Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: TreeToReads

https://packages.ecosyste.ms/registries/pypi.org/packages/TreeToReads

Tree to Reads - A python script to to read a tree, resolve polytomies, generate mutations and simulate NGS reads.
5 versions
Latest release: over 8 years ago
8 downloads last month

Papers Mentioning TreeToReads 3

10.7717/peerj.3893

Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance
Cited by: 49
Author(s): Ruth Timme, Hugh Rand, Martin Shumway, Eija Trees, Mustafa Simmons, Richa Agarwala, S. Scott Davis, Glenn E. Tillman, Stephanie Defibaugh-Chávez, Heather Carleton, William Klimke, Lee S. Katz
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12859-017-1592-1

TreeToReads - a pipeline for simulating raw reads from phylogenies
Cited by: 14
Author(s): Emily Jane McTavish, James B. Pettengill, Steven R. Davis, Hugh Rand, Errol Strain, Marc W. Allard, Ruth Timme
Software Mentions: 3
Published: over 7 years ago

10.1099/mgen.0.000261

Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP
Cited by: 32
Author(s): Dai Yoshimura, Rei Kajitani, Yasuhiro Gotoh, Katsuyuki Katahira, Miki Okuno, Tetsuya Hayashi, Takehiko Itoh
Software Mentions: 3
Published: over 5 years ago