10.1002/jcc.26559

<scp> <i>MonteCarbo</i> </scp> : A software to generate and dock multifunctionalized ring molecules
Cited by: 0
Author(s): Santiago Alonso-Gil
Software Mentions: 2
Published: over 5 years ago

10.1242/dmm.043307

Temperature sensitive SMA-causing point mutations lead to SMN instability, locomotor defects, and premature lethality in Drosophila
Cited by: 4
Author(s): Amanda C. Raimer, S. S. Singh, Maina R. Edula, Tamara Paris-Davila, Vasudha Vandadi, Ashlyn M. Spring, A. Gregory Matera
Software Mentions: 2
Published: almost 7 years ago

10.1042/BSR20140174

Structural characterization of the late competence protein ComFB from <i>Bacillus subtilis</i>
Cited by: 9
Author(s): Tatyana A. Sysoeva, Lukas B. Bane, Di Xiao, Baundauna Bose, Scott Chilton, Rachelle Gaudet, Briana M. Burton
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2018.01942

Look and Outlook on Enzyme-Mediated Macrolide Resistance
Cited by: 66
Author(s): Tolou Golkar, Michał Zieliński, A.M. Berghuis
Software Mentions: 2
Published: about 8 years ago

10.1016/j.celrep.2019.11.025

On-Site Ribosome Remodeling by Locally Synthesized Ribosomal Proteins in Axons
Cited by: 95
Author(s): Toshiaki Shigeoka, Max Koppers, Hovy Ho-Wai Wong, Julie Qiaojin Lin, Roberta Cagnetta, Asha Dwivedy, Janaína de Freitas Nascimento, Francesca W. van Tartwijk, Florian Ströhl, Jean-Michel Cioni, Julia Schaeffer, Mark Carrington, Clemens F. Kaminski, Hosung Jung, William A. Harris, Christine E. Holt
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0245822

Sequence and structure comparison of ATP synthase F0 subunits 6 and 8 in notothenioid fish
Cited by: 3
Author(s): Gunjan Katyal, Brad Ebanks, Magnus Lucassen, Chiara Papetti, Lisa Chakrabarti
Software Mentions: 2
Published: about 5 years ago

10.15252/embj.2019103889

Proteasomal degradation induced by DPP9‐mediated processing competes with mitochondrial protein import
Cited by: 21
Author(s): Yannik Finger, Markus Habich, Sarah Gerlich, Sophia Urbanczyk, Erik van de Logt, Julian Koch, Laura Schu, Kim Jasmin Lapacz, Muna Ali, Carmelina Petrungaro, Silja Lucia Salscheider, C. Pichlo, Ulrich Baumann, Dirk Mielenz, Jörn Dengjel, Bent Brachvogel, Kay Hofmann, Jan Riemer
Software Mentions: 2
Published: about 6 years ago

10.1016/j.sjbs.2021.02.073

Partial purification and characterization of 2, 4-diacetylphloroglucinol producing Pseudomonas fluorescens VSMKU3054 against bacterial wilt disease of tomato
Cited by: 11
Author(s): Perumal Suresh, Govintharaj Varathraju, Vellasamy Shanmugaiah, Khalid S. Almaary, Yahya B. Elbadawi, Ayman Mubarak
Software Mentions: 2
Published: over 5 years ago

10.21203/rs.3.rs-40159/v1

Structure of human steroid 5&amp;#x03B1;-reductase 2 with anti-androgen drug finasteride
Cited by: 4
Author(s): Qiuping Xiao, Lei Wang, Shreyas Supekar, Tao Shen, Heng Liu, Fei Ye, Junzhou Huang, Hao Fan, Zhiyi Wei, Cheng Zhang
Software Mentions: 2
Published: over 6 years ago

10.15252/embj.2019103234

Structural basis for centromere maintenance by <i>Drosophila</i> <scp>CENP</scp> ‐A chaperone <scp>CAL</scp> 1
Cited by: 27
Author(s): Bethan Medina‐Pritchard, Vasiliki Lazou, Juan Zou, Olwyn Byron, Maria Alba Abad, Juri Rappsilber, Patrick Heun, A. Arockia Jeyaprakash
Software Mentions: 2
Published: over 6 years ago

10.1002/mgg3.1235

A novel compound heterozygous missense mutation in <i>ASNS</i> broadens the spectrum of asparagine synthetase deficiency
Cited by: 5
Author(s): Chun Wang, Guiyuan He, Yakun Ge, Runjie Li, Zhenguo Li, Yongzhong Lin
Software Mentions: 2
Published: over 6 years ago

10.1126/sciadv.abc6479

Structural basis for heme-dependent NCoR binding to the transcriptional repressor REV-ERBβ
Cited by: 12
Author(s): Sarah A. Mosure, Timothy S. Strutzenberg, Jinsai Shang, Paola Munoz-Tello, Laura A. Solt, Patrick R. Griffin, D.J. Kojetin
Software Mentions: 2
Published: over 5 years ago

10.15252/embj.2019102209

Alterations of redox and iron metabolism accompany the development of <scp>HIV</scp> latency
Cited by: 29
Author(s): Iart Luca Shytaj, Bojana Lucic, Mattia Forcato, Carlotta Penzo, James M. Billingsley, Vibor Laketa, Steven E. Bosinger, Mia Stanić, Francesco Gregoretti, Laura Antonelli, Gennaro Oliva, Christian K. Frese, Aleksandra Trifunović, Bruno Galy, Clarissa Eibl, Guido Silvestri, Silvio Bicciato, Andrea Savarino, Marina Lušić
Software Mentions: 2
Published: over 6 years ago

10.6026/97320630017337

Differential binding of SARS-CoV-2 Spike protein variants to its cognate receptor hACE2 using molecular modeling based binding analysis
Cited by: 2
Author(s): Anuja Krishnan
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-16853-w

Kaempferide Prevents Titanium Particle Induced Osteolysis by Suppressing JNK Activation during Osteoclast Formation
Cited by: 31
Author(s): Zhipeng Jiao, Weifeng Xu, Jun Zheng, Pei Shen, An Qin, Sam Zhang, Yang Chen
Software Mentions: 2
Published: almost 9 years ago

10.15252/embr.202052325

NeutrobodyPlex—monitoring SARS‐CoV‐2 neutralizing immune responses using nanobodies
Cited by: 35
Author(s): Teresa R. Wagner, E. Ostertag, Philipp Kaiser, Marius Gramlich, Natalia Ruétalo, Daniel Junker, Julia Haering, Bjoern Traenkle, Matthias Becker, Alex Dulovic, H Schweizer, Stefan Nueske, Armin M. Scholz, Anne Zeck, Katja Schenke‐Layland, Annika Nelde, Monika Strengert, Juliane S. Walz, Georg Zocher, Thilo Stehle, Michael Schindler, Nicole Schneiderhan‐Marra, Ulrich Rothbauer
Software Mentions: 2
Published: over 5 years ago

10.6026/97320630013366

In Silico Validation of D7 Salivary Protein-derived B- and T-cell Epitopes of Aedes aegypti as Potential Vaccine to Prevent Transmission of Flaviviruses and Togaviruses to Humans
Cited by: 5
Author(s): Sathish Sankar, Mageshbabu Ramamurthy, Balaji Nandagopal, Gopalan Sridharan
Software Mentions: 2
Published: almost 9 years ago

10.1016/j.bbamcr.2020.118675

The diversity of ACBD proteins – From lipid binding to protein modulators and organelle tethers
Cited by: 26
Author(s): Markus Islinger, Joseph L. Costello, Suzan Kors, Eric Soupène, Timothy P. Levine, Frans A. Kuypers, Michael Schrader
Software Mentions: 2
Published: over 6 years ago

10.1002/ece3.52

Regulatory versus coding signatures of natural selection in a candidate gene involved in the adaptive divergence of whitefish species pairs ( Coregonus spp.)
Cited by: 15
Author(s): Julie Jeukens, Louis Bernatchez
Software Mentions: 2
Published: almost 15 years ago

10.15252/embr.201847182

Multiple C2 domains and transmembrane region proteins ( <scp>MCTP</scp> s) tether membranes at plasmodesmata
Cited by: 78
Author(s): Marie Brault, J.P. Petit, Françoise Immel, William J Nicolas, Marie Glavier, Lysiane Brocard, Amèlia Gaston, Mathieu Fouché, Timothy J. Hawkins, Jean-Marc Crowet, Magali Grison, V. Germain, Marion Rocher, Max Kraner, Vikram Alva, Stéphane Claverol, Andrea Paterlini, Yrjö Helariutta, Magali Deleu, Laurence Lins, Jens Tilsner, Emmanuelle Bayer
Software Mentions: 2
Published: over 7 years ago

10.1038/srep16950

Structure of human carbamoyl phosphate synthetase: deciphering the on/off switch of human ureagenesis
Cited by: 57
Author(s): Sergio de Cima, Luis Mariano Polo, Carmen Dı́ez-Fernández, Ana Isabel Martínez, Javier Cervera, Ignacio Fita, Vicente Rubio
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0172217

Rational design of DKK3 structure-based small peptides as antagonists of Wnt signaling pathway and in silico evaluation of their efficiency
Cited by: 16
Author(s): Mansour Poorebrahim, Sedigheh Sadeghi, Hamzeh Rahimi, Morteza Karimipoor, Kayhan Azadmanesh, Mohammad Ali Mazlomi, Ladan Teimoori‐Toolabi
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-70236-2

Effect of kaempferol on the transgenic Drosophila model of Parkinson’s disease
Cited by: 14
Author(s): . Rahul, Falaq Naz, Smita Jyoti, Yasir Hasan Siddique
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0146457

The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex
Cited by: 14
Author(s): N. Silva-Martin, María I. Daudén, Sebastian Glatt, N.A. Hoffmann, Panagiotis L. Kastritis, Peer Bork, Martin Beck, Christoph W. Müller
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-020-73203-z

Computational analysis of eugenol inhibitory activity in lipoxygenase and cyclooxygenase pathways
Cited by: 28
Author(s): Francisco das Chagas Pereira de Andrade, Anderson Nogueira Mendes
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0066247

CD38 Structure-Based Inhibitor Design Using the N1-Cyclic Inosine 5′-Diphosphate Ribose Template
Cited by: 24
Author(s): Christelle Moreau, Qun Liu, Richard Graeff, Gerd K. Wagner, Mark Thomas, Joanna M. Swarbrick, Satoshi Shuto, Hon Cheung Lee, Quan Hao, Barry V. L. Potter
Software Mentions: 2
Published: over 13 years ago

10.6026/97320630017212

Molecular docking of potential inhibitors with the mTOR protein
Cited by: 3
Author(s): Jh Shazia Fathima, Selvaraj Jayaraman, Venkatacalam Sivabalan, Umapathy Vidhya Rekha, Ponnulakshmi Rajagopal, V. Vishnupriya, Malathi Kullappan, Radhika Nalinakumari Sreekandan, Surapaneni Krishna Mohan, Periyasamy Vijayalakshmi
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-22382-x

High-affinity ligands of the colchicine domain in tubulin based on a structure-guided design
Cited by: 35
Author(s): Oskía Bueno, Juan Estévez-Gallego, Solange Martins, A.E. Prota, Federico Gago, Asier Gómez-SanJuan, María‐José Camarasa, Isabel Barasoaín, Michel O. Steinmetz, J. Fernando Díaz, María‐Jesús Pérez‐Pérez, Sandra Liekens, Eva-Marı́a Priego
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-85219-0

Solution structure of multi-domain protein ER-60 studied by aggregation-free SAXS and coarse-grained-MD simulation
Cited by: 8
Author(s): Aya Okuda, Masahiro Shimizu, Ken Morishima, Rintaro Inoue, Nobuhiro Sato, Reiko Urade, Masaaki Sugiyama
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-88826-z

Phosphorylation of the WH2 domain in yeast Las17/WASP regulates G-actin binding and protein function during endocytosis
Cited by: 1
Author(s): Joe Tyler, Iwona I. Smaczynska-de Rooij, Liemya Abugharsa, Jack Palmer, L. P. Hancock, Ellen G. Allwood, Kathryn R. Ayscough
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83196-y

Mechanism of karyopherin-β2 binding and nuclear import of ALS variants FUS(P525L) and FUS(R495X)
Cited by: 27
Author(s): Abner Gonzalez, Taro Mannen, Tolga Çağatay, Ayano Fujiwara, Hideki Matsumura, Ashley Niesman, Chad A. Brautigam, Yuh Min Chook, Takumi Yoshizawa
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/3219840

Screening for a Potential Therapeutic Agent from the Herbal Formula in the 4th Edition of the Chinese National Guidelines for the Initial-Stage Management of COVID-19 via Molecular Docking
Cited by: 13
Author(s): Yue Sun, Angela Wei Hong Yang, Andrew Hung, George Binh Lenon
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-95236-8

Structural insight into host plasma membrane association and assembly of HIV-1 matrix protein
Cited by: 6
Author(s): Halilibrahim Çi̇ftçi̇, Hiroshi Tateishi, Kotaro Koiwai, Ryoko Koga, Kensaku Anraku, Kazuaki Monde, Çağdaş Dağ, Ebru Destan, Büşra Yüksel, Esra Ayan, Günseli Yildirim, Merve Yigin, Fatma Betül Ertem, Alaleh Shafiei, Ömür Güven, Sabri O. Besler, Raymond G. Sierra, Chun Hong Yoon, Zhen Su, Mengling Liang, Burçin Acar, Türkan Haliloǧlu, Masami Otsuka, Fumiaki Yumoto, Mikako Fujita, Toshiya Senda, Hasan DeMi̇rci̇
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-90845-9

Inhibition of MMP2-PEX by a novel ester of dihydroxy cinnamic and linoleic acid from the seagrass Cymodocea serrulata
Cited by: 1
Author(s): V S Christina, R. Lakshmi Sundaram, V Sivamurugan, Dinesh Kumar, Chinambedu Dhandapani Mohanapriya, V.L. Shailaja, S P Thyagarajan, C. George Priya Doss, K. Mary Elizabeth Gnanambal
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82660-z

Crystal structures of non-oxidative decarboxylases reveal a new mechanism of action with a catalytic dyad and structural twists
Cited by: 5
Author(s): Matthias Zeug, Nebojša Marković, Cristina V. Iancu, Joanna Tripp, Mislav Oreb, Juhui Choe
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules26082125

Glycan-Induced Protein Dynamics in Human Norovirus P Dimers Depend on Virus Strain and Deamidation Status
Cited by: 10
Author(s): Jasmin Dülfer, Hao Yan, Maxim N. Brodmerkel, Robert Creutznacher, Álvaro Mallagaray, Thomas Peters, Carl Caleman, Erik Marklund, Charlotte Uetrecht
Software Mentions: 2
Published: over 5 years ago

10.15252/embj.2019103812

Dysfunctional oxidative phosphorylation shunts branched‐chain amino acid catabolism onto lipogenesis in skeletal muscle
Cited by: 28
Author(s): Cristina Sánchez-González, Cristina Nuevo‐Tapioles, Juana Robledo Martín, Marta P. Pereira, Sandra Serrano Sanz, Ana Ramı́rez de Molina, José M. Cuezva, Laura Formentini
Software Mentions: 2
Published: over 6 years ago

10.1063/1.5053466

Conformation-specific detection of calmodulin binding using the unnatural amino acid p-azido-phenylalanine (AzF) as an IR-sensor
Cited by: 10
Author(s): Anne Creon, Inokentijs Josts, Stephan Niebling, Nils Huse, Henning Tidow
Software Mentions: 2
Published: almost 8 years ago

10.1128/JVI.01541-17

The Three-Fold Axis of the HIV-1 Capsid Lattice Is the Species-Specific Binding Interface for TRIM5α
Cited by: 20
Author(s): Damien Morger, Franziska Zosel, Martin Bühlmann, Sara Züger, Maximilian Mittelviefhaus, Benjamin Schuler, Jeremy Luban, Markus G. Grütter
Software Mentions: 2
Published: over 8 years ago

10.1128/JVI.00848-21

Structures of Substrate Complexes of Foamy Viral Protease-Reverse Transcriptase
Cited by: 2
Author(s): Martyna Nowacka, Elżbieta Nowak, Mariusz Czarnocki-Cieciura, Justyna Jackiewicz, Krzysztof Skowronek, Roman H. Szczepanowski, Birgitta M. Wöhrl, Marcin Nowotny
Software Mentions: 2
Published: about 5 years ago

10.1128/JVI.01601-16

Structure of Aichi Virus 1 and Its Empty Particle: Clues to Kobuvirus Genome Release Mechanism
Cited by: 12
Author(s): C. Sabin, T. Füzik, Karel Škubník, Lenka Pálková, Anders Lindberg, Pavel Plevka
Software Mentions: 2
Published: almost 10 years ago

10.1128/JVI.00940-20

Broad and Differential Animal Angiotensin-Converting Enzyme 2 Receptor Usage by SARS-CoV-2
Cited by: 125
Author(s): Xuesen Zhao, Danying Chen, Robert Szabla, Mou‐Xiong Zheng, Guoli Li, Pengcheng Du, Shuangli Zheng, Xinglin Li, Chuan Song, Rui Li, Ju‐Tao Guo, M.S. Junop, Hui Zeng, Hanxin Lin
Software Mentions: 2
Published: about 6 years ago

10.1128/JVI.00694-16

Crystal Structure of the Human Astrovirus Capsid Protein
Cited by: 32
Author(s): Yukimatsu Toh, Justin Harper, Kelly A. Dryden, Mark Yeager, Carlos F. Arias, Ernesto Méndez, Yizhi Jane Tao
Software Mentions: 2
Published: about 10 years ago

10.3390/molecules19067008

Combination of 2D/3D Ligand-Based Similarity Search in Rapid Virtual Screening from Multimillion Compound Repositories. Selection and Biological Evaluation of Potential PDE4 and PDE5 Inhibitors
Cited by: 18
Author(s): Krisztina Dobi, István Hajdú, Beáta Flachner, Gabriella Fabó, Mária Szaszkó, Melinda Bognár, Csaba Magyar, István Simon, Dániel Szisz, Zsolt Lőrincz, Sándor Cseh, György Dormán
Software Mentions: 2
Published: over 12 years ago

10.1107/S0909049513020773

Structural fluctuation observed in Z-DNA d(CGCGCG)₂in the absence of divalent metal cations and polyamines
Cited by: 5
Author(s): Toshiyuki Chatake
Software Mentions: 2
Published: about 13 years ago

10.1016/j.yjsbx.2020.100030

Crystallographic and cryogenic electron microscopic structures and enzymatic characterization of sulfur oxygenase reductase from Sulfurisphaera tokodaii
Cited by: 3
Author(s): Yuta Sato, Takashi Yabuki, Naruhiko Adachi, Toshio Moriya, T. Arakawa, Masato Kawasaki, Chihaya Yamada, Toshiya Senda, Shinya Fushinobu, Takayoshi Wakagi
Software Mentions: 2
Published: almost 7 years ago

10.1107/S1600577515002131

Identifying and quantifying radiation damage at the atomic level
Cited by: 48
Author(s): Markus Gerstel, Charlotte M. Deane, Elspeth F. Garman
Software Mentions: 2
Published: over 11 years ago

10.1016/j.jsb.2014.03.019

A structural analysis of the AAA+ domains in Saccharomyces cerevisiae cytoplasmic dynein
Cited by: 20
Author(s): Emma S Gleave, Helgo Schmidt, Andrew P. Carter
Software Mentions: 2
Published: over 12 years ago

10.3390/ijms21103579

Resveratrol Delivery from Implanted Cyclodextrin Polymers Provides Sustained Antioxidant Effect on Implanted Neural Probes
Cited by: 15
Author(s): Rebecca M Haley, Sean T. Zuckerman, Hassan Dakhlallah, Jeffery R Capadona, Horst A. von Recum, Evon S. Ereifej
Software Mentions: 2
Published: over 6 years ago

10.6026/97320630015011

Molecular docking analysis of nuclear factor-κB and genistein interaction in the context of breast cancer
Cited by: 20
Author(s): Vidya Mukund, Santosh Kumar Behera, Afroz Alam, Ganji Purnachandra Nagaraju
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms21082713

Dynamics, a Powerful Component of Current and Future in Silico Approaches for Protein Design and Engineering
Cited by: 12
Author(s): Bartłomiej Surpeta, Carlos Sequeiros-Borja, Jan Brezovský
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21113765

New Tetrahydroacridine Hybrids with Dichlorobenzoic Acid Moiety Demonstrating Multifunctional Potential for the Treatment of Alzheimer’s Disease
Cited by: 4
Author(s): Kamila Czarnecka, Małgorzata Girek, Przemysław Wójtowicz, Paweł Kręcisz, Robert Skibiński, Jakub Jończyk, Kamil Łątka, Marek Bajda, Anna Walczak, Grzegorz Galita, Jacek Kabziński, Ireneusz Majsterek, Piotr Szymczyk, Paweł Szymański
Software Mentions: 2
Published: over 6 years ago

10.1016/j.jsb.2016.01.016

Easy mammalian expression and crystallography of maltose-binding protein-fused human proteins
Cited by: 31
Author(s): Marcel Bokhove, Hamed Sadat Al Hosseini, Takako Saitô, Elisa Dioguardi, Katharina Gegenschatz‐Schmid, Kaoru Nishimura, Isha Raj, Daniele de Sanctis, Ling Han, Luca Jovine
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0175815

Biochemical and structural investigations on phosphoribosylpyrophosphate synthetase from Mycobacterium smegmatis
Cited by: 18
Author(s): Stefano Donini, Silvia Garavaglia, Davide M. Ferraris, Riccardo Miggiano, Shiro Mori, Keigo Shibayama, Menico Rizzi
Software Mentions: 2
Published: over 9 years ago

10.1098/rsob.190258

Myriapod haemocyanin: the first three-dimensional reconstruction of <i>Scolopendra subspinipes</i> and preliminary structural analysis of <i>S. viridicornis</i>
Cited by: 1
Author(s): Katie Cristina Takeuti Riciluca, Antônio Carlos Borges, J. F. R. Mello, Úrsula Castro de Oliveira, D. C. Serdan, A. Florez-Ariza, Elisa Chaparro, Milton Yutaka Nishiyama, Alexandre Cassago, Inácio L.M. Junqueira-de-Azevedo, Marin van Heel, P. I. Silva, Rodrigo Villares Portugal
Software Mentions: 2
Published: over 6 years ago

10.1515/biol-2019-0070

RHOA and mDia1 promotes apoptosis of breast cancer cells via a high dose of doxorubicin treatment
Cited by: 12
Author(s): Peter Bober, Michal Alexovič, Zuzana Tomková, R Kilík, Ján Sabó
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.yjsbx.2020.100028

A complex between the Zika virion and the Fab of a broadly cross-reactive neutralizing monoclonal antibody revealed by cryo-EM and single particle analysis at 4.1 Å resolution
Cited by: 3
Author(s): Anu Tyagi, Tofayel Ahmed, Jing Shi, Shashi Bhushan
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.yjsbx.2020.100024

Cryo-electron microscopic and X-ray crystallographic analysis of the light-driven proton pump proteorhodopsin reveals a pentameric assembly
Cited by: 4
Author(s): Stephan Hirschi, David Kalbermatter, Zöhre Ucurum, Dimitrios Fotiadis
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.yjsbx.2020.100027

Molecular assemblies built with the artificial protein Pizza
Cited by: 8
Author(s): Jeroen P. M. Vrancken, Jana Aupič, Christine Addy, Roman Jerala, J.R.H. Tame, Arnout Voet
Software Mentions: 2
Published: almost 7 years ago

10.1107/S0909049513020803

High-resolution crystal structure of<i>Streptococcus pyogenes</i>β-NAD⁺glycohydrolase in complex with its endogenous inhibitor IFS reveals a highly water-rich interface
Cited by: 4
Author(s): Ji Young Yoon, Doo Ri An, Hye Jin Yoon, Hyoun Sook Kim, Sang Jae Lee, Ha Na Im, Jun Young Jang, Se Won Suh
Software Mentions: 2
Published: about 13 years ago

10.1128/JVI.00086-20

A Molecular Determinant of West Nile Virus Secretion and Morphology as a Target for Viral Attenuation
Cited by: 8
Author(s): Justine Basset, Julien Burlaud‐Gaillard, Maxence Feher, Philippe Roingeard, F.A. Rey, Nathalie Pardigon
Software Mentions: 2
Published: over 6 years ago

10.1128/JVI.01560-20

Orsay Virus CP-δ Adopts a Novel β-Bracelet Structural Fold and Incorporates into Virions as a Head Fiber
Cited by: 0
Author(s): Yusong R. Guo, Yingying Fan, Ying Zhou, Miao Jin, Jim L. Zhang, Hongbing Jiang, Matthew V. Holt, Tao Wang, Nicolas L. Young, David Wang, Weiwei Zhong, Yizhi Jane Tao
Software Mentions: 2
Published: about 6 years ago

10.1016/j.bbapap.2017.08.005

Thermal sensitivity and flexibility of the Cε3 domains in immunoglobulin E
Cited by: 9
Author(s): K.A. Dore, Anna M. Davies, N. Drinkwater, Andrew J. Beavil, James M. McDonnell, Brian J. Sutton
Software Mentions: 2
Published: almost 9 years ago

10.1128/JVI.01253-17

NS3 from Hepatitis C Virus Strain JFH-1 Is an Unusually Robust Helicase That Is Primed To Bind and Unwind Viral RNA
Cited by: 11
Author(s): Ting Zhou, Xiao‐Ming Ren, Rebecca L. Adams, Anna Marie Pyle
Software Mentions: 2
Published: almost 9 years ago

10.1016/j.bpj.2015.06.061

Structure, Dynamics, and Allosteric Potential of Ionotropic Glutamate Receptor N-Terminal Domains
Cited by: 26
Author(s): James Krieger, İvet Bahar, Ingo H. Greger
Software Mentions: 2
Published: about 11 years ago

10.1128/JVI.01051-20

Molecular Characterization of Influenza C Viruses from Outbreaks in Hong Kong SAR, China
Cited by: 12
Author(s): Rodney S. Daniels, Herman Tse, Burcu Ermetal, Zheng Xiang, Deborah J. Jackson, Jeremy Guntoro, Jérôme Nicod, Aengus Stewart, KJ Cross, Saira Hussain, John W. McCauley, Janice Lo
Software Mentions: 2
Published: about 6 years ago

10.1186/1479-5876-10-35

Hyperglycemic conditions inhibit C3-mediated immunologic control of Staphylococcus aureus
Cited by: 37
Author(s): Pamela S. Hair, Charlene G. Echague, Reuben D. Rohn, Neel K. Krishna, Julius O. Nyalwidhe, Kenji M. Cunnion
Software Mentions: 2
Published: over 14 years ago

10.1155/2019/1046504

Peptides from Cauliflower By-Products, Obtained by an Efficient, Ecosustainable, and Semi-Industrial Method, Exert Protective Effects on Endothelial Function
Cited by: 17
Author(s): Cristiana Caliceti, Anna Laura Capriotti, Donato Calabria, Francesca Bonvicini, Riccardo Zenezini Chiozzi, Carmela Maria Montone, Susy Piovesana, Martina Zangheri, Mara Mirasoli, Patrizia Simoni, Aldo Laganà, Aldo Roda
Software Mentions: 2
Published: over 7 years ago

10.1155/2019/8605743

GC/MS Analysis of Fatty Acids on <i>Pliek U</i> Oil and Its Pharmacological Study by Molecular Docking to Filaggrin as a Drug Candidate in Atopic Dermatitis Treatment
Cited by: 33
Author(s): Nanda Earlia, Muslem, Rivansyah Suhendra, Mohamad Amin, Crs Prakoeswa, Khairan, Rinaldi Idroes
Software Mentions: 2
Published: almost 7 years ago

10.1126/scisignal.abe1202

High-resolution structures of the SARS-CoV-2 2′- <i>O</i> -methyltransferase reveal strategies for structure-based inhibitor design
Cited by: 132
Author(s): Mónica Rosas‐Lemus, G. Minasov, L. Shuvalova, Nicole L. Inniss, O. Kiryukhina, J.S. Brunzelle, K.J.F. Satchell
Software Mentions: 2
Published: about 6 years ago

10.1155/2020/2396569

Systematically Exploring the Antitumor Mechanisms of Core Chinese Herbs on Hepatocellular Carcinoma: A Computational Study
Cited by: 4
Author(s): Zhulin Wu, Li He, Lianan Wang, Lisheng Peng
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0032070

Recognition of Anesthetic Barbiturates by a Protein Binding Site: A High Resolution Structural Analysis
Cited by: 13
Author(s): Simon Oakley, L.S. Vedula, Weiming Bu, Qing Cheng Meng, Xi Jin, Renyu Liu, Roderic G. Eckenhoff, Patrick J. Loll
Software Mentions: 2
Published: over 14 years ago

10.1016/j.ejmech.2018.04.035

Aminobenzothiazole derivatives stabilize the thermolabile p53 cancer mutant Y220C and show anticancer activity in p53-Y220C cell lines
Cited by: 52
Author(s): Matthias G. J. Baud, Matthias R. Bauer, Lorena Verduci, Felix A. Dingler, Ketan Patel, Debmalya Roy, A.C. Joerger, Alan R. Fersht
Software Mentions: 2
Published: over 8 years ago

10.3390/molecules25194413

Computational Study of C-X-C Chemokine Receptor (CXCR)3 Binding with Its Natural Agonists Chemokine (C-X-C Motif) Ligand (CXCL)9, 10 and 11 and with Synthetic Antagonists: Insights of Receptor Activation towards Drug Design for Vitiligo
Cited by: 6
Author(s): Giovanny Aguilera-Durán, Antonio Romo-Mancillas
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0079480

Cube - An Online Tool for Comparison and Contrasting of Protein Sequences
Cited by: 1
Author(s): Zong Hong Zhang, Aik Aun Khoo, Ivana Mihalek
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-021-83737-5

Prioritizing antiviral drugs against SARS-CoV-2 by integrating viral complete genome sequences and drug chemical structures
Cited by: 27
Author(s): Lihong Peng, Lei Shen, Junlin Xu, Xiongfei Tian, Fuxing Liu, Juanjuan Wang, Geng Tian, Jialiang Yang, Liqian Zhou
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20246279

Structural Insights into the Intracellular Region of the Human Magnesium Transport Mediator CNNM4
Cited by: 13
Author(s): Paula Giménez-Mascarell, Iker Oyenarte, Irene González‐Recio, Carmen Fernández‐Rodríguez, María Ángeles Corral-Rodríguez, Igone Campos-Zarraga, Jorge Simón, Elie Kostantin, Serge Hardy, Antonio Díaz-Quintana, Mara Zubillaga Lizeaga, Nekane Merino, Tammo Diercks, Francisco J. Blanco, Irene Dίaz–Moreno, María Luz Martínez‐Chantar, Michel L. Tremblay, Dominik Müller, Dritan Siliqi, Luis Alfonso Martínez-Cruz
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0030305

Virtual Screening, Identification and In Vitro Testing of Novel Inhibitors of O-Acetyl-L-Serine Sulfhydrylase of Entamoeba histolytica
Cited by: 62
Author(s): Isha Nagpal, Isha Raj, Naidu Subbarao, S. Gourinath
Software Mentions: 2
Published: over 14 years ago

10.1289/ehp.1306902

Mimicking of Estradiol Binding by Flame Retardants and Their Metabolites: A Crystallographic Analysis
Cited by: 79
Author(s): R.A. Gosavi, Gabriel A. Knudsen, Linda S. Birnbaum, Lars C. Pedersen
Software Mentions: 2
Published: about 13 years ago

10.3390/molecules16053597

Molecular Docking of Aromatase Inhibitors
Cited by: 79
Author(s): Naravut Suvannang, Chanin Nantasenamat, Chartchalerm Isarankura‐Na‐Ayudhya, Virapong Prachayasittikul
Software Mentions: 2
Published: over 15 years ago

10.1016/j.bbalip.2020.158776

Palmitoleic acid reduces high fat diet-induced liver inflammation by promoting PPAR-γ-independent M2a polarization of myeloid cells
Cited by: 22
Author(s): Camila Oliveira de Souza, Andreza Corrêa Teixeira, Luana Amorim Biondo, Loreana Sanches Silveira, Cristiane Naffah de Souza Breda, Tárcio Teodoro Braga, Niels Olsen Saraiva Câmara, Thiago Belchior, William T. Festuccia, Tiego Aparecido Diniz, Gláucio Monteiro Ferreira, Mário Hiroyuki Hirata, Adriano B. Chaves‐Filho, Marcos Yukio Yoshinaga, Sayuri Miyamoto, Philip C. Calder, J. Sethi, José Cesar Rosa Neto
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-70010-4

The AAA + ATPase valosin-containing protein (VCP)/p97/Cdc48 interaction network in Leishmania
Cited by: 3
Author(s): Bruno Aguiar, Carole Dumas, Halim Maaroufi, Prasad K. Padmanabhan, Barbara Papadopoulou
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21010083

The Structure of Sucrose-Soaked Levansucrase Crystals from Erwinia tasmaniensis reveals a Binding Pocket for Levanbiose
Cited by: 14
Author(s): Ivan Polsinelli, Rosanna Caliandro, Nicola Demitri, Stefano Benini
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0100263

Insight into PreImplantation Factor (PIF*) Mechanism for Embryo Protection and Development: Target Oxidative Stress and Protein Misfolding (PDI and HSP) through Essential RIPK Binding Site
Cited by: 30
Author(s): Eytan R. Barnea, David M. Lubman, Yan Hui Liu, V. Absalon-Medina, Soren Hayrabedyan, Krassimira Todorova, R.O. Gilbert, Joy Guingab, Timothy J. Barder
Software Mentions: 2
Published: over 12 years ago

10.3390/ijms20225796

Carotenoid Cleavage Dioxygenases: Identification, Expression, and Evolutionary Analysis of This Gene Family in Tobacco
Cited by: 24
Author(s): Qianqian Zhou, Qingchang Li, Peng Li, Songtao Zhang, Che Liu, Jingjing Jin, Peijian Cao, Yongxia Yang
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0221446

An in silico approach towards identification of novel drug targets in pathogenic species of Leptospira
Cited by: 13
Author(s): Reena Gupta, Rashi Verma, Dibyabhaba Pradhan, Arun K. Jain, Amineni Umamaheswari, C. S.
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-20557-0

ATP-dependent conformational change in ABC-ATPase RecF serves as a switch in DNA repair
Cited by: 15
Author(s): Qun Tang, Yan-Ping Liu, Hai-Huan Shan, Lu Tian, Jie-Zhong Zhang, Xiaozhi Yan
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-19530-8

APLP1 is endoproteolytically cleaved by γ-secretase without previous ectodomain shedding
Cited by: 22
Author(s): Linda Schauenburg, Filip Liebsch, Murat Eravci, Magnus C. Mayer, Christoph Weise, Gerhard Multhaup
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0179155

Molecular and functional characterization of two isoforms of chalcone synthase and their expression analysis in relation to flavonoid constituents in Grewia asiatica L
Cited by: 24
Author(s): Tareq A. Wani, Shahzad A. Pandith, Ajai Prakash Gupta, Suresh Chandra, Namrata Sharma, Surrinder K. Lattoo
Software Mentions: 2
Published: over 9 years ago

10.15252/embr.201745680

Active site alanine mutations convert deubiquitinases into high‐affinity ubiquitin‐binding proteins
Cited by: 40
Author(s): Marie E. Morrow, Michael T. Morgan, Marcello Clerici, Kateřina Growková, Ming Yan, David Komander, Titia K. Sixma, Michal Šimíček, Cynthia Wolberger
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0092249

Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Cited by: 20
Author(s): Keisuke Sugimoto, Masuo Senda, Daisuke Kasai, Masao Fukuda, Eiji Masai, Toshiya Senda
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-017-10357-3

Integrative Approach with Electrophysiological and Theoretical Methods Reveals a New Role of S4 Positively Charged Residues in PKD2L1 Channel Voltage-Sensing
Cited by: 7
Author(s): Tomohiro Numata, Kunichika Tsumoto, Kazunori Yamada, Tetsuji Kurokawa, Shinichi Hirose, Hideki Nomura, Mitsuhiro Kawano, Yoshihisa Kurachi, Ryuji Inoue, Yasuo Mori
Software Mentions: 2
Published: about 9 years ago

10.1038/srep14929

Specific binding of eukaryotic ORC to DNA replication origins depends on highly conserved basic residues
Cited by: 25
Author(s): Hironori Kawakami, Eiji Ohashi, Shota Kanamoto, Toshiki Tsurimoto, Tsutomu Katayama
Software Mentions: 2
Published: about 11 years ago

10.15252/emmm.201911248

A high‐affinity, bivalent <scp>PDZ</scp> domain inhibitor complexes <scp>PICK</scp> 1 to alleviate neuropathic pain
Cited by: 16
Author(s): Nikolaj Riis Christensen, Marta De Luca, Michael Brett Lever, Mette Richner, Astrid B Hansen, Gith Noes-Holt, Kathrine L. Jensen, Mette Rathje, Dennis Bo Jensen, Simon Erlendsson, Christian R. O. Bartling, Ina Ammendrup-Johnsen, Sofie Pedersen, Michèle Schönauer, Klaus B. Nissen, Søren Roi Midtgaard, Kaare Teilum, Andreas T. Sørensen, Anders Bach, Kristian Strømgaard, Claire Francesca Meehan, Christian Bjerggaard Vægter, Ulrik Gether, Kenneth L. Madsen
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0254929

Norcycloartocarpin targets Akt and suppresses Akt-dependent survival and epithelial-mesenchymal transition in lung cancer cells
Cited by: 4
Author(s): Nongyao Nonpanya, Kittipong Sanookpan, Keerati Joyjamras, Duangdao Wichadakul, Boonchoo Sritularak, Chatchai Chaotham, Pithi Chanvorachote
Software Mentions: 2
Published: about 5 years ago

10.15252/embj.2019101603

Structures of neurexophilin–neurexin complexes reveal a regulatory mechanism of alternative splicing
Cited by: 15
Author(s): Steven C Wilson, K. Ian White, Qiuhong Zhou, Richard A. Pfuetzner, Ucheor B. Choi, Thomas C. Südhof, Axel T. Brunger
Software Mentions: 2
Published: about 7 years ago

10.1042/BSR20180231

Cysteine modifiers suggest an allosteric inhibitory site on the CAL PDZ domain
Cited by: 8
Author(s): Yu Zhao, Patrick R. Cushing, David C. Smithson, Maria Pellegrini, Alexandre A. Pletnev, Sahar Al-Ayyoubi, Andrew V. Grassetti, Scott A. Gerber, R. Kiplin Guy, Dean R. Madden
Software Mentions: 2
Published: over 8 years ago

10.15252/embj.201899543

<scp>FAM</scp> 35A associates with <scp>REV</scp> 7 and modulates <scp>DNA</scp> damage responses of normal and <scp>BRCA</scp> 1‐defective cells
Cited by: 67
Author(s): Junya Tomida, Kei-ichi Takata, Sarita Bhetawal, Maria D. Person, Hsueh-Ping Chao, Dean G. Tang, Richard D. Wood
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0204026

Etersalate prevents the formations of 6Aβ16-22 oligomer: An in silico study
Cited by: 11
Author(s): Son Tung Ngo, Xuan-Cuong Luu, Nguyen Thanh Nguyen, Van V. Vu, Huong Thi Thu Phung
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0032336

Myelin 2′,3′-Cyclic Nucleotide 3′-Phosphodiesterase: Active-Site Ligand Binding and Molecular Conformation
Cited by: 31
Author(s): Matti Myllykoski, Arne Raasakka, Huijong Han, Petri Kursula
Software Mentions: 2
Published: over 14 years ago