10.3390/ijms20051098

Physiological and Transcriptome Analyses of Early Leaf Senescence for ospls1 Mutant Rice (Oryza sativa L.) during the Grain-Filling Stage
Cited by: 16
Author(s): Zhaowei Li, Xinfeng Pan, Xiaodong Guo, Kai Fan, Wenxiong Lin
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0125890

Integrating Transcriptome and Genome Re-Sequencing Data to Identify Key Genes and Mutations Affecting Chicken Eggshell Qualities
Cited by: 18
Author(s): Quan Zhang, Feng Zhu, Long Liu, Chuan Zheng, De He Wang, Zhuo Cheng Hou, Zhiliang Ning
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-017-16057-2

Genome-wide identification of long non-coding RNA genes and their association with insecticide resistance and metamorphosis in diamondback moth, Plutella xylostella
Cited by: 26
Author(s): Feiling Liu, Dan Guo, Zhuting Yuan, Chen Chen, Huamei Xiao
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-16245-0

Sublethal effects of imidacloprid on targeting muscle and ribosomal protein related genes in the honey bee Apis mellifera L.
Cited by: 30
Author(s): Yanyan Wu, Qin Luo, Chunsheng Hou, Andrew Y. Wang, Pingli Dai, Jing Gao, Yong-Jun Liu, Qingyun Diao
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20051012

Comparative Transcriptome Analysis Reveals the Transcriptional Alterations in Growth- and Development-Related Genes in Sweet Potato Plants Infected and Non-Infected by SPFMV, SPV2, and SPVG
Cited by: 11
Author(s): Jianxin Shi, Lin Zhao, Baiyuan Yan, Yongbei Zhu, Huiqin Ma, Wenyue Chen, Songlin Ruan
Software Mentions: 1
Published: over 6 years ago

10.1186/s40364-018-0151-x

Reduced nuclear DNA methylation and mitochondrial transcript changes in adenomas do not associate with mtDNA methylation
Cited by: 14
Author(s): Margaret J. Morris, Luke B. Hesson, Rebecca C. Poulos, Robyn L. Ward, Jason Wong, Neil A. Youngson
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-16543-7

Egr1 deficiency induces browning of inguinal subcutaneous white adipose tissue in mice
Cited by: 20
Author(s): Cécile Milet, Marianne Bléher, Kassandra Allbright, Mickael Orgeur, Fanny Coulpier, Delphine Duprez, Emmanuelle Havis
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-16577-x

Identification of novel factors enhancing recombinant protein production in multi-copy Komagataella phaffii based on transcriptomic analysis of overexpression effects
Cited by: 23
Author(s): Yu Xiang, Weihong Sun, Ying-Zheng Wang, Yan Xu
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-16618-5

Deleting the mouse Hsd17b1 gene results in a hypomorphic Naglu allele and a phenotype mimicking a lysosomal storage disease
Cited by: 10
Author(s): Heli Jokela, Janne Hakkarainen, Laura Kätkänaho, Pirjo Pakarinen, Suvi T. Ruohonen, Manuel Tena‐Sempere, Fuping Zhang, Matti Poutanen
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0102868

Sequence, Structural and Expression Divergence of Duplicate Genes in the Bovine Genome
Cited by: 13
Author(s): Xiaoping Liao, Hua Bao, Yan Meng, Graham Plastow, S. S. Moore, Paul Stothard
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms20061409

ATP-Binding Cassette (ABC) Transporter Genes Involved in Pyrethroid Resistance in the Malaria Vector Anopheles sinensis: Genome-Wide Identification, Characteristics, Phylogenetics, and Expression Profile
Cited by: 30
Author(s): Qianjun He, Zhen‐Tian Yan, Feng‐Ling Si, Yong Zhou, Wenbo Fu, Bin Chen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0200663

Persistent expression of Cotesia plutellae bracovirus genes in parasitized host, Plutella xylostella
Cited by: 0
Author(s): Yonggyun Kim, Sunil Kumar
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20081982

Comparative Transcriptome Analysis of Developing Seeds and Silique Wall Reveals Dynamic Transcription Networks for Effective Oil Production in Brassica napus L.
Cited by: 36
Author(s): Muhammad Shahid, Guangqin Cai, Feng Zhang, Qing Zhao, Muhammad Uzair Qasim, Yueyun Hong, Chuchuan Fan, Yongming Zhou
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20092235

Nitrate Reductase-Mediated Nitric Oxide Regulates the Leaf Shape in Arabidopsis by Mediating the Homeostasis of Reactive Oxygen Species
Cited by: 18
Author(s): Qiaona Pan, Chen-Chen Geng, Dandan Li, Shiwen Xu, Dandan Mao, Saima Umbreen, Gary J. Loake, Beimi Cui
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0127755

In Vitro Model for Studying Esophageal Epithelial Differentiation and Allergic Inflammatory Responses Identifies Keratin Involvement in Eosinophilic Esophagitis
Cited by: 39
Author(s): Kiran Kc, Marc E. Rothenberg, Joseph D. Sherrill
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-017-17597-3

The AP-1 transcription factor JunB is required for Th17 cell differentiation
Cited by: 44
Author(s): Soh Yamazaki, Yoshihiko Tanaka, Hiromitsu Araki, Akira Kohda, Fumiyuki Sanematsu, Tomoko Arasaki, Xuefeng Duan, Fumihito Miura, Takamasa Katagiri, Ryodai Shindo, Hiroyasu Nakano, Takashi Ito, Yoshihiro Fukui, Shogo Endo, Hideki Sumimoto
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-17045-2

Biochemical and transcriptomic analyses of drought stress responses of LY1306 tobacco strain
Cited by: 25
Author(s): Huijuan Yang, Li Zhao, Shimin Zhao, Jing Wang, Hongzhi Shi
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20102394

Identification and Characterization of Novel Fusion Genes with Potential Clinical Applications in Mexican Children with Acute Lymphoblastic Leukemia
Cited by: 12
Author(s): Minerva Mata-Rocha, Angélica Rangel-López, Elva Jiménez‐Hernández, Blanca Angélica Morales-Castillo, Carolina González-Torres, Javier Gaytán-Cervantes, Enrique Álvarez-Olmos, Juan Carlos Núñez-Enríquez, Arturo Fajardo-Gutiérrez, Jorge Alfonso Martín-Trejo, Karina Anastacia Solís-Labastida, Aurora Medina-Sansón, Janet Flores-Lujano, Omar Alejandro Sepúlveda-Robles, José Gabriel Peñaloza-González, Laura Eugenia Espinoza-Hernández, Nora Nancy Núñez-Villegas, Rosa Martha Espinosa-Elizondo, Beatriz Cortés-Herrera, José Refugio Torres-Nava, Luz Victoria Flores-Villegas, Laura Elizabeth Merino-Pasaye, Carolina Bekker-Méndez, Martha Margarita Velázquez-Aviña, María Luisa Pérez-Saldivar, Benito Alejandro Bautista-Martínez, Raquel Amador-Sánchez, Ana Itamar González‐Ávila, Silvia Jiménez-Morales, David Aldebarán Duarte-Rodríguez, Jessica Denisse Santillán-Juárez, Alejandra Jimena García-Velázquez, Haydeé Rosas-Vargas, Juan Manuel Mejı́a-Aranguré
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-017-18064-9

Transcriptomic analysis of mitochondrial TFAM depletion changing cell morphology and proliferation
Cited by: 27
Author(s): Woo Rin Lee, Heeju Na, Seon-Woo Lee, Won-Jun Lim, Namshin Kim, J. Eugene Lee, Changwon Kang
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0085284

Deep Sequencing–Based Transcriptome Profiling Reveals Comprehensive Insights into the Responses of Nicotiana benthamiana to Beet necrotic yellow vein virus Infections Containing or Lacking RNA4
Cited by: 24
Author(s): Haojun Fan, Haiwen Sun, Ying Wang, Yong Liang Zhang, Xianbing Wang, Dawei Li, Jialin Yu, Chenggui Han
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-017-18389-5

RNA-Seq reveals seven promising candidate genes affecting the proportion of thick egg albumen in layer-type chickens
Cited by: 15
Author(s): Yi Wan, Sihua Jin, Chendong Ma, Zhicheng Wang, Qi Fang, Runshen Jiang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-18352-4

Alternative dominance of the parental genomes in hybrid cells generated through the fusion of mouse embryonic stem cells with fibroblasts
Cited by: 6
Author(s): N. M. Matveeva, Veniamin Fishman, И. С. Захарова, Alexander I. Shevchenko, Inna E. Pristyazhnyuk, А. Г. Мензоров, O. L. Serov
Software Mentions: 1
Published: over 7 years ago

10.1098/rsob.180029

Cultured cells and wing disc size of silkworm can be controlled by the Hippo pathway
Cited by: 9
Author(s): Zi Liang, Yingjie Lu, Ying Qian, Liyuan Zhu, Sulan Kuang, Fei Chen, Yongjie Feng, Xiaolong Hu, Guangwen Cao, Renyu Xue, Chengliang Gong
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-18850-5

Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes
Cited by: 57
Author(s): Qari Muhammad Imran, Adil Hussain, Sang Uk Lee, Bong-Gyu Mun, Noreen Falak, Gary J. Loake, Byung‐Wook Yun
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0249663

The transcriptomic response to heat stress of a jujube (Ziziphus jujuba Mill.) cultivar is featured with changed expression of long noncoding RNAs
Cited by: 3
Author(s): Qing Hao, Lei Yang, Dingyu Fan, Bin Zeng, Juan Jin
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0099625

RNA-Seq Transcriptome Profiling Identifies CRISPLD2 as a Glucocorticoid Responsive Gene that Modulates Cytokine Function in Airway Smooth Muscle Cells
Cited by: 127
Author(s): Blanca E. Himes, Xiaofeng Jiang, Peter J. Wagner, Ruoxi Hu, Qiyu Wang, Barbara J. Klanderman, Reid M. Whitaker, Qingling Duan, Jessica Lasky‐Su, Christina Nikolos, William F. Jester, Martin Johnson, Reynold A. Panettieri, Kelan G. Tantisira, Scott T. Weiss, Quan Lu
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-017-19114-y

Efficient differentiation of human pluripotent stem cells into skeletal muscle cells by combining RNA-based MYOD1-expression and POU5F1-silencing
Cited by: 24
Author(s): Tasuku Akiyama, Saeko Sato, Nana Chikazawa-Nohtomi, Atsumi Soma, Hiromi Kimura, Shokichi Wakabayashi, Shigeru B. H. Ko, Minoru S.H. Ko
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-19950-6

Transcriptional profiling of long non-coding RNAs in mantle of Crassostrea gigas and their association with shell pigmentation
Cited by: 48
Author(s): Dandan Feng, Qi Li, Hong Yu, Lingfeng Kong, Shao Jun Du
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0148940

Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout
Cited by: 74
Author(s): Rafet Al-Tobasei, Bam Paneru, Mohamed Salem
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pntd.0006026

RNA-seq transcriptional profiling of Leishmania amazonensis reveals an arginase-dependent gene expression regulation
Cited by: 27
Author(s): Juliana Ide Aoki, Sandra Márcia Muxel, Ricardo Andrade Zampieri, Maria Fernanda Laranjeira-Silva, Karl Erik Müller, Audun Helge Nerland, Lucile Maria Floeter‐Winter
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pntd.0001854

RNAseq Analysis of the Parasitic Nematode Strongyloides stercoralis Reveals Divergent Regulation of Canonical Dauer Pathways
Cited by: 77
Author(s): Jonathan D. Stoltzfus, Samuel S. Minot, Matthew Berriman, Thomas J. Nolan, James B. Lok
Software Mentions: 1
Published: almost 13 years ago

10.1038/s41598-018-20435-9

Analysis combining correlated glaucoma traits identifies five new risk loci for open-angle glaucoma
Cited by: 30
Author(s): Puya Gharahkhani, Kathryn P. Burdon, Jessica N. Cooke Bailey, Alex W. Hewitt, Matthew Law, Louis R. Pasquale, Jae H. Kang, Jonathan L. Haines, Emmanuelle Souzeau, Tiger Zhou, Owen M. Siggs, John Landers, Mona S Awadalla, Shilpi Sharma, Richard A. Mills, Bronwyn Ridge, David J. Lynn, Robert J. Casson, Stuart Graham, Ivan Goldberg, Andrew White, Paul R. Healey, John Grigg, Mitchell Lawlor, Paul Mitchell, Jonathan B Ruddle, Michael Coote, Mark J Walland, Stephen Best, Andrea L. Vincent, Jesse Gale, Graham Radford‐Smith, David C. Whiteman, Grant W. Montgomery, Nicholas G. Martin, David A. Mackey, Janey L. Wiggs, Stuart MacGregor, Jamie E Craig, R. Rand Allingham, Murray H. Brilliant, Donald L. Budenz, John H. Fingert, Douglas E. Gaasterland, Teresa Gaasterland, Lisa A Hark, Michael A. Hauser, Robert P. Igo, Peter Kraft, Richard K. Lee, Paul R. Lichter, Yutao Liu, Sayoko E. Moroi, Margaret A. Pericak‐Vance, Anthony Realini, Doug Rhee, Julia E. Richards, Robert Ritch, Joel S. Schuman, William K. Scott, Kuldev Singh, Arthur J. Sit, Douglas Vollrath, Gadi Wollstein, Donald J. Zack
Software Mentions: 1
Published: over 7 years ago

10.1186/s13068-019-1596-3

Lignin degradation potential and draft genome sequence of Trametes trogii S0301
Cited by: 15
Author(s): Yuan Liu, Yuanyuan Wu, Yu Zhang, Xulei Yang, En Yang, Huini Xu, Qin Yang, Chagan Irbis, Xiuming Cui, Weimin Chen, Jinping Yan
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20122929

Next-Generation Sequencing in Acute Lymphoblastic Leukemia
Cited by: 55
Author(s): Nicoletta Coccaro, Luisa Anelli, Antonella Zagaria, Giorgina Specchia, Francesco Albano
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pntd.0005273

Transcriptome Sequencing Reveals Large-Scale Changes in Axenic Aedes aegypti Larvae
Cited by: 49
Author(s): Kevin J. Vogel, Luca Valzania, Kerri L. Coon, Mark R. Brown, Michael R. Strand
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-21835-7

HDAC4 regulates satellite cell proliferation and differentiation by targeting P21 and Sharp1 genes
Cited by: 33
Author(s): Nicoletta Marroncelli, Marzia Bianchi, Marco Bertin, Silvia Consalvi, Valentina Saccone, Marco De Bardi, Pier Lorenzo Puri, Daniela Palacios, Sergio Adamo, Viviana Moresi
Software Mentions: 1
Published: over 7 years ago

10.3390/biology10040343

Identification of Differential N-Glycan Compositions in the Serum and Tissue of Colon Cancer Patients by Mass Spectrometry
Cited by: 10
Author(s): Marcelo de Melo Andrade Coura, Éder Alves Barbosa, Guilherme D. Brand, Carlos Bloch, João Batista de Sousa
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pntd.0005313

Comparative and functional triatomine genomics reveals reductions and expansions in insecticide resistance-related gene families
Cited by: 43
Author(s): Lucila Traverso, Andrés Lavore, Ivana Sierra, Victorio Palacio, Jesús Martínez-Barnetche, José Manuel Latorre-Estivalis, Gastón Mougabure‐Cueto, Flavio Francini, Marcelo G. Lorenzo, Mario H. Rodrı́guez, Sheila Ons, Rolando Rivera‐Pomar
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-19564-y

Thyroid Dysfunction, Neurological Disorder and Immunosuppression as the Consequences of Long-term Combined Stress
Cited by: 8
Author(s): Jingping Zhang, Jingjing Huang, Kasimujiang Aximujiang, Chao-Jiang Xu, Abulaiti Ahemaiti, Guangxin Wu, Li Zhong, Kurexi Yunusi
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pntd.0006025

L-arginine availability and arginase activity: Characterization of amino acid permease 3 in Leishmania amazonensis
Cited by: 28
Author(s): Juliana Ide Aoki, Sandra Márcia Muxel, Ricardo Andrade Zampieri, Stephanie Maia Acuña, Juliane Cristina Ribeiro Fernandes, Rubia Heloisa Vanderlinde, Maria Carmen Oliveira de Pinho Sales, Lucile Maria Floeter‐Winter
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-24039-1

A Multi-Parameter Analysis of Cellular Coordination of Major Transcriptome Regulation Mechanisms
Cited by: 7
Author(s): Wen Jiang, Zhanyong Guo, Nuno Lages, W. Jim Zheng, Denis Féliers, Fangyuan Zhang, Degeng Wang
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pntd.0002091

Comparative Study of Transcriptome Profiles of Mechanical- and Skin-Transformed Schistosoma mansoni Schistosomula
Cited by: 50
Author(s): Anna V. Protasio, David W. Dunne, Matthew Berriman
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-018-24813-1

Transcriptomic analysis of the liver of cholesterol-fed rabbits reveals altered hepatic lipid metabolism and inflammatory response
Cited by: 12
Author(s): Weirong Wang, Yulong Chen, Liang Bai, Zhao Song, Rong Wang, Baoning Liu, Yali Zhang, Jianglin Fan, Enqi Liu
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-24903-0

JIB-04, A Small Molecule Histone Demethylase Inhibitor, Selectively Targets Colorectal Cancer Stem Cells by Inhibiting the Wnt/β-Catenin Signaling Pathway
Cited by: 43
Author(s): Min Seong Kim, Hye In Cho, Hee Jung Yoon, Yeong Hee Ahn, Eun Jung Park, Yan Jin, Yong Suk Jang
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pntd.0002467

Proteomic Analysis of the Excretory-Secretory Products from Larval Stages of Ascaris suum Reveals High Abundance of Glycosyl Hydrolases
Cited by: 56
Author(s): Tao Wang, Katleen Van Steendam, Maarten Dhaenens, Johnny Vlaminck, Dieter Deforce, Aaron R. Jex, Robin B. Gasser, Peter Geldhof
Software Mentions: 1
Published: almost 12 years ago

10.3390/ijms20174303

Transcriptome Analysis Reveals Key Seed-Development Genes in Common Buckwheat (Fagopyrum esculentum)
Cited by: 15
Author(s): Hongyou Li, Qiuyu Lv, Jiao Deng, Juan Huang, Fang Cai, Chenggang Liang, Qijiao Chen, Yan Wang, Lingjun Zhu, Xiaona Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pmed.1001888

P2RX7 Purinoceptor: A Therapeutic Target for Ameliorating the Symptoms of Duchenne Muscular Dystrophy
Cited by: 50
Author(s): Anthony Sinadinos, Chris Young, Rasha Al-Khalidi, Anna Teti, Paweł Kaliński, Shafini Mohamad, Léonore Floriot, Tiphaine Henry, Gianluca Tozzi, Taiwen Jiang, Olivier Wurtz, Alexis Lefebvre, Mikhail Shugay, Jie Tong, David Vaudry, S. Arkle, Jean-Claude do-Rego, Dariusz C. Górecki
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms20174099

Transcriptome Profiling of Placenta through Pregnancy Reveals Dysregulation of Bile Acids Transport and Detoxification Function
Cited by: 6
Author(s): Peng Wang, Yumo Song, Heju Zhong, Sen Lin, Xiaoling Zhang, Jian Li, Lianqiang Che, Bin Feng, Yan Lin, De Wu, Douglas G. Burrin, Zhengfeng Fang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-25743-8

Integrated analysis of hepatic mRNA and miRNA profiles identified molecular networks and potential biomarkers of NAFLD
Cited by: 26
Author(s): Meizhen Zhu, Qianlei Wang, Wenjun Zhou, Tao Liu, Lili Yang, Peiyong Zheng, Li Zhang, Guang Ji
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pgen.1006931

Dynamic hyper-editing underlies temperature adaptation in Drosophila
Cited by: 48
Author(s): Ilana Buchumenski, Osnat Bartok, Reut Ashwal-Fluss, Varun Pandey, Hagit T. Porath, Erez Y. Levanon, Sebastián Kadener
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-26499-x

Toxicity and Transcriptome Sequencing (RNA-seq) Analyses of Adult Zebrafish in Response to Exposure Carboxymethyl Cellulose Stabilized Iron Sulfide Nanoparticles
Cited by: 35
Author(s): Min Zheng, Jianguo Lü, Dongye Zhao
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-26753-2

Crosstalk among lncRNAs, microRNAs and mRNAs in the muscle ‘degradome’ of rainbow trout
Cited by: 34
Author(s): Bam Paneru, Ali R. Ali, Rafet Al-Tobasei, Brett Kenney, Mohamed Salem
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-26084-2

Ameliorative effect of Sedum sarmentosum Bunge extract on Tilapia fatty liver via the PPAR and P53 signaling pathway
Cited by: 20
Author(s): Lida Huang, Yuan Cheng, Kai Huang, Yu Zhou, Yanqun Ma, Mengci Zhang
Software Mentions: 1
Published: about 7 years ago

10.1186/s13068-016-0546-6

The sorghum SWEET gene family: stem sucrose accumulation as revealed through transcriptome profiling
Cited by: 91
Author(s): Hiroshi Mizuno, Shigemitsu Kasuga, Hiroyuki Kawahigashi
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pgen.1009402

NCK-associated protein 1 like (nckap1l) minor splice variant regulates intrahepatic biliary network morphogenesis
Cited by: 3
Author(s): Kimia Ghaffari, Lain X. Pierce, Maria Roufaeil, Isabel Gibson, Kevin Tae, Saswat Sahoo, James R. Cantrell, Olov Andersson, Jasmine Lau, Takuya Sakaguchi
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pgen.1004235

A Central Role for GRB10 in Regulation of Islet Function in Man
Cited by: 157
Author(s): Inga Prokopenko, Wenny Poon, Reedik Mägi, Rashmi B. Prasad, Albert Salehi, Peter Almgren, Peter Osmark, Nabila Bouatia-Naji, Nils Wierup, Tove Fall, Alena Stančáková, Adam Barker, Vasiliki Lagou, Clive Osmond, Wenting Xie, Jari Lahti, Anne Jackson, Yufeng Cheng, Jie Liu, Jeffrey R. O’Connell, Paul Blomstedt, João Fadista, Sami Alkayyali, Tasnim Dayeh, Emma Ahlqvist, Jalal Taneera, Cécile Lecœur, Ashish Kumar, Ola Hansson, Karin Hansson, Benjamin F. Voight, Hyun Min Kang, Claire Lévy-Marchal, Vincent Vatin, Aarno Palotie, Ann Christine Syvänen, Andrea Mari, Michael N. Weedon, Ruth J.F. Loos, Ken K. Ong, Peter M. Nilsson, Bo Isomaa, Tiinamaija Tuomi, Nicholas J. Wareham, Michael Stümvoll, Elisabeth Widén, Timo A. Lakka, Claudia Langenberg, Anke Tönjes, Rainer Rauramaa, Johanna Kuusisto, Timothy M. Frayling, Philippe Froguel, Mark Walker, Johan G. Eriksson, Charlotte Ling, Peter Kovacs, Erik Ingelsson, Mark I. McCarthy, Alan R. Shuldiner, Kristi Silver, Markku Laakso, Leif Groop, Valeriya Lyssenko
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-018-27220-8

Suppression of mitochondrial oxygen metabolism mediated by the transcription factor HIF-1 alleviates propofol-induced cell toxicity
Cited by: 21
Author(s): Chisato Sumi, Akihisa Okamoto, Hiromasa Tanaka, Munenori Kusunoki, Tomohiro Shoji, Takeo Uba, Takehiko Adachi, Teppei Iwai, Kenichiro Nishi, Hiroshi Harada, Hidemasa Bono, Yoshiyuki Matsuo, Kiichi Hirota
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20184330

Systematic Identification of Characteristic Genes of Ovarian Clear Cell Carcinoma Compared with High-Grade Serous Carcinoma Based on RNA-Sequencing
Cited by: 16
Author(s): Saya Nagasawa, Kazuhiro Ikeda, Kuniko Horie‐Inoue, Shigeo Sato, Atsuo Itakura, Satoru Takeda, Kosei Hasegawa, Satoshi Inoue
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-27050-8

Intraflagellar transport 46 (IFT46) is essential for trafficking IFT proteins between cilia and cytoplasm in Paramecium
Cited by: 10
Author(s): Lei Shi, Xuefei Shi, Yuan Shen
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-27664-y

Integrated microRNA and mRNA expression profiling reveals a complex network regulating pomegranate (Punica granatum L.) seed hardness
Cited by: 19
Author(s): Xiang Luo, Da Cao, Jianfeng Zhang, Li Chen, Xiaocong Xia, Haoxian Li, Dan Zhao, Fuhong Zhang, Hui Xue, Lina Chen, Yongzhou Li, Shangyin Cao
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-27826-y

Exon Junction Complexes can have distinct functional flavours to regulate specific splicing events
Cited by: 26
Author(s): Zhen Wang, Lionel Ballut, Isabelle Barbosa, Hervé Le Hir
Software Mentions: 1
Published: about 7 years ago

10.1098/rsbl.2016.0914

High-protein paternal diet confers an advantage to sons in sperm competition
Cited by: 20
Author(s): Felix Zajitschek, Susanne Zajitschek, Mollie K. Manier
Software Mentions: 1
Published: over 8 years ago

10.3390/biology10060559

Transcriptomic Responses Induced in Muscle and Adipose Tissues of Growing Pigs by Intravenous Infusion of Sodium Butyrate
Cited by: 4
Author(s): He Zhang, Erdu Ren, Rongying Xu, Yong Su
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pgen.1006106

Dynamics of Chloroplast Translation during Chloroplast Differentiation in Maize
Cited by: 91
Author(s): Prakitchai Chotewutmontri, Alice Barkan
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-018-28371-4

Eosinophils support adipocyte maturation and promote glucose tolerance in obesity
Cited by: 54
Author(s): Eun Hui Lee, Michal Itan, Jae‐Dong Jang, Hyeon-Jung Gu, Perri Rozenberg, Melissa K. Mingler, Ting Wen, Ji-Young Yoon, Shi-Young Park, Joo Young Roh, Cheol Soo Choi, Woo‐Jae Park, Ariel Munitz, YunJae Jung
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-28509-4

Gene expression profile in peripheral blood mononuclear cells of postpartum depression patients
Cited by: 17
Author(s): Danqing Pan, Yang Xu, Lei Zhang, Su Qizhu, Manman Chen, Bing Li, Qian Xiao, Qi Gao, Xinjun Peng, Binfei Jiang, Yuqing Gu, Ying Du, Pengfei Gao
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20204973

Genome-Wide Analysis of Carboxylesterases (COEs) in the Whitefly, Bemisia tabaci (Gennadius)
Cited by: 10
Author(s): Jixing Xia, Haifeng Xu, Zezhong Yang, Huipeng Pan, Xin Yang, Zhixin Guo, Yang Fang, Long Guo, Xiaodong Sun, Shaoli Wang, Qingjun Wu, Wen Xie, Youjun Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1186/1745-6150-8-16

RNaseIII and T4 Polynucleotide Kinase sequence biases and solutions during RNA-seq library construction
Cited by: 16
Author(s): Changhoon Lee, R. Adron Harris, Jason K. Wall, Claus O. Wilke
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-018-27820-4

Transcriptional profiling and genes involved in acquired thermotolerance in Banana: a non-model crop
Cited by: 14
Author(s): S. M. Vidya, Himansu Kumar, R. M. Bhatt, R. H. Laxman, K. V. Ravishankar
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-27643-3

The lincRNA MIRAT binds to IQGAP1 and modulates the MAPK pathway in NRAS mutant melanoma
Cited by: 18
Author(s): Martina Sanlorenzo, Igor Vujic, Rosaura Esteve-Puig, Kevin Lai, Marin Vujic, Kevin Lin, Christian Posch, Michelle Dimon, Adrian Moy, Mitchell Zekhtser, Katia Johnston, Deborah Gho, Won‐Kyung Ho, Abhinay Gajjala, Juan Oses Prieto, Alma L. Burlingame, Adil Daud, Klemens Rappersberger, Susana Ortiz‐Urda
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-29278-w

Temporal analysis of Arabidopsis genes activated by Eucalyptus grandis NAC transcription factors associated with xylem fibre and vessel development
Cited by: 14
Author(s): Maritz Laubscher, Katrien Brown, Libert Brice Tonfack, Alexander Andrew Myburg, Eshchar Mizrachi, Steven G. Hussey
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-29365-y

Integrated mRNA, sRNA, and degradome sequencing reveal oilseed rape complex responses to Sclerotinia sclerotiorum (Lib.) infection
Cited by: 15
Author(s): Hongju Jian, Jinqi Ma, Lijuan Wei, Aoxiang Zhang, Bo Yang, Jiana Li, Xinhua Xu, Liezhao Liu
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.26177

Mutant TP53 modulates metastasis of triple negative breast cancer through adenosine A2b receptor signaling
Cited by: 12
Author(s): Eisuke Horigome, Michiru Fujieda, Tadashi Handa, Ayaka Katayama, Masashi Ito, Ami Ichihara, Daiki Tanaka, Navchaa Gombodorj, Shinji Yoshiyama, Arito Yamane, Keiichi Yamada, Jun Horiguchi, Kazuo Shinozuka, Tetsunari Oyama, Masahiko Nishiyama, Susumu Rokudai
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20225603

RNA-Seq-Based Comparative Transcriptome Analysis Highlights New Features of the Heat-Stress Response in the Extremophilic Bacterium Deinococcus radiodurans
Cited by: 3
Author(s): Xue Dong, Wenzheng Liu, Yun Chen, Yingying Liu, Jiahui Han, Xiuxiu Geng, Li Jiang, Shijie Jiang, Zhengfu Zhou, Wei Zhang, Ming Chen, Min Lin, Marc Ongena, Jin Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/1754-6834-6-96

Investigating host dependence of xylose utilization in recombinant Saccharomyces cerevisiae strains using RNA-seq analysis
Cited by: 25
Author(s): Xueyang Feng, Huimin Zhao
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1004159

Sex-Specific Embryonic Gene Expression in Species with Newly Evolved Sex Chromosomes
Cited by: 25
Author(s): Susan E. Lott, Jacqueline E. Villalta, Qi Zhou, Doris Bachtrog, Michael B. Eisen
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-018-30451-4

Mechanisms of wheat (Triticum aestivum) grain storage proteins in response to nitrogen application and its impacts on processing quality
Cited by: 31
Author(s): Ting Zheng, Pengfei Qi, Yong-Li Cao, Yanan Han, Hongling Ma, Zhen-Ru Guo, Yan Wang, Yu Qiao, Shi-Yu Hua, Haiyue Yu, Wang Jiang-ping, Jing Zhu, Cai-Yi Zhou, Yazhou Zhang, Qing Chen, Li Kong, Jirui Wang, Qiantao Jiang, Zehong Yan, Xiujin Lan, Guoquan Fan, Yuming Wei, Youliang Zheng
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-29812-w

Resistance to retinopathy development in obese, diabetic and hypertensive ZSF1 rats: an exciting model to identify protective genes
Cited by: 3
Author(s): Vincenza Caolo, Quentin Roblain, J Lecomte, Paolo Carai, Linsey J. F. Peters, Ilona Cuijpers, Emma Robinson, Kasper Derks, Jurgen Sergeys, Agnès Noël, Elizabeth A. V. Jones, Lieve Moons, Stéphane Heymans
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20225676

Genome-Wide Characterization, Expression Profile Analysis of WRKY Family Genes in Santalum album and Functional Identification of Their Role in Abiotic Stress
Cited by: 26
Author(s): Haifeng Yan, Mingzhi Li, Yan Xiong, Jianming Wu, Jaime A. Teixeira da Silva, Guohua Ma
Software Mentions: 1
Published: over 5 years ago

10.1186/s13068-018-1303-9

Dye-decolorizing peroxidases in Irpex lacteus combining the catalytic properties of heme peroxidases and laccase play important roles in ligninolytic system
Cited by: 29
Author(s): Xing Qin, Huiying Luo, Xiaoyu Zhang, Bin Yao, Fuying Ma, Xiaoyun Su
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20225530

Transcriptome Analysis Implicates Involvement of Long Noncoding RNAs in Cytoplasmic Male Sterility and Fertility Restoration in Cotton
Cited by: 10
Author(s): Bingbing Zhang, Xuexian Zhang, Meng Zhang, Liping Guo, Ting Qi, Hailin Wang, Huini Tang, Xin Qiao, Kashif Shahzad, Chaozhu Xing, Jianyong Wu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1007208

A molecular basis behind heterophylly in an amphibious plant, Ranunculus trichophyllus
Cited by: 34
Author(s): Juhyun Kim, Youngsung Joo, Jinseul Kyung, Minu Jeon, Jong Yoon Park, Ho Gyun Lee, Doo Soo Chung, Eun‐Ju Lee, Ilha Lee
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-31594-0

Safety and Optimization of Metabolic Labeling of Endothelial Progenitor Cells for Tracking
Cited by: 19
Author(s): Sangsoo Han, Hye-Eun Shim, Soon‐Jung Park, Byoung-Chul Kim, Dong‐Eun Lee, Hyung-Min Chung, Sung-Hwan Moon, Sun-Woong Kang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-31301-z

Transcriptome sequencing reveals key potential long non-coding RNAs related to duration of fertility trait in the uterovaginal junction of egg-laying hens
Cited by: 13
Author(s): Adeyinka Abiola Adetula, Lantao Gu, Chinedu Charles Nwafor, Xiaoyong Du, Shuhong Zhao, Shijun Li
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13023-016-0439-6

Complex translocation disrupting TCF4 and altering TCF4 isoform expression segregates as mild autosomal dominant intellectual disability
Cited by: 23
Author(s): Valerie V. Maduro, Barbara N. Pusey, Praveen F. Cherukuri, Paul Atkins, Christèle du Souich, Rosemarie Rupps, Marjolaine M. Limbos, David R. Adams, Samarth Bhatt, Patrice Eydoux, Amanda Links, Anna Lehman, May Christine V. Malicdan, Christopher E. Mason, Marie Morimoto, James C. Mullikin, Andrew Sear, Clara van Karnebeek, Paweł Stankiewicz, William A. Gahl, Camilo Toro, Cornelius F. Boerkoel
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-018-31919-z

Combined small RNA and gene expression analysis revealed roles of miRNAs in maize response to rice black-streaked dwarf virus infection
Cited by: 18
Author(s): Aiqin Li, Guanghui Li, Yuhan Zhao, Meng Zhao, Meng Zhao, Changsheng Li, Ye Zhang, Pengcheng Li, Changle Ma, Han Xia, Shuzhen Zhao, Lei Hou, Chuanzhi Zhao, Xingjun Wang
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20235949

Identification of Flower-Specific Promoters through Comparative Transcriptome Analysis in Brassica napus
Cited by: 13
Author(s): Yan Li, Caihua Dong, Ming Hu, Zetao Bai, Chaobo Tong, Rong Zuo, Yueying Liu, Xiaohui Cheng, Ming Huei Cheng, Junyan Huang, Liu S
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1003116

Systematic Identification of Rhythmic Genes Reveals camk1gb as a New Element in the Circadian Clockwork
Cited by: 39
Author(s): Adi Tovin, Shahar Alon, Zohar Ben-Moshe, Philipp Mracek, Gad D. Vatine, Nicholas S. Foulkes, Jasmine Jacob‐Hirsch, Gideon Rechavi, Reiko Toyama, Steven L. Coon, David C. Klein, Eli Eisenberg, Yoav Gothilf
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-018-32632-7

Transcriptomic insights into the blue light-induced female floral sex expression in cucumber (Cucumis sativus L.)
Cited by: 10
Author(s): Yong Zhou, Golam Jalal Ahammed, Qiang Wang, Chaoqun Wu, Chunpeng Wan, Youxin Yang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-32729-z

Polycomb Repressive Complex 2 is essential for development and maintenance of a functional TEC compartment
Cited by: 4
Author(s): Nandini Singarapu, Ke-Yue Ma, Kaitlin Reeh, Jianjun Shen, Jessica N. Lancaster, S. Stephen Yi, Huafeng Xie, Stuart H. Orkin, Nancy R. Manley, Lauren I.R. Ehrlich, Ning Jiang, Ellen R. Richie
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1003611

Histone Modifications Are Associated with Transcript Isoform Diversity in Normal and Cancer Cells
Cited by: 23
Author(s): Ondřej Podlaha, Subhajyoti De, Mithat Gönen, Franziska Michor
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pcbi.1002917

The Vast, Conserved Mammalian lincRNome
Cited by: 50
Author(s): David Managadze, Alexander E. Lobkovsky, Yuri I. Wolf, Svetlana A. Shabalina, Igor B. Rogozin, Eugene V. Koonin
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pcbi.1007344

Systematically understanding the immunity leading to CRPC progression
Cited by: 23
Author(s): Ji Z, Weiling Zhao, Hui-Kuan Lin, Xiaobo Zhou
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-33204-5

Transcriptomic analysis reveals a controlling mechanism for NLRP3 and IL-17A in dextran sulfate sodium (DSS)-induced colitis
Cited by: 15
Author(s): Ting-Yun Lin, Shu‐Yi Yin, Pei-Wen Hsiao, Ning‐Sun Yang, I-Jen Wang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-33407-w

Effects of dietary protein restriction followed by realimentation on growth performance and liver transcriptome alterations of lamb
Cited by: 12
Author(s): Kai Cui, B. Wang, Ma T, B. W., Naifeng Zhang, Yan Tu, Qiyu Diao
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20236070

Integrated Methylome and Transcriptome Analysis between the CMS-D2 Line ZBA and Its Maintainer Line ZB in Upland Cotton
Cited by: 14
Author(s): Meng Zhang, Liping Guo, Ting Qi, Xuexian Zhang, Huini Tang, Hailin Wang, Xin Qiao, Bingbing Zhang, Juanjuan Feng, Zhidan Zuo, Ting Li, Kashif Shahzad, Jianyong Wu, Chaozhu Xing
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1004465

Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis
Cited by: 15
Author(s): Wei Zhang, Ju Young Chang, Liangyu Lin, Kay Minn, Baolin Wu, Jeremy Chien, Jeongsik Yong, Hui Zheng, Rui Kuang
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms20235863

Genome-Wide Analysis of the YABBY Transcription Factor Family in Pineapple and Functional Identification of AcYABBY4 Involvement in Salt Stress
Cited by: 29
Author(s): Zeyun Li, Gang Li, Mingxing Cai, S. V. G. N. Priyadarshani, Mohammad Aslam, Qiao Zhou, Xuena Huang, Xiaomei Wang, Yeqiang Liu, Yuan Qin
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1003737

A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler) for Next-Generation Sequencing Data
Cited by: 29
Author(s): Yuan Zhang, Yanni Sun, James R. Cole
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-018-33891-0

Identification of Differentially Expressed Non-coding RNA in Porcine Alveolar Macrophages from Tongcheng and Large White Pigs Responded to PRRSV
Cited by: 19
Author(s): Yueran Zhen, Fengqing Wang, Wan Liang, Jianjian Liu, Guangzhen Gao, Yan Wang, Xuewen Xu, Qiuju Su, Qingde Zhang, Bang Liu
Software Mentions: 1
Published: almost 7 years ago