Projects: pypi: PyMOL
https://packages.ecosyste.ms/registries/pypi.org/packages/PyMOL
1 version
Latest release: almost 3 years ago
5 dependent packages
Science Score: 90/100
Starting Score: 100 points
Bonuses:
Penalties:
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-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (90)
Papers Mentioning PyMOL 8,266
10.1371/journal.pone.0082549
CLCN1 Mutations in Czech Patients with Myotonia Congenita, In Silico Analysis of Novel and Known Mutations in the Human Dimeric Skeletal Muscle Chloride ChannelCited by: 27
Author(s): Daniela Skálová, Jana Zídková, Stanislav Voháňka, Radim Mazanec, Zuzana Mušová, Petr Vondráček, Lenka Mrázová, Josef Kraus, Kamila Réblová, Lenka Fajkusová
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0035305
The GPI Anchor Signal Sequence Dictates the Folding and Functionality of the Als5 Adhesin from Candida albicansCited by: 12
Author(s): Mohammad Faiz Ahmad, Bhawna Yadav, Pravin Kumar, Amrita Puri, Mohit Mazumder, Anwar Ali, S. Gourinath, Rohini Muthuswami, Sneha Sudha Komath
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0176255
Thermal stability and kinetic constants for 129 variants of a family 1 glycoside hydrolase reveal that enzyme activity and stability can be separately designedCited by: 16
Author(s): Dylan Alexander Carlin, Siena Hapig-Ward, Bill Wayne Chan, Natalie Damrau, Mary Riley, Ryan Caster, Bowen Bethards, Justin B. Siegel
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0100069
Active-State Model of a Dopamine D2 Receptor - Gαi Complex Stabilized by Aripiprazole-Type Partial AgonistsCited by: 30
Author(s): Ralf C. Kling, Nuška Tschammer, Harald Lanig, Timothy Clark, Peter Gmeiner
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0126360
A Combination of Doxycycline and Ribavirin Alleviated Chikungunya InfectionCited by: 95
Author(s): Hussin A. Rothan, Hirbod Bahrani, Mohamed Zeriouh, Teow Chong Teoh, Esaki Muthu Shankar, Noorsaadah Abdul Rahman, Rohana Yusof
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0102481
Flexibility of PCNA-Protein Interface Accommodates Differential Binding PartnersCited by: 18
Author(s): Anthony M. Pedley, Markus A. Lill, V. Jo Davisson
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0186442
Hydrophobic residues are critical for the helix-forming, hemolytic and bactericidal activities of amphipathic antimicrobial peptide TP4Cited by: 24
Author(s): Ting-Wei Chang, Shu‐Yi Wei, Shih-Han Wang, Hung-Mu Wei, Yu-June Wang, Chiu‐Feng Wang, Chinpan Chen, You‐Di Liao
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0070273
Mechanistic Insights into the Neutralization of Cytotoxic Abrin by the Monoclonal Antibody D6F10Cited by: 13
Author(s): Shradha Bagaria, Devasena Ponnalagu, S. Bisht, Anjali A. Karande
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0081301
Molecular Features Related to HIV Integrase Inhibition Obtained from Structure- and Ligand-Based ApproachesCited by: 8
Author(s): Lucas L. Carvalho, Vinícius Gonçalves Maltarollo, Emmanuela Ferreira de Lima, Karen C. Weber, Káthia Maria Honório, Albérico Borges Ferreira da Silva
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0074436
Direct Regulation of Cytochrome c Oxidase by Calcium IonsCited by: 31
Author(s): Tatiana V. Vygodina, Anna Kirichenko, Alexander A. Konstantinov
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0103947
Structural Insights into Calcium-Bound S100P and the V Domain of the RAGE ComplexCited by: 40
Author(s): Srinivasa R. Penumutchu, Ruey Hwang Chou, Chin Yu
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0019094
Multidimensional Scaling Reveals the Main Evolutionary Pathways of Class A G-Protein-Coupled ReceptorsCited by: 31
Author(s): Julien Pelé, Hervé Abdi, Matthieu Moreau, David Thybert, Marie Chabbert
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pone.0040618
Ipomoelin, a Jacalin-Related Lectin with a Compact Tetrameric Association and Versatile Carbohydrate Binding Properties Regulated by Its N TerminusCited by: 9
Author(s): Wei-Chieh Chang, Kai-Lun Liu, Fang‐Chi Hsu, Shih‐Tong Jeng, Yi-Sheng Cheng
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0047056
FUS-NLS/Transportin 1 Complex Structure Provides Insights into the Nuclear Targeting Mechanism of FUS and the Implications in ALSCited by: 58
Author(s): Chunyan Niu, Jia Yu Zhang, Feng Gao, Liuqing Yang, Minghao Jia, Haining Zhu, Weimin Gong
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0089935
Improvement in Low-Homology Template-Based Modeling by Employing a Model Evaluation Method with Focus on TopologyCited by: 10
Author(s): Wentao Dai, Tingrui Song, Xuan Wang, Xinchun Jin, Lizong Deng, Aiping Wu, Taijiao Jiang
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0046388
Engineering a Disulfide Bond in the Lid Hinge Region of Rhizopus chinensis Lipase: Increased Thermostability and Altered Acyl Chain Length SpecificityCited by: 67
Author(s): Yu Xiang, Nian-Jiang Tan, Rong Xiao, Yan Xu
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0106642
Probing the Activity Modification Space of the Cysteine Peptidase Cathepsin K with Novel Allosteric ModifiersCited by: 19
Author(s): Marko Novinec, Brigita Lenarčič, Antonio Baici
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0127081
Distinctive Structure of the EphA3/Ephrin-A5 Complex Reveals a Dual Mode of Eph Receptor Interaction for Ephrin-A5Cited by: 11
Author(s): G. Jason Forse, Maria Uson, Fariborz Nasertorabi, Anand Kolatkar, Ilaria Lamberto, Elena B. Pasquale, Peter Kühn
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0044313
Characterization of a Novel Phenol Hydroxylase in Indoles Biotranformation from a Strain Arthrobacter sp. W1Cited by: 24
Author(s): Yuanyuan Qu, Shengnan Shi, Hao Zhou, Qiao Ma, Xinliang Li, Xuwang Zhang, Jiti Zhou
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0095183
Molecular Characterization of HIV-1 Subtype C gp-120 Regions Potentially Involved in Virus Adaptive MechanismsCited by: 4
Author(s): Alessandra Cenci, Giuseppe D’Avenio, Lara Tavoschi, Michele Chiappi, Simone Becattini, Maria del Pilar Narino, Orietta Picconi, Daniela Bernasconi, Emanuele Fanales-Belasio, Eftyhia Vardas, Hosea Sukati, Alessandra Lo Presti, Massimo Ciccozzi, Paolo Monini, Barbara Ensoli, Mauro Grigioni, Stefano Buttò
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0004155
Peptides Derived from HIV-1 Integrase that Bind Rev Stimulate Viral Genome IntegrationCited by: 31
Author(s): Aviad Levin, Zvi Hayouka, Markus Helfer, Ruth Brack‐Werner, Assaf Friedler, Abraham Loyter
Software Mentions: 1
Published: over 17 years ago
10.1371/journal.pone.0188127
Crystal structure of a tripartite complex between C3dg, C-terminal domains of factor H and OspE of Borrelia burgdorferiCited by: 13
Author(s): R. Kolodziejczyk, Kornelia M. Mikula, Tommi Kotila, Vincent L. G. Postis, T. Sakari Jokiranta, Adrian Goldman, Taru Meri
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0180999
Spatial location of neutralizing and non-neutralizing B cell epitopes on domain 1 of ricin toxin’s binding subunitCited by: 16
Author(s): Yinghui Rong, Greta Van Slyke, David J. Vance, Jennifer Westfall, Dylan Ehrbar, Nicholas J. Mantis
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0108419
Fine Epitope Mapping of the Central Immunodominant Region of Nucleoprotein from Crimean-Congo Hemorrhagic Fever Virus (CCHFV)Cited by: 18
Author(s): Dongliang Liu, Li Yang, Jing Zhao, Fei Deng, Duan Xiao-mei, Kou Chun, Ting Wu, Yijie Li, Yongxing Wang, J i, Jianhua Yang, Zhìhóng Hú, Fuchun Zhang, Yújiāng Zhāng, Song Sun
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0133556
Correction: MamA as a Model Protein for Structure-Based Insight into the Evolutionary Origins of Magnetotactic BacteriaCited by: 2
Author(s): N. Zeytuni, Samuel Cronin, Christopher T. Lefèvre, Pascal Arnoux, Dror Baran, Zvi Shtein, Geula Davidov, Raz Zarivach
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0183085
Cysteine-rich protein 2 accelerates actin filament cluster formationCited by: 2
Author(s): Takanori Kihara, Yoshiaki Sugimoto, Satoko Shinohara, Shunpei Takaoka, Jun Miyake
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0031164
Insights into SCP/TAPS Proteins of Liver Flukes Based on Large-Scale Bioinformatic Analyses of Sequence DatasetsCited by: 24
Author(s): Cinzia Cantacessi, Andreas Hofmann, Neil D. Young, Ursula Broder, Ross S. Hall, Alex Loukas, Robin B. Gasser
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0034627
Identification of Critical Amino Acids in an Immunodominant IgE Epitope of Pen c 13, a Major Allergen from Penicillium citrinumCited by: 17
Author(s): Jui-Chieh Chen, Li-Li Chiu, Kuang-Lun Lee, Weining Huang, Jiing-Guang Chuang, Hsin-Kai Liao, Lu-Ping Chow
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0024366
Minimal Antizyme Peptide Fully Functioning in the Binding and Inhibition of Ornithine Decarboxylase and Antizyme InhibitorCited by: 14
Author(s): Ju-Yi Hsieh, Jiawei Yang, Chih‐Li Lin, Guang‐Yaw Liu, Hui‐Chih Hung
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0116990
Photoactive Protochlorophyllide-Enzyme Complexes Reconstituted with PORA, PORB and PORC Proteins of A. thaliana: Fluorescence and Catalytic PropertiesCited by: 31
Author(s): Michał Gabruk, Anna Stecka, Wojciech Strzałka, Jerzy Kruk, Kazimierz Strzałka, Beata Myśliwa-Kurdziel
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0051660
Functional Roles of the Non-Catalytic Calcium-Binding Sites in the N-Terminal Domain of Human Peptidylarginine Deiminase 4Cited by: 17
Author(s): Yiliang Liu, I-Chen Tsai, Chia-Wei Chang, Yu‐Ming Liao, Guang‐Yaw Liu, Hui‐Chih Hung
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0111802
Towards Novel Amino Acid-Base Contacts in Gene Regulatory Proteins: AraR – A Case StudyCited by: 1
Author(s): Isabel Lopes Correia, Irina Saraiva Franco, Isabel Sá‐Nogueira
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0166191
The Diversity of Yellow-Related Proteins in Sand Flies (Diptera: Psychodidae)Cited by: 12
Author(s): Michal Šíma, Marián Novotný, Lukáš Pravda, Petra Sumová, Iva Rohoušová, Petr Volf
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0010353
Structural Allele-Specific Patterns Adopted by Epitopes in the MHC-I Cleft and Reconstruction of MHC:peptide Complexes to Cross-Reactivity AssessmentCited by: 23
Author(s): Dinler Amaral Antunes, Gustavo Fioravanti Vieira, Maurício Rigo, Samuel Paulo Cibulski, Marialva Sinigaglia, José Artur Bogo Chies
Software Mentions: 1
Published: about 16 years ago
10.1371/journal.pone.0024329
Intrinsic Determinants of Aβ12–24 pH-Dependent Self-Assembly Revealed by Combined Computational and Experimental StudiesCited by: 27
Author(s): Wei Xu, Ce Zhang, Philippe Derreumaux, Astrid Gräslund, Ludmilla A. Morozova‐Roche, Yuguang Mu
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0097274
ATP1A3 Mutations and Genotype-Phenotype Correlation of Alternating Hemiplegia of Childhood in Chinese PatientsCited by: 57
Author(s): Xiaoling Yang, Hua Gao, Jie Zhang, Xiaojing Xu, Xiaoyan Liu, Xiru Wu, Liping Wei, Yuehua Zhang
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0011516
Modeling-Dependent Protein Characterization of the Rice Aldehyde Dehydrogenase (ALDH) Superfamily Reveals Distinct Functional and Structural FeaturesCited by: 46
Author(s): Simeon O. Kotchoni, José Carlos Jiménez-López, Dongying Gao, Vincent M. Edwards, Emma W. Gachomo, Venu M. Margam, Manfredo J. Seufferheld
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0085768
Human Variants in the Neuronal Basic Helix-Loop-Helix/Per-Arnt-Sim (bHLH/PAS) Transcription Factor Complex NPAS4/ARNT2 Disrupt FunctionCited by: 21
Author(s): David C. Bersten, John B. Bruning, Daniel J. Peet, Murray L. Whitelaw
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0017396
Evolution of Acetylcholinesterase and Butyrylcholinesterase in the Vertebrates: An Atypical Butyrylcholinesterase from the Medaka Oryzias latipesCited by: 34
Author(s): Leo Pezzementi, Florian Nachon, Arnaud Chatonnet
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0141716
Structural and Enzymatic Characterization of a Nucleoside Diphosphate Sugar Hydrolase from Bdellovibrio bacteriovorusCited by: 6
Author(s): Andres H. de la Peña, Allison Suarez, Krisna C. Duong‐Ly, Andrew Schoeffield, Mario A. Pizarro-Dupuy, Melissa Zarr, Silvia A. Piñeiro, L. Mario Amzel, Sandra B. Gabelli
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0146907
Chicken scFvs with an Artificial Cysteine for Site-Directed ConjugationCited by: 5
Author(s): Aram Yoon, Jung Won Shin, Soohyun Kim, Hyori Kim, Junho Chung
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0137279
To Hit or Not to Hit, That Is the Question – Genome-wide Structure-Based Druggability Predictions for Pseudomonas aeruginosa ProteinsCited by: 9
Author(s): Aurijit Sarkar, Ruth Brenk
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0075055
Engineering Yeast Hexokinase 2 for Improved Tolerance Toward Xylose-Induced InactivationCited by: 23
Author(s): Basti Bergdahl, Anders Sandström, Celina Borgström, Tarinee Boonyawan, Ed W. J. van Niel, Marie-Françoise Gorwa-Grauslund
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0026760
Differential Sensitivity of ERBB2 Kinase Domain Mutations towards LapatinibCited by: 103
Author(s): Rama Krishna Kancha, Nikolas von Bubnoff, Natalie Bartosch, Christian Peschel, Richard A. Engh, Justus Duyster
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0045930
NMR and Mutational Identification of the Collagen-Binding Site of the Chaperone Hsp47Cited by: 12
Author(s): Maho Yagi-Utsumi, Y. Sumi, Yoshiki Yamaguchi, Yoshimi Nishi, Eiji Kurimoto, Yoshihito Ishida, Takayuki Homma, Jun Hoseki, Yohei Nishikawa, Takao Koide, Kazuhiro Nagata, Koichi Kato
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0201298
Mechanism by which water and protein electrostatic interactions control proton transfer at the active site of channelrhodopsinCited by: 18
Author(s): Suliman Adam, Ana‐Nicoleta Bondar
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0176078
Observation of σ-pore currents in mutant hKv1.2_V370C potassium channelsCited by: 2
Author(s): Pavel Tyutyaev, Stephan Grissmer
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0197029
Fn3 proteins engineered to recognize tumor biomarker mesothelin internalize upon bindingCited by: 7
Author(s): Allison R. Sirois, Daniela A. Deny, Samantha Rose Baierl, Katia S. George, Sarah Moore
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0032702
Direct Interaction of the N-Terminal Domain of Ribosomal Protein S1 with Protein S2 in Escherichia coliCited by: 26
Author(s): Konstantin Byrgazov, Salim Manoharadas, Anna Chao Kaberdina, Oliver Vesper, Isabella Moll
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0244176
Designing of a next generation multiepitope based vaccine (MEV) against SARS-COV-2: Immunoinformatics and in silico approachesCited by: 75
Author(s): Muhammad Tahir ul Qamar, Abdur Rehman, Kishver Tusleem, Usman Ali Ashfaq, Muhammad Qasim, Xitong Zhu, Israr Fatima, Farah Shahid, Ling Ling Chen
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0059206
Molecular Modeling of Disease Causing Mutations in Domain C1 of cMyBP-CCited by: 19
Author(s): Poornima Gajendrarao, Navaneethakrishnan Krishnamoorthy, Heba Sh. Kassem, Sarah Moharem-Elgamal, Fabiola Cecchi, Iacopo Olivotto, Magdi H. Yacoub
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0207205
The phosphorylation of sorting nexin 5 at serine 226 regulates retrograde transport and macropinocytosisCited by: 13
Author(s): Nao Itai, Tsukasa Shimazu, Takayuki Kimura, Issei Ibe, Ryo Yamashita, Yasushi Kaburagi, Taeko Dohi, Takashi Tonozuka, Toshifumi Takao, Atsushi Nishikawa
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0176694
Small molecule inhibitors of mesotrypsin from a structure-based docking screenCited by: 16
Author(s): Olumide Kayode, Zunnan Huang, Alexei S. Soares, Thomas R. Caulfield, Zigang Dong, Ann M. Bode, Evette S. Radisky
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0039093
Dissecting and Circumventing the Requirement for RAM in CSL-Dependent Notch SignalingCited by: 6
Author(s): Scott E. Johnson, Doug Barrick
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0047865
Solution Structure of a Phytocystatin from Ananas comosus and Its Molecular Interaction with PapainCited by: 17
Author(s): Deli Irene, Tse-Yu Chung, Bo-Jiun Chen, Ting-Hang Liu, Fengyin Li, Jason T. C. Tzen, Cheng‐I Wang, Chia-Lin Chyan
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0138221
A Novel AXIN2 Missense Mutation Is Associated with Non-Syndromic OligodontiaCited by: 18
Author(s): Haochen Liu, Tingting Ding, Yuan Zhan, Hailan Feng
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0034734
Insight on an Arginine Synthesis Metabolon from the Tetrameric Structure of Yeast Acetylglutamate KinaseCited by: 18
Author(s): Sergio de Cima, F. Gil-Ortiz, Marjolaine Crabeel, Ignacio Fita, Vicente Rubio
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0234152
S100A1 blocks the interaction between p53 and mdm2 and decreases cell proliferation activityCited by: 7
Author(s): Deepu Dowarha, Ruey Hwang Chou, Chin Yu
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0239364
Alkaloids of Abuta panurensis Eichler: In silico and in vitro study of acetylcholinesterase inhibition, cytotoxic and immunomodulatory activitiesCited by: 6
Author(s): Rochelly da Silva Mesquita, Andrii Kyrylchuk, Regiane Costa de Oliveira, Ingrity S.C. Sá, Gabriel Coutinho Borges Camargo, Gemilson Soares Pontes, Felipe M. A. da Silva, Rita de Cássia Saraiva Nunomura, Andriy Grafov
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0076687
Directed Evolution of Aminoglycoside Phosphotransferase (3′) Type IIIa Variants That Inactivate Amikacin but Impose Significant Fitness CostsCited by: 9
Author(s): Joseph R. Kramer, Ichiro Matsumura
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0000548
Structure and Evolutionary Origin of Ca2+-Dependent Herring Type II Antifreeze ProteinCited by: 72
Author(s): Yang Liu, Zhengjun Li, Qingsong Lin, Jan Kosiński, J. Seetharaman, Janusz M. Bujnicki, J. Sivaraman, Choy‐Leong Hew
Software Mentions: 1
Published: about 19 years ago
10.1371/journal.pone.0212687
Detection of ON1 and novel genotypes of human respiratory syncytial virus and emergence of palivizumab resistance in LebanonCited by: 23
Author(s): Hadi Abou-El-Hassan, Elie Massaad, Nadia Soudani, Aia Assaf‐Casals, Rouba Shaker, Mireille Lteif Khoury, Soha Ghanem, Maria Karam, Rabih R. Andary, Reiko Saito, Ghassan Dbaibo, Hassan Zaraket
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0146612
Comparative MD Simulations Indicate a Dual Role for Arg1323.50 in Dopamine-Dependent D2R ActivationCited by: 8
Author(s): Ralf C. Kling, Timothy Clark, Peter Gmeiner
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0203369
Insights on a putative aminoacyl-tRNA-protein transferase of Leishmania majorCited by: 0
Author(s): Rohit Sharma, Monica Terrao, Felipe Freitas-Castro, Reinhard Breitling, Vítor Marcel Faça, Eduardo B. Oliveira, Ângela K. Cruz
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0154198
SRPK1 and Akt Protein Kinases Phosphorylate the RS Domain of Lamin B Receptor with Distinct Specificity: A Combined Biochemical and In Silico ApproachCited by: 15
Author(s): Nikolaos Voukkalis, Maria Koutroumani, Christoforos Zarkadas, Eleni Nikolakaki, Metaxia Vlassi, Thomas Giannakouŕos
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0190545
S100B as an antagonist to block the interaction between S100A1 and the RAGE V domainCited by: 16
Author(s): Md. Imran Khan, Yu-Kai Su, Jinhao Zou, Lee‐Wei Yang, Ruey Hwang Chou, Chin Yu
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0085349
Identification of a New Epitope in uPAR as a Target for the Cancer Therapeutic Monoclonal Antibody ATN-658, a Structural Homolog of the uPAR Binding Integrin CD11b (αM)Cited by: 30
Author(s): Xiang Xu, Cai Yuan, Ying Wei, Fernando Doñate, Jose Juarez, Graham Parry, Liqing Chen, Edward J. Meehan, Richard W. Ahn, Andrey Ugolkov, Oleksii Dubrovskyi, Thomas V. O’Halloran, Mingdong Huang, Andrew P. Mazar
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0018142
A Computational Model of the LGI1 Protein Suggests a Common Binding Site for ADAM ProteinsCited by: 33
Author(s): Emanuela Leonardi, Simonetta Andreazza, Stefano Vanin, Giorgia Busolin, Carlo Nobile, Silvio C. E. Tosatto
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0044282
Insights into Phosphate Cooperativity and Influence of Substrate Modifications on Binding and Catalysis of Hexameric Purine Nucleoside PhosphorylasesCited by: 10
Author(s): P.O. Giuseppe, N.H. Martins, A.N. Meza, C.R. Santos, H.M. Pereira, Mário Tyago Murakami
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0007072
Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences OnlyCited by: 39
Author(s): Jiangning Song, Hao Tan, Khalid Mahmood, Ruby H. P. Law, Ashley M. Buckle, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock
Software Mentions: 1
Published: almost 17 years ago
10.1371/journal.pone.0081068
Inhibition of Nutlin-Resistant HDM2 Mutants by Stapled PeptidesCited by: 26
Author(s): Siau Jia Wei, Thomas L. Joseph, Sharon Chee, Ling Li, Larisa Yurlova, Kourosh Zolghadr, Christopher J. Brown, David P. Lane, Chandra Verma, Farid J. Ghadessy
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0085763
Disruption of TgPHIL1 Alters Specific Parameters of Toxoplasma gondii Motility Measured in a Quantitative, Three-Dimensional Live Motility AssayCited by: 64
Author(s): Jacqueline M. Leung, Mark A. Rould, Christoph Konradt, Christopher A. Hunter, Gary E. Ward
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0021532
Evolutionary Analysis of Novel Serine Proteases in the Venom Gland Transcriptome of Bitis gabonica rhinocerosCited by: 30
Author(s): Sakthivel Vaiyapuri, Simon C. Wagstaff, Robert A. Harrison, Jonathan M. Gibbins, E. Gail Hutchinson
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pone.0196797
A flavin-dependent halogenase from metagenomic analysis prefers bromination over chlorinationCited by: 55
Author(s): Pia R. Neubauer, Christiane Widmann, Daniel Wibberg, Lea Schröder, Marcel Frese, Tilman Kottke, Jörn Kalinowski, Hartmut H. Niemann, Norbert Sewald
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0048750
Immunization with a Hemagglutinin-Derived Synthetic Peptide Formulated with a CpG-DNA-Liposome Complex Induced Protection against Lethal Influenza Virus Infection in MiceCited by: 28
Author(s): Jae Won Rhee, Dongbum Kim, Byung Kwon Park, Sang-Hoon Kwon, Sunhee Cho, Ilseob Lee, Man Seong Park, Jae Nam Seo, Yong Sun Kim, Hong Seok Choi, Younghee Lee
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0109705
Computational Insights into the Inhibitory Mechanism of Human AKT1 by an Orally Active Inhibitor, MK-2206Cited by: 41
Author(s): Mohd Rehan, M.A. Beg, Shadma Parveen, Ghazi A. Damanhouri, Galila Zaher
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0060072
Structural Analysis of a Novel Cyclohexylamine Oxidase from Brevibacterium oxydans IH-35ACited by: 22
Author(s): I.A. Mirza, David L. Burk, Bing Xiong, Hiroaki Iwaki, Yoshie Hasegawa, Stephan Große, Peter C. K. Lau, Albert M. Berghuis
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0090445
Fine-Mapping of Immunodominant Linear B-Cell Epitopes of the Staphylococcus Aureus SEB Antigen Using Short Overlapping PeptidesCited by: 8
Author(s): Zhuo Zhao, Bin Li, Hongling Sun, Jinyong Zhang, Yilin Wang, Li Chen, Jian Hu, Yang He, Hao Zeng, Quanming Zou, Chao Wu
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0088809
Model of a DNA-Protein Complex of the Architectural Monomeric Protein MC1 from EuryarchaeaCited by: 7
Author(s): Françoise Paquet, Olivier Delalande, S. Goffinont, Françoise Culard, Karine Loth, Ulysse Asseline, B. Castaing, C. Landon
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0063452
Substrate Specificity Provides Insights into the Sugar Donor Recognition Mechanism of O-GlcNAc Transferase (OGT)Cited by: 28
Author(s): Xiaofeng Ma, Li Pi, Hui Yan, Hong Sun, Xiaoyan Liu, Feng Zheng, Lei Li, Yi Chen, Musleh M. Muthana, Xi Chen, Peng George Wang, Lianwen Zhang
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0201734
Designing bacterial signaling interactions with coevolutionary landscapesCited by: 8
Author(s): Ryan R. Cheng, Ellinor Haglund, Nicholas S. Tiee, Faruck Morcos, Herbert Levine, Joseph A. Adams, Patricia A. Jennings, José N. Onuchic
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0025560
Computational Prediction of Heme-Binding Residues by Exploiting Residue Interaction NetworkCited by: 39
Author(s): Rong Liu, Jianjun Hu
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0143107
Negative Feedbacks by Isoprenoids on a Mevalonate Kinase Expressed in the Corpora Allata of MosquitoesCited by: 12
Author(s): Pratik Nyati, Crisalejandra Rivera-Pérez, Fernando G. Noriega
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0020445
Identification of antifreeze proteins and their functional residues by support vector machine and genetic algorithms based on n-peptide compositions.Cited by: 31
Author(s): Chao Yu, Chih-Hao Lu
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0136239
Structure of the Glycosyltransferase Ktr4p from Saccharomyces cerevisiaeCited by: 7
Author(s): D.D.D. Possner, Magnus Claesson, Jodie E. Guy
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0066889
SERPINA2 Is a Novel Gene with a Divergent Function from SERPINA1Cited by: 6
Author(s): Patrícia Marques, Zélia Ferreira, Manuella Martins, Joana Figueiredo, Diana Isabel Silva, Patrícia Castro, Ramiro Morales‐Hojas, Joana Simões‐Correia, Susana Seixas
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0134056
N-Terminal Coiled-Coil Structure of ATPase Subunits of 26S Proteasome Is Crucial for Proteasome FunctionCited by: 8
Author(s): Tomonao Inobe, Reiko Genmei
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0006163
Discovery of a Novel Prolactin in Non-Mammalian Vertebrates: Evolutionary Perspectives and Its Involvement in Teleost Retina DevelopmentCited by: 45
Author(s): Xigui Huang, Michelle Hui, Yun Liu, Don Yuen, Yong Zhang, Wood Yee Chan, Haoran Lin, Shuk Han Cheng, Christopher H. K. Cheng
Software Mentions: 1
Published: almost 17 years ago
10.1371/journal.pone.0231542
Unveiling functional motions based on point mutations in biased signaling systems: A normal mode study on nerve growth factor bound to TrkACited by: 5
Author(s): Pedro T. Resende-Lara, David Pérahia, Ana Lígia Scott, Antônio Sérgio Kimus Braz
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0154056
New Cysteine-Rich Ice-Binding Protein Secreted from Antarctic Microalga, Chloromonas sp.Cited by: 17
Author(s): Woo‐Sik Jung, Robert L. Campbell, Yunho Gwak, Jong Im Kim, Peter L. Davies, EonSeon Jin
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0086083
Critical Amino Acids within the Human Immunodeficiency Virus Type 1 Envelope Glycoprotein V4 N- and C-Terminals Contribute to Virus EntryCited by: 12
Author(s): Yan Li, Dan Yang, Jiaye Wang, Yuan Yao, Weizhe Zhang, Lu-Jing Wang, De Cheng, Fengkun Yang, Fengmin Zhang, Min Zhuang, Hong Ling
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0033291
Characterization of a Novel Binding Protein for Fortilin/TCTP — Component of a Defense Mechanism against Viral Infection in Penaeus monodonCited by: 8
Author(s): Tanate Panrat, Patuma Sinthujaroen, Benjamas Nupan, Warapond Wanna, Martti T. Tammi, Amornrat Phongdara
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0100165
Insulin-Like Growth Factor 2 Silencing Restores Taxol Sensitivity in Drug Resistant Ovarian CancerCited by: 33
Author(s): Jurriaan Brouwer‐Visser, Jiyeon Lee, Kelly Anne McCullagh, M. Cossio, Yanhua Wang, Gloria S. Huang
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0146393
PLGA-Curcumin Attenuates Opioid-Induced Hyperalgesia and Inhibits Spinal CaMKIIαCited by: 16
Author(s): Xiaoyu Hu, Fang Huang, Magdalena Szymusiak, Xiaojing Tian, Ying Liu, Zaijie Jim Wang
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0156218
Crystal Structure of the FERM-SH2 Module of Human Jak2Cited by: 30
Author(s): Randall McNally, A.V. Toms, Michael J. Eck
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0135448
Structural Analysis of the Rubisco-Assembly Chaperone RbcX-II from Chlamydomonas reinhardtiiCited by: 13
Author(s): A. Bracher, Thomas R. Hauser, Cuimin Liu, F. Ulrich Hartl, Manajit Hayer‐Hartl
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0007258
Masitinib (AB1010), a Potent and Selective Tyrosine Kinase Inhibitor Targeting KITCited by: 329
Author(s): Patrice Dubreuil, Sébastien Létard, Marco A. Ciufolini, Laurent Gros, M. Humbert, Nathalie Castéran, Laurence Borge, Bérengère Hajem, Anne Lermet, Wolfgang Sippl, Edwige Voisset, Michel Arock, Christian Auclair, Phillip S. Leventhal, Colin D. Mansfield, Alain Moussy, Olivier Hermine
Software Mentions: 1
Published: almost 17 years ago
10.1371/journal.pone.0012029
Optimized Hydrophobic Interactions and Hydrogen Bonding at the Target-Ligand Interface Leads the Pathways of Drug-DesigningCited by: 313
Author(s): R. R. Patil, S. Das, Ashley Stanley, Lumbani Yadav, Akulapalli Sudhakar, Ashok K. Varma
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0060602
Mapping Enzymatic Catalysis Using the Effective Fragment Molecular Orbital Method: Towards all ab initio BiochemistryCited by: 33
Author(s): Casper Steinmann, Dmitri G. Fedorov, Jan H. Jensen
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0179983
Generation of a rabbit single-chain fragment variable (scFv) antibody for specific detection of Bradyrhizobium sp. DOA9 in both free-living and bacteroid formsCited by: 8
Author(s): Nguyễn Xuân Vũ, Natcha Pruksametanan, Witsanu Srila, Watcharin Yuttavanichakul, Kamonluck Teamtisong, Neung Teaumroong, Nantakorn Boonkerd, Panlada Tittabutr, Montarop Yamabhai
Software Mentions: 1
Published: about 9 years ago