Projects: pypi: PyMOL
https://packages.ecosyste.ms/registries/pypi.org/packages/PyMOL
1 version
Latest release: almost 3 years ago
5 dependent packages
Science Score: 90/100
Starting Score: 100 points
Bonuses:
Penalties:
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-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (90)
Papers Mentioning PyMOL 8,266
10.1371/journal.pone.0134056
N-Terminal Coiled-Coil Structure of ATPase Subunits of 26S Proteasome Is Crucial for Proteasome FunctionCited by: 8
Author(s): Tomonao Inobe, Reiko Genmei
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0006163
Discovery of a Novel Prolactin in Non-Mammalian Vertebrates: Evolutionary Perspectives and Its Involvement in Teleost Retina DevelopmentCited by: 45
Author(s): Xigui Huang, Michelle Hui, Yun Liu, Don Yuen, Yong Zhang, Wood Yee Chan, Haoran Lin, Shuk Han Cheng, Christopher H. K. Cheng
Software Mentions: 1
Published: almost 17 years ago
10.1371/journal.pone.0231542
Unveiling functional motions based on point mutations in biased signaling systems: A normal mode study on nerve growth factor bound to TrkACited by: 5
Author(s): Pedro T. Resende-Lara, David Pérahia, Ana Lígia Scott, Antônio Sérgio Kimus Braz
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0154056
New Cysteine-Rich Ice-Binding Protein Secreted from Antarctic Microalga, Chloromonas sp.Cited by: 17
Author(s): Woo‐Sik Jung, Robert L. Campbell, Yunho Gwak, Jong Im Kim, Peter L. Davies, EonSeon Jin
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0086083
Critical Amino Acids within the Human Immunodeficiency Virus Type 1 Envelope Glycoprotein V4 N- and C-Terminals Contribute to Virus EntryCited by: 12
Author(s): Yan Li, Dan Yang, Jiaye Wang, Yuan Yao, Weizhe Zhang, Lu-Jing Wang, De Cheng, Fengkun Yang, Fengmin Zhang, Min Zhuang, Hong Ling
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0033291
Characterization of a Novel Binding Protein for Fortilin/TCTP — Component of a Defense Mechanism against Viral Infection in Penaeus monodonCited by: 8
Author(s): Tanate Panrat, Patuma Sinthujaroen, Benjamas Nupan, Warapond Wanna, Martti T. Tammi, Amornrat Phongdara
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0100165
Insulin-Like Growth Factor 2 Silencing Restores Taxol Sensitivity in Drug Resistant Ovarian CancerCited by: 33
Author(s): Jurriaan Brouwer‐Visser, Jiyeon Lee, Kelly Anne McCullagh, M. Cossio, Yanhua Wang, Gloria S. Huang
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0146393
PLGA-Curcumin Attenuates Opioid-Induced Hyperalgesia and Inhibits Spinal CaMKIIαCited by: 16
Author(s): Xiaoyu Hu, Fang Huang, Magdalena Szymusiak, Xiaojing Tian, Ying Liu, Zaijie Jim Wang
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0156218
Crystal Structure of the FERM-SH2 Module of Human Jak2Cited by: 30
Author(s): Randall McNally, A.V. Toms, Michael J. Eck
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0135448
Structural Analysis of the Rubisco-Assembly Chaperone RbcX-II from Chlamydomonas reinhardtiiCited by: 13
Author(s): A. Bracher, Thomas R. Hauser, Cuimin Liu, F. Ulrich Hartl, Manajit Hayer‐Hartl
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0007258
Masitinib (AB1010), a Potent and Selective Tyrosine Kinase Inhibitor Targeting KITCited by: 329
Author(s): Patrice Dubreuil, Sébastien Létard, Marco A. Ciufolini, Laurent Gros, M. Humbert, Nathalie Castéran, Laurence Borge, Bérengère Hajem, Anne Lermet, Wolfgang Sippl, Edwige Voisset, Michel Arock, Christian Auclair, Phillip S. Leventhal, Colin D. Mansfield, Alain Moussy, Olivier Hermine
Software Mentions: 1
Published: almost 17 years ago
10.1371/journal.pone.0012029
Optimized Hydrophobic Interactions and Hydrogen Bonding at the Target-Ligand Interface Leads the Pathways of Drug-DesigningCited by: 313
Author(s): R. R. Patil, S. Das, Ashley Stanley, Lumbani Yadav, Akulapalli Sudhakar, Ashok K. Varma
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0060602
Mapping Enzymatic Catalysis Using the Effective Fragment Molecular Orbital Method: Towards all ab initio BiochemistryCited by: 33
Author(s): Casper Steinmann, Dmitri G. Fedorov, Jan H. Jensen
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0179983
Generation of a rabbit single-chain fragment variable (scFv) antibody for specific detection of Bradyrhizobium sp. DOA9 in both free-living and bacteroid formsCited by: 8
Author(s): Nguyễn Xuân Vũ, Natcha Pruksametanan, Witsanu Srila, Watcharin Yuttavanichakul, Kamonluck Teamtisong, Neung Teaumroong, Nantakorn Boonkerd, Panlada Tittabutr, Montarop Yamabhai
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0109354
BioGPS Descriptors for Rational Engineering of Enzyme Promiscuity and Structure Based Bioinformatic AnalysisCited by: 17
Author(s): Virgilio F. Ferrario, Lydia Siragusa, Cynthia Ebert, Massimo Baroni, Marco Foscato, Gabriele Cruciani, Lucia Gardossi
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0017055
Histidine Hydrogen-Deuterium Exchange Mass Spectrometry for Probing the Microenvironment of Histidine Residues in Dihydrofolate ReductaseCited by: 28
Author(s): Masaru Miyagi, Qun Wan, Md. Faiz Ahmad, Giridharan Gokulrangan, Sara E. Tomechko, Brad C. Bennett, Chris Dealwis
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0113294
Design and Development of a Novel Vaccine for Protection against Lyme BorreliosisCited by: 45
Author(s): Pär Comstedt, Markus Hanner, Wolfgang Schüler, Andreas Meinke, Urban Lundberg
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0018300
Biochemical and Structural Properties of Cyanases from Arabidopsis thaliana and Oryza sativaCited by: 27
Author(s): Dawei Qian, Lin Jiang, Lu Lu, Chunhong Wei, Li Yi
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0043788
Atomistic Mechanism of MicroRNA Translation Upregulation via Molecular Dynamics SimulationsCited by: 14
Author(s): Yaguang Wei, Fang Qin, Jian Zhang, Ray Luo, Haifeng Chen
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0075582
Putative Bioactive Motif of Tritrpticin Revealed by an Antibody with Biological Receptor-Like PropertiesCited by: 8
Author(s): Raghava Sharma, Suvendu Lomash, Dinakar M. Salunke
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0108946
Structural Insights into RNA Polymerase Recognition and Essential Function of Myxococcus xanthus CdnLCited by: 18
Author(s): Aránzazu Gallego-García, Yasmina Mirassou, Diana García‐Moreno, Montserrat Elı́as-Arnanz, María Ángeles Sánchez Jiménez, S. Padmanabhan
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0241728
PharmaNet: Pharmaceutical discovery with deep recurrent neural networksCited by: 5
Author(s): Paola Ruiz Puentes, Natalia Valderrama, Cristina González, Laura Daza, Carolina Muñoz-Camargo, Juan C. Cruz, Pablo Arbeláez
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0020872
Anchored Design of Protein-Protein InterfacesCited by: 59
Author(s): Steven M. Lewis, Brian Kuhlman
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pone.0119608
Glycans Flanking the Hypervariable Connecting Peptide between the A and B Strands of the V1/V2 Domain of HIV-1 gp120 Confer Resistance to Antibodies That Neutralize CRF01_AE VirusesCited by: 14
Author(s): Sara M. O’Rourke, Ruengpung Sutthent, Pham Phung, Kathryn A. Mesa, Normand L. Frigon, Briana To, Navin Horthongkham, Kay Limoli, Terri Wrin, Phillip W. Berman
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0223773
Engineering a single-chain antibody against Trypanosoma cruzi metacyclic trypomastigotes to block cell invasionCited by: 4
Author(s): Lara Maria Kalempa Demeu, Rodrigo Jahn Soares, Juliana Severo Miranda, Lisandro Pacheco-Lugo, Kelin Gonçalves de Oliveira, Cristian Andrés Cortez Plaza, Philippe Billiald, Juliana de Moura, Nobuko Yoshida, Larissa M. Alvarenga, Wanderson D. DaRocha
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0096536
The Tertiary Origin of the Allosteric Activation of E. coli Glucosamine-6-Phosphate Deaminase Studied by Sol-Gel Nanoencapsulation of Its T ConformerCited by: 4
Author(s): Sergio Zonszein, Laura I. Álvarez‐Añorve, Roberto J. Vázquez-Núñez, Mario L. Calcagno
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0201922
Structures of NHBA elucidate a broadly conserved epitope identified by a vaccine induced antibodyCited by: 5
Author(s): Martina Maritan, Daniele Veggi, Roberta Cozzi, Lucia Dello Iacono, Erika Bartolini, Paola Lo Surdo, Giulietta Maruggi, Glen Spraggon, Matthew J. Bottomley, E. Malito
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0024766
Modulation of Catalytic Activity in Multi-Domain Protein Tyrosine PhosphatasesCited by: 12
Author(s): L.L. Madan, Shivamurthy Veeranna, Khader Shameer, Chilamakuri Chandra Sekhar Reddy, Ramanathan Sowdhamini, B. Gopal
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0025118
Comparative Analysis of Species-Specific Ligand Recognition in Toll-Like Receptor 8 Signaling: A HypothesisCited by: 47
Author(s): Rajiv Gandhi Govindaraj, Balachandran Manavalan, Shaherin Basith, Sangdun Choi
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0082020
Conformational Polymorphism of m7GTP in Crystal Structure of the PB2 Middle Domain from Human Influenza A VirusCited by: 8
Author(s): Toshiharu Tsurumura, Hao Qiu, Toru Yoshida, Yayoi Tsumori, Dai Hatakeyama, Takashi Kuzuhara, Hideaki Tsuge
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0065045
Transient Oligomerization of the SARS-CoV N Protein – Implication for Virus Ribonucleoprotein PackagingCited by: 100
Author(s): Chung-ke Chang, Chia Min Michael Chen, Ming Hui Chiang, Yen Lan Hsu, Tai Huang Huang
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0043863
Crystal Structures of Archaemetzincin Reveal a Moldable Substrate-Binding SiteCited by: 4
Author(s): Christine Graef, M. Schacherl, S. Waltersperger, Ulrich Baumann
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0025317
Obesity Risk Gene TMEM18 Encodes a Sequence-Specific DNA-Binding ProteinCited by: 28
Author(s): Jaana Jurvansuu, Adrian Goldman
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0009990
Detection and Architecture of Small Heat Shock Protein MonomersCited by: 76
Author(s): Pierre Poulain, Jean‐Christophe Gelly, Delphine Flatters
Software Mentions: 1
Published: about 16 years ago
10.1371/journal.pone.0173767
Streptococcus suis sortase A is Ca2+ independent and is inhibited by acteoside, isoquercitrin and baicalinCited by: 8
Author(s): Fuguang Chen, Fang Xie, Baoxue Yang, Yuming Wang, Siguo Liu, Yueling Zhang
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0237181
Comprehensive genome based analysis of Vibrio parahaemolyticus for identifying novel drug and vaccine molecules: Subtractive proteomics and vaccinomics approachCited by: 14
Author(s): Mahmudul Hasan, Kazi Faizul Azim, Abdus Shukur Imran, Ishtiak Malique Chowdhury, Shah Rucksana Akhter Urme, Sorwer Alam Parvez, Md. Bashir Uddin, Syed Sayeem Uddin Ahmed
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0043437
Random Mutagenesis Reveals Residues of JAK2 Critical in Evading Inhibition by a Tyrosine Kinase InhibitorCited by: 23
Author(s): Michael R. Marit, Manprit Chohan, Natasha Matthew, Kai Huang, D.A. Kuntz, David R. Rose, Dwayne L. Barber
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0052732
Prime-Boost Immunization of Rabbits with HIV-1 gp120 Elicits Potent Neutralization Activity against a Primary Viral IsolateCited by: 16
Author(s): Kristin Narayan, Nitish Agrawal, Sean X. Du, Janelle Muranaka, Katherine W. Bauer, Daniel P. Leaman, Pham Phung, Kay Limoli, Helen Chen, Rebecca I. Boenig, Terri Wrin, Michael B. Zwick, Robert G. Whalen
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0123567
Crystal Structure of Plasmodium knowlesi Apical Membrane Antigen 1 and Its Complex with an Invasion-Inhibitory Monoclonal AntibodyCited by: 15
Author(s): B. Vulliez-Le Normand, Bart W. Faber, F.A. Saul, Marjolein van der Eijk, Alan W. Thomas, Balbir Singh, Clemens H. M. Kocken, G.A. Bentley
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0089116
Structural Analysis of Viral Infectivity Factor of HIV Type 1 and Its Interaction with A3G, EloC and EloBCited by: 16
Author(s): Kauȇ Santana da Costa, Élcio Leal, Alberto Monteiro dos Santos, Anderson Henrique Lima e Lima, Cláudio Nahum Alves, Jerônimo Lameira
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0149903
Structure of the Response Regulator NsrR from Streptococcus agalactiae, Which Is Involved in Lantibiotic ResistanceCited by: 12
Author(s): Sakshi Khosa, A. Hoeppner, Holger Gohlke, Lutz Schmitt, Sander H. J. Smits
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0100797
QSAR and Docking Studies on Capsazepine Derivatives for Immunomodulatory and Anti-Inflammatory ActivityCited by: 30
Author(s): Aparna Shukla, Pooja Sharma, Om Prakash, Mohinder Singh, Komal Kalani, Feroz Khan, Dnyaneshwar Umrao Bawankule, Suaib Luqman, Santosh K. Srivastava
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0223387
Structural mechanism for regulation of DNA binding of BpsR, a Bordetella regulator of biofilm formation, by 6-hydroxynicotinic acidCited by: 5
Author(s): William T. Booth, Ryan R. Davis, Rajendar Deora, Thomas Hollis
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0047665
The Metagenome-Derived Enzymes LipS and LipT Increase the Diversity of Known LipasesCited by: 73
Author(s): Jennifer Chow, Filip Kovačić, Yuliya Dall Antonia, Ulrich Krauß, Francesco Fersini, Christel Schmeisser, Benjamin Lauinger, Patrick Bongen, Jörg Pietruszka, Marlen Schmidt, Ina Menyes, Uwe T. Bornscheuer, Marrit Eckstein, Oliver Thum, Andreas Liese, Jochen Mueller‐Dieckmann, Karl‐Erich Jaeger, Wolfgang R. Streit
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0080393
Involvement of and Interaction between WNT10A and EDA Mutations in Tooth Agenesis Cases in the Chinese PopulationCited by: 48
Author(s): Huiying He, Dong Han, Hailan Feng, Hong Qu, Seng Song, Baojing Bai, Zhenting Zhang
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0040846
Prediction of Carbohydrate Binding Sites on Protein Surfaces with 3-Dimensional Probability Density Distributions of Interacting AtomsCited by: 25
Author(s): Keng‐Chang Tsai, Jhih-Wei Jian, Ei-Wen Yang, Po-Chiang Hsu, Hung-Pin Peng, Ching-Tai Chen, Jun‐Bo Chen, Jeng-Yih Chang, Wen-Lian Hsu, An-Suei Yang
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0033416
Crystal Structure of Diedel, a Marker of the Immune Response of Drosophila melanogasterCited by: 17
Author(s): Franck Coste, Cordula Kemp, Vanessa Bobezeau, Charles Hétru, Christine Kellenberger, Jean‐Luc Imler, Alain Roussel
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0055650
Characterization of the N-Terminal Domain of BteA: A Bordetella Type III Secreted Cytotoxic EffectorCited by: 5
Author(s): Chen Guttman, Geula Davidov, Hadassa Shaked, Sofiya Kolusheva, Ronit Bitton, Atish Ganguly, Jeff F. Miller, Jordan H. Chill, Raz Zarivach
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0022253
Single-Molecule Fluorescence Polarization Study of Conformational Change in Archaeal Group II ChaperoninCited by: 7
Author(s): Ryo Iizuka, Taro Ueno, Nobuhiro Morone, Takashi Funatsu
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0000685
Mutations in the UBIAD1 Gene, Encoding a Potential Prenyltransferase, Are Causal for Schnyder Crystalline Corneal DystrophyCited by: 104
Author(s): Andrew Orr, Marie‐Pierre Dubé, Julien L. Marcadier, Haiyan Jiang, Antonio Federico, Stanley George, Christopher Seamone, David Q. Andrews, Paul Dubord, Simon Holland, Sylvie Provost, Vanessa Mongrain, Susan C. Evans, Brent Higgins, Sharen Bowman, Duane L. Guernsey, Mark E. Samuels
Software Mentions: 1
Published: almost 19 years ago
10.1371/journal.pone.0037645
Protein Sequence Alignment Analysis by Local Covariation: Coevolution Statistics Detect Benchmark Alignment ErrorsCited by: 19
Author(s): Russell J. Dickson, Gregory B. Gloor
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0180241
Metal ion coordination in the E. coli Nudix hydrolase dihydroneopterin triphosphate pyrophosphatase: New clues into catalytic mechanismCited by: 4
Author(s): Shannon E. Hill, Elaine Nguyen, Chiamaka U. Ukachukwu, Dana M. Freeman, Stephen Quirk, Raquel L. Lieberman
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0162273
GNAI3: Another Candidate Gene to Screen in Persons with Ocular AlbinismCited by: 3
Author(s): Alejandra Young, Uma Dandekar, Calvin Pan, Avery Sader, Jie Zheng, Richard A. Lewis, Débora B. Farber
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0031445
Protein-Protein Interactions in Clathrin Vesicular Assembly: Radial Distribution of Evolutionary Constraints in InterfacesCited by: 1
Author(s): Rupali A. Gadkari, Narayanaswamy Srinivasan
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0079544
New Antimalarial Hits from Dacryodes edulis (Burseraceae) - Part I: Isolation, In Vitro Activity, In Silico “drug-likeness” and Pharmacokinetic ProfilesCited by: 27
Author(s): Denis Zofou, Esther Laure Tematio, Fidele Ntie‐Kang, Mathieu Téné, Moses N. Ngemenya, Pierre Tane, Vincent P. K. Titanji
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0112902
Identification of Functionally Important Residues of the Rat P2X4 Receptor by Alanine Scanning Mutagenesis of the Dorsal Fin and Left Flipper DomainsCited by: 9
Author(s): Vendula Tvrdoňová, Milos B. Rokic, Stanko S. Stojilković, Hana Zemková
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0240920
A highly active heparinase I from Bacteroides cellulosilyticus: Cloning, high level expression, and molecular characterizationCited by: 4
Author(s): Liwei Gao, Hongtao Zhu, Caiyun Liu, Zhixiang Lv, Xue‐Gong Fan, Ye-Wang Zhang
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0074636
Frequency and Pattern of Heteroplasmy in the Complete Human Mitochondrial GenomeCited by: 71
Author(s): Ariel Delgado Ramos, Cristina Santos, Ligia Mateiu, María del Mar González, Luis Álvarez, Luı́sa Azevedo, António Amorim, María Pilar Aluja
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0072718
NMR Structure of Temporin-1 Ta in Lipopolysaccharide Micelles: Mechanistic Insight into Inactivation by Outer MembraneCited by: 30
Author(s): Rathi Saravanan, M. S. Joshi, Harini Mohanram, Anirban Bhunia, Maria Luisa Mangoni, Surajit Bhattacharjya
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0229077
Novel EGFR ectodomain mutations associated with ligand-independent activation and cetuximab resistance in head and neck cancerCited by: 12
Author(s): Sindhu Nair, Hoa Q. Trummell, Rajani Rajbhandari, Nanda K. Thudi, Susan E. Nozell, Jason M. Warram, Christopher D. Willey, Eddy S. Yang, William J. Placzek, James A. Bonner, Markus Bredel
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0087963
Structural Basis for Disparate Sugar-Binding Specificities in the Homologous Cargo Receptors ERGIC-53 and VIP36Cited by: 30
Author(s): Tadashi Satoh, K. Suzuki, Takumi Yamaguchi, Koichi Kato
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0195558
Membrane permeabilizing amphiphilic peptide delivers recombinant transcription factor and CRISPR-Cas9/Cpf1 ribonucleoproteins in hard-to-modify cellsCited by: 51
Author(s): Thomas Del’Guidice, Jean-Pascal Lepetit-Stoffaes, Louis-Jean Bordeleau, Jean Roberge, Vanessa Théberge, Coraline Lauvaux, Xavier Barbeau, Jessica Trottier, Vibhuti P. Davé, Denis‐Claude Roy, Bruno Gaillet, Alain Garnier, David R.P. Guay
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0123379
Structural Effects of Protein Aging: Terminal Marking by Deamidation in Human Triosephosphate IsomeraseCited by: 18
Author(s): Ignacio De la Mora-De la Mora, Alfredo Torres‐Larios, Sergio Enríquez-Flores, Sara T. Méndez, Adriana Castillo-Villanueva, Saúl Gómez-Manzo, Gabriel López-Velázquez, Jaime Marcial-Quino, Angélica Torres-Arroyo, Itzhel García-Torres, Horacio Reyes‐Vivas, Jesús Oria-Hernández
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0066542
Functional Characterization of the Cardiac Ryanodine Receptor Pore-Forming RegionCited by: 7
Author(s): Joanne Euden, Sammy A. Mason, Alan J. Williams
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0023245
Structural Analysis of the Essential Resuscitation Promoting Factor YeaZ Suggests a Mechanism of Nucleotide Regulation through Dimer ReorganizationCited by: 22
Author(s): Inci Aydin, Yumiko Saijo-Hamano, Keiichi Namba, Connor Thomas, Anna Roujeinikova
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0069228
Disruption of Hydrogen Bonds between Major Histocompatibility Complex Class II and the Peptide N-Terminus Is Not Sufficient to Form a Human Leukocyte Antigen-DM Receptive State of Major Histocompatibility Complex Class IICited by: 12
Author(s): Monika-Sarah E. D. Schulze, Anne-Kathrin Anders, Dhruv Sethi, Melissa Call
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0038709
Mycobacterium tuberculosis DosR Regulon Gene Rv0079 Encodes a Putative, ‘Dormancy Associated Translation Inhibitor (DATIN)’Cited by: 28
Author(s): Ashutosh Kumar, Mohammad Majid, Ralph Kunisch, Pittu Sandhya Rani, Insaf Ahmed Qureshi, Astrid Lewin, Seyed E. Hasnain, Niyaz Ahmed
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0007295
Non-Hemagglutinating Flaviviruses: Molecular Mechanisms for the Emergence of New Strains via Adaptation to European TicksCited by: 45
Author(s): М. А. Хаснатинов, Katarína Ustaníková, Т. В. Фролова, В В Погодина, Н. Г. Бочкова, Л С Левина, Mirko Slovák, Mária Kazimírová, М Лабуда, Boris Klempa, E Elecková, Ernest A. Gould, Т.С. Грицун
Software Mentions: 1
Published: almost 17 years ago
10.1371/journal.pone.0256572
Human norovirus GII.4 Hong Kong variant shares common ancestry with GII.4 Osaka and emerged in Thailand in 2016Cited by: 1
Author(s): Watchaporn Chuchaona, Jira Chansaenroj, Jiratchaya Puenpa, Sarawut Khongwichit, Sumeth Korkong, Sompong Vongpunsawad, Yong Poovorawan
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0073782
Insights into the Cross-Immunity Mechanism within Effector Families of Bacteria Type VI Secretion System from the Structure of StTae4-EcTai4 ComplexCited by: 11
Author(s): H. Zhang, Zengqiang Gao, Yong Wei, Jianhua Xu, Yuhui Dong
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0028778
In silico Analysis of Conformational Changes Induced by Mutation of Aromatic Binding Residues: Consequences for Drug Binding in the hERG K+ ChannelCited by: 24
Author(s): Kirsten Knape, Tobias Linder, Peter Wolschann, Anton Beyer, Anna Stary-Weinzinger
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0048595
Functional and Structural Divergence of an Unusual LTR Retrotransposon Family in PlantsCited by: 12
Author(s): Dongying Gao, José Carlos Jiménez-López, Akihisa Iwata, Navdeep Gill, Scott A. Jackson
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0192661
Ligand binding modulates the structural dynamics and activity of urokinase-type plasminogen activator: A possible mechanism of plasminogen activationCited by: 3
Author(s): Tobias Kromann-Hansen, E.L. Lange, Ida Katrine Lund, Gunilla Høyer‐Hansen, Peter A. Andreasen, Elizabeth A. Komives
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0025246
Using Shifts in Amino Acid Frequency and Substitution Rate to Identify Latent Structural Characters in Base-Excision Repair EnzymesCited by: 1
Author(s): Ramiro Barrantes-Reynolds, Susan S. Wallace, Jeffrey P. Bond
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0048360
Structural Insight into the Clostridium difficile Ethanolamine Utilisation MicrocompartmentCited by: 51
Author(s): Alison C. Pitts, Laura Tuck, Alexandra Faulds-Pain, Richard J. Lewis, Jon Marles‐Wright
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0198010
Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classificationCited by: 9
Author(s): K. Fukano, K. Ozawa, Masaya Kokubu, Tetsu Shimizu, Shinsaku Ito, Yasuyuki Sasaki, Akira Nakamura, Seishi Yajima
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0171328
Evidence for disulfide bonds in SR Protein Kinase 1 (SRPK1) that are required for activity and nuclear localizationCited by: 18
Author(s): Maria Koutroumani, Γεώργιος Παπαδόπουλος, Metaxia Vlassi, Eleni Nikolakaki, Thomas Giannakouŕos
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0007838
Inhibition of Neuraminidase Inhibitor-Resistant Influenza Virus by DAS181, a Novel Sialidase Fusion ProteinCited by: 65
Author(s): Gallen Triana‐Baltzer, Larisa V. Gubareva, Alexander Klimov, David F. Wurtman, Ronald B. Moss, Maria Hedlund, Jeffrey Larson, Robert B. Belshe, Fang Fang
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pone.0192826
Computer simulations reveal changes in the conformational space of the transcriptional regulator MosR upon the formation of a disulphide bond and in the collective motions that regulate its DNA-binding affinityCited by: 5
Author(s): Amanda Souza Câmara, E. Horjales
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0013105
Insight into Antigenic Diversity of VAR2CSA-DBL5ε Domain from Multiple Plasmodium falciparum Placental IsolatesCited by: 18
Author(s): Sédami Gnidehou, Leon Eyrich Jessen, Stéphane Gangnard, Caroline Ermont, CHoukri Triqui, Mickäel Quiviger, Juliette Guitard, Ole Lund, Philippe Deloron, Nicaise Tuikue Ndam
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0014310
Co-Conserved Features Associated with cis Regulation of ErbB Tyrosine KinasesCited by: 14
Author(s): Asra Mirza, Morad Mustafa, Eric Talevich, Natarajan Kannan
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0096975
Structural Insights into the Evolution of a Sexy Protein: Novel Topology and Restricted Backbone Flexibility in a Hypervariable Pheromone from the Red-Legged Salamander, Plethodon shermaniCited by: 17
Author(s): Damien B. Wilburn, Kathleen E. Bowen, Kari A. Doty, Sengodagounder Arumugam, Andrew N. Lane, Pamela W. Feldhoff, Richard C. Feldhoff
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0027989
Impact of Host Cell Line Adaptation on Quasispecies Composition and Glycosylation of Influenza A Virus HemagglutininCited by: 41
Author(s): Jana Roedig, Erdmann Rapp, Dirk W. Höper, Yvonne Genzel, Udo Reichl
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0196918
Structural insights on the efficient catalysis of hydroperoxide reduction by Ohr: Crystallographic and molecular dynamics approachesCited by: 8
Author(s): Erika Piccirillo, Thiago Gerônimo Pires Alegria, Karen Fulan Discola, Jose A. R. R. Cussiol, Renato Mateus Domingos, Marcos Aurélio Farias de Oliveira, Leandro de Rezende, Luís Eduardo Soares Netto, Antonia T-do Amaral
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0132956
Folded or Not? Tracking Bet v 1 Conformation in Recombinant Allergen PreparationsCited by: 5
Author(s): Felix Husslik, Kay-Martin Hanschmann, Ariane Krämer, Christian Seutter von Loetzen, Kristian Schweimer, Iris Bellinghausen, Regina Treudler, Jan C. Simon, Lothar Vogel, Elke Völker, Stefanie Randow, Andreas Reuter, Paul Rösch, Stefan Vieths, Thomas Holzhauser, Dirk Schiller
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0066913
Identification of Residues Involved in Substrate Specificity and Cytotoxicity of Two Closely Related Cutinases from Mycobacterium tuberculosisCited by: 15
Author(s): Luc Dedieu, Carole Serveau-Avesque, Stéphane Canaan
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0058297
The N-terminal Helix Controls the Transition between the Soluble and Amyloid States of an FF DomainCited by: 16
Author(s): Virginia Leyva Castillo, Fabrizio Chiti, Salvador Ventura
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0062697
Crystal Structure of Human TWEAK in Complex with the Fab Fragment of a Neutralizing Antibody Reveals Insights into Receptor BindingCited by: 18
Author(s): Alfred Lammens, Monika Baehner, Ulrich Kohnert, Jens Niewoehner, Leopold von Proff, Michael Schraeml, Katja Lammens, Karl‐Peter Hopfner
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0021640
Crystal Structures of Histone and p53 Methyltransferase SmyD2 Reveal a Conformational Flexibility of the Autoinhibitory C-Terminal DomainCited by: 41
Author(s): Yuanyuan Jiang, Nualpun Sirinupong, J.S. Brunzelle, Zhe Yang
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pone.0160345
Generation and Characterization of an IgG4 Monomeric Fc PlatformCited by: 14
Author(s): Lu Shan, Magali Colazet, Kim Rosenthal, Xiang-Qing Yu, Jared S. Bee, Andrew D. Ferguson, Melissa Damschroder, Herren Wu, William F. Dall’Acqua, Ping Tsui, Vaheh Oganesyan
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0109521
Identification of a Novel Nucleocytoplasmic Shuttling RNA Helicase of TrypanosomesCited by: 14
Author(s): Alexandre Haruo Inoue, Mariana Serpeloni, Priscila Mazzocchi Hiraiwa, Sueli Fumie Yamada‐Ogatta, J.R.C. Muniz, María Cristina M. Motta, Newton Medeiros Vidal, Samuel Goldenberg, Andréa Rodrigues Ávila
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0187778
Substrate specificity of human metallocarboxypeptidase D: Comparison of the two active carboxypeptidase domainsCited by: 6
Author(s): Javier García-Pardo, Sebastián Tanco, Lucía Díaz, Sayani Dasgupta, Juan Fernández‐Recio, Júlia Lorenzo, Francesc X. Aviles, Lloyd D. Fricker
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0066211
An Experimental and Computational Evolution-Based Method to Study a Mode of Co-evolution of Overlapping Open Reading Frames in the AAV2 Viral GenomeCited by: 14
Author(s): Yasuhiro Kawano, Shane Neeley, Kei Adachi, Hiroyuki Nakai
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0043761
Structure of a Novel Winged-Helix Like Domain from Human NFRKB ProteinCited by: 6
Author(s): Abhinav Kumar, Sabine Möcklinghoff, Fumiaki Yumoto, Lukasz Jaroszewski, Carol L. Farr, Anna Grzechnik, Phuong Nguyen, Christian X. Weichenberger, Hsiu‐Ju Chiu, Heath E. Klock, Marc‐André Elsliger, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, Bruce R. Conklin, Robert J. Fletterick, Ian A. Wilson
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0149638
Immunisation With Immunodominant Linear B Cell Epitopes Vaccine of Manganese Transport Protein C Confers Protection against Staphylococcus aureus InfectionCited by: 18
Author(s): Hui-Jie Yang, Jinyong Zhang, Chao Wei, Liuyang Yang, Qiang Zuo, Yuan Zhuang, Youjun Feng, Swaminath Srinivas, Hao Zeng, Quanming Zou
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0161585
A Family of CSαβ Defensins and Defensin-Like Peptides from the Migratory Locust, Locusta migratoria, and Their Expression Dynamics during Mycosis and NosemosisCited by: 17
Author(s): Mingyue Lv, Amr A. Mohamed, Liwei Zhang, Pengfei Zhang, Long Zhang
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0168944
Inhibition of Helicobacter pylori and Its Associated Urease by Palmatine: Investigation on the Potential MechanismCited by: 49
Author(s): Jiangtao Zhou, Cai-Lan Li, Lihua Tan, Yifei Xu, Yuhong Liu, Zhi-Zhun Mo, Yao-Xing Dou, Rui Su, Zi‐Ren Su, Ping Huang, Jianhui Xie
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0080200
The ATP-Mediated Regulation of KaiB-KaiC Interaction in the Cyanobacterial Circadian ClockCited by: 39
Author(s): Risa Mutoh, Atsuhito Nishimura, So Yasui, Kiyoshi Onai, Masahiro Ishiura
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0168832
Structural and Catalytic Properties of S1 Nuclease from Aspergillus oryzae Responsible for Substrate Recognition, Cleavage, Non–Specificity, and InhibitionCited by: 15
Author(s): T. Kovaľ, Lars Østergaard, Jan Lehmbeck, Allan Nørgaard, Petra Lipovová, Jarmila Dušková, Tereza Skálová, Mária Trundová, Petr Kolenko, Karla Fejfarová, Jan Stránský, Leona Švecová, Jindřich Hašek, Jan Dohnálek
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0077054
Differences in the Binding Affinities of ErbB Family: Heterogeneity in the Prediction of Resistance MutantsCited by: 8
Author(s): Mariana Buongermino Pereira, Chandra Verma, Gloria Fuentes
Software Mentions: 1
Published: over 12 years ago