aleš Neuwirth, Denise Kaden, Anja Krüger, Anupam Sinha, Vasileia Ismini Alexaki, Luis Gustavo Pérez-Rivas, Stefan Kircher, Antoine Martinez, Marily Theodoropoulou, Graeme Eisenhofer, Mirko Peitzsch, Ali El‐Armouche, Triantafyllos Chavakis, Ben Wielockx
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41421-020-00204-7

Light-sheet fluorescence imaging charts the gastrula origin of vascular endothelial cells in early zebrafish embryos
Cited by: 11
Author(s): Meijun Pang, Linlu Bai, Weijian Zong, Xu Wang, Ye Bu, Connie Xiong, Jiyuan Zheng, Jieyi Li, Weizheng Gao, Zhiheng Feng, Liangyi Chen, Jue Zhang, Heping Cheng, Xiaojun Zhu, Jing-Wei Xiong
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2018.02409

Intestinal CD103+CD11b+ cDC2 Conventional Dendritic Cells Are Required for Primary CD4+ T and B Cell Responses to Soluble Flagellin
Cited by: 21
Author(s): Adriana Flores‐Langarica, Charlotte N. Cook, Katarzyna Müller Luda, Emma Persson, Jennifer L. Marshall, Nonantzin Beristain‐Covarrubias, Juan Carlos Yam‐Puc, Madelene W Dahlgren, Jenny Persson, Satoshi Uematsu, Shizuo Akira, Ian R. Henderson, Bengt Johansson Lindbom, William W. Agace, Adam F. Cunningham
Software Mentions: 2
Published: about 8 years ago

10.1016/j.cell.2021.01.034

Antidepressant drugs act by directly binding to TRKB neurotrophin receptors
Cited by: 275
Author(s): Plínio Casarotto, Mykhailo Girych, Senem Merve Fred, Vera Kovaleva, Rafael Moliner, Giray Enkavi, Caroline Biojone, Cecilia Cannarozzo, Madhusmita Priyadarshini Sahu, Katja Kaurinkoski, Cecilia A. Brunello, Anna Steinzeig, Frederike Winkel, Sudarshan Patil, Stefan Vestring, Tsvetan Serchov, Cassiano Ricardo Alves Faria Diniz, Liina Laukkanen, Iseline Cardon, Hanna Antila, Tomasz Róg, Petteri Piepponen, Clive R. Bramham, Claus Normann, Sari E. Lauri, Märt Saarma, Ilpo Vattulainen, Eero Ċastrén
Software Mentions: 2
Published: over 5 years ago

10.1172/jci.insight.140669

Tristetraprolin expression by keratinocytes protects against skin carcinogenesis
Cited by: 8
Author(s): Assiya Assabban, Ingrid Dubois-Vedrenne, Laurye Van Maele, Rosalba Salcedo, Brittany L. Snyder, Long Zhou, Abdulkader Azouz, Bérengère de Toeuf, Gaëlle Lapouge, Caroline La, Maxime Melchior, Muriel Nguyen, Séverine Thomas, Shu Fen Wu, Wenqian Hu, Véronique Kruys, Cédric Blanpain, Giorgio Trinchieri, Cyril Gueydan, Perry J. Blackshear, Stanislas Goriely
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82178-4

Submicron spatial resolution optical coherence tomography for visualising the 3D structures of cells cultivated in complex culture systems
Cited by: 8
Author(s): Chia‐Ying Tsai, Chia-Lung Shih, Hsiao-Sang Chu, Yi‐Ting Hsieh, Sheng‐Lung Huang, Wei-Li Chen
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers11091250

Immune Heterogeneity Between Primary Tumors and Corresponding Metastatic Lesions and Response to Platinum Therapy in Primary Ovarian Cancer
Cited by: 15
Author(s): Katharina Dötzer, Friederike Schlüter, Markus Bo Schoenberg, Alexandr V. Bazhin, Franz Edler von Koch, Andreas Schnelzer, S. Anthuber, Dieter Grab, Bastian Czogalla, Alexander Burges, Jens Werner, Sven Mahner, Barbara Mayer
Software Mentions: 2
Published: about 7 years ago

10.3389/fimmu.2017.00932

Tumor Necrosis Factor (TNF) Bioactivity at the Site of an Acute Cell-Mediated Immune Response Is Preserved in Rheumatoid Arthritis Patients Responding to Anti-TNF Therapy
Cited by: 12
Author(s): Rachel Byng-Maddick, Chris Turner, Gabriele Pollara, Matthew Ellis, Naomi Guppy, Lucy Bell, Michael R. Ehrenstein, Mahdad Noursadeghi
Software Mentions: 2
Published: about 9 years ago

10.3389/fimmu.2021.671756

The 5-Phosphatase SHIP2 Promotes Neutrophil Chemotaxis and Recruitment
Cited by: 3
Author(s): Melina Michael, Barrett L. McCormick, Karen E. Anderson, Utsa Karmakar, Matthieu Vermeren, Stéphane Schurmans, Augustin Amour, Sonja Vermeren
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-09182-5

Inflammatory cytokine-induced changes in neural network activity measured by waveform analysis of high-content calcium imaging in murine cortical neurons
Cited by: 29
Author(s): Benjamin D. Clarkson, Robert J. Kahoud, Christina B. McCarthy, Charles L. Howe
Software Mentions: 2
Published: about 9 years ago

10.1007/s00018-020-03467-1

The Rab5 activator RME-6 is required for amyloid precursor protein endocytosis depending on the YTSI motif
Cited by: 7
Author(s): Simone Eggert, Tomas Gruebl, Ritu Rajender, Carsten Rupp, Bianca Sander, Amelie Heesch, Marius Zimmermann, Sebastian Hoepfner, Hanswalter Zentgraf, Stefan Kins
Software Mentions: 2
Published: over 6 years ago

10.1186/2044-5040-2-19

Eps homology domain endosomal transport proteins differentially localize to the neuromuscular junction
Cited by: 10
Author(s): Suzanne Mate, J. H. van der Meulen, Priyanka Arya, Sohinee Bhattacharyya, Hamid Band, Eric P. Hoffman
Software Mentions: 2
Published: about 14 years ago

10.7554/eLife.00070

The activity-dependent histone variant H2BE modulates the life span of olfactory neurons
Cited by: 95
Author(s): Stephen Santoro, Catherine Dulac
Software Mentions: 2
Published: almost 14 years ago

10.1186/s13287-020-01682-y

A novel role of vitronectin in promoting survival of mesenchymal stem cells under serum deprivation stress
Cited by: 14
Author(s): Umesh Goyal, Malancha Ta
Software Mentions: 2
Published: over 6 years ago

10.1186/s12964-020-00635-5

Differential regulation of rho GTPases during lung adenocarcinoma migration and invasion reveals a novel role of the tumor suppressor StarD13 in invadopodia regulation
Cited by: 16
Author(s): Maria Al Haddad, Rayane El-Rif, Samer Hanna, Leila Jaafar, Rayane Dennaoui, Sandra Abdellatef, Veronika Miskolci, Dianne Cox, Louis Hodgson, Mirvat El‐Sibai
Software Mentions: 2
Published: about 6 years ago

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