Ecosyste.ms: Papers

10.1002/jia2.25148

Oral abstracts of the 22nd International AIDS Conference, 23-27 July 2018, Amsterdam, the Netherlands
Cited by: 9
Author(s):
Software Mentions: 9
Published: over 6 years ago

10.1038/s41598-020-72007-5

Individual differences in fear acquisition: multivariate analyses of different emotional negativity scales, physiological responding, subjective measures, and neural activation
Cited by: 30
Author(s): Rachel Sjouwerman, Robert Scharfenort, Tina B. Lonsdorf
Software Mentions: 9
Published: about 4 years ago

10.1101/2020.11.25.20235150

T cell and antibody functional correlates of severe COVID-19
Cited by: 8
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 8
Published: almost 4 years ago

10.1371/journal.pone.0239864

Hybrid algorithms for generating optimal designs for discriminating multiple nonlinear models under various error distributional assumptions
Cited by: 6
Author(s): Chih-Chia Chen, Ping Yang Chen, Cheng Lin Hsu, Weng Kee Wong
Software Mentions: 7
Published: about 4 years ago

10.3389/fpsyt.2021.680811

TAPAS: An Open-Source Software Package for Translational Neuromodeling and Computational Psychiatry
Cited by: 55
Author(s): Stefan Frässle, Eduardo A. Aponte, Saskia Bollmann, Kay H. Brodersen, Ting Cao, Olivia K. Harrison, Sarah M. Harrison, Jakob Heinzle, Sandra Iglesias, Lars Kasper, Ekaterina I. Lomakina, Christoph Mathys, Matthias Müller-Schrader, Inês Pereira, Frederike H. Petzschner, Sudhir Raman, Dario Schöbi, Birte Toussaint, Lilian Weber, Yu Yao, Klaas Enno Stephan
Software Mentions: 7
Published: over 3 years ago

10.3390/e23040477

Hybrid Basketball Game Outcome Prediction Model by Integrating Data Mining Methods for the National Basketball Association
Cited by: 11
Author(s): Wei-Jen Chen, Mao-Jhen Jhou, Tian–Shyug Lee, Chi-Jie Lu
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0211608

Managing genomic variant calling workflows with Swift/T
Cited by: 7
Author(s): Azza E. Ahmed, Jacob R Heldenbrand, Yan W. Asmann, Faisal M. Fadlelmola, Daniel S. Katz, Katherine Kendig, Matthew Kendzior, Tiffany Li, Yingxue Ren, Elliott Rodriguez, Matthew Weber, Justin M. Wozniak, Jennie Zermeno, Liudmila Sergeevna Mainzer
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pcbi.1008315

Leveraging functional annotation to identify genes associated with complex diseases
Cited by: 13
Author(s): Wei Liu, Mo Li, Wenfeng Zhang, Geyu Zhou, Weijie Xing, Jiawei Wang, Qiongshi Lu, Hongyu Zhao
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pntd.0007609

A global genotyping survey of Strongyloides stercoralis and Strongyloides fuelleborni using deep amplicon sequencing
Cited by: 37
Author(s): Joel Barratt, Meredith Lane, Emir Talundzic, Travis Richins, Gemma Robertson, Fabio Formenti, Bobbi S. Pritt, Guilherme G. Verocai, Robson da Paixão de Souza, Neci Mato Soares, Rebecca J. Traub, Dora Buonfrate, Richard S. Bradbury
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0003415

Gene Expression Profiling of Two Distinct Neuronal Populations in the Rodent Spinal Cord
Cited by: 10
Author(s): Jesper Ryge, Ann-Charlotte Westerdahl, Preben Alstrøm, Ole Kiehn
Software Mentions: 6
Published: about 16 years ago

10.15252/embr.201846401

Inherent <scp>DNA</scp> ‐binding specificities of the <scp>HIF</scp> ‐1α and <scp>HIF</scp> ‐2α transcription factors in chromatin
Cited by: 128
Author(s): James Smythies, Min Sun, Norma Masson, Rafik Salama, Peter Simpson, Elizabeth R. Murray, Viviana K. Neumann, Matthew E. Cockman, Hani Choudhry, Peter J. Ratcliffe, David R. Mole
Software Mentions: 6
Published: about 6 years ago

10.1002/hbm.25368

Brain age prediction: A comparison between machine learning models using region‐ and voxel‐based morphometric data
Cited by: 52
Author(s): Lea Baecker, Jessica Dafflon, Pedro F. da Costa, Rafael Garcia‐Dias, Sandra Vieira, Cristina Scarpazza, Vince D. Calhoun, João Ricardo Sato, Andrea Mechelli, Walter Hugo Lopez Pinaya
Software Mentions: 5
Published: over 3 years ago

10.3389/fpls.2021.626405

By Animal, Water, or Wind: Can Dispersal Mode Predict Genetic Connectivity in Riverine Plant Species?
Cited by: 14
Author(s): Alison G. Nazareno, L. Lacey Knowles, Christopher W. Dick, Lúcia Garcez Lohmann
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12859-019-2728-2

UTAP: User-friendly Transcriptome Analysis Pipeline
Cited by: 88
Author(s): Refael Kohen, Jonathan Barlev, Gil Hornung, Gil Stelzer, Ester Feldmesser, Kiril Kogan, Marilyn Safran, Dena Leshkowitz
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.5260

Ultraconserved element (UCE) probe set design: Base genome and initial design parameters critical for optimization
Cited by: 17
Author(s): Grey T. Gustafson, Alana Alexander, John S. Sproul, James M. Pflug, David R. Maddison, Andrew Edward Z. Short
Software Mentions: 5
Published: over 5 years ago

10.3390/s18020574

Patch Transporter: Incentivized, Decentralized Software Patch System for WSN and IoT Environments
Cited by: 17
Author(s): Jong-Hyup Lee
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pgen.1009389

Gene disruption by structural mutations drives selection in US rice breeding over the last century
Cited by: 6
Author(s): Justin N. Vaughn, Walid Korani, Joshua C. Stein, Jeremy D. Edwards, Daniel G. Peterson, Sheron Simpson, Ramey C Youngblood, Jane Grimwood, Kapeel Chougule, Doreen Ware, Anna M. McClung, Brian E. Scheffler
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pcbi.1006555

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps
Cited by: 53
Author(s): Camden Jansen, Ricardo N. Ramirez, Nicole El-Ali, David Green, Jesper Tegnér, Matthias Merkenschlager, Ana Conesa, A Mortazavi
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.8301

Bioinformatics profiling identifies seven immune-related risk signatures for hepatocellular carcinoma
Cited by: 9
Author(s): Feng Xue, Lixue Yang, Binghua Dai, Hui Xue, Lei Zhang, Ruowen Ge, Ying Sun
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0206317

Proteomic analysis of Lactobacillus casei GCRL163 cell-free extracts reveals a SecB homolog and other biomarkers of prolonged heat stress
Cited by: 11
Author(s): Kayode T. Adu, Richard Wilson, David S. Nichols, Anthony L. Baker, John P. Bowman, ML Britz
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-213X-9-30

Extensive molecular differences between anterior- and posterior-half-sclerotomes underlie somite polarity and spinal nerve segmentation
Cited by: 17
Author(s): Daniel Hughes, Roger J. Keynes, David Tannahill
Software Mentions: 4
Published: over 15 years ago

10.1186/s13637-016-0044-y

A pedagogical walkthrough of computational modeling and simulation of Wnt signaling pathway using static causal models in MATLAB
Cited by: 2
Author(s): Shriprakash Sinha
Software Mentions: 4
Published: over 8 years ago

10.7554/eLife.49030

Formin-2 drives polymerisation of actin filaments enabling segregation of apicoplasts and cytokinesis in Plasmodium falciparum
Cited by: 31
Author(s): Johannes Felix Stortz, Mario Del Rosario, Mirko Singer, Jonathan M. Wilkes, Markus Meissner, Sujaan Das
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0148974

Highly Accurate Structure-Based Prediction of HIV-1 Coreceptor Usage Suggests Intermolecular Interactions Driving Tropism
Cited by: 23
Author(s): Chris A. Kieslich, Phanourios Tamamis, Yannis A. Guzman, Melis Onel, Christodoulos A. Floudas
Software Mentions: 4
Published: almost 9 years ago

10.1186/1755-8794-8-S2-S13

SeedsGraph: an efficient assembler for next-generation sequencing data
Cited by: 2
Author(s): Chuyu Wang, Maozu Guo, Xiaoyan Liu, Yang Liu, Quan Zou
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-020-64870-z

Correlation-centred variable selection of a gene expression signature to predict breast cancer metastasis
Cited by: 5
Author(s): Shiori Hikichi, Masahiro Sugimoto, Masaru Tomita
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0093873

CMT: A Constrained Multi-Level Thresholding Approach for ChIP-Seq Data Analysis
Cited by: 3
Author(s): Iman Rezaeian, Luis Rueda
Software Mentions: 4
Published: over 10 years ago

10.7554/eLife.60920

Achieving functional neuronal dendrite structure through sequential stochastic growth and retraction
Cited by: 21
Author(s): André Ferreira Castro, Lothar Baltruschat, Tomke Stürner, Amirhoushang Bahrami, Paul Jedlicka, Gaia Tavosanis, Hermann Cuntz
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12859-020-3465-2

PathME: pathway based multi-modal sparse autoencoders for clustering of patient-level multi-omics data
Cited by: 33
Author(s): Amina Lemsara, Salima Ouadfel, Holger Fröhlich
Software Mentions: 4
Published: over 4 years ago

10.1093/bioinformatics/btw303

A simple yet accurate correction for winner's curse can predict signals discovered in much larger genome scans
Cited by: 41
Author(s): Timothy B. Bigdeli, Dong‐Hyung Lee, Bradley T. Webb, Brien P. Riley, Vladimir I. Vladimirov, Ayman H. Fanous, Kenneth S. Kendler, Silviu‐Alin Bacanu
Software Mentions: 3
Published: over 8 years ago

10.3389/fped.2019.00315

Infant Brain Structural MRI Analysis in the Context of Thoracic Non-cardiac Surgery and Critical Care
Cited by: 15
Author(s): Chandler R. L. Mongerson, Sophie L. Wilcox, Stacy M. Goins, Danielle B. Pier, David Zurakowski, Russell W. Jennings, Dusica Bajic
Software Mentions: 3
Published: over 5 years ago

10.1186/s13040-018-0175-7

PathCORE-T: identifying and visualizing globally co-occurring pathways in large transcriptomic compendia
Cited by: 15
Author(s): Kathleen M. Chen, Jie Tan, Gregory P. Way, Georgia Doing, Deborah A. Hogan, Casey S. Greene
Software Mentions: 3
Published: over 6 years ago

10.3389/fnins.2020.00225

fMRI-Targeted High-Angular Resolution Diffusion MR Tractography to Identify Functional Language Tracts in Healthy Controls and Glioma Patients
Cited by: 25
Author(s): Francesco Sanvito, Eduardo Caverzasi, Marco Riva, Kesshi Jordan, Valeria Blasi, Paola Scifo, Antonella Iadanza, Sofia Crespi, Sara Cirillo, Alessandra Casarotti, Antonella Leonetti, Guglielmo Puglisi, Marco Grimaldi, Lorenzo Bello, Maria Luisa Gorno‐Tempini, Roland G. Henry, Andrea Falini, Antonella Castellano
Software Mentions: 3
Published: over 4 years ago

10.1186/s12859-014-0361-7

Tools for T-RFLP data analysis using Excel
Cited by: 15
Author(s): Nils Johan Fredriksson, Malte Hermansson, Britt‐Marie Wilén
Software Mentions: 3
Published: about 10 years ago

10.3389/fphar.2020.01075

A Multiomics Approach Unravels New Toxins With Possible In Silico Antimicrobial, Antiviral, and Antitumoral Activities in the Venom of Acanthoscurria rondoniae
Cited by: 16
Author(s): Guilherme A Câmara, Milton Yutaka Nishiyama-Jr, Eduardo S. Kitano, Úrsula Castro de Oliveira, Pedro I. da Silva, Inácio L.M. Junqueira-de-Azevedo, Alexandre Keiji Tashima
Software Mentions: 3
Published: over 4 years ago

10.3389/fgene.2018.00332

A Gene-Based Positive Selection Detection Approach to Identify Vaccine Candidates Using Toxoplasma gondii as a Test Case Protozoan Pathogen
Cited by: 17
Author(s): Stephen J. Goodswen, Paul J. Kennedy, John Ellis
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0065440

Synthetic-Type Control Charts for Time-Between-Events Monitoring
Cited by: 29
Author(s): Yen Yen Fang, Michael B. C. Khoo, Ming Ha Lee
Software Mentions: 3
Published: over 11 years ago

10.1002/mbo3.312

Evaluation of <scp>DNA</scp> extraction kits and phylogenetic diversity of the porcine gastrointestinal tract based on Illumina sequencing of two hypervariable regions
Cited by: 52
Author(s): Katharina Burbach, Jana Seifert, Dietmar H. Pieper, Amélia Camarinha‐Silva
Software Mentions: 3
Published: about 9 years ago

10.3390/s17040888

A Latency and Coverage Optimized Data Collection Scheme for Smart Cities Based on Vehicular Ad-hoc Networks
Cited by: 33
Author(s): Yixuan Xu, Xi Chen, Anfeng Liu, Chunhua Hu
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj-cs.527

Distributed in-memory data management for workflow executions
Cited by: 2
Author(s): Renan Souza, Vítor Silva, Alexandre A. B. Lima, Daniel de Oliveira, Patrick Valduriez, Marta Mattoso
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.480

Diversity and selective pressures of anticoagulants in three medicinal leeches (Hirudinida: Hirudinidae, Macrobdellidae)
Cited by: 47
Author(s): Sebastian Kvist, Gi–Sik Min, Mark E. Siddall
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-2148-6-3

Recovery and evolutionary analysis of complete integron gene cassette arrays from Vibrio
Cited by: 54
Author(s): Yan Boucher, Camilla Nesbø, Michael J. Joss, Andrew Robinson, Bridget C. Mabbutt, Michael R. Gillings, W. Ford Doolittle, H. W. Stokes
Software Mentions: 3
Published: almost 19 years ago

10.3390/ijms22168605

The Use of Total Thrombus Formation Analysis System as a Tool to Assess Platelet Function in Bleeding and Thrombosis Risk—A Systematic Review
Cited by: 9
Author(s): Joanna Sikora, Aleksandra Karczmarska-Wódzka, Joanna Bugieda, Przemysław Sobczak
Software Mentions: 3
Published: over 3 years ago

10.1128/JVI.02394-20

CAGE-Seq Reveals that HIV-1 Latent Infection Does Not Trigger Unique Cellular Responses in a Jurkat T Cell Model
Cited by: 1
Author(s): Hiroyuki Matsui, Kotaro Shirakawa, Yoshinobu Konishi, Shigeki Hirabayashi, Anamaria Daniela Sarca, Hirofumi Fukuda, Ryosuke Nomura, Emani Stanford, Yoshihito Horisawa, Yasuhiro Kazuma, Tadahiko Matsumoto, Hiroyuki Yamazaki, Yuji Murakawa, Emilie Battivelli, Eric Verdin, Yoshio Koyanagi, Akifumi Takaori‐Kondo
Software Mentions: 3
Published: over 3 years ago

10.1111/2041-210X.12962

Field methods for sampling tree height for tropical forest biomass estimation
Cited by: 68
Author(s): Martin J. P. Sullivan, Simon L. Lewis, Wannes Hubau, Lan Qie, Timothy R. Baker, Lindsay F. Banin, Jérôme Chave, Aida Cuni‐Sanchez, Ted R. Feldpausch, Gabriela Lopez‐Gonzalez, E.J.M.M. Arets, Peter S. Ashton, Jean François Bastin, Nicholas J. Berry, Jan Bogaert, René Boot, Francis Q. Brearley, Roel J. W. Brienen, David F. R. P. Burslem, Charles De Cannière, Markéta Chudomelová, Martin Dančák, Corneille E. N. Ewango, Radim Hédl, J. Lloyd, Jean-Rémy Makana, Yadvinder Malhi, Beatriz Schwantes Marimon, Faizah Metali, Sam Moore, László Nagy, Percy Núñez Vargas, Colin A. Pendry, Hirma Ramírez‐Angulo, J. Reitsma, Ervan Rutishauser, Kamariah Abu Salim, Bonaventure Sonké, Rahayu Sukmaria Sukri, Terry Sunderland, Martin Svátek, Peter M. Umunay, Rodolfo Vásquez Martínez, Ronald Vernimmen, Emilio Vilanova Torre, Jason Vleminckx, Vincent Vos, Oliver L. Phillips
Software Mentions: 3
Published: almost 7 years ago

10.3390/s21134453

SAVSDN: A Scene-Aware Video Spark Detection Network for Aero Engine Intelligent Test
Cited by: 1
Author(s): Jie Kou, Xinman Zhang, Yuxuan Huang, Cong Zhang
Software Mentions: 3
Published: over 3 years ago

10.1002/brb3.1188

Adaption and validation of the Mississippi Aphasia Screening Test to Estonian speakers with aphasia
Cited by: 3
Author(s): Aaro Nursi, Marika Padrik, Liisa Nursi, Maarja Pähkel, Liis Virkunen, Anne Küttim-Rips, Pille Taba
Software Mentions: 3
Published: almost 6 years ago

10.3390/s17081828

Energy-Efficient Hosting Rich Content from Mobile Platforms with Relative Proximity Sensing
Cited by: 0
Author(s): Ki-Woong Park, Younho Lee, Sung Hoon Baek
Software Mentions: 3
Published: over 7 years ago

10.1002/brb3.1816

Development of a Thai tool for assessing behavioral and psychological symptoms of dementia: A confirmatory factor analysis
Cited by: 3
Author(s): Harisd Phannarus, Weerasak Muangpaisan, Pitiporn Siritipakorn, Sudarat Pianchob, Orawan Supapueng
Software Mentions: 3
Published: about 4 years ago

10.1186/s40359-020-00457-7

A randomized controlled trial comparing parent child interaction therapy - toddler, circle of security– parenting™ and waitlist controls in the treatment of disruptive behaviors for children aged 14–24 months: study protocol
Cited by: 7
Author(s): Jane Kohlhoff, Sara Cibralic, Nancy M. Wallace, Susan Morgan, Catherine McMahon, Erinn Hawkins, Valsamma Eapen, Nancy Briggs, Anna Huber, Cheryl B. McNeil
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-69969-x

Cognitive function and brain plasticity in a rat model of shift work: role of daily rhythms, sleep and glucocorticoids
Cited by: 7
Author(s): Andrea Rørvik Marti, Torhild Pedersen, Jonathan P. Wisor, Jelena Mrdalj, Øystein Holmelid, Sudarshan Patil, Peter Meerlo, Clive R. Bramham, Janne Grønli
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0075057

Origins of Myc Proteins – Using Intrinsic Protein Disorder to Trace Distant Relatives
Cited by: 21
Author(s): Amir Mahani, Johan Henriksson, Anthony P. H. Wright
Software Mentions: 3
Published: about 11 years ago

10.1002/jcc.25077

GenIce: Hydrogen‐Disordered Ice Generator
Cited by: 108
Author(s): Masakazu Matsumoto, Takuma Yagasaki, Hideki Tanaka
Software Mentions: 3
Published: about 7 years ago

10.1155/2019/9864213

A Wrapper Feature Subset Selection Method Based on Randomized Search and Multilayer Structure
Cited by: 12
Author(s): Yifei Mao, Yuansheng Yang
Software Mentions: 3
Published: about 5 years ago

10.1186/s13321-020-00468-x

Structure–activity relationship-based chemical classification of highly imbalanced Tox21 datasets
Cited by: 34
Author(s): Gabriel Idakwo, Sundarapandian Thangapandian, Joseph Luttrell, Yan Li, Nan Wang, Zhaoxian Zhou, Huixiao Hong, Beifang Yang, Chaoyang Zhang, Ping Gong
Software Mentions: 3
Published: about 4 years ago

10.1038/srep17585

QUANTITY: An Isobaric Tag for Quantitative Glycomics
Cited by: 59
Author(s): Shuang Yang, Meiyao Wang, Lijun Chen, Bojiao Yin, Guoquiang Song, Illarion V. Turko, Karen W. Phinney, Michael J. Betenbaugh, Hui Zhang, Shuwei Li
Software Mentions: 3
Published: almost 9 years ago

10.1017/gmh.2015.21

Development of a scoring system for non-specialist ratings of clinical competence in global mental health: a qualitative process evaluation of the Enhancing Assessment of Common Therapeutic Factors (ENACT) scale
Cited by: 53
Author(s): Brandon A. Kohrt, Megan Ramaiya, Sauharda Rai, Anvita Bhardwaj, Mark J. D. Jordans
Software Mentions: 3
Published: almost 10 years ago

10.1186/1471-2164-13-492

Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat
Cited by: 35
Author(s): Andreas W. Schreiber, Matthew Hayden, Kerrie Forrest, Stephan Kong, Peter Langridge, Ute Baumann
Software Mentions: 3
Published: almost 13 years ago

10.1029/2020MS002138

Clouds and Convective Self‐Aggregation in a Multimodel Ensemble of Radiative‐Convective Equilibrium Simulations
Cited by: 69
Author(s): Allison A. Wing, Catherine L. Stauffer, Tobias Becker, Kevin A. Reed, Min‐Seop Ahn, Nathan Arnold, Sandrine Bony, Mark Branson, G. H. Bryan, Jean‐Pierre Chaboureau, Stephan R. de Roode, Gayatri Kulkarni, Cathy Hohenegger, I‐Kuan Hu, Fredrik Jansson, Todd R. Jones, Marat Khairoutdinov, Dae Hyun Kim, Zane Martin, Shuhei Matsugishi, Brian Medeiros, Hiroaki Miura, Yumin Moon, Sebastian K. Müller, Tomoki Ohno, Max Popp, Thara Prabhakaran, David A. Randall, Rosimar Ríos-Berríos, Nicolas Rochetin, Romain Roehrig, David M. Romps, James H. Ruppert, Masaki Satoh, Levi G. Silvers, Martin S. Singh, Björn Stevens, Lorenzo Tomassini, Chiel C. van Heerwaarden, Shuguang Wang, Ming Zhao
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-020-03903-w

Comparison of seven in silico tools for evaluating of daphnia and fish acute toxicity: case study on Chinese Priority Controlled Chemicals and new chemicals
Cited by: 19
Author(s): Li Zhou, Deling Fan, Wei Yin, Wen Gu, Zhen Wang, Jining Liu, Lili Shi, Mingqing Liu, Guixiang Ji
Software Mentions: 3
Published: over 3 years ago

10.1186/1475-925X-11-54

Remote health monitoring for elderly through interactive television
Cited by: 23
Author(s): Susanna Spinsante, Ennio Gambi
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12864-017-3980-3

Mining sequence variations in representative polyploid sugarcane germplasm accessions
Cited by: 37
Author(s): Xiping Yang, Song Jiang, Qi You, Dev Paudel, Jisen Zhang, Jianping Wang
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2021.711747

A Pipeline for Predicting the Treatment Response of Neoadjuvant Chemoradiotherapy for Locally Advanced Rectal Cancer Using Single MRI Modality: Combining Deep Segmentation Network and Radiomics Analysis Based on “Suspicious Region”
Cited by: 9
Author(s): Xiaolin Pang, Fang Wang, Qianru Zhang, Yan Li, Ronglian Huang, Xin-Ke Yin, Xinjuan Fan
Software Mentions: 2
Published: over 3 years ago

10.6026/97320630013086

Epitope design of L1 protein for vaccine production against Human Papilloma Virus types 16 and 18
Cited by: 8
Author(s): Sunanda Baidya, Rasel Das, Md. Golam Kabir, Md. Arifuzzaman
Software Mentions: 2
Published: over 7 years ago

10.3389/fneur.2019.00597

A Phase 2, Randomized, Double-Blind, Placebo-Controlled Trial of CX-8998, a Selective Modulator of the T-Type Calcium Channel in Inadequately Treated Moderate to Severe Essential Tremor: T-CALM Study Design and Methodology for Efficacy Endpoint and Digital Biomarker Selection
Cited by: 12
Author(s): Spyros Papapetropoulos, Margaret Lee, Stacey Boyer, Evan Newbold
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-018-5015-0

Defence transcriptome assembly and pathogenesis related gene family analysis in Pinus tecunumanii (low elevation)
Cited by: 29
Author(s): Erik A. Visser, Jill L. Wegrzyn, Alexander Andrew Myburg, Sanushka Naidoo
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2018.02851

Comparison of the Whole Cell Proteome and Secretome of Epidemic Bordetella pertussis Strains From the 2008–2012 Australian Epidemic Under Sulfate-Modulating Conditions
Cited by: 11
Author(s): Laurence Don Wai Luu, Sophie Octavia, Ling Zhong, Mark J. Raftery, Vitali Sintchenko, Ruiting Lan
Software Mentions: 2
Published: almost 6 years ago

10.3389/fncel.2015.00388

Decrease of gene expression of astrocytic 5-HT2B receptors parallels development of depressive phenotype in a mouse model of Parkinson’s disease
Cited by: 28
Author(s): Xique Zhang, Dan Song, Leyi Gu, Yan Ren, Alexei Verkhratsky, Liang Peng
Software Mentions: 2
Published: about 9 years ago

10.3389/fimmu.2021.641378

Lymphocyte Non-Specific Function Detection Facilitating the Stratification of Mycobacterium tuberculosis Infection
Cited by: 6
Author(s): Ying Luo, Ying Xue, Yimin Cai, Qun Lin, Guoqing Tang, Huijuan Song, Wei Liu, Mao L, Yuan Xu, Yu Zhou, Weiyong Liu, Shiji Wu, Ziyong Sun, Feng Wang
Software Mentions: 2
Published: over 3 years ago

10.3389/fcimb.2021.575650

Combination of Blood Routine Examination and T-SPOT.TB Assay for Distinguishing Between Active Tuberculosis and Latent Tuberculosis Infection
Cited by: 8
Author(s): Ying Luo, Guoqing Tang, Yuan Xu, Qun Lin, Mao L, Huijuan Song, Ying Xue, Shiji Wu, Renren Ouyang, Hongyan Hou, Ziyong Sun
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2105-12-15

Shape-based peak identification for ChIP-Seq
Cited by: 45
Author(s): Valerie Hower, Steven N. Evans, Lior Pachter
Software Mentions: 2
Published: almost 14 years ago

10.3389/fcimb.2021.656421

Aptamers: An Emerging Tool for Diagnosis and Therapeutics in Tuberculosis
Cited by: 12
Author(s): Shruti Srivastava, Philip Abraham, Sangita Mukhopadhyay
Software Mentions: 2
Published: over 3 years ago

10.3389/fnint.2020.556660

Evaluating Sensory Integration/Sensory Processing Treatment: Issues and Analysis
Cited by: 27
Author(s): Stephen Camarata, Lucy Miller, Mark T. Wallace
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2105-9-489

Determining gene expression on a single pair of microarrays
Cited by: 7
Author(s): Robert W. Reid, Anthony A. Fodor
Software Mentions: 2
Published: about 16 years ago

10.1002/2211-5463.13166

Three‐dimensional structures of avian beta‐microseminoproteins: insight from the chicken egg‐specific beta‐microseminoprotein 3 paralog
Cited by: 2
Author(s): Franck Coste, Thierry Moreau, Valérie Labas, Magali Chessé, Mégane Brégeon, Hervé Meudal, Karine Loth, B. Castaing, Nicolas Guyot, Sophie Réhault-Godbert
Software Mentions: 2
Published: over 3 years ago

10.12688/f1000research.10541.3

A voltage-dependent fluorescent indicator for optogenetic applications, archaerhodopsin-3: Structure and optical properties from in silico modeling
Cited by: 4
Author(s): Dmitrii M. Nikolaev, Emil Anton, В. М. Бойцов, Maxim S. Panov, Mikhail N. Ryazantsev
Software Mentions: 2
Published: about 7 years ago

10.1002/mbo3.356

Spatial and temporal variability of bacterial communities within a combined sewer system
Cited by: 3
Author(s): Henriette Stokbro Jensen, Raju Sekar, Will Shepherd, A. Mark Osborn, Simon Tait, Catherine A. Biggs
Software Mentions: 2
Published: over 8 years ago

10.1002/1873-3468.12250

A β‐mannan utilization locus in <i>Bacteroides ovatus</i> involves a GH36 α‐galactosidase active on galactomannans
Cited by: 38
Author(s): Sumitha K. Reddy, Viktoria Bågenholm, Nicholas A. Pudlo, Hanene Bouraoui, Nicole M. Koropatkin, Eric C. Martens, Henrik Stålbrand
Software Mentions: 2
Published: over 8 years ago

10.3390/foods10030482

Sensory Acceptability and Proximate Composition of 3-Blend Plant-Based Dairy Alternatives
Cited by: 13
Author(s): Ama Frempomaa Oduro, Firibu Kwesi Saalia, Maame Yaakwaah Blay Adjei
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2021.632731

Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan
Cited by: 8
Author(s): Scott C. Thomas, Devon Payne, Kevin O. Tamadonfar, Cale O. Seymour, Jian‐Yu Jiao, Senthil K. Murugapiran, Dengxun Lai, Rebecca Lau, Benjamin P. Bowen, Leslie P. Silva, Katherine Louie, Marcel Huntemann, Alicia Clum, Alex Spunde, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, I-Min A. Chen, Dimitrios Stamatis, T. B. K. Reddy, Ronan O’Malley, Chris Daum, Nicole Shapiro, Natalia Ivanova, Nikos C. Kyrpides, Tanja Woyke, Emiley A. Eloe‐Fadrosh, Trinity L. Hamilton, Paul Dijkstra, Jeremy A. Dodsworth, Trent Northen, Wenjun Li, Brian P. Hedlund
Software Mentions: 2
Published: over 3 years ago

10.15252/emmm.201910264

Predicting antimicrobial resistance in <i>Pseudomonas aeruginosa</i> with machine learning‐enabled molecular diagnostics
Cited by: 92
Author(s): Ariane Khaledi, Aaron Weimann, Monika Schniederjans, Ehsaneddin Asgari, Tzu‐Hao Kuo, Antonio Oliver, Gabriel Cabot, Axel Kola, Petra Gastmeier, Michael Hogardt, Daniel E Jonas, Mohammad R. K. Mofrad, Andreas Bremges, Alice C. McHardy, Susanne Häußler
Software Mentions: 2
Published: almost 5 years ago

10.1002/med.21764

Artificial intelligence and machine learning‐aided drug discovery in central nervous system diseases: State‐of‐the‐arts and future directions
Cited by: 89
Author(s): Sezen Vatansever, Avner Schlessinger, Daniel Wacker, H. Ümit Kanıskan, Jian Jin, Ming‐Ming Zhou, Bin Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2105-15-82

Transient protein-protein interface prediction: datasets, features, algorithms, and the RAD-T predictor
Cited by: 42
Author(s): Calem J Bendell, Shalon Liu, Tristan Aumentado-Armstrong, Bogdan Istrate, Paul Cernek, Samuel Khan, Sergiu Picioreanu, Michael Zhao, Robert A. Murgita
Software Mentions: 2
Published: over 10 years ago

10.1155/2021/6627765

Transfer Extreme Learning Machine with Output Weight Alignment
Cited by: 5
Author(s): Shaofei Zang, Yuhu Cheng, Xuesong Wang, Yongyi Yan
Software Mentions: 2
Published: almost 4 years ago

10.1097/MD.0000000000010225

Acupuncture for chronic pelvic inflammatory disease
Cited by: 6
Author(s): Ying Cheng, Youcai Yuan, Yuhao Jin, Na Xu, Taipin Guo
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0222535

False-negative errors in next-generation sequencing contribute substantially to inconsistency of mutation databases
Cited by: 9
Author(s): Young Ho Kim, Yura Song, Jong Kwang Kim, Tae Min Kim, Hye Won Sim, Hyung Lae Kim, Hyonchol Jang, Young Woo Kim, Kyung Taek Hong
Software Mentions: 2
Published: about 5 years ago

10.1242/dev.154609

An asymmetric attraction model for the diversity and robustness of cell arrangement in nematodes
Cited by: 35
Author(s): Kazunori Yamamoto, Asako Kimura
Software Mentions: 2
Published: almost 7 years ago

10.1002/ece3.5043

Semi‐polar root exudates in natural grassland communities
Cited by: 25
Author(s): Sophie Dietz, Katharina Herz, Stefanie Döll, Sylvia Haider, Ute Jandt, Helge Bruelheide, Dierk Scheel
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0075542

Efficient and Interpretable Prediction of Protein Functional Classes by Correspondence Analysis and Compact Set Relations
Cited by: 7
Author(s): Jia‐Ming Chang, Jean François Taly, Ionas Erb, Ting Yi Sung, Wen Lian Hsu, Chuan Yi Tang, Cédric Notredame, Emily Chia Yu Su
Software Mentions: 2
Published: about 11 years ago

10.1186/1752-153X-4-S1-S4

CAESAR models for developmental toxicity
Cited by: 755
Author(s): Antonio Cassano, Alberto Manganaro, Todd M. Martin, Douglas Young, Nadège Piclin, Marco Pintore, Davide Bigoni, Emilio Benfenati
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0223351

Motivation for alcohol consumption or abstinence during pregnancy: A clinical-qualitative study in Brazil
Cited by: 8
Author(s): Júlia Lustosa Martinelli, Carla Maria Ramos Germano, Lucimar Retto da Silva de Avó, Bruno José Barcellos Fontanella, Débora Gusmão Melo
Software Mentions: 2
Published: about 5 years ago

10.1007/s11517-015-1331-6

Dynamic CT perfusion image data compression for efficient parallel processing
Cited by: 5
Author(s): Renan Sales Barros, Sílvia D. Olabarriaga, Jordi Borst, Marianne A.A. van Walderveen, Jorrit S. Posthuma, Geert J. Streekstra, Marcel van Herk, Charles B. L. M. Majoie, Henk A. Marquering
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2105-9-348

Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments
Cited by: 13
Author(s): Stephen Tanner, Pankaj Agarwal
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0195399

Stochastic satisficing account of confidence in uncertain value-based decisions
Cited by: 7
Author(s): Uri Hertz, Bahador Bahrami, Mehdi Keramati
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0027069

Diagnostic Accuracy, Effectiveness and Cost for Cognitive Impairment and Dementia Screening of Three Short Cognitive Tests Applicable to Illiterates
Cited by: 45
Author(s): C. Carnero-Pardo, Beatriz Espejo-Martínez, Samuel López-Alcalde, María Espinosa-García, Carmen Sáez-Zea, Elisa Hernández Torres, José Luis Navarro Espigares, Rosa Vílchez-Carrillo
Software Mentions: 2
Published: about 13 years ago

10.1186/1471-2091-13-24

A standard numbering scheme for thiamine diphosphate-dependent decarboxylases
Cited by: 34
Author(s): Constantin Vogel, Michael Widmann, Martina Pohl, Jürgen Pleiss
Software Mentions: 2
Published: about 12 years ago

10.1007/s00787-014-0588-x

Maternal pre-pregnancy risk drinking and toddler behavior problems: the Norwegian Mother and Child Cohort Study
Cited by: 21
Author(s): Ann Kristin Knudsen, Jens Christoffer Skogen, Eivind Ystrøm, Børge Sivertsen, Grethe S. Tell, Leila Torgersen
Software Mentions: 2
Published: over 10 years ago

10.1140/epjc/s10052-017-5113-1

Status of the scalar singlet dark matter model
Cited by: 121
Author(s): Peter Athron, Csaba Balázs, Torsten Bringmann, A. G. Buckley, M. Chrząszcz, J. Conrad, Jonathan M. Cornell, Lars A. Dal, Joakim Edsjö, Benjamin Farmer, P. Jackson, Felix Kahlhoefer, Abram Krislock, Anders Kvellestad, James McKay, F. Mahmoudi, Gregory D. Martinez, A. Putze, Are Raklev, C. Rogan, A. F. Saavedra, Christopher Savage, Pat Scott, N. Serra, Christoph Weniger, M. J. White
Software Mentions: 2
Published: over 7 years ago

10.1186/s12884-019-2652-5

Alcohol use, pregnancy and associated risk factors: a pilot cross-sectional study of pregnant women attending prenatal care in an urban city
Cited by: 14
Author(s): Imelda K. Moise
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0033819

A 3-Year Study Reveals That Plant Growth Stage, Season and Field Site Affect Soil Fungal Communities while Cultivar and GM-Trait Have Minor Effects
Cited by: 57
Author(s): S. Emilia Hannula, Wietse de Boer, Johannes van Veen
Software Mentions: 2
Published: over 12 years ago