Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7717/peerj.3893

https://doi.org/10.7717/peerj.3893

Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

Cited by: 49
Author(s): Ruth Timme, Hugh Rand, Martin Shumway, Eija Trees, Mustafa Simmons, Richa Agarwala, S. Scott Davis, Glenn E. Tillman, Stephanie Defibaugh-Chávez, Heather Carleton, William Klimke, Lee S. Katz
Published: almost 7 years ago

Software Mentions 5

cran: unix
POSIX System Utilities
Papers that mentioned: 27
pypi: linux

Papers that mentioned: 450
pypi: sha256sum
Compute SHA256 message digest from a file
Papers that mentioned: 1
pypi: TreeToReads
Tree to Reads - A python script to to read a tree, resolve polytomies, generate mutations and simulate NGS reads.
Papers that mentioned: 3
pypi: unix
Manage Unix-like systems.
Papers that mentioned: 27