Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13073-020-00825-3

https://doi.org/10.1186/s13073-020-00825-3

Mode and dynamics of vanA-type vancomycin resistance dissemination in Dutch hospitals

Cited by: 15
Author(s): Sergio Arredondo-Alonso, Janetta Top, Jukka Corander, Rob J. L. Willems, Anita C. Schürch
Published: almost 4 years ago

Software Mentions 6

cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: scatterpie
Scatter Pie Plot
Papers that mentioned: 8
pypi: circlator
circlator: a tool to circularise genome assemblies
Papers that mentioned: 16
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: pyani
pyani provides a package and script for calculation of genome-scale average nucleotide identity.
Papers that mentioned: 120
pypi: TETyper

Papers that mentioned: 6