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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: pypi: TETyper

https://packages.ecosyste.ms/registries/pypi.org/packages/TETyper

transposable element typing pipeline
2 versions
Latest release: almost 7 years ago
4 downloads last month

Enhanced Analysis
Educational Contributors: [email protected]
Repository Activity:
README Analysis: DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +20 Educational commit emails
    1 contributors with educational email addresses
  • +4 Science terms in README
    2 scientific terms found in README
  • +10 DOI references
    1 DOI references found in README
  • +6 Academic links
    1 academic links found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
  • -10 No science terms in description
    No scientific terms found in description
Very Likely Science (100)

Papers Mentioning TETyper 6

10.1186/s13073-020-00825-3
Mode and dynamics of vanA-type vancomycin resistance dissemination in Dutch hospitals
Cited by: 15
Author(s): Sergio Arredondo-Alonso, Janetta Top, Jukka Corander, Rob J. L. Willems, Anita C. Schürch
Software Mentions: 6
Published: over 4 years ago
10.1073/pnas.2003407117
Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among <i>Klebsiella pneumoniae</i>
Cited by: 76
Author(s): Sophia David, Victoria Cohen, Sandra Reuter, Anna E. Sheppard, Tommaso Giani, Julian Parkhill, Gian María Rossolini, Edward J. Feil, Hajo Grundmann, David M. Aanensen
Software Mentions: 4
Published: almost 5 years ago
10.1128/AAC.02513-18
<i>Klebsiella quasipneumoniae</i> Provides a Window into Carbapenemase Gene Transfer, Plasmid Rearrangements, and Patient Interactions with the Hospital Environment
Cited by: 39
Author(s): Amy J Mathers, Derrick W. Crook, Alison Vaughan, Barry Ke, Kasi Vegesana, Nicole Stoesser, Hardik I. Parikh, Robert Sebra, Shireen Meher Kotay, A. Sarah Walker, Anna E. Sheppard
Software Mentions: 2
Published: about 6 years ago
10.3390/antibiotics10060718
Whole-Genome Sequencing Investigation of a Large Nosocomial Outbreak Caused by ST131 H30Rx KPC-Producing Escherichia coli in Italy
Cited by: 6
Author(s): Aurora Piazza, Luigi Principe, Francesco Comandatore, Matteo Perini, Elisa Meroni, Vittoria Mattioni Marchetti, Roberta Migliavacca, Francesco Luzzaro
Software Mentions: 1
Published: about 4 years ago
10.1099/mgen.0.000232
TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data
Cited by: 27
Author(s): Anna E. Sheppard, Nicole Stoesser, Ian German-Mesner, Kasi Vegesana, A Sarah Walker, Derrick W. Crook, Amy J Mathers
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0247058
Polyphasic characterization of carbapenem-resistant Klebsiella pneumoniae clinical isolates suggests vertical transmission of the blaKPC-3 gene
Cited by: 2
Author(s): Catarina Ferreira, Santosh Kumar Bikkarolla, Karolin Frykholm, Saga Pohjanen, Margarida Brito, Catarina Lameiras, Olga C. Nunes, Fredrik Westerlund, Célia M. Manaia
Software Mentions: 1
Published: over 4 years ago