10.7554/eLife.21600

Crenactin forms actin-like double helical filaments regulated by arcadin-2
Cited by: 31
Author(s): Thierry Izoré, Danguole Kureisaite-Ciziene, Stephen H. McLaughlin, Jan Löwe
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.02217

Structural basis for the assembly of the mitotic motor Kinesin-5 into bipolar tetramers
Cited by: 62
Author(s): Jonathan M. Scholey, Stanley Nithianantham, Jonathan M. Scholey, Jawdat Al-Bassam
Software Mentions: 2
Published: over 12 years ago

10.1107/S139900471402776X

Structures of the human Pals1 PDZ domain with and without ligand suggest gated access of Crb to the PDZ peptide-binding groove
Cited by: 24
Author(s): Marina E. Ivanova, Georgina Fletcher, Nicola O’Reilly, A. Purkiss, B. J. Thompson, Neil Q. McDonald
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.41028

Molecular basis of synaptic specificity by immunoglobulin superfamily receptors in Drosophila
Cited by: 31
Author(s): Sibo Cheng, James A. Ashley, J.D. Kurleto, Meike Lobb-Rabe, Yeonhee Jenny Park, Robert A. Carrillo, Engin Özkan
Software Mentions: 2
Published: over 7 years ago

10.3390/microorganisms9050893

Baicalein and Baicalin Inhibit SARS-CoV-2 RNA-Dependent-RNA Polymerase
Cited by: 70
Author(s): Keivan Zandi, Katie Musall, Adrian Oo, Dong Cao, Bo Liang, Pouya Hassandarvish, Shuiyun Lan, Ryan L. Slack, Karen A. Kirby, Leda Bassit, Franck Amblard, Baek Kim, Sazaly AbuBakar, Stefan G. Sarafianos, Raymond F. Schinazi
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.32952

SIRT2 deacetylase regulates the activity of GSK3 isoforms independent of inhibitory phosphorylation
Cited by: 36
Author(s): Mohsen Sarikhani, Sneha Mishra, Sangeeta Maity, Chaithanya Kotyada, Donald J. Wolfgeher, Mahesh P. Gupta, Mahavir Singh, Nagalingam R. Sundaresan
Software Mentions: 2
Published: over 8 years ago

10.1107/S2059798318018442

The atypical thiol–disulfide exchange protein α-DsbA2 from<i>Wolbachia pipientis</i>is a homotrimeric disulfide isomerase
Cited by: 4
Author(s): Patricia Walden, Andrew E. Whitten, Lakshmanane Premkumar, Maria A. Halili, Begoña Heras, G. J. King, Jennifer L. Martin
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.32963

Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima
Cited by: 31
Author(s): Ekaterina Morgunova, Yimeng Yin, Pratyush Kumar Das, Arttu Jolma, Fei Zhu, A. Popov, You Xu, Lennart Nilsson, Jussi Taipale
Software Mentions: 2
Published: over 8 years ago

10.3389/fmolb.2020.00029

Molecular Simulation of Oncostatin M and Receptor (OSM–OSMR) Interaction as a Potential Therapeutic Target for Inflammatory Bowel Disease
Cited by: 19
Author(s): Qingqing Du, Qian Yan, Weiwei Xue
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.03604

Structural basis of nucleoside and nucleoside drug selectivity by concentrative nucleoside transporters
Cited by: 49
Author(s): Z.L. Johnson, Jun-Ho Lee, Kiyoun Lee, Minhee Lee, Deok-Ho Kwon, Jiyong Hong, Seok‐Yong Lee
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmolb.2017.00068

Structure and Interactions of the TPR Domain of Sgt2 with Yeast Chaperones and Ybr137wp
Cited by: 18
Author(s): E. Krysztofinska, N.J. Evans, Arjun Thapaliya, James W. Murray, Rhodri M. L. Morgan, Santiago Martínez-Lumbreras, Rivka L. Isaacson
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.63524

Molecular structures of the eukaryotic retinal importer ABCA4
Cited by: 28
Author(s): Fangyu Liu, James Lee, Jue Chen
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.36340

Structural basis for potent and broad inhibition of HIV-1 RT by thiophene[3,2-d]pyrimidine non-nucleoside inhibitors
Cited by: 53
Author(s): Yang Yang, Dongwei Kang, Laura A. Nguyen, Z.B. Smithline, Christophe Pannecouque, Peng Zhan, Xinyong Liu, Thomas A. Steitz
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.00184

Distinct gating mechanisms revealed by the structures of a multi-ligand gated K+ channel
Cited by: 22
Author(s): Chunguang Kong, Weizhong Zeng, Sheng Ye, Liping Chen, David Sauer, Y. Amy Lam, M.G. Derebe, Youxing Jiang
Software Mentions: 2
Published: over 13 years ago

10.7554/eLife.06792

Acidic pH and divalent cation sensing by PhoQ are dispensable for systemic salmonellae virulence
Cited by: 26
Author(s): Kevin G. Hicks, Scott P. Delbecq, Enea Sancho‐Vaello, Marie-Pierre Blanc, Katja K. Dove, Lynne R. Prost, Margaret E. Daley, Kornelius Zeth, Rachel E. Klevit, Samuel I. Miller
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0089027

Distinct Structural Features of the Peroxide Response Regulator from Group A Streptococcus Drive DNA Binding
Cited by: 13
Author(s): Chang Hong Lin, Shi-Yu Chao, Michal Hammel, Jay C. Nix, Hsiao-Ling Tseng, Chih-Cheng Tsou, Chun-Hsien Fei, Huo-Sheng Chiou, U‐Ser Jeng, Yee‐Shin Lin, Woei‐Jer Chuang, Jiunn-Jong Wu, Shuying Wang
Software Mentions: 2
Published: over 12 years ago

10.1107/S205979832001133X

Helical ensembles outperform ideal helices in molecular replacement
Cited by: 2
Author(s): Filomeno Sánchez Rodríguez, Adam J Simpkin, Owen R. Davies, Ronan Keegan, Daniel J. Rigden
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmolb.2021.716466

SeamDock: An Interactive and Collaborative Online Docking Resource to Assist Small Compound Molecular Docking
Cited by: 17
Author(s): Samuel Murail, Sjoerd J. de Vries, Julien Rey, Gautier Moroy, Pierre Tufféry
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0021614

LRR Conservation Mapping to Predict Functional Sites within Protein Leucine-Rich Repeat Domains
Cited by: 47
Author(s): Laura Helft, V. Dashwantha Reddy, Xiyang Chen, Teresa Koller, L. Federici, Juan Fernández‐Recio, Rishabh Gupta, Andrew F. Bent
Software Mentions: 2
Published: almost 15 years ago

10.7554/eLife.00482

Mechanism for priming DNA synthesis by yeast DNA Polymerase α
Cited by: 89
Author(s): Rajika L. Perera, Rubben Torella, Sebastian Klinge, M.L. Kilkenny, Joseph D. Maman, Luca Pellegrini
Software Mentions: 2
Published: over 13 years ago

10.1107/S2059798317016618

Molecular architectures of benzoic acid-specific type III polyketide synthases
Cited by: 11
Author(s): Charles Stewart, Kate Woods, Greg Macias, Andrew C. Allan, Roger P. Hellens, Joseph P. Noel
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.17983

Structures of TorsinA and its disease-mutant complexed with an activator reveal the molecular basis for primary dystonia
Cited by: 53
Author(s): F. Esra Demircioglu, Brian A Sosa, Jessica R. Ingram, Hidde L. Ploegh, Thomas Schwartz
Software Mentions: 2
Published: almost 10 years ago

10.7554/eLife.65545

Dwarf open reading frame (DWORF) is a direct activator of the sarcoplasmic reticulum calcium pump SERCA
Cited by: 28
Author(s): M'Lynn E Fisher, Elisa Bovo, Rodrigo Aguayo‐Ortiz, Ellen E. Cho, Marsha P. Pribadi, Michael P. Dalton, Nishadh Rathod, M. Joanne Lemieux, L. Michel Espinoza-Fonseca, Seth L. Robia, Aleksey V. Zima, Howard S. Young
Software Mentions: 2
Published: about 5 years ago

10.1107/S205979832100632X

Structure of the unique tetrameric STENOFOLIA homeodomain bound with target promoter DNA
Cited by: 1
Author(s): Prabhat Kumar Pathak, Fei Zhang, Shu‐Lin Peng, Lifang Niu, Juhi Chaturvedi, Justin Elliott, Yan Xiang, Million Tadege, Junpeng Deng
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0158702

Membrane Mediated Antimicrobial and Antitumor Activity of Cathelicidin 6: Structural Insights from Molecular Dynamics Simulation on Multi-Microsecond Scale
Cited by: 13
Author(s): Bikash R. Sahoo, Toshimichi Fujiwara
Software Mentions: 2
Published: about 10 years ago

10.3389/fmolb.2015.00056

A script to highlight hydrophobicity and charge on protein surfaces
Cited by: 83
Author(s): Dominique Hagemans, Ianthe A. E. M. van Belzen, Tania Morán Luengo, Stefan Rüdiger
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.42150

Structural organization of a major neuronal G protein regulator, the RGS7-Gβ5-R7BP complex
Cited by: 17
Author(s): Dipak N. Patil, Erumbi S. Rangarajan, Scott J. Novick, Bruce D. Pascal, D.J. Kojetin, Patrick R. Griffin, Tina Izard, Kirill A. Martemyanov
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.48847

A single H/ACA small nucleolar RNA mediates tumor suppression downstream of oncogenic RAS
Cited by: 78
Author(s): Mary McMahon, Adrian Contreras, Mikael Holm, Tamayo Uechi, Craig M. Forester, Xiaming Pang, Cody B. Jackson, Meredith Calvert, Bin Chen, David A. Quigley, John M. Luk, R. K. Kelley, John D. Gordan, Ryan M. Gill, Scott C. Blanchard, Davide Ruggero
Software Mentions: 2
Published: almost 7 years ago

10.1107/S0907444913018453

Application of the<i>AMPLE</i>cluster-and-truncate approach to NMR structures for molecular replacement
Cited by: 13
Author(s): Jaclyn Bibby, Ronan Keegan, Olga Mayans, Martyn Winn, Daniel J. Rigden
Software Mentions: 2
Published: over 12 years ago

10.7554/eLife.68710

Structure of Escherichia coli respiratory complex I reconstituted into lipid nanodiscs reveals an uncoupled conformation
Cited by: 34
Author(s): P. Kolata, Rouslan G. Efremov
Software Mentions: 2
Published: almost 5 years ago

10.1093/milmed/usz299

Towards a Treatment for Gulf War Illness: A Consensus Docking Approach
Cited by: 1
Author(s): Rajeev Jaundoo, Jonathan Bohmann, Gloria Gutiérrez, Nancy G. Klimas, Gordon Broderick, Travis J. A. Craddock
Software Mentions: 2
Published: over 6 years ago

10.1186/1759-8753-5-25

Molecular characterization of a new member of the lariat capping twin-ribozyme introns
Cited by: 13
Author(s): Yunjia Tang, Hans Bruun Nielsen, Benoı̂t Masquida, Paul P. Gardner, Steinar Johansen
Software Mentions: 2
Published: almost 12 years ago

10.7554/eLife.32471

MreB filaments align along greatest principal membrane curvature to orient cell wall synthesis
Cited by: 157
Author(s): Saman Hussain, Carl N. Wivagg, Piotr Szwedziak, Felix Wong, Kaitlin Schaefer, Thierry Izoré, Lars D. Renner, Matthew J Holmes, Yingjie Sun, Alexandre W. Bisson‐Filho, Suzanne Walker, Ariel Amir, Jan Löwe, Ethan C. Garner
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.51511

Modulation of the Erwinia ligand-gated ion channel (ELIC) and the 5-HT3 receptor via a common vestibule site
Cited by: 13
Author(s): Marijke Brams, Cédric Govaerts, Kumiko Kambara, Kerry L. Price, Radovan Spurný, Anant Gharpure, Els Pardon, G.L. Evans, Daniel Bertrand, Sarah S.C.R. Lummis, Ryan Hibbs, Jan Steyaert, Chris Ulens
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.32866

Mfn2 ubiquitination by PINK1/parkin gates the p97-dependent release of ER from mitochondria to drive mitophagy
Cited by: 243
Author(s): Gian‐Luca McLelland, Thomas Goiran, Wei Yi, Geneviève Dorval, Carol X Chen, Nadine Lauinger, Andrea I Krahn, Sepideh Valimehr, Aleksandar Raković, Isabelle Rouiller, Thomas M. Durcan, Jean‐François Trempe, Edward A. Fon
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.32893

IRS-1 acts as an endocytic regulator of IGF-I receptor to facilitate sustained IGF signaling
Cited by: 39
Author(s): Yoshimasa Yoneyama, Peter Lanzerstorfer, Hideaki Niwa, Takashi Umehara, Takashi Shibano, Shigeyuki Yokoyama, Kazuhiro Chida, Julian Weghuber, Fumihiko Hakuno, Shinichiro Takahashi
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.11050

Photo-switchable tweezers illuminate pore-opening motions of an ATP-gated P2X ion channel
Cited by: 31
Author(s): Chloé Habermacher, Adeline Martz, Nicolas Calimet, Damien Lemoine, Laurie Peverini, Alexandre Specht, Marco Cecchini, Thomas Grütter
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.28384

Cryo-EM structure of the SAGA and NuA4 coactivator subunit Tra1 at 3.7 angstrom resolution
Cited by: 35
Author(s): Luis Miguel Díaz-Santín, Natalya Lukoyanova, Emir Aciyan, Alan C. M. Cheung
Software Mentions: 2
Published: almost 9 years ago

10.3389/fnmol.2014.00051

In silico, in vitro and cellular analysis with a kinome-wide inhibitor panel correlates cellular LRRK2 dephosphorylation to inhibitor activity on LRRK2
Cited by: 46
Author(s): Renée Vancraenenbroeck, Joren De Raeymaecker, Evy Lobbestael, Fangye Gao, Marc De Maeyer, Arnout Voet, Veerle Baekelandt, Jean-Marc Taymans
Software Mentions: 2
Published: about 12 years ago

10.1021/acschembio.1c00433

Reconstitution and Structural Analysis of a HECT Ligase-Ubiquitin Complex via an Activity-Based Probe
Cited by: 10
Author(s): Raji R. Nair, Ayshwarya Seenivasan, Bing Liu, Dan Chen, E.D. Lowe, Sonja Lorenz
Software Mentions: 2
Published: almost 5 years ago

10.1107/S0907444913021811

SCEDS: protein fragments for molecular replacement in<i>Phaser</i>
Cited by: 16
Author(s): Airlie J. McCoy, Robert A. Nicholls, Thomas R. Schneider
Software Mentions: 2
Published: almost 13 years ago

10.3389/fnmol.2018.00113

The LILI Motif of M3-S2 Linkers Is a Component of the NMDA Receptor Channel Gate
Cited by: 24
Author(s): Marek Ladislav, Jiří Černý, Jan Krůšek, Martin Hořák, Aleš Balík, Ladislav Vyklicky
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.68829

Analysis of the PcrA-RNA polymerase complex reveals a helicase interaction motif and a role for PcrA/UvrD helicase in the suppression of R-loops
Cited by: 15
Author(s): Íñigo Urrutia-Irazábal, James R. Ault, Frank Sobott, Nigel J. Savery, Mark S. Dillingham
Software Mentions: 2
Published: almost 5 years ago

10.3389/fnmol.2018.00330

Molecular Details of Retinal Guanylyl Cyclase 1/GCAP-2 Interaction
Cited by: 9
Author(s): Anne Rehkamp, Dirk Tänzler, Claudio Iacobucci, Ralph Golbik, Christian Ihling, Andrea Sinz
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0050097

Structure of the Human Discs Large 1 PDZ2– Adenomatous Polyposis Coli Cytoskeletal Polarity Complex: Insight into Peptide Engagement and PDZ Clustering
Cited by: 8
Author(s): Kevin C. Slep
Software Mentions: 2
Published: over 13 years ago

10.7554/eLife.37373

Evolution of cation binding in the active sites of P-loop nucleoside triphosphatases in relation to the basic catalytic mechanism
Cited by: 35
Author(s): Daria N. Shalaeva, Dmitry A. Cherepanov, Michael Y. Galperin, Andrey V. Golovin, Armen Y. Mulkidjanian
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.62518

Structure of bacterial phospholipid transporter MlaFEDB with substrate bound
Cited by: 42
Author(s): Nicolas Coudray, Georgia L. Isom, M.R. MacRae, Mariyah N. Saiduddin, Gira Bhabha, D.C. Ekiert
Software Mentions: 2
Published: over 5 years ago

10.1107/S0907444913001479

Robust structural analysis of native biological macromolecules from multi-crystal anomalous diffraction data
Cited by: 79
Author(s): Qun Li, Qinglian Liu, Wayne A. Hendrickson
Software Mentions: 2
Published: about 13 years ago

10.1107/S2059798319000081

Engineered variants provide new insight into the structural properties important for activity of the highly dynamic, trimeric protein disulfide isomerase ScsC from Proteus mirabilis
Cited by: 5
Author(s): Emily Furlong, Fabian Kurth, Lakshmanane Premkumar, Andrew E. Whitten, Jennifer L. Martin
Software Mentions: 2
Published: over 7 years ago

10.1093/molbev/msab017

Bridging Themes: Short Protein Segments Found in Different Architectures
Cited by: 30
Author(s): Rachel Kolodny, Sergey Nepomnyachiy, Dan S. Tawfik, Nir Ben‐Tal
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms19051336

The Expression Pattern of PLIN2 in Differentiated Adipocytes from Qinchuan Cattle Analysis of Its Protein Structure and Interaction with CGI-58
Cited by: 12
Author(s): Peiwei Li, Yaning Wang, Le Zhang, Yue Ning, Zan Liu
Software Mentions: 2
Published: about 8 years ago

10.1107/S0907444913025250

Improvements in the order, isotropy and electron density of glypican-1 crystals by controlled dehydration
Cited by: 13
Author(s): W. Awad, Gabriel Svensson Birkedal, Marjolein M.G.M. Thunnissen, Katrin Mani, D.T. Logan
Software Mentions: 2
Published: over 12 years ago

10.1002/advs.201800275

Origin, Genetic Diversity, and Evolutionary Dynamics of Novel Porcine Circovirus 3
Cited by: 85
Author(s): Gairu Li, Wanting He, Henan Zhu, Yang Bi, Ruyi Wang, Gang Xing, Cheng Zhang, Jiyong Zhou, Kwok‐Yung Yuen, George F. Gao, Shuo Su
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0011092

Modelling the Response of FOXO Transcription Factors to Multiple Post-Translational Modifications Made by Ageing-Related Signalling Pathways
Cited by: 35
Author(s): Graham R. Smith, Daryl P. Shanley
Software Mentions: 2
Published: about 16 years ago

10.3390/ijms19092772

Insight into the Self-Assembling Properties of Peptergents: A Molecular Dynamics Simulation Study
Cited by: 3
Author(s): Jean-Marc Crowet, Mehmet Nail Nasir, Nicolas Dony, Antoine Deschamps, Vincent Stroobant, Pierre Morsomme, Magali Deleu, Patrice Soumillion, Laurence Lins
Software Mentions: 2
Published: almost 8 years ago

10.1107/S2059798317006349

Crystal structure of<i>Yersinia pestis</i>virulence factor YfeA reveals two polyspecific metal-binding sites
Cited by: 14
Author(s): C.D. Radka, Lawrence J. DeLucas, Landon Wilson, Matthew B. Lawrenz, Robert D. Perry, Stephen G. Aller
Software Mentions: 2
Published: about 9 years ago

10.1186/1756-6606-4-28

Impairment of adult hippocampal neural progenitor proliferation by methamphetamine: role for nitrotyrosination
Cited by: 49
Author(s): Arun Venkatesan, Lerna Uzasci, Zhaohui Chen, Labchan Rajbhandari, Carol Anderson, Myoung Hwa Lee, M.A. Bianchet, Robert J. Cotter, Hongjun Song, Avindra Nath
Software Mentions: 2
Published: over 15 years ago

10.18632/aging.103775

Coupled immune stratification and identification of therapeutic candidates in patients with lung adenocarcinoma
Cited by: 9
Author(s): Wenquan Hu, Guosheng Wang, Yundi Chen, Lonny Yarmus, Biao Liu, Yuan Wan
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0043019

Structures of Human DPP7 Reveal the Molecular Basis of Specific Inhibition and the Architectural Diversity of Proline-Specific Peptidases
Cited by: 23
Author(s): G.A. Bezerra, E. Dobrovetsky, Aiping Dong, Almagul Seitova, Lissete Crombett, Lisa M. Shewchuk, Annie M. Hassell, Sharon Sweitzer, Thomas D. Sweitzer, Patrick McDevitt, Kyung Johanson, Karen M. Kennedy-Wilson, D. Cossar, A. Bochkarev, Karl Gruber, Sirano Dhe‐Paganon
Software Mentions: 2
Published: almost 14 years ago

10.1186/s12906-018-2116-x

Computational investigations of physicochemical, pharmacokinetic, toxicological properties and molecular docking of betulinic acid, a constituent of Corypha taliera (Roxb.) with Phospholipase A2 (PLA2)
Cited by: 37
Author(s): Mohammad Firoz Khan, Nusrat Nahar, Ridwan Bin Rashid, A. K. Chowdhury, Mohammad A. Rashid
Software Mentions: 2
Published: over 8 years ago

10.18632/aging.203098

Revealing the therapeutic targets and molecular mechanisms of emodin-treated coronavirus disease 2019 via a systematic study of network pharmacology
Cited by: 13
Author(s): Haixia Du, Jiaqi Zhu, Jing Chen, Huifen Zhou, Jiehong Yang, Haitong Wan
Software Mentions: 2
Published: about 5 years ago

10.1186/s12906-015-0588-5

Molecular docking studies of (4Z, 12Z)-cyclopentadeca-4, 12-dienone from Grewia hirsuta with some targets related to type 2 diabetes
Cited by: 36
Author(s): Abirami Natarajan, Shanmugam Shobana, B. Sivakumar, Natarajan Balasubramanyan
Software Mentions: 2
Published: over 11 years ago

10.3390/ijms19113579

Novel Findings of Anti-Filarial Drug Target and Structure-Based Virtual Screening for Drug Discovery
Cited by: 7
Author(s): Tae Woo Choi, Jeong Hoon Cho, Joohong Ahnn, Hyun Ok Song
Software Mentions: 2
Published: over 7 years ago

10.1107/S2059798319010878

X-ray structure of the direct electron transfer-type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein
Cited by: 17
Author(s): Hiromi Yoshida, Katsuhiro Kojima, Masaki Shiota, Keiichi Yoshimatsu, Tomohiko Yamazaki, Stefano Ferri, Wakako Tsugawa, Shigehiro Kamitori, Koji Sode
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.molcel.2018.08.039

Substrate Recognition and Autoinhibition in the Central Ribonuclease RNase E
Cited by: 35
Author(s): Katarzyna Bandyra, J.M. Wandzik, Ben F. Luisi
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms19113405

Enriched Conformational Sampling of DNA and Proteins with a Hybrid Hamiltonian Derived from the Protein Data Bank
Cited by: 3
Author(s): Emanuel K. Peter, Jiří Černý
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms19113355

Using a Consensus Docking Approach to Predict Adverse Drug Reactions in Combination Drug Therapies for Gulf War Illness
Cited by: 13
Author(s): Rajeev Jaundoo, Jonathan Bohmann, Gloria Gutiérrez, Nancy G. Klimas, Gordon Broderick, Travis J. A. Craddock
Software Mentions: 2
Published: over 7 years ago

10.1016/j.molcel.2020.06.013

Structure of the Inhibited State of the Sec Translocon
Cited by: 42
Author(s): S. Gerard, Belinda S. Hall, A. Zaki, Katherine Corfield, Peter Mayerhofer, Catia Costa, Daniel K. Whelligan, Philip C. Biggin, Rachel E. Simmonds, M.K. Higgins
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0076803

Elucidation of Substrate Specificity in Aspergillus nidulans UDP-Galactose-4-Epimerase
Cited by: 7
Author(s): Sean A. Dalrymple, Jennifer S. Ko, I. S. Sheoran, Susan G. W. Kaminskyj, D.A.R. Sanders
Software Mentions: 2
Published: almost 13 years ago

10.3389/fonc.2021.606820

Interpreting Sequence Variation in PDAC-Predisposing Genes Using a Multi-Tier Annotation Approach Performed at the Gene, Patient, and Cohort Level
Cited by: 3
Author(s): Michael T. Zimmermann, Angela Mathison, Tim Stodola, Douglas B. Evans, Jenica Abrudan, Wendy Demos, Michael Tschannen, Mohammed Aldakkak, Jennifer L. Geurts, Gwen Lomberk, Susan Tsai, Raúl Urrutia
Software Mentions: 2
Published: over 5 years ago

10.1186/s12862-021-01819-4

Searching for signatures of positive selection in cytochrome b gene associated with subterranean lifestyle in fast-evolving arvicolines (Arvicolinae, Cricetidae, Rodentia)
Cited by: 5
Author(s): Olga Bondareva, Nadezhda A. Potapova, Kirill A. Konovalov, Tatyana V. Petrova, Natalia I. Abramson
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0139137

Engineering Streptavidin and a Streptavidin-Binding Peptide with Infinite Binding Affinity and Reversible Binding Capability: Purification of a Tagged Recombinant Protein to High Purity via Affinity-Driven Thiol Coupling
Cited by: 10
Author(s): Dawson Fogen, Sau‐Ching Wu, Kenneth Ng, Sui‐Lam Wong
Software Mentions: 2
Published: almost 11 years ago

10.1016/j.molcel.2009.09.038

An Autoinhibitory Tyrosine Motif in the Cell-Cycle-Regulated Nek7 Kinase Is Released through Binding of Nek9
Cited by: 86
Author(s): Mark W. Richards, Laura O’Regan, Corine Mas-Droux, Joëlle Blot, Jack Cheung, Swen Hoelder, Andrew M. Fry, Richard Bayliss
Software Mentions: 2
Published: over 16 years ago

10.3389/fonc.2019.01294

p38α Mitogen-Activated Protein Kinase Is a Druggable Target in Pancreatic Adenocarcinoma
Cited by: 19
Author(s): Ling Yang, Xiaoting Sun, Ying Ye, Yongtian Lu, Jiane Zuo, Wen Li, Adrian H. Elcock, Shun Zhu
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0255736

Network pharmacology and molecular docking reveal the effective substances and active mechanisms of Dalbergia Odoriferain protecting against ischemic stroke
Cited by: 3
Author(s): Kedi Liu, Xingru Tao, Jing Su, Fĕi Li, Fei Mu, S. J. Zhao, Xinming Lu, Jing Li, Sha Chen, Taiwei Dong, Jialin Duan, Peifeng Wei, Miaomiao Xi
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0210842

Potent, multi-target serine protease inhibition achieved by a simplified β-sheet motif
Cited by: 7
Author(s): Xingchen Chen, Blake T. Riley, Simon J. de Veer, David E. Hoke, Jessica Van Haeften, Darren Leahy, Joakim E. Swedberg, Maria Brattsand, Perry J. Hartfield, Ashley M. Buckle, Jonathan M. Harris
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms20061392

Crystal Structure of the Cyclostreptin-Tubulin Adduct: Implications for Tubulin Activation by Taxane-Site Ligands
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Author(s): Francisco de Asís Balaguer, Tobias Mühlethaler, Juan Estévez-Gallego, Enrique Calvo, Juan F. Giménez-Abián, April L. Risinger, Erik J. Sorensen, Christopher D. Vanderwal, Karl‐Heinz Altmann, Susan L. Mooberry, Michel O. Steinmetz, M.A. Oliva, A.E. Prota, J. Fernando Díaz
Software Mentions: 2
Published: over 7 years ago

10.3389/fped.2019.00343

Biallelic Missense Mutation in the ECEL1 Underlies Distal Arthrogryposis Type 5 (DA5D)
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Author(s): Muhammad Umair, Amjad Khan, Amir Hayat, Safdar Abbas, Abdulaziz Asiri, Muhammad Younus, Wajid Amin, Shoaib Nawaz, Shazia Khan, Erum Malik, Majid Alfadhel, Farooq Ahmad
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms20071666

A Molecular Dynamics Approach to Explore the Intramolecular Signal Transduction of PPAR-α
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Author(s): Shaherin Basith, Balachandran Manavalan, Tae Hwan Shin, Gwang Lee
Software Mentions: 2
Published: over 7 years ago

10.1107/S2059798321006513

Exploring ligand dynamics in protein crystal structures with ensemble refinement
Cited by: 3
Author(s): Octav Caldararu, Vilhelm Ekberg, D.T. Logan, Esko Oksanen, Ulf Ryde
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms20081943

Non-Cryogenic Structure and Dynamics of HIV-1 Integrase Catalytic Core Domain by X-ray Free-Electron Lasers
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Author(s): Jae-Hyun Park, Ji-Hye Yun, Yingchen Shi, Jeong A. Han, Xuanxuan Li, Zeyu Jin, Tae-Hee Kim, Jaehyun Park, Sehan Park, Haiguang Liu, Weontae Lee
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0097519

Differential Effects of CSF-1R D802V and KIT D816V Homologous Mutations on Receptor Tertiary Structure and Allosteric Communication
Cited by: 11
Author(s): Priscila da Silva Figueiredo Celestino Gomes, Nicolas Panel, Élodie Laine, Pedro Geraldo Pascutti, Éric Solary, Luba Tchertanov
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0225244

Establishment of the experimental procedure for prediction of conjugation capacity in mutant UGT1A1
Cited by: 5
Author(s): Yutaka Takaoka, Atsuko Takeuchi, Aki Sugano, Kenji Miura, Mika Ohta, Takashi Suzuki, Daisuke Kobayashi, Takuji Kimura, Juichi Sato, Nobutaro Ban, Hisahide Nishio, Toshiyuki Sakaeda
Software Mentions: 2
Published: over 6 years ago

10.3389/fphar.2020.00526

Kaempferol, a Major Flavonoid in Ginkgo Folium, Potentiates Angiogenic Functions in Cultured Endothelial Cells by Binding to Vascular Endothelial Growth Factor
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Author(s): Weihui Hu, Huaiyou Wang, Yiteng Xia, Diana Dai, Qingping Xiong, Tina Tingxia Dong, Ran Duan, Gallant Kar-Lun Chan, Qi Qin, Karl Wah-Keung Tsim
Software Mentions: 2
Published: about 6 years ago

10.1016/j.molcel.2019.06.037

Osh Proteins Control Nanoscale Lipid Organization Necessary for PI(4,5)P2 Synthesis
Cited by: 47
Author(s): Taki Nishimura, Michael Gecht, Roberto Covino, Gerhard Hummer, Michał A. Surma, Christian Klose, Hiroyuki Arai, Nozomu Kono, Christopher J. Stefan
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.molcel.2021.03.020

Non-canonical autophagy drives alternative ATG8 conjugation to phosphatidylserine
Cited by: 84
Author(s): Joanne Durgan, Alf Håkon Lystad, Katherine E. Sloan, Sven R. Carlsson, Michael Wilson, Elena Marcassa, Rachel Ulferts, Judith Webster, Andrea F. Lopez-Clavijo, Michael J.O. Wakelam, Rupert Beale, Anne Simonsen, David Oxley, Oliver Florey
Software Mentions: 2
Published: about 5 years ago

10.1016/j.molcel.2012.05.004

A Death Effector Domain Chain DISC Model Reveals a Crucial Role for Caspase-8 Chain Assembly in Mediating Apoptotic Cell Death
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Author(s): Laura S. Dickens, Robert S. Boyd, Rebekah Jukes-Jones, Michelle A. Hughes, Gemma L. Robinson, Louise Fairall, John W. R. Schwabe, Kelvin Cain, Marion MacFarlane
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0061327

Prospecting for Novel Plant-Derived Molecules of Rauvolfia serpentina as Inhibitors of Aldose Reductase, a Potent Drug Target for Diabetes and Its Complications
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Author(s): Shivalika Pathania, Vinay Randhawa, Ganesh Bagler
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0020864

Identification of the Allosteric Regulatory Site of Insulysin
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Author(s): Nicholas Noinaj, Sonia K. Bhasin, Eun Suk Song, Kirsten E. Scoggin, María A. Juliano, Luiz Juliano, Louis B. Hersh, David W. Rodgers
Software Mentions: 2
Published: about 15 years ago

10.1107/S2059798319011938

The flavin mononucleotide cofactor in α-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level
Cited by: 2
Author(s): S.Y. Lyu, Kuan Hung Lin, Hsien‐Wei Yeh, Yi Shan Li, Chun Man Huang, Yung Lin Wang, Hao Wei Shih, N.S. Hsu, Chang Jer Wu, Tsung Lin Li
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.molcel.2018.02.023

Discovery and Characterization of ZUFSP/ZUP1, a Distinct Deubiquitinase Class Important for Genome Stability
Cited by: 130
Author(s): Dominika Kwaśna, S.A. Abdul Rehman, N. Jayaprakash, S. Matthews, Ross Madden, Virginia De Cesare, Simone Weidlich, Satpal Virdee, Ivan Ahel, Ian Gibbs-Seymour, Yogesh Kulathu
Software Mentions: 2
Published: over 8 years ago

10.3389/fphar.2020.00246

Structure-Based Screening of Plasmodium berghei Glutathione S-Transferase Identifies CB-27 as a Novel Antiplasmodial Compound
Cited by: 5
Author(s): Emilee E. Colón-Lorenzo, Daisy D. Colón-López, Joel Vega-Rodríguez, Alice Dupin, David A. Fidock, Abel Baerga‐Ortiz, José G. Ortíz, Jürgen Bosch, Adelfa E. Serrano
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0006820

The Crystal Structure of the Escherichia coli Autoinducer-2 Processing Protein LsrF
Cited by: 17
Author(s): Zamia Diaz, Karina B. Xavier, Stephen T. Miller
Software Mentions: 2
Published: almost 17 years ago

10.1016/j.molcel.2017.08.020

Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling
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Author(s): Martin A. Michel, Kirby N. Swatek, Manuela K. Hospenthal, David Komander
Software Mentions: 2
Published: almost 9 years ago

10.1107/S2059798315022482

Initiating heavy-atom-based phasing by multi-dimensional molecular replacement
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Author(s): Bjørn Panyella Pedersen, Pontus Gourdon, Xiangyu Liu, Jesper Lykkegaard Karlsen, Poul Nissen
Software Mentions: 2
Published: over 10 years ago

10.3389/fphar.2018.00008

Suppressive Effects of Clerodendrum volubile P Beauv. [Labiatae] Methanolic Extract and Its Fractions on Type 2 Diabetes and Its Complications
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Author(s): Ochuko L. Erukainure, Rahman M. Hafizur, Nurul Kabir, M. Iqbal Choudhary, Olubunmi Atolanı, Priyanka Banerjee, Robert Preißner, Chika I. Chukwuma, Aliyu Muhammad, Eric O. Amonsou, Md. Shahidul Islam
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms20205085

Crystal Structure-Based Exploration of Arginine-Containing Peptide Binding in the ADP-Ribosyltransferase Domain of the Type III Effector XopAI Protein
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Author(s): Jyung-Hurng Liu, Jun-Yi Yang, Duen-Wei Hsu, Yi-Hua Lai, Yun-Pei Li, Yi-Rung Tsai, Ming-Hon Hou
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20225713

Antimicrobial Peptides as Anti-Infective Agents in Pre-Post-Antibiotic Era?
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Author(s): Tomislav Rončević, Jasna Puizina, Alessandro Tossi
Software Mentions: 2
Published: over 6 years ago

10.1107/S2059798318009397

High-pressure protein crystal structure analysis of <i>Escherichia coli</i> dihydrofolate reductase complexed with folate and NADP⁺
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Author(s): T. Nagae, Hiroyuki Yamada, Nobuhisa Watanabe
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms20225796

Carotenoid Cleavage Dioxygenases: Identification, Expression, and Evolutionary Analysis of This Gene Family in Tobacco
Cited by: 24
Author(s): Qianqian Zhou, Qingchang Li, Peng Li, Songtao Zhang, Che Liu, Jingjing Jin, Peijian Cao, Yongxia Yang
Software Mentions: 2
Published: over 6 years ago