Ecosyste.ms: Papers

10.1371/journal.pone.0136509

Designing Second Generation Anti-Alzheimer Compounds as Inhibitors of Human Acetylcholinesterase: Computational Screening of Synthetic Molecules and Dietary Phytochemicals
Cited by: 24
Author(s): Hafsa Amat-ur-Rasool, Mehboob Ahmed
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0052848

A Novel B-Cell Epitope Identified within Mycobacterium tuberculosis CFP10/ESAT-6 Protein
Cited by: 11
Author(s): Hua Yang, Haizhen Chen, Liu Z, Hui Ma, Lianhua Qin, Ruiliang Jin, Ruijuan Zheng, Yonghong Feng, Zhenling Cui, Jie Wang, Jinming Liu, Zhongyi Hu
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0025365

Structural Insights into the Mechanism of Protein O-Fucosylation
Cited by: 84
Author(s): Erandi Lira‐Navarrete, Jessika Valero‐González, Raquel Villanueva, Marta Martínez‐Júlvez, Tomás Tejero, Pedro Merino, Santosh Panjikar, R. Hurtado‐Guerrero
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0020535

Construction of Chimeric Dual-Chain Avidin by Tandem Fusion of the Related Avidins
Cited by: 7
Author(s): Tiina A. Riihimäki, Sampo Kukkurainen, Suvi Varjonen, Jarno Hörhä, Thomas K.M. Nyholm, Markku S. Kulomaa, Vesa P. Hytönen
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0012591

Reassortant between Human-Like H3N2 and Avian H5 Subtype Influenza A Viruses in Pigs: A Potential Public Health Risk
Cited by: 22
Author(s): Cong Yu, Guangmei Wang, Guan Zhang, Shuang Chang, Quanpeng Zhang, Genhua Yang, Weili Wang, Qing-Feng Meng, Weiming Ren, Chunfeng Wang, Zhuang Ding
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0102407

Annexin5 Plays a Vital Role in Arabidopsis Pollen Development via Ca2+-Dependent Membrane Trafficking
Cited by: 37
Author(s): Jingen Zhu, Xianghua Wu, Shunjie Yuan, Dong Qian, Qiong Nan, Lizhe An, Yun Xiang
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0059411

Multiple Roles of the Extracellular Vestibule Amino Acid Residues in the Function of the Rat P2X4 Receptor
Cited by: 17
Author(s): Milos B. Rokic, Stanko S. Stojilković, Vojtěch Vávra, Pavlo Kuzyk, Vendula Tvrdoňová, Hana Zemková
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0059873

The Influence of 150-Cavity Binders on the Dynamics of Influenza A Neuraminidases as Revealed by Molecular Dynamics Simulations and Combined Clustering
Cited by: 18
Author(s): Kyle T. Greenway, Eric B. LeGresley, B. Mario Pinto
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0011708

Adhesion and Degranulation Promoting Adapter Protein (ADAP) Is a Central Hub for Phosphotyrosine-Mediated Interactions in T Cells
Cited by: 36
Author(s): Marc Sylvester, Stefanie Kliche, Sabine S. Lange, Sabine Geithner, Clementine Klemm, Andreas Schlösser, Arndt Großmann, Ulrich Stelzl, Burkhart Schraven, Eberhard Krause, Christian Freund
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0192512

A single β-octyl glucoside molecule induces HIV-1 Nef dimer formation in the absence of partner protein binding
Cited by: 6
Author(s): Mingqin Wu, John J. Alvarado, Corinne E. Augelli‐Szafran, Roger G. Ptak, Thomas E. Smithgall
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0108607

Molecular Dynamics of CYP2D6 Polymorphisms in the Absence and Presence of a Mechanism-Based Inactivator Reveals Changes in Local Flexibility and Dominant Substrate Access Channels
Cited by: 23
Author(s): Parker W. de Waal, Kyle F. Sunden, Laura Lowe Furge
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0023507

Molecular Basis for the Recognition of Adenomatous Polyposis Coli by the Discs Large 1 Protein
Cited by: 26
Author(s): Zhenyi Zhang, Hua Li, Leyi Chen, Xingyu Lu, Jian Zhang, Ping Xu, Kui Lin, Geng Wu
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0163816

Structural Insights into the Methylation of C1402 in 16S rRNA by Methyltransferase RsmI
Cited by: 8
Author(s): Mengchen Zhao, Heng Zhang, Guangfeng Liu, Li Wang, Jian Wang, Zengqiang Gao, Yuhui Dong, Linbo Zhang, Yong Gong
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0108245

Crystal Structure of Patatin-17 in Complex with Aged and Non-Aged Organophosphorus Compounds
Cited by: 17
Author(s): Sanjeeva J. Wijeyesakere, Rudy J. Richardson, Jeanne A. Stuckey
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0050011

Influence of Structural Symmetry on Protein Dynamics
Cited by: 14
Author(s): Yasuhiro Matsunaga, Ryotaro Koike, Motonori Ota, J.R.H. Tame, Akinori Kidera
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0034541

Identification and Functional Characterisation of Novel Glucokinase Mutations Causing Maturity-Onset Diabetes of the Young in Slovakia
Cited by: 22
Author(s): Lucia Valentínová, Nicola L. Beer, Juraj Staník, Nicholas D. Tribble, Martijn van de Bunt, M Hučková, Amy Barrett, I Klimeš, Daniela Gašperíková, Anna L. Gloyn
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0071657

Soluble Variants of Human Recombinant Glutaminyl Cyclase
Cited by: 4
Author(s): Cristiana Castaldo, Silvia Ciambellotti, Raquel de Pablo-Latorre, Daniela Lalli, Valentina Porcari, Paola Turano
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0126725

Corosolic Acid Inhibits Hepatocellular Carcinoma Cell Migration by Targeting the VEGFR2/Src/FAK Pathway
Cited by: 40
Author(s): Ku Chung-Yu, Wang Ying-Ren, Lin H, Shao‐Chun Lu, Jung‐Yaw Lin
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0001926

Alignment of Non-Covalent Interactions at Protein-Protein Interfaces
Cited by: 32
Author(s): Hongbo Zhu, Iris E. Sommer, Thomas Lengauer, Francisco S. Domingues
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0123303

Improved Catenated Structures of Bovine Peroxiredoxin III F190L Reveal Details of Ring-Ring Interactions and a Novel Conformational State
Cited by: 9
Author(s): Zhenbo Cao, Donna P. McGow, Colin Shepherd, J. Gordon Lindsay
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0001310

Exchanging Murine and Human Immunoglobulin Constant Chains Affects the Kinetics and Thermodynamics of Antigen Binding and Chimeric Antibody Autoreactivity
Cited by: 38
Author(s): Marcela Torres, Narcís Fernández-Fuentes, András Fiser, Arturo Casadevall
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0052225

Structural Insights into Cellulolytic and Chitinolytic Enzymes Revealing Crucial Residues of Insect β-N-acetyl-D-hexosaminidase
Cited by: 16
Author(s): Tian Liu, Yong Zhou, Lei Chen, Wei Chen, L. Liu, Xu Shen, Wenqing Zhang, Jianzhen Zhang, Qing Yang
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0039261

Intrinsically Unstructured Domain 3 of Hepatitis C Virus NS5A Forms a “Fuzzy Complex” with VAPB-MSP Domain Which Carries ALS-Causing Mutations
Cited by: 40
Author(s): Garvita Gupta, Haina Qin, Jianxing Song
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0133372

Structure and Function in Homodimeric Enzymes: Simulations of Cooperative and Independent Functional Motions
Cited by: 24
Author(s): Stephen A. Wells, Marc W. van der Kamp, John D. McGeagh, Adrian J. Mulholland
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0022779

A Single Amino Acid of Human Immunodeficiency Virus Type 2 Capsid Protein Affects Conformation of Two External Loops and Viral Sensitivity to TRIM5α
Cited by: 21
Author(s): Tadashi Miyamoto, Masahiro Yokoyama, Ken Kono, Tatsuo Shioda, Hironori Sato, Emi E. Nakayama
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0074347

Allosteric Coupling between the Intracellular Coupling Helix 4 and Regulatory Sites of the First Nucleotide-binding Domain of CFTR
Cited by: 29
Author(s): Jennifer E. Dawson, Patrick Farber, Julie D. Forman-Kay
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0057345

Solution Structure of the QUA1 Dimerization Domain of pXqua, the Xenopus Ortholog of Quaking
Cited by: 3
Author(s): Mohsin Ali, R. William Broadhurst
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0149228

Probing the Catalytic Mechanism of Vibrio harveyi GH20 β-N-Acetylglucosaminidase by Chemical Rescue
Cited by: 19
Author(s): Piyanat Meekrathok, Wipa Suginta
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0005058

Conservation of Carbohydrate Binding Interfaces — Evidence of Human HBGA Selection in Norovirus Evolution
Cited by: 109
Author(s): Ming Tan, Ming Xia, Yutao Chen, Weiming Bu, Rashmi S. Hegde, Jarosław Meller, Xuemei Li, Xi Jiang
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0077837

Combinatorial Engineering of Dextransucrase Specificity
Cited by: 16
Author(s): Romain Irague, Laurence Tarquis, Isabelle André, Claire Moulis, Sandrine Morel, Pierre Monsan, Gabrielle Potocki-Véronèse, Magali Remaud‐Siméon
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0234207

Client processing is altered by novel myopathy-causing mutations in the HSP40 J domain
Cited by: 4
Author(s): Melanie Y. Pullen, Conrad C. Weihl, Heather L. True
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0023032

A Crystal Structure of the Catalytic Core Domain of an Avian Sarcoma and Leukemia Virus Integrase Suggests an Alternate Dimeric Assembly
Cited by: 12
Author(s): Allison Ballandras, Karen Moreau, Xavier Robert, Marie-Pierre Confort, Romain Merceron, R. Haser, Corinne Ronfort, Patrice Gouet
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0032498

Macro-to-Micro Structural Proteomics: Native Source Proteins for High-Throughput Crystallization
Cited by: 34
Author(s): Monica A. Totir, Nathaniel Echols, Max H. Nanao, Christine L. Gee, Alisa Moskaleva, Scott Gradia, Anthony T. Iavarone, James M. Berger, Andrew P. May, Chloé Zubieta, Tom Alber
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0012713

Molecular Modeling-Based Evaluation of hTLR10 and Identification of Potential Ligands in Toll-Like Receptor Signaling
Cited by: 78
Author(s): Rajiv Gandhi Govindaraj, Balachandran Manavalan, Gwang Lee, Sangdun Choi
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0091145

Engineering of Pyranose Dehydrogenase for Increased Oxygen Reactivity
Cited by: 17
Author(s): Iris Krondorfer, Katharina Lipp, Dagmar Brugger, Petra Staudigl, Christoph Sygmund, Dietmar Haltrich, Clemens K. Peterbauer
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0186277

Substitutions in conserved regions preceding and within the linker affect activity and flexibility of tRNase ZL, the long form of tRNase Z
Cited by: 2
Author(s): Makenzie Saoura, Kyla Pinnock, Maria Pujantell-Graell, Louis Levinger
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0001815

The Assembly of the Plasmodial PLP Synthase Complex Follows a Defined Course
Cited by: 21
Author(s): Ingrid Müller, Julia Knöckel, Matthew R. Groves, Rositsa Jordanova, S.E. Ealick, Rolf D. Walter, Carsten Wrenger
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0126565

In Silico and In Vitro Analysis of Bacoside A Aglycones and Its Derivatives as the Constituents Responsible for the Cognitive Effects of Bacopa monnieri
Cited by: 58
Author(s): Seetha Ramasamy, Sek Peng Chin, Sri Devi Sukumaran, Michael J. C. Buckle, Lik Voon Kiew, Lip Yong Chung
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0059142

Optimization of the Capsid of Recombinant Adeno-Associated Virus 2 (AAV2) Vectors: The Final Threshold?
Cited by: 84
Author(s): George Aslanidi, Angela Rivers, Luis A. Ortiz, Liujiang Song, Ling Chen, Lakshmanan Govindasamy, Kim Van Vliet, Tan Ming, Mavis Agbandje‐McKenna, Arun Srivastava
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0070005

Analysis of Adaptation Mutants in the Hemagglutinin of the Influenza A(H1N1)pdm09 Virus
Cited by: 18
Author(s): Alicia Jiménez-Alberto, Esmeralda Alvarado-Facundo, Rosa María Ribas‐Aparicio, Juan Arturo Castelán-Vega
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0037251

Computational Predictions of Volatile Anesthetic Interactions with the Microtubule Cytoskeleton: Implications for Side Effects of General Anesthesia
Cited by: 52
Author(s): Travis J. A. Craddock, Marc St. George, Holly Freedman, Khaled Barakat, Sambasivarao Damaraju, Stuart R. Hameroff, Jack A. Tuszyński
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0174921

Alteration of the α1β2/α2β1 subunit interface contributes to the increased hemoglobin-oxygen affinity of high-altitude deer mice
Cited by: 4
Author(s): Noriko Inoguchi, Nobuhiro Mizuno, Seiki Baba, Takashi Kumasaka, Chandrasekhar Natarajan, Jay F. Storz, Hideaki Moriyama
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0120492

Cardiac Contractility Structure-Activity Relationship and Ligand-Receptor Interactions; the Discovery Of Unique and Novel Molecular Switches in Myosuppressin Signaling
Cited by: 11
Author(s): Megan Leander, Chloe Bass, Kathryn Marchetti, Benjamin F. Maynard, Juan Pedro Wulff, Sheila Ons, Robert C. Nichols
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0083609

A Genetically Encoded Reporter for Real-Time Imaging of Cofilin-Actin Rods in Living Neurons
Cited by: 19
Author(s): Jianjie Mi, Alisa E. Shaw, Chi W. Pak, Keifer P. Walsh, Laurie S. Minamide, Ben C. Bernstein, Thomas Kühn, James R. Bamburg
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0090487

Shedding Some Light over the Floral Metabolism by Arum Lily (Zantedeschia aethiopica) Spathe De Novo Transcriptome Assembly
Cited by: 17
Author(s): Elizabete de Souza Cândido, Gabriel da Rocha Fernandes, Sérgio Amorim de Alencar, Marlon Henrique Cardoso, Stella Maris de Freitas Lima, Vívian de Jesus Miranda, William F. Porto, Diego O. Nolasco, Nelson G. Oliveira-Júnior, Aulus Estevão Anjos de Deus Barbosa, Robert Pogue, Taia Maria Berto Rezende, Simoni Campos Dias, Octávio L. Franco
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0162000

Blocking the Interactions between Calcium-Bound S100A12 Protein and the V Domain of RAGE Using Tranilast
Cited by: 16
Author(s): Jian Wei Chiou, Brian Fu, Ruey Hwang Chou, Chin Yu
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0181783

Synthesis of novel coumarin nucleus-based DPA drug-like molecular entity: In vitro DNA/Cu(II) binding, DNA cleavage and pro-oxidant mechanism for anticancer action
Cited by: 20
Author(s): Shahper N. Khan, Ali Mohammed Malla, Atif Zafar, Imrana Naseem
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0083461

Ligand Recognition by the TPR Domain of the Import Factor Toc64 from Arabidopsis thaliana
Cited by: 12
Author(s): Rashmi Panigrahi, Abdussalam Adina-Zada, James Whelan, Alice Vrielink
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0086918

Crystal Structure and Self-Interaction of the Type VI Secretion Tail-Tube Protein from Enteroaggregative Escherichia coli
Cited by: 41
Author(s): Badreddine Douzi, S. Spinelli, Stéphanie Blangy, Alain Roussel, Éric Durand, Yannick R. Brunet, Éric Cascales, Christian Cambillau
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0052679

A Sequence in Subdomain 2 of DBL1α of Plasmodium falciparum Erythrocyte Membrane Protein 1 Induces Strain Transcending Antibodies
Cited by: 11
Author(s): Karin Blomqvist, Letusa Albrecht, María del Pilar Quintana, Davide Angeletti, Nicolas Joannin, Arnaud Chêne, Kirsten Moll, Mats Wahlgren
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0022348

High Resolution Structure of the ba3 Cytochrome c Oxidase from Thermus thermophilus in a Lipidic Environment
Cited by: 110
Author(s): Theresa Tiefenbrunn, Wei Liu, Ying Chen, Vsevolod Katritch, C.D. Stout, James A. Fee, Vadim Cherezov
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0177090

Structural and functional mapping of Rtg2p determinants involved in retrograde signaling and aging of Saccharomyces cerevisiae
Cited by: 7
Author(s): Rafaela Maria Rios-Anjos, Vittoria de Lima Camandona, Lucas Bleicher, José Ribamar Ferreira-Júnior
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0063666

Engineering Pseudomonas protegens Pf-5 for Nitrogen Fixation and its Application to Improve Plant Growth under Nitrogen-Deficient Conditions
Cited by: 61
Author(s): Lorena Setten, Gabriela Soto, Matteo Mozzicafreddo, Ana Romina Fox, Christian Lisi, Massimiliano Cuccioloni, Mauro Angeletti, Elba Pagano, Antonio Díaz-Paleo, Nicolás Daniel Ayub
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0036267

Structural and Mutational Studies on Substrate Specificity and Catalysis of Salmonella typhimurium D-Cysteine Desulfhydrase
Cited by: 16
Author(s): S.R. Bharath, S. Bisht, R.K. Harijan, H.S. Savithri, M.R.N. Murthy
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0077437

Identification and Characterization of a Novel Trehalose Synthase Gene Derived from Saline-Alkali Soil Metagenomes
Cited by: 33
Author(s): Ling Jiang, Ming Tsan Lin, Yang Zhang, Yanping Li, Xing‐You Xu, Shuang Li, He Huang
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0023815

Molecular Basis of Ligand Dissociation in β-Adrenergic Receptors
Cited by: 78
Author(s): Ángel F. González, Tomás Pérez-Acle, Leonardo Pardo, Xavier Deupí
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0076504

Modulating the RNA Processing and Decay by the Exosome: Altering Rrp44/Dis3 Activity and End-Product
Cited by: 11
Author(s): Filipa P. Reis, Ana Barbas, A. A. Klauer-King, Borislava Tsanova, Daneen Schaeffer, Eduardo López-Viñas, Paulino Gómez‐Puertas, Ambro van Hoof, Cecília M. Arraiano
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0129071

Iridovirus CARD Protein Inhibits Apoptosis through Intrinsic and Extrinsic Pathways
Cited by: 10
Author(s): Chien-Wen Chen, Ming-Shan Wu, Yu‐Hsuan Huang, Pei‐Wen Lin, Chueh-Ju Shih, Fu-Pang Lin, Chi-Yao Chang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0027396

CARD8 and NLRP1 Undergo Autoproteolytic Processing through a ZU5-Like Domain
Cited by: 161
Author(s): Andrea D’Osualdo, Christian X. Weichenberger, Roland N. Wagner, Adam Godzik, John Wooley, John C. Reed
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0118341

Carboxyl-Terminal Truncations Alter the Activity of the Human α-Galactosidase A
Cited by: 5
Author(s): Ali Meghdari, Gao Nicholas, Abass Abdullahi, Erin Stokes, David H. Calhoun
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0160186

Structural and Catalytic Characterization of a Fungal Baeyer-Villiger Monooxygenase
Cited by: 32
Author(s): Felix Martín Ferroni, Carmien Tolmie, Martha S. Smit, Diederik J. Opperman
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0137276

Evolution of a Novel Antiviral Immune-Signaling Interaction by Partial-Gene Duplication
Cited by: 9
Author(s): Bryan Korithoski, Oralia Kolaczkowski, Krishanu Mukherjee, Reema Kola, Chandra Earl, Bryan Kolaczkowski
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0021947

Mapping of Protein-Protein Interaction Sites in the Plant-Type [2Fe-2S] Ferredoxin
Cited by: 18
Author(s): Haruka Kameda, Kei Hirabayashi, Keita Wada, Keiichi Fukuyama
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0132431

Functional Characterization of a Ketoreductase-Encoding Gene med-ORF12 Involved in the Formation of a Stereospecific Pyran Ring during the Biosynthesis of an Antitumor Antibiotic Medermycin
Cited by: 8
Author(s): Qiang He, L e Li, Tingting Yang, Ruijuan Li, Aiying Li
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0134506

Substrate Specificity, Inhibitor Selectivity and Structure-Function Relationships of Aldo-Keto Reductase 1B15: A Novel Human Retinaldehyde Reductase
Cited by: 15
Author(s): Joan Giménez-Dejoz, Michal H. Kolář, Francesc Xavier Ruiz, Isidro Crespo, A. Cousido-Siah, A. Podjarny, Oleg A. Barski, Jindřich Fanfrlík, Xavier Parés, Jaume Farrés, Sergio Porté
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0186363

Ssn6-Tup1 global transcriptional co-repressor: Role of the N-terminal glutamine-rich region of Ssn6
Cited by: 7
Author(s): Athanassios Tartas, Christoforos Zarkadas, Maria Palaiomylitou, Niki Gounalaki, Dimitris Tzamarias, Metaxia Vlassi
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0090919

Mutagenic Organized Recombination Process by Homologous In Vivo Grouping (MORPHING) for Directed Enzyme Evolution
Cited by: 51
Author(s): David González-Pérez, Patricia Molina‐Espeja, Eva García-Ruiz, Miguel Alcalde
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0127993

Cross Talk between KGF and KITLG Proteins Implicated with Ovarian Folliculogenesis in Buffalo Bubalus bubalis
Cited by: 4
Author(s): Deepak Panwar, Leena Rawal, Neeta Sehgal, Sher Ali
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0147806

Energetic Landscape of MDM2-p53 Interactions by Computational Mutagenesis of the MDM2-p53 Interaction
Cited by: 7
Author(s): Kelly M. Thayer, George A. Beyer
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0056261

Crystal Structure of Silkworm Bombyx mori JHBP in Complex With 2-Methyl-2,4-Pentanediol: Plasticity of JH-Binding Pocket and Ligand-Induced Conformational Change of the Second Cavity in JHBP
Cited by: 14
Author(s): Zui Fujimoto, Rintaro Suzuki, Takahiro Shiotsuki, Wataru Tsuchiya, Akira Tase, Mitsuru Momma, Toshimasa Yamazaki
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0059798

2,2′-Diphenyl-3,3′-Diindolylmethane: A Potent Compound Induces Apoptosis in Breast Cancer Cells by Inhibiting EGFR Pathway
Cited by: 32
Author(s): Arijit Bhowmik, N. K. Das, Samir Kumar Pal, Mihirbaran Mandal, Samir Bhattacharya, Moumita Sarkar, Parasuraman Jaisankar, Nakul C. Maiti, Mrinal K. Ghosh
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0032518

Loss and Gain of Function in SERPINB11: An Example of a Gene under Selection on Standing Variation, with Implications for Host-Pathogen Interactions
Cited by: 17
Author(s): Susana Seixas, Nevyana Ivanova, Zélia Ferreira, Jorge Rocha, Bruno L. Victor
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0165074

Kinetic Controlled Tag-Catcher Interactions for Directed Covalent Protein Assembly
Cited by: 49
Author(s): Lee Ling Tan, Shawn Hoon, Fong Tian Wong
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0060610

Structural and Phylogenetic Studies with MjTX-I Reveal a Multi-Oligomeric Toxin – a Novel Feature in Lys49-PLA2s Protein Class
Cited by: 17
Author(s): Daniela P. Marchi-Salvador, Carlos A. H. Fernandes, Ângelo J. Magro, Daniela P. Marchi-Salvador, Walter Luís Garrido Cavalcante, Roberto Fernández, Márcia Gallacci, Andreimar M. Soares, Cristiano L. P. Oliveira, Marcos R.M. Fontes
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0112677

Advantages and Versatility of Fluorescence-Based Methodology to Characterize the Functionality of LDLR and Class Mutation Assignment
Cited by: 32
Author(s): Aitor Etxebarria, Asier Benito‐Vicente, Ana Catarina Alves, Helena Ostolaza, Mafalda Bourbon, César Martín
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0026794

The Molecular Basis for the Broad Substrate Specificity of Human Sulfotransferase 1A1
Cited by: 50
Author(s): Ilana Berger Fridman, Chen Guttman, Dotan Amar, Raz Zarivach, Amir Aharoni
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0176444

Aromatic amino acids in the cellulose binding domain of Penicillium crustosum endoglucanase EGL1 differentially contribute to the cellulose affinity of the enzyme
Cited by: 3
Author(s): Jiangke Yang, Wei Xiong, Fangyuan Chen, Li Xu, Zhenggang Han
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0104592

Anticancer Activities of Pterostilbene-Isothiocyanate Conjugate in Breast Cancer Cells: Involvement of PPARγ
Cited by: 21
Author(s): Kumar Nikhil, Shruti Sharan, Abhimanyu Singh, Ajanta Chakraborty, Partha Roy
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0171727

MD simulation of the Tat/Cyclin T1/CDK9 complex revealing the hidden catalytic cavity within the CDK9 molecule upon Tat binding
Cited by: 5
Author(s): Kaori Asamitsu, Takatsugu Hirokawa, Takashi Okamoto
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0074281

Transmembrane and Juxtamembrane Structure of αL Integrin in Bicelles
Cited by: 17
Author(s): Wahyu Surya, Yan Li, Óscar Millet, Tammo Diercks, Jaume Torres
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0035962

Structure of Bradavidin – C-Terminal Residues Act as Intrinsic Ligands
Cited by: 8
Author(s): Jenni Leppiniemi, Toni Grönroos, Juha Määttä, Mark S. Johnson, Markku S. Kulomaa, Vesa P. Hytönen, Tomi T. Airenne
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0003201

The Difficult Case of Crystallization and Structure Solution for the ParC55 Breakage-Reunion Domain of Topoisomerase IV from Streptococcus pneumoniae
Cited by: 2
Author(s): Maninder K. Sohi, D. A. Veselkov, Ivan Laponogov, Xiao-Su Pan, L. Mark Fisher, Mark Sanderson
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0030890

Ashwagandha Derived Withanone Targets TPX2-Aurora A Complex: Computational and Experimental Evidence to its Anticancer Activity
Cited by: 40
Author(s): Abhinav Grover, Rumani Singh, Ashutosh Shandilya, Didik Priyandoko, Vibhuti Agrawal, Virendra S. Bisaria, Renu Wadhwa, Sunil C. Kaul, Durai Sundar
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0040757

Crystal Structure of Lymnaea stagnalis AChBP Complexed with the Potent nAChR Antagonist DHβE Suggests a Unique Mode of Antagonism
Cited by: 41
Author(s): Azadeh Shahsavar, J.S. Kastrup, Elsebet Ø. Nielsen, Jesper L. Kristensen, Michael Gajhede, Thomas Balle
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0033340

Rationalization and Design of the Complementarity Determining Region Sequences in an Antibody-Antigen Recognition Interface
Cited by: 41
Author(s): Chung Ming Yu, Hung-Pin Peng, Ing Chien Chen, Yu Ching Lee, Jun Bo Chen, Keng‐Chang Tsai, Ching Tai Chen, Jeng Yih Chang, Ei Wen Yang, Po Chiang Hsu, Jhih Wei Jian, Hung Ju Hsu, Hung-Ju Chang, Wen Lian Hsu, Kai Huang, Alex Che, An‐Suei Yang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0216015

Promotion of adipogenesis by JMJD6 requires the AT hook-like domain and is independent of its catalytic function
Cited by: 5
Author(s): Pablo Reyes-Gutierrez, Jake W. Carrasquillo-Rodríguez, Anthony N. Imbalzano
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0024173

Phosphorylation Alters the Interaction of the Arabidopsis Phosphotransfer Protein AHP1 with Its Sensor Kinase ETR1
Cited by: 35
Author(s): Benjamin Scharein, Georg Groth
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0006147

Pyrin Modulates the Intracellular Distribution of PSTPIP1
Cited by: 55
Author(s): Andrea L. Waite, Philip E. Schaner, Neil Richards, Banu Balcı-Peynircioğlu, Seth L. Masters, Susannah Brydges, Michelle Fox, Arthur S. Hong, Engin Yılmaz, Daniel L. Kastner, Ellis L. Reinherz, Deborah L. Gumucio
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0146959

Molecular and Functional Characterization of a Polygalacturonase-Inhibiting Protein from Cynanchum komarovii That Confers Fungal Resistance in Arabidopsis
Cited by: 20
Author(s): Nana Liu, Xueqing Ma, Sihong Zhou, Ping Wang, Yipeng Sun, Xiancai Li, Yuxia Hou
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0076668

Cysteine Residues in the Major Capsid Protein, Vp1, of the JC Virus Are Important for Protein Stability and Oligomer Formation
Cited by: 11
Author(s): Shintaro Kobayashi, Tadaki Suzuki, Manabu Igarashi, Yasuko Orba, Noriko Ohtake, Keita Nagakawa, Kenichi Niikura, Takashi Kimura, Harumi Kasamatsu
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0064674

The Evolutionary Portrait of Metazoan NAD Salvage
Cited by: 8
Author(s): João Carneiro, Sara Duarte-Pereira, Luı́sa Azevedo, L. Filipe C. Castro, Paulo Aguiar, Irina S. Moreira, António Amorim, Raquel M. Silva
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0074053

Distal Effect of Amino Acid Substitutions in CYP2C9 Polymorphic Variants Causes Differences in Interatomic Interactions against (S)-Warfarin
Cited by: 16
Author(s): Panida Lertkiatmongkol, Anunchai Assawamakin, George C. White, Gaurav Chopra, Pornpimol Rongnoparut, Ram Samudrala, Sissades Tongsima
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0150433

Development of a Microemulsion Formulation for Antimicrobial SecA Inhibitors
Cited by: 20
Author(s): Jiahuai Hu, Nagaraju Akula, Nian Wang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0053819

Molecular Analysis of the Prostacyclin Receptor’s Interaction with the PDZ1 Domain of Its Adaptor Protein PDZK1
Cited by: 8
Author(s): Gabriel Birrane, Eamon P. Mulvaney, Rinku Pal, B. Thérèse Kinsella, Olivier Kocher
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0073386

Alpha-Helical Destabilization of the Bcl-2-BH4-Domain Peptide Abolishes Its Ability to Inhibit the IP3 Receptor
Cited by: 28
Author(s): Giovanni Monaco, Elke Decrock, Koen Nuyts, Larry E. Wagner, Tomas Luyten, S.V. Strelkov, Ludwig Missiaen, Wim M. De Borggraeve, Luc Leybaert, David I. Yule, Humbert De Smedt, Jan B. Parys, Geert Bultynck
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0041667

Bisphenol A Binds to the Local Anesthetic Receptor Site to Block the Human Cardiac Sodium Channel
Cited by: 63
Author(s): Andrias O. O’Reilly, Esther Eberhardt, Christian Weidner, Christian Alzheimer, B.A. Wallace, Angelika Lampert
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0220711

Computational analysis of high-risk SNPs in human CHK2 gene responsible for hereditary breast cancer: A functional and structural impact
Cited by: 14
Author(s): Nutan V. Badgujar, Bhoomi Tarapara, Franky D. Shah
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0156981

Identification of a Novel NLRP12 Nonsense Mutation (Trp408X) in the Extremely Rare Disease FCAS by Exome Sequencing
Cited by: 18
Author(s): Xiaoru Xia, Caijun Dai, Xueping Zhu, Qiumei Liao, Xu Luo, Yangyang Fu, Liangxing Wang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0033166

Fatal Cases of Influenza A(H3N2) in Children: Insights from Whole Genome Sequence Analysis
Cited by: 16
Author(s): Mónica Galiano, Benjamin F. Johnson, Richard Myers, Joanna Ellis, Rod S. Daniels, Maria Zambon
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0001624

Isolation, Cloning and Structural Characterisation of Boophilin, a Multifunctional Kunitz-Type Proteinase Inhibitor from the Cattle Tick
Cited by: 104
Author(s): Sandra Macedo-Ribeiro, Carla Almeida, Bárbara M. Calisto, Thomas Friedrich, Reinhard Mentele, Jörg Stürzebecher, Pablo Fuentes‐Prior, Pedro José Barbosa Pereira
Software Mentions: 1
Published: almost 17 years ago