pypi: Sickle | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-50139-7

Microbiota fingerprints within the oral cavity of cetaceans as indicators for population biomonitoring
Cited by: 14
Author(s): Pedro Soares-Castro, Helena Araújo-Rodrigues, Filipa Godoy-Vitorino, Marisa Ferreira, Pablo Covelo, Alfredo López, José Vingada, Catarina Eira, Pedro M. Santos
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-020-78934-7

DNA metabarcoding uncovers fungal diversity in soils of protected and non-protected areas on Deception Island, Antarctica
Cited by: 30
Author(s): Luiz Henrique Rosa, Thamar Holanda da Silva, Mayara Baptistucci Ogaki, Otávio Henrique Bezerra Pinto, Michael Stech, Peter Convey, Micheline Carvalho‐Silva, Carlos A. Rosa, Paulo Eduardo Aguiar Saraiva Câmara
Software Mentions: 3
Published: almost 4 years ago

10.1016/j.stem.2020.05.004

Human-iPSC-Derived Cardiac Stromal Cells Enhance Maturation in 3D Cardiac Microtissues and Reveal Non-cardiomyocyte Contributions to Heart Disease
Cited by: 302
Author(s): Elisa Giacomelli, Viviana Meraviglia, Giulia Campostrini, Amy Cochrane, Xu Cao, Ruben W.J. van Helden, Ana Krotenberg Garcia, Maria Mircea, Sarantos Kostidis, Richard P. Davis, Berend J. van Meer, Carolina R. Jost, Abraham J. Koster, Hailiang Mei, David G. Míguez, Aat A. Mulder, Mario Ledesma-Terrón, Giulio Pompilio, Luca Sala, Daniela Salvatori, Roderick C. Slieker, Elena Sommariva, Antoine A.F. de Vries, Martin Giera, Stefan Semrau, Leon G.J. Tertoolen, Valeria V. Orlova, Milena Bellin, Christine L. Mummery
Software Mentions: 3
Published: over 4 years ago

10.1186/s13568-017-0444-8

The role of inorganic nitrogen in successful formation of granular biofilms for wastewater treatment that support cyanobacteria and bacteria
Cited by: 45
Author(s): Kristie Stauch-White, V. Srinivasan, Wenye Camilla Kuo-Dahab, Chul Park, Caitlyn S. Butler
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0202844

Predicting provenance of forensic soil samples: Linking soil to ecological habitats by metabarcoding and supervised classification
Cited by: 35
Author(s): Camilla Fløjgaard, Tobias Guldberg Frøslev, Ane Kirstine Brunbjerg, Hans Henrik Bruun, Jesper Erenskjold Moeslund, Anders J. Hansen, Rasmus Ejrnæs
Software Mentions: 3
Published: over 5 years ago

10.1038/srep40218

Identifying a gene expression signature of cluster headache in blood
Cited by: 19
Author(s): Else Eising, Nadine Pelzer, Lisanne S. Vijfhuizen, Boukje de Vries, Michel D. Ferrari, Peter A.C. ’t Hoen, Gisela M. Terwindt, Arn M. J. M. van den Maagdenberg
Software Mentions: 3
Published: almost 8 years ago

10.1038/srep28984

An emerging zoonotic clone in the Netherlands provides clues to virulence and zoonotic potential of Streptococcus suis
Cited by: 37
Author(s): Niels Willemse, Kate J. Howell, Lucy A. Weinert, Annet Heuvelink, Yvonne Pannekoek, Jaap A. Wagenaar, Hilde E. Smith, Arie van der Ende, Constance Schultsz
Software Mentions: 3
Published: over 8 years ago

10.1186/1471-2164-14-670

An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome
Cited by: 135
Author(s): Marco Ferrarini, Marco Moretto, J. A. Ward, Nada Šurbanovski, Vladimir D. Stevanović, L. Giongo, Roberto Viola, Duccio Cavalieri, Riccardo Velasco, Alessandro Cestaro, Daniel J. Sargent
Software Mentions: 3
Published: about 11 years ago

10.1038/s41598-018-33693-4

RNA sequencing and de novo assembly of Solanum trilobatum leaf transcriptome to identify putative transcripts for major metabolic pathways
Cited by: 17
Author(s): Adil Lateef, Sudheesh K. Prabhudas, Purushothaman Natarajan
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pgen.1006909

Termination factor Rho: From the control of pervasive transcription to cell fate determination in Bacillus subtilis
Cited by: 48
Author(s): Vladimir Bidnenko, Pierre Nicolas, Aleksandra Grylak-Mielnicka, Olivier Delumeau, Sandrine Auger, Anne Aucouturier, Cyprien Guérin, Francis Repoila, Jacek Bardowski, Stéphane Aymerich, Elena Bidnenko
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0227886

Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses
Cited by: 57
Author(s): Youn Wook Chung, Ho Jin Gwak, Sungmin Moon, Mina Rho, Ji Hwan Ryu
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pgen.1005122

SERPINB11 Frameshift Variant Associated with Novel Hoof Specific Phenotype in Connemara Ponies
Cited by: 22
Author(s): Carrie J. Finno, Carlynn Stevens, Amy Young, Verena K. Affolter, Nikhil Joshi, Sheila Ramsay, Danika L. Bannasch
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0204629

Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing
Cited by: 64
Author(s): Simon Poirier, Olivier Rué, R. Peguilhan, Gwendoline Coeuret, Monique Zagorec, Marie‐Christine Champomier‐Vergès, Valentin Loux, Stéphane Chaillou
Software Mentions: 3
Published: about 6 years ago

10.1093/gigascience/giz138

Pseudo-chromosome–length genome assembly of a double haploid “Bartlett” pear (Pyrus communis L.)
Cited by: 64
Author(s): Gareth Linsmith, Stéphane Rombauts, Sara Montanari, Cecilia Deng, Jean‐Marc Celton, Philippe Guérif, Chang Liu, Rolf Lohaus, Jason D. Zurn, Alessandro Cestaro, Nahla V. Bassil, Linda V. Bakker, Elio Schijlen, Susan E. Gardiner, Yves Lespinasse, Charles‐Eric Durel, Riccardo Velasco, David B. Neale, David Chagné, Yves Van de Peer, Michela Troggio, Luca Bianco
Software Mentions: 3
Published: almost 5 years ago

10.3390/plants9010063

Comparative Analysis between Wild and Cultivated Cucumbers Reveals Transcriptional Changes during Domestication Process
Cited by: 6
Author(s): Eslam M. Abdel-Salam, Abdulrahman A. Alatar, Quaiser Saquib, Hend A. Alwathnani
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0183859

Genome sequences of lower Great Lakes Microcystis sp. reveal strain-specific genes that are present and expressed in western Lake Erie blooms
Cited by: 35
Author(s): Kevin A. Meyer, Timothy W. Davis, Susan B. Watson, Vincent J. Denef, Michelle A. Berry, Gregory J. Dick
Software Mentions: 3
Published: about 7 years ago

10.1186/s13059-014-0540-x

Elucidating variations in the nucleotide sequence of Ebola virus associated with increasing pathogenicity
Cited by: 33
Author(s): Stuart Dowall, David A. Matthews, Isabel García-Dorival, Irene Taylor, John Kenny, Christiane Hertz‐Fowler, Neil Hall, Kara Corbin-Lickfett, Cyril Empig, Kyle Schlunegger, John N. Barr, Miles W. Carroll, Roger Hewson, Julian A. Hiscox
Software Mentions: 3
Published: about 10 years ago

10.1186/s12885-019-5474-y

Genome sequencing analysis of blood cells identifies germline haplotypes strongly associated with drug resistance in osteosarcoma patients
Cited by: 15
Author(s): Krithika Bhuvaneshwar, Michael A. Harris, Yuriy Gusev, Subha Madhavan, Ramaswamy K. Iyer, Thierry Vilboux, John F. Deeken, Elizabeth Yang, Sadhna Shankar
Software Mentions: 3
Published: over 5 years ago

10.1111/pbi.12685

Indel‐seq: a fast‐forward genetics approach for identification of trait‐associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan)
Cited by: 57
Author(s): Vikas K. Singh, Aamir W. Khan, Rachit K. Saxena, Pallavi Sinha, Sandip M. Kale, Swathi Parupalli, Vinay Kumar, Annapurna Chitikineni, Suryanarayana Vechalapu, C.V. Sameer Kumar, Mamta Sharma, G. Anuradha, K.N. Yamini, S. Muniswamy, Rajeev K. Varshney
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-020-06827-0

Transcriptome analysis reveals a molecular understanding of nicotinamide and butyrate sodium on meat quality of broilers under high stocking density
Cited by: 10
Author(s): Yuqin Wu, Youli Wang, Dafei Yin, Tahir Mahmood, Jianmin Yuan
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj.11465

Metabolism and transcriptome profiling provides insight into the genes and transcription factors involved in monoterpene biosynthesis of borneol chemotype of Cinnamomum camphora induced by mechanical damage
Cited by: 9
Author(s): Zerui Yang, Chunzhu Xie, Yuying Huang, Wenli An, Shanshan Liu, Song Huang, Xiasheng Zheng
Software Mentions: 3
Published: over 3 years ago

10.1186/s42523-020-00064-2

Oregano essential oil improves piglet health and performance through maternal feeding and is associated with changes in the gut microbiota
Cited by: 19
Author(s): Heidi Hall, Daniel J. Wilkinson, M Le Bon
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0163148

Evaluation of Lysis Methods for the Extraction of Bacterial DNA for Analysis of the Vaginal Microbiota
Cited by: 64
Author(s): A. Christina Gill, Janneke van de Wijgert, Frances Blow, Alistair C. Darby
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-018-4596-y

Divergent transcriptomic responses underlying the ranaviruses-amphibian interaction processes on interspecies infection of Chinese giant salamander
Cited by: 14
Author(s): Ke Fei, Jian‐Fang Gui, Zhongyuan Chen, Tao Li, Cun-Ke Lei, Zi-Hao Wang, Qi-Ya Zhang
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0224379

Molecular characterization of lung adenocarcinoma from Korean patients using next generation sequencing
Cited by: 12
Author(s): Youngsub Chun, Jae Woo Choi, Min Hee Hong, Dongmin Jung, Hyeonju Son, Eun Kyung Cho, Young Joo Min, Sang‐We Kim, Keunchil Park, Sung Sook Lee, Sang Woo Kim, Hye Ryun Kim, Byoung Chul Cho
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-018-36364-6

Impact of CFTR modulation with Ivacaftor on Gut Microbiota and Intestinal Inflammation
Cited by: 88
Author(s): Chee Y. Ooi, Saad Syed, Laura Rossi, Millie Garg, Bronwen Needham, Julie Avolio, Kelsey Young, Michael G. Surette, Tanja Gonska
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13071-015-1083-z

RNA-seq analyses of changes in the Anopheles gambiae transcriptome associated with resistance to pyrethroids in Kenya: identification of candidate-resistance genes and candidate-resistance SNPs
Cited by: 32
Author(s): Mariangela Bonizzoni, Eric Ochomo, William A. Dunn, Monica Britton, Yaw A. Afrane, Guofa Zhou, Joshua A. Hartsel, Ming‐Chieh Lee, Jiabao Xu, Andrew K. Githeko, Joseph Fass, Guiyun Yan
Software Mentions: 2
Published: about 9 years ago

10.1099/mgen.0.000448

Genomic instability in an interspecific hybrid of the genus Saccharomyces: a matter of adaptability
Cited by: 5
Author(s): Miguel Morard, Clara Ibáñez, Ana Cristina Adam, Amparo Querol, Eladio Barrio, Christina Toft
Software Mentions: 2
Published: about 4 years ago

10.1186/s12864-017-4215-3

IL-17 signalling restructures the nasal microbiome and drives dynamic changes following Streptococcus pneumoniae colonization
Cited by: 12
Author(s): Neil D. Ritchie, Umer Zeeshan Ijaz, Tom Evans
Software Mentions: 2
Published: about 7 years ago

10.3390/v12101187

A Systematic Evaluation of High-Throughput Sequencing Approaches to Identify Low-Frequency Single Nucleotide Variants in Viral Populations
Cited by: 7
Author(s): David J. King, Graham Freimanis, Lidia Lasecka-Dykes, Amin S. Asfor, Paolo Ribeca, Ryan Waters, Donald P. King, Emma Laing
Software Mentions: 2
Published: about 4 years ago

10.1186/s42523-021-00078-4

The dysbiosis of ovine foot microbiome during the development and treatment of contagious ovine digital dermatitis
Cited by: 16
Author(s): Jennifer Duncan, Joseph W. Angell, Peter Richards, Luca Lenzi, Gareth J. Staton, Dai Grove‐White, Simon R. Clegg, Georgios Oikonomou, Stuart Carter, Nicholas J. Evans
Software Mentions: 2
Published: almost 4 years ago

10.3390/v11111023

Investigating the Cellular Transcriptomic Response Induced by the Makona Variant of Ebola Virus in Differentiated THP-1 Cells
Cited by: 5
Author(s): Andrew Bosworth, Stuart Dowall, Stuart D. Armstrong, Xuan Li, Xiaofeng Dong, Christine Bruce, Lisa F. P. Ng, Miles W. Carroll, Roger Hewson, Julian A. Hiscox
Software Mentions: 2
Published: about 5 years ago

10.1007/s10142-020-00752-x

Comparative transcriptomic analysis reveals the mechanistic basis of Pib-mediated broad spectrum resistance against Magnaporthe oryzae
Cited by: 3
Author(s): Jian Qiu, Feifei Lu, Min Xiong, Shuai Meng, Xiangqian Shen, Yanjun Kou
Software Mentions: 2
Published: about 4 years ago

10.1186/s12859-017-1724-7

An improved filtering algorithm for big read datasets and its application to single-cell assembly
Cited by: 13
Author(s): Axel Wedemeyer, Lasse Kliemann, Anand Srivastav, Christian Schielke, Thorsten B. H. Reusch, Philip Rosenstiel
Software Mentions: 2
Published: over 7 years ago

10.1007/s10142-017-0585-5

A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice
Cited by: 17
Author(s): Sezgi Biyiklioglu, Burcu Alptekin, Bala Anı Akpınar, Andrea C. Varella, Megan L. Hofland, David K. Weaver, Brian Bothner, Hikmet Budak
Software Mentions: 2
Published: almost 7 years ago

10.1099/mgen.0.000285

Large-scale and significant expression from pseudogenes in Sodalis glossinidius – a facultative bacterial endosymbiont
Cited by: 11
Author(s): Ian Goodhead, Frances Blow, Philip Brownridge, Margaret Hughes, John Kenny, Ritesh Krishna, Lynn McLean, Pisut Pongchaikul, Robert J. Beynon, Alistair C. Darby
Software Mentions: 2
Published: almost 5 years ago

10.3389/fvets.2019.00201

Development of the Caecal Microbiota in Three Broiler Breeds
Cited by: 68
Author(s): Peter Richards, Joanne L. Fothergill, Marion Bernardeau, Paul Wigley
Software Mentions: 2
Published: over 5 years ago

10.1099/mgen.0.000315

Next-generation sequencing of dsRNA is greatly improved by treatment with the inexpensive denaturing reagent DMSO
Cited by: 7
Author(s): Alexander H. Wilcox, Eric Delwart, Samuel L. Díaz‐Muñoz
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-017-3752-0

Genome-wide association study confirm major QTL for backfat fatty acid composition on SSC14 in Duroc pigs
Cited by: 25
Author(s): Maren van Son, Eli Gjerlaug Enger, Harald Grove, Roger Ros‐Freixedes, Matthew Kent, Sigbjørn Lien, Eli Grindflek
Software Mentions: 2
Published: over 7 years ago

10.3389/fvets.2019.00371

The Effect of Milk Replacer Composition on the Intestinal Microbiota of Pre-ruminant Dairy Calves
Cited by: 14
Author(s): James Badman, Kristian Daly, Jennifer Kelly, Andrew W. Moran, John Cameron, Ian Watson, J.R. Newbold, Soraya P. Shirazi-Beechey
Software Mentions: 2
Published: about 5 years ago

10.1007/s00438-017-1401-6

Mapping causal mutations by exome sequencing in a wheat TILLING population: a tall mutant case study
Cited by: 65
Author(s): Youngjun Mo, T. A. Howell, Hans Vasquez-Gross, Luis Alejandro de Haro, Jorge Dubcovsky, Stephen Pearce
Software Mentions: 2
Published: almost 7 years ago

10.1264/jsme2.ME16144

Diversity of Ktedonobacteria with Actinomycetes-Like Morphology in Terrestrial Environments
Cited by: 59
Author(s): Shuhei Yabe, Yasuteru Sakai, Keietsu Abe, Akira Yokota
Software Mentions: 2
Published: almost 8 years ago

10.1080/21505594.2021.1936768

A novel transcription factor UvCGBP1 regulates development and virulence of rice false smut fungus Ustilaginoidea virens
Cited by: 11
Author(s): Xiaoyang Chen, Pingping Li, Hao Líu, Xiaolin Chen, Junbin Huang, Chaoxi Luo, Guotian Li, Tom Hsiang, David B. Collinge, Lu Zheng
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-015-1376-9

SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines
Cited by: 4
Author(s): Wai Yi Leung, Tobias Marschall, Yogesh Paudel, Laurent Falquet, Hailiang Mei, Alexander Schönhuth, Tiffanie Yael Maoz
Software Mentions: 2
Published: over 9 years ago

10.1099/mgen.0.000272

Antibiotic resistomes of healthy pig faecal metagenomes
Cited by: 19
Author(s): Aoife Joyce, Charley G. P. McCarthy, Sinéad Murphy, Fiona Walsh
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2021.667678

Chia (Salvia hispanica) Gene Expression Atlas Elucidates Dynamic Spatio-Temporal Changes Associated With Plant Growth and Development
Cited by: 9
Author(s): Parul Gupta, Matthew Geniza, Sushma Naithani, Jeremy Phillips, Ebaad Haq, Pankaj Jaiswal
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2017.00553

Comprehensive Transcriptome Analyses Reveal Differential Gene Expression Profiles of Camellia sinensis Axillary Buds at Para-, Endo-, Ecodormancy, and Bud Flush Stages
Cited by: 62
Author(s): Xinyuan Hao, Yajun Yang, Chuan Yue, Lu Wang, David P. Horvath, Xinchao Wang
Software Mentions: 2
Published: over 7 years ago

10.1186/s13041-020-00591-8

Forebrain excitatory neuron-specific SENP2 knockout mouse displays hyperactivity, impaired learning and memory, and anxiolytic-like behavior
Cited by: 6
Author(s): Dehua Huang, Huiqing Liu, Aoxue Zhu, Yi Zhou, Yong Li
Software Mentions: 2
Published: over 4 years ago

10.1264/jsme2.ME21018

Nitrogen-fixing Ability and Nitrogen Fixation-related Genes of Thermophilic Fermentative Bacteria in the Genus Caldicellulosiruptor
Cited by: 13
Author(s): Yuxin Chen, Arisa Nishihara, Shin Haruta
Software Mentions: 2
Published: almost 4 years ago

10.1093/molbev/msab121

Asexuality Associated with Marked Genomic Expansion of Tandemly Repeated rRNA and Histone Genes
Cited by: 8
Author(s): Kyle E. McElroy, Stefan Müller, Dunja K. Lamatsch, Laura Bankers, Peter D. Fields, Joseph Jalinsky, Joel Sharbrough, Jeffrey L. Boore, John M. Logsdon, Maurine Neiman
Software Mentions: 2
Published: over 3 years ago

10.1007/s00248-018-1270-5

Comamonadaceae OTU as a Remnant of an Ancient Microbial Community in Sulfidic Waters
Cited by: 19
Author(s): Edyta Deja-Sikora, Marcin Gołębiewski, Agnieszka Kalwasińska, Arkadiusz Krawiec, Przemysław Kosobucki, Maciej Walczak
Software Mentions: 2
Published: about 6 years ago

10.3390/ani10122246

Growth, Metabolite, Antioxidative Capacity, Transcriptome, and the Metabolome Response to Dietary Choline Chloride in Pacific White Shrimp Litopenaeus vannamei
Cited by: 14
Author(s): Maoxian Huang, Hongxing Lin, Chang Xu, Qiuran Yu, Xiaodan Wang, Jianguang Qin, Liqiao Chen, Fenglu Han, Erchao Li
Software Mentions: 2
Published: almost 4 years ago

10.3389/fphys.2018.00812

Transcriptional and Translational Relationship in Environmental Stress: RNAseq and ITRAQ Proteomic Analysis Between Sexually Reproducing and Parthenogenetic Females in Moina micrura
Cited by: 14
Author(s): Jingyi Jia, Xiangjiang Liu, Lü Li, Lei Chen, Ying Dong, Guoqiang Wu, Guangfu Hu
Software Mentions: 2
Published: over 6 years ago

10.3389/fphys.2018.01833

A Phylogenomic Framework and Divergence History of Cephalochordata Amphioxus
Cited by: 11
Author(s): Qilin Zhang, Guanling Zhang, Ming Yüan, Zhi-Xiang Dong, Hongwei Li, Jun Guo, Feng Wang, Xian-Yu Deng, Jun-Yuan Chen, Lin Lü
Software Mentions: 2
Published: almost 6 years ago

10.1111/1751-7915.12728

LdtR is a master regulator of gene expression in <scp>L</scp> iberibacter asiaticus 
Cited by: 15
Author(s): Fernando A. Pagliai, Janelle F. Coyle, Sharan Kapoor, Claudio F. González, Graciela L. Lorca
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.01588

The Isolation and Genome Sequencing of Five Novel Bacteriophages From the Rumen Active Against Butyrivibrio fibrisolvens
Cited by: 3
Author(s): Jessica C. A. Friedersdorff, Alison H. Kingston‐Smith, Justin A. Pachebat, Alan Cookson, David Rooke, Christopher J. Creevey
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2020.00286

Identification of Persistent Sulfidogenic Bacteria in Shale Gas Produced Waters
Cited by: 11
Author(s): Lisa Cliffe, Sophie L. Nixon, Rebecca A. Daly, Bob Eden, Kevin G. Taylor, Christopher Boothman, Michael J. Wilkins, Kelly Wrighton, Jonathan R. Lloyd
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12864-019-5961-1

Transcriptome profiling of Gerbera hybrida reveals that stem bending is caused by water stress and regulation of abscisic acid
Cited by: 12
Author(s): Yafei Ge, Qixian Lai, Ping Luo, Xiaojing Liu, Wen Chen
Software Mentions: 2
Published: over 5 years ago

10.3389/fvets.2020.00017

Development of the Ileal Microbiota in Three Broiler Breeds
Cited by: 51
Author(s): Peter Richards, Joanne L. Fothergill, Marion Bernardeau, Paul Wigley
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2021.656306

Genomic Analysis of Antibiotic-Resistant Staphylococcus epidermidis Isolates From Clinical Sources in the Kwazulu-Natal Province, South Africa
Cited by: 9
Author(s): Jonathan Asante, Bakoena Ashton Hetsa, Daniel G. Amoako, Akebe Luther King Abia, Linda A. Bester, Sabiha Y. Essack
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2164-15-313

De novo genome assembly of the soil-borne fungus and tomato pathogen Pyrenochaeta lycopersici
Cited by: 28
Author(s): Maria Aragona, Andrea Minio, Alberto Ferrarini, Maria Teresa Valente, Paolo Bagnaresi, Luigi Orrù, Paola Tononi, Gianpiero Zamperin, A. Infantino, Giampiero Valè, Luigi Cattivelli, Massimo Delledonne
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2014.00678

Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes
Cited by: 220
Author(s): Austin G. Davis-Richardson, Alexandria N. Ardissone, Raquel Dias, Ville Simell, Michael T. Leonard, Kaisa Kemppainen, Jennifer C. Drew, Desmond Schatz, Mark A. Atkinson, Bryan Kolaczkowski, Jorma Ilonen, Mikael Knip, Jorma Toppari, Noora Nurminen, Heikki Hyöty, Riitta Veijola, Tuula Simell, Juha Mykkänen, Olli Simell, Eric W. Triplett
Software Mentions: 2
Published: almost 10 years ago

10.3390/md19040217

Transcriptome Analysis Reveals Possible Immunomodulatory Activity Mechanism of Chlorella sp. Exopolysaccharides on RAW264.7 Macrophages
Cited by: 2
Author(s): Siwei Wu, Hongquan Liu, Siyu Li, Han Sun, Xiumiao He, Ying Huang, Liang Han
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2019.00928

Candidate Phyla Radiation Roizmanbacteria From Hot Springs Have Novel and Unexpectedly Abundant CRISPR-Cas Systems
Cited by: 34
Author(s): Lin-Xing Chen, Basem Al-Shayeb, Raphaël Méheust, Wenjun Li, Jennifer A. Doudna, Jillian F. Banfield
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.00214

Characterization of Asymptomatic Bacteriuria Escherichia coli Isolates in Search of Alternative Strains for Efficient Bacterial Interference against Uropathogens
Cited by: 21
Author(s): Christoph Stork, Beáta Kovács, Barnabás Rózsai, Johannes Putze, Matthias Kiel, Ágnes Dorn, Judit Kovács, Szilvia Melegh, Andreas Leimbach, Tamás Kovács, G. Schneider, Mónika Kerényi, Levente Emődy, Ulrich Dobrindt
Software Mentions: 2
Published: almost 7 years ago

10.3390/ani10081375

Genetic Diversity and Genetic Structure of the Wild Tsushima Leopard Cat from Genome-Wide Analysis
Cited by: 10
Author(s): Hideyuki Itô, Nobuyoshi Nakajima, Manabu Onuma, Miho Matsushima
Software Mentions: 2
Published: over 4 years ago

10.3390/microorganisms8091281

Composition and Metabolic Functions of the Microbiome in Fermented Grain during Light-Flavor Baijiu Fermentation
Cited by: 41
Author(s): Xiaoning Huang, Yu Fan, Ting Lu, Junmei Kang, Xiao-Na Pang, Bei‐Zhong Han, Jing Yu Chen
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2019.01258

Presence, Diversity, and Enrichment of Respiratory Reductive Dehalogenase and Non-respiratory Hydrolytic and Oxidative Dehalogenase Genes in Terrestrial Environments
Cited by: 17
Author(s): Hanna R. Temme, Aaron Carlson, Paige J. Novak
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms7090358

A Discovery of Relevant Hepatoprotective Effects and Underlying Mechanisms of Dietary Clostridium butyricum Against Corticosterone-Induced Liver Injury in Pekin Ducks
Cited by: 8
Author(s): Yanhan Liu, Cun Liu, Liqing Huang, Zhaofei Xia
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.02004

Taxonomy, Diet, and Developmental Stage Contribute to the Structuring of Gut-Associated Bacterial Communities in Tephritid Pest Species
Cited by: 24
Author(s): Antonios A. Augustinos, George Tsiamis, Carlos Cáceres, Adly M. M. Abd-Alla, Kostas Bourtzis
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2021.642125

Comparative Genomics of Emerging Lineages and Mobile Resistomes of Contemporary Broiler Strains of Salmonella Infantis and E. coli
Cited by: 6
Author(s): Ama Szmolka, Haleluya Wami, Ulrich Dobrindt
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-015-2161-5

Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype
Cited by: 49
Author(s): Aris Ilias, Jacques Lagnel, Despoina Evripidis Kapantaidaki, Emmanouil Roditakis, Costas S. Tsigenopoulos, John Vontas, Anastasia Tsagkarakou
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2020.570825

Data-Driven Modeling for Species-Level Taxonomic Assignment From 16S rRNA: Application to Human Microbiomes
Cited by: 11
Author(s): Ho Jin Gwak, Mina Rho
Software Mentions: 2
Published: about 4 years ago

10.1186/s13068-021-01933-x

Transcriptome-based analysis of the effects of salicylic acid and high light on lipid and astaxanthin accumulation in Haematococcus pluvialis
Cited by: 20
Author(s): Qingping Hu, Danqiong Huang, Anguo Li, Zhangli Hu, Zhengquan Gao, Yongli Yang, Chaogang Wang
Software Mentions: 2
Published: over 3 years ago

10.1186/s13068-021-01890-5

Investigation of carbon and energy metabolic mechanism of mixotrophy in Chromochloris zofingiensis
Cited by: 33
Author(s): Zhao Zhang, Dongzhe Sun, Ka‐Wing Cheng, Feng Chen
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2018.03009

Environmental DNA: A New Low-Cost Monitoring Tool for Pathogens in Salmonid Aquaculture
Cited by: 41
Author(s): Lucy Peters, Sofie Spatharis, Maria Augusta Dario, Toni Dwyer, Inaki J. T. Roca, Anna Kintner, Øyvind Kanstad-Hanssen, Martin S. Llewellyn, Kim Præbel
Software Mentions: 2
Published: almost 6 years ago

10.1002/aps3.1155

Finding the pond through the weeds: eDNA reveals underestimated diversity of pondweeds
Cited by: 20
Author(s): Maria L. Kuzmina, Thomas Braukmann, Evgeny Zakharov
Software Mentions: 2
Published: over 6 years ago

10.3390/ani11030755

A Comparison of the Colonic Microbiome and Volatile Organic Compound Metabolome of Anoplocephala perfoliata Infected and Non-Infected Horses: A Pilot Study
Cited by: 4
Author(s): Rachael Slater, Alessandra Frau, Jane E. Hodgkinson, Debra Archer, Chris Probert
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2020.573969

A Longitudinal Study of the Human Oropharynx Microbiota Over Time Reveals a Common Core and Significant Variations With Self-Reported Disease
Cited by: 8
Author(s): Lydia Luise Bach, Asha Ram, Umer Zeeshan Ijaz, Thomas J. Evans, Jan Lindström
Software Mentions: 2
Published: almost 4 years ago

10.1155/2020/9381506

Metagenomic Analysis Exploring Taxonomic and Functional Diversity of Soil Microbial Communities in Sugarcane Fields Applied with Organic Fertilizer
Cited by: 11
Author(s): Ruoyu Li, Ziqin Pang, Yongmei Zhou, Nyumah Fallah, Chaohua Hu, Wenxiong Lin, Zhaonian Yuan
Software Mentions: 2
Published: about 4 years ago

10.1186/s40168-020-0786-3

Increased replication of dissimilatory nitrate-reducing bacteria leads to decreased anammox bioreactor performance
Cited by: 39
Author(s): Ray Keren, Jennifer Lawrence, Wei-Qin Zhuang, David Jenkins, Jillian F. Banfield, Lisa Alvarez‐Cohen, Lijie Zhou, Ke Yu
Software Mentions: 2
Published: almost 5 years ago

10.3390/biology10060462

Metatranscriptomic Analysis Reveals an Imbalance of Hepatopancreatic Flora of Chinese Mitten Crab Eriocheir sinensis with Hepatopancreatic Necrosis Disease
Cited by: 10
Author(s): Zeen Shen, Dhiraj Kumar, Xunmeng Liu, Bingyu Yan, Ping Fang, Yuchao Gu, Manyun Li, Meiping Xie, Rui Yuan, Yongjie Feng, Xiaolong Hu, Guangwen Cao, Renyu Xue, Hui Chen, Xiaohan Liu, Chengliang Gong
Software Mentions: 2
Published: over 3 years ago

10.3390/biology10020092

A Model Construction of Starvation Induces Hepatic Steatosis and Transcriptome Analysis in Zebrafish Larvae
Cited by: 10
Author(s): Hao Xu, Jingquan Yu, Xiaomin Miao, Yixi Tao, Lang Xie, Yun Li
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-015-2095-y

The epigenetic processes of meiosis in male mice are broadly affected by the widely used herbicide atrazine
Cited by: 48
Author(s): Aurore Gély-Pernot, Chunxiang Hao, E. Becker, Igor Stuparević, Christine Kervarrec, Frédéric Chalmel, Michael Primig, Bernard Jégou, Fátima Smagulova
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2016.01546

Photosynthetic Versatility in the Genome of Geitlerinema sp. PCC 9228 (Formerly Oscillatoria limnetica ‘Solar Lake’), a Model Anoxygenic Photosynthetic Cyanobacterium
Cited by: 27
Author(s): Sharon L. Grim, Gregory J. Dick
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2021.627099

De novo Sequencing and Comparative Transcriptome Analyses Provide First Insights Into Polysaccharide Biosynthesis During Fruiting Body Development of Lentinula edodes
Cited by: 2
Author(s): Qiaozhen Li, Jing Chen, Jianyu Liu, Hailong Yu, Lujun Zhang, Chunyan Song, Li Yu, Ning Jiang, Qian Tan, Xiaodong Shang, Yunfu Gu
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2020.588410

Acinetobacter Plasmids: Diversity and Development of Classification Strategies
Cited by: 11
Author(s): S. Z. Mindlin, Alexey V. Beletsky, Andrey L. Rakitin, Andrey V. Mardanov, Mayya Petrova
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2017.00791

Novel Large Sulfur Bacteria in the Metagenomes of Groundwater-Fed Chemosynthetic Microbial Mats in the Lake Huron Basin
Cited by: 28
Author(s): Allison Sharrar, Beverly E. Flood, Jake V. Bailey, Daniel S. Jones, Bopaiah A. Biddanda, Steven A. Ruberg, Daniel N. Marcus, Gregory J. Dick
Software Mentions: 2
Published: over 7 years ago

10.3390/genes12030389

Filling the Gaps in the Cyanobacterial Tree of Life—Metagenome Analysis of Stigonema ocellatum DSM 106950, Chlorogloea purpurea SAG 13.99 and Gomphosphaeria aponina DSM 107014
Cited by: 5
Author(s): Pia Marter, Sixing Huang, Henner Brinkmann, Silke Pradella, Michael Jarek, Manfred Rohde, Boyke Bunk, Jörn Petersen
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-016-3280-3

Identification of genes for engineering the male germline of Aedes aegypti and Ceratitis capitata
Cited by: 6
Author(s): Elizabeth Sutton, Yiqiang Yu, Sebastian M. Shimeld, Helen White-Cooper, and Luke Alphey
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2020.568457

The Effect of Xylooligosaccharide, Xylan, and Whole Wheat Bran on the Human Gut Bacteria
Cited by: 8
Author(s): Miao Chen, Shujun Liu, Khandaker Md Sharif Uddin Imam, Lichao Sun, Yulu Wang, Tianyi Gu, Bin Wen, Fengjiao Xin
Software Mentions: 2
Published: almost 4 years ago

10.1128/MRA.00814-20

Complete Genome Sequence of Nitrogen-Fixing Paenibacillus sp. Strain URB8-2, Isolated from the Rhizosphere of Wild Grass
Cited by: 1
Author(s): Kyosuke Kita, Shu Ishikawa, Kenichi Yoshida
Software Mentions: 2
Published: about 4 years ago

10.1186/s12917-020-02707-7

Equine synovial fluid small non-coding RNA signatures in early osteoarthritis
Cited by: 16
Author(s): Catarina Castanheira, Panagiotis Balaskas, Charlotte Falls, Yalda Ashraf Kharaz, Peter Clegg, Kim Burke, Yongxiang Fang, Philip Dyer, Tim J. M. Welting, Mandy J. Peffers
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2018.01982

Genomic Insights Into the Acid Adaptation of Novel Methanotrophs Enriched From Acidic Forest Soils
Cited by: 21
Author(s): Ngoc‐Loi Nguyen, Woon-Jong Yu, Joo-Han Gwak, So-Jeong Kim, Soo-Je Park, Craig W. Herbold, Jong-Geol Kim, Man‐Young Jung, Sung‐Keun Rhee
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2021.653873

Detection of Virus-Related Sequences Associated With Potential Etiologies of Hepatitis in Liver Tissue Samples From Rats, Mice, Shrews, and Bats
Cited by: 9
Author(s): Wenqiao He, Yuhan Gao, Yiping Wen, Xuemei Ke, Zejin Ou, Yongzhi Li, Huan He, Qing Chen
Software Mentions: 2
Published: over 3 years ago

10.3390/ani11072132

Screening Candidate Genes Regulating Placental Development from Trophoblast Transcriptome at Early Pregnancy in Dazu Black Goats (Capra hircus)
Cited by: 8
Author(s): Nanjian Luo, Wenqiang Cheng, Yumei Zhou, Bowen Gu, Zhongquan Zhao, Yongju Zhao
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-017-4379-x

De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species
Cited by: 58
Author(s): Madeleine Carruthers, Andrey A. Yurchenko, Julian J. Augley, Colin E. Adams, Paweł Herzyk, Kathryn R. Elmer
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2015.00716

H2O2 production rate in Lactobacillus johnsonii is modulated via the interplay of a heterodimeric flavin oxidoreductase with a soluble 28 Kd PAS domain containing protein
Cited by: 12
Author(s): Ricardo Valladares, Christina Graves, Kaitlyn Wright, C. L. Gardner, Graciela L. Lorca, Claudio F. González
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2020.563885

Evolutionary Rescue of an Environmental Pseudomonas otitidis in Response to Anthropogenic Perturbation
Cited by: 4
Author(s): Manuel Ii García-Ulloa, Ana E. Escalante, Alejandra Moreno‐Letelier, Luis E. Eguiarte, Valeria Souza
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12870-015-0692-1

WheatExp: an RNA-seq expression database for polyploid wheat
Cited by: 100
Author(s): Stephen Pearce, Hans Vazquez-Gross, Sayer Y. Herin, David L. Hane, Yi Wang, Yong Gu, Jorge Dubcovsky
Software Mentions: 2
Published: almost 9 years ago

Projects: pypi: Sickle

Papers Mentioning Sickle 740