10.1371/journal.pone.0170260

Targeted Deletion of a Plasmodium Site-2 Protease Impairs Life Cycle Progression in the Mammalian Host
Cited by: 5
Author(s): Konstantinos Koussis, Evi Goulielmaki, Anna Chalari, Chrislaine Withers‐Martinez, Inga Sidén‐Kiamos, Kai Matuschewski, Thanasis G. Loukeris
Software Mentions: 2
Published: almost 9 years ago

10.3390/biom10010090

Structural and Biophysical Analyses of Human N-Myc Downstream-Regulated Gene 3 (NDRG3) Protein
Cited by: 6
Author(s): Kyung Rok Kim, Kyung A. Kim, Joon Sung Park, Jun Young Jang, Yuri Choi, Hyung Ho Lee, Dong Chul Lee, Kyung Chan Park, Young Il Yeom, Hyun-Jung Kim, Byung Woo Han
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0206143

Primary structures of different isoforms of buffalo pregnancy-associated glycoproteins (BuPAGs) during early pregnancy and elucidation of the 3-dimensional structure of the most abundant isoform BuPAG 7
Cited by: 7
Author(s): Masoud Lotfan, Suman Choudhary, Munna Lal Yadav, Sudarshan Kumar, Surender Singh, Shveta Bathla, Preeti Rawat, Jai K. Kaushik, Ashok Kumar Mohanty
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0119760

In Silico Screening for Novel Inhibitors of DNA Polymerase III Alpha Subunit of Mycobacterium tuberculosis (MtbDnaE2, H37Rv)
Cited by: 14
Author(s): Alka Jadaun, Raja Sudhakar D, Naidu Subbarao, Aparna Dixit
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0187628

Plant-type phytoene desaturase: Functional evaluation of structural implications
Cited by: 25
Author(s): Julian Koschmieder, M. Fehling-Kaschek, Patrick Schaub, Sandro Ghisla, Anton Brausemann, Jens Timmer, Peter Beyer
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0239702

SAXS studies of X-ray induced disulfide bond damage: Engineering high-resolution insight from a low-resolution technique
Cited by: 7
Author(s): Timothy R. Stachowski, M. Elizabeth Snell, Edward H. Snell
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0029406

Structural Analysis and Stochastic Modelling Suggest a Mechanism for Calmodulin Trapping by CaMKII
Cited by: 21
Author(s): Melanie I. Stefan, David P. Marshall, Nicolas Le Novère
Software Mentions: 2
Published: almost 14 years ago

10.3390/pharmaceutics13081182

Polyphenols Epigallocatechin Gallate and Resveratrol, and Polyphenol-Functionalized Nanoparticles Prevent Enterovirus Infection through Clustering and Stabilization of the Viruses
Cited by: 12
Author(s): Dhanik Reshamwala, Sailee Shroff, Olivier Sheik Amamuddy, Valentino Laquintana, Nunzio Denora, Antonella Zacheo, Vili Lampinen, Vesa P. Hytönen, Özlem Tastan Bishop, Silke Krol, Varpu Marjomäki
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0106936

Atomic Resolution Structure of a Protein Prepared by Non-Enzymatic His-Tag Removal. Crystallographic and NMR Study of GmSPI-2 Inhibitor
Cited by: 8
Author(s): Edyta Kopera, Wojciech Bal, Martina Lenarčič Živković, A. S. Dvornyk, Barbara Kłudkiewicz, Krystyna Grzelak, Igor Zhukov, Włodzimierz Zagórski-Ostoja, Mariusz Jaskólski, Szymon Krzywda
Software Mentions: 2
Published: about 11 years ago

10.3390/biom9060221

The Role of a Key Amino Acid Position in Species-Specific Proteinaceous dUTPase Inhibition
Cited by: 3
Author(s): András Benedek, Fanni Temesváry-Kis, Tamjidmaa Khatanbaatar, Ibolya Leveles, Éva Viola Surányi, J. Szabó, Lívius Wunderlich, Beáta G. Vértessy
Software Mentions: 2
Published: over 6 years ago

10.3390/biom10040660

Structure of the ALS Mutation Target Annexin A11 Reveals a Stabilising N-Terminal Segment
Cited by: 8
Author(s): Peder August Gudmundsen Lillebostad, Arne Raasakka, Silje Hjellbrekke, Sudarshan Patil, Trude Røstbø, Hanne Hollås, Siri Aastedatter Sakya, Peter D. Szigetvari, Anni Vedeler, Petri Kursula
Software Mentions: 2
Published: over 5 years ago

10.1111/tpj.14409

Functional specialization of <scp>UDP</scp>‐glycosyltransferase 73P12 in licorice to produce a sweet triterpenoid saponin, glycyrrhizin
Cited by: 55
Author(s): Yuhta Nomura, Hikaru Seki, Tomonori Suzuki, Kiyoshi Ohyama, Masaharu Mizutani, Takashi Kaku, K Tamura, Eiichiro Ono, Manabu Horikawa, Hiroshi Sudo, Hiroaki Hayashi, Kazuki Saito, Toshiya Muranaka
Software Mentions: 2
Published: over 6 years ago

10.1007/s11120-017-0450-3

Crystal structure of Psb27 from Arabidopsis thaliana determined at a resolution of 1.85 Å
Cited by: 7
Author(s): Xingxing Cheng, Jiuyang Liu, Huan Zhang, Fudong Li, Zhang Shuya, Min Xu, Ke Ruan, Yuhua Wang, Aigen Fu
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0020950

Conformational Changes of rBTI from Buckwheat upon Binding to Trypsin: Implications for the Role of the P8′ Residue in the Potato Inhibitor I Family
Cited by: 13
Author(s): Long Wang, Fei Zhao, Mei Li, Hongmei Zhang, Yu Gao, Peng Cao, Xiaowei Pan, Zhuanhua Wang, Wenrui Chang
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0043985

Stapled BH3 Peptides against MCL-1: Mechanism and Design Using Atomistic Simulations
Cited by: 37
Author(s): Thomas L. Joseph, David P. Lane, Chandra Verma
Software Mentions: 2
Published: about 13 years ago

10.3390/biom10040615

Insight into the RssB-Mediated Recognition and Delivery of σs to the AAA+ Protease, ClpXP
Cited by: 10
Author(s): Dimce Micevski, Kornelius Zeth, Terrence D. Mulhern, Verena J. Schuenemann, Jessica E. Zammit, Kaye N. Truscott, David A. Dougan
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0005479

Vaccinia Virus G8R Protein: A Structural Ortholog of Proliferating Cell Nuclear Antigen (PCNA)
Cited by: 13
Author(s): Melissa Da Silva, Chris Upton
Software Mentions: 2
Published: over 16 years ago

10.1038/s42003-020-01160-4

Human adiponectin receptor AdipoR1 assumes closed and open structures
Cited by: 13
Author(s): Hiroaki Tanabe, Yuki Fujii, Miki Okada-Iwabu, Masato Iwabu, Kuniyuki Kano, Hiroki Kawana, Masakatsu Hato, Yoshihiro Nakamura, Takaho Terada, Tomomi Kimura-Someya, Mikako Shirouzu, Yoshiaki Kawano, Masaki Yamamoto, Junken Aoki, Toshimasa Yamauchi, Takashi Kadowaki, Shigeyuki Yokoyama
Software Mentions: 2
Published: over 5 years ago

10.3390/md17080479

Characterization of an Alkaline GH49 Dextranase from Marine Bacterium Arthrobacter oxydans KQ11 and Its Application in the Preparation of Isomalto-Oligosaccharide
Cited by: 14
Author(s): Hongfei Liu, Wei Ren, Mingsheng Ly, Haifeng Li, Shujun Wang
Software Mentions: 2
Published: about 6 years ago

10.3390/biom9110740

Molecular Docking Studies of a Cyclic Octapeptide-Cyclosaplin from Sandalwood
Cited by: 20
Author(s): Abheepsa Mishra, Satyahari Dey
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0154046

Rational Structure-Based Rescaffolding Approach to De Novo Design of Interleukin 10 (IL-10) Receptor-1 Mimetics
Cited by: 2
Author(s): Gloria Ruiz-Gómez, John C. Hawkins, Patrick Jenny, Georg Künze, Robert Wodtke, Reik Löser, Karim Fahmy, M. Teresa Pisabarro
Software Mentions: 2
Published: over 9 years ago

10.1016/j.matbio.2017.02.002

Structural and functional analysis of two small leucine-rich repeat proteoglycans, fibromodulin and chondroadherin
Cited by: 31
Author(s): Patricia Paracuellos, Sebastian Kalamajski, Arkadiusz Bonna, Dominique Bihan, Richard W. Farndale, Erhard Hohenester
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pbio.3000277

Structural insights into histone chaperone Chz1-mediated H2A.Z recognition and histone replacement
Cited by: 17
Author(s): Yunyun Wang, Sheng Liu, Lu Sun, Ning Xu, Shan Shan, Fei Wu, Xiaoping Liang, Yingzi Huang, Ed Luk, Carl Wu, Zheng Zhou
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0052421

Head-Head Interactions of Resting Myosin Crossbridges in Intact Frog Skeletal Muscles, Revealed by Synchrotron X-Ray Fiber Diffraction
Cited by: 14
Author(s): Kazuteru Oshima, Yoshiaki Sugimoto, Thomas C. Irving, Katsuzo Wakabayashi
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pbio.1002480

The DEAD-box Protein Rok1 Orchestrates 40S and 60S Ribosome Assembly by Promoting the Release of Rrp5 from Pre-40S Ribosomes to Allow for 60S Maturation
Cited by: 39
Author(s): Sohail Khoshnevis, Isabel Askenasy, Matthew C. Johnson, Maria D. Dattolo, Crystal L. Young-Erdos, M. Elizabeth Stroupe, Katrin Karbstein
Software Mentions: 2
Published: over 9 years ago

10.3390/md17050295

A New Tyrosinase Inhibitor from the Red Alga Symphyocladia latiuscula (Harvey) Yamada (Rhodomelaceae)
Cited by: 23
Author(s): Pradeep Paudel, Aditi Wagle, Su Hui Seong, Hye Jin Park, Hyun Ah Jung, Jae Sue Choi
Software Mentions: 2
Published: over 6 years ago

10.1038/s42003-019-0562-8

Identification of an amphipathic peptide sensor of the Bacillus subtilis fluid membrane microdomains
Cited by: 5
Author(s): Yiping Jiang, Xin Dai, Mingming Qin, Zhihong Guo
Software Mentions: 2
Published: about 6 years ago

10.1038/s42003-020-01546-4

Structural basis of Naa20 activity towards a canonical NatB substrate
Cited by: 3
Author(s): Dominik Layer, Jürgen Kopp, Miriam Fontanillo, Maja Köhn, Karine Lapouge, Irmgard Sinning
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA120.015995

Post-translational modification analysis of Saccharomyces cerevisiae histone methylation enzymes reveals phosphorylation sites of regulatory potential
Cited by: 8
Author(s): Ryan J. Separovich, Mandy W.M. Wong, Tyler Chapman, Eve Slavich, Joshua J. Hamey, Marc R. Wilkins
Software Mentions: 2
Published: almost 5 years ago

10.3390/biomedicines8050119

Discovery of Hordenine as a Potential Inhibitor of Pyruvate Dehydrogenase Kinase 3: Implication in Lung Cancer Therapy
Cited by: 66
Author(s): Saleha Anwar, Taj Mohammad, Anas Shamsi, Aarfa Queen, Shabana Parveen, Suaib Luqman, Gulam Mustafa Hasan, Khalid A. Alamry, Naved Azum, Abdullah M. Asiri, Md. Imtaiyaz Hassan
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0114903

An Integrative Computational Approach for Prioritization of Genomic Variants
Cited by: 7
Author(s): Inna Dubchak, Sandhya Balasubramanian, Sheng Wang, Cem Meyden, Dinanath Sulakhe, Alexander Poliakov, Daniela Börnigen, Bingqing Xie, Andrew Taylor, Jianzhu Ma, Alex R. Paciorkowski, Ghayda Mirzaa, Paul Dave, Gady Agam, Jinbo Xu, Lihadh Al‐Gazali, Christopher E. Mason, M. Elizabeth Ross, Natalia Maltsev, T. Conrad Gilliam
Software Mentions: 2
Published: almost 11 years ago

10.1038/s42003-018-0236-y

The crystal structure of a tetrahydrofolate-bound dihydrofolate reductase reveals the origin of slow product release
Cited by: 19
Author(s): Heidi B. Cao, Mu Gao, Hongyi Zhou, Jeffrey Skolnick
Software Mentions: 2
Published: almost 7 years ago

10.1038/s42003-020-0968-3

Tibet plateau probiotic mitigates chromate toxicity in mice by alleviating oxidative stress in gut microbiota
Cited by: 23
Author(s): Ping Feng, Ze Ye, Huawen Han, Zhenmin Ling, Tuoyu Zhou, Shuai Zhao, Amanpreet Kaur Virk, Apurva Kakade, Abd El‐Fatah Abomohra, Marwa M. El-Dalatony, El-Sayed Salama, Pu Liu
Software Mentions: 2
Published: over 5 years ago

10.1073/pnas.2014896117

The SERCA residue Glu340 mediates interdomain communication that guides Ca ²⁺ transport
Cited by: 11
Author(s): Maxwell M. G. Geurts, Johannes Clausen, Bertrand Arnou, Cédric Montigny, Guillaume Lenoir, Robin A. Corey, Christine Jaxel, Jesper Møller, Poul Nissen, Jens Peter Andersen, Marc le Maire, Maike Bublitz
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0131077

Computational Approaches for Decoding Select Odorant-Olfactory Receptor Interactions Using Mini-Virtual Screening
Cited by: 19
Author(s): Harini Krishnan, Ramanathan Sowdhamini
Software Mentions: 2
Published: over 10 years ago

10.1038/s42003-021-02068-3

Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin
Cited by: 5
Author(s): Miho Watanabe-Takahashi, Masakazu Tamada, Masuo Senda, M. Hibino, Eihan Shimizu, Akiko Okuta, Atsuo Miyazawa, Toshiya Senda, Kiyotaka Nishikawa
Software Mentions: 2
Published: over 4 years ago

10.1038/srep41212

Two strategies to engineer flexible loops for improved enzyme thermostability
Cited by: 111
Author(s): Haoran Yu, Yihan Yan, Cheng Zhang, Paul A. Dalby
Software Mentions: 2
Published: almost 9 years ago

10.1038/s42003-020-0882-8

Molecular bases for HOIPINs-mediated inhibition of LUBAC and innate immune responses
Cited by: 33
Author(s): Daisuke Oikawa, Yusuke Sato, Fumiaki Ohtake, Keidai Komakura, Kazuki Hanada, Koji Sugawara, Seigo Terawaki, Yukari Mizukami, Hoang T. Phuong, Kiyosei Iio, Shingo Obika, Masaya Fukushi, Takashi Irie, Daisuke Tsuruta, Shinobu Sakamoto, Keiji Tanaka, Yasushi Saeki, Shuya Fukai, Fuminori Tokunaga
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0036526

Structural Analyses of the Slm1-PH Domain Demonstrate Ligand Binding in the Non-Canonical Site
Cited by: 21
Author(s): K. Anand, Kenji Maeda, Anne‐Claude Gavin
Software Mentions: 2
Published: over 13 years ago

10.3390/biom11050642

The ‘Shape-Shifter’ Peptide from the Disulphide Isomerase PmScsC Shows Context-Dependent Conformational Preferences
Cited by: 1
Author(s): Lorna J. Smith, Chloe W. Green, Christina Redfield
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-021-02473-8

The structure of an archaeal oligosaccharyltransferase provides insight into the strict exclusion of proline from the N-glycosylation sequon
Cited by: 4
Author(s): Yuya Taguchi, Tomohiro Yamasaki, Marie Ishikawa, Yuki Kawasaki, Ryuji Yukimura, Maki Mitani, Kunio Hirata, Daisuke Kohda
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-021-01650-z

Comparative multi-omics analyses reveal differential expression of key genes relevant for parasitism between non-encapsulated and encapsulated Trichinella
Cited by: 3
Author(s): Xiaolei Liu, Yue Feng, Xue Bai, Xuelin Wang, Rui Qin, Bin Tang, Xinxin Yu, Yong Yang, Mingyuan Liu, Fei Gao
Software Mentions: 2
Published: almost 5 years ago

10.1038/s42003-020-01147-1

Molecular basis of the lipid-induced MucA-MucB dissociation in Pseudomonas aeruginosa
Cited by: 6
Author(s): Tao Li, Libang He, Changcheng Li, Mei Kang, Yingjie Song, Yuanfeng Zhu, Yanjiao Shen, Ninglin Zhao, Chang Zhao, Jing Yang, Qin Huang, Xingyu Mou, Aiping Tong, Jinliang Yang, Zhenling Wang, Chengjie Ji, Hong Li, Hong Tang, Rui Bao
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-019-0675-0

Structural analysis identifies an escape route from the adverse lipogenic effects of liver X receptor ligands
Cited by: 14
Author(s): Anna Y. Belorusova, Emma Evertsson, Daniel Hovdal, Jenny Sandmark, Emma Bratt, Ingela Maxvall, Ira G. Schulman, Peter Åkerblad, Eva-Lotte Lindstedt
Software Mentions: 2
Published: almost 6 years ago

10.3390/molecules23071688

Theoretical Model of EphA2-Ephrin A1 Inhibition
Cited by: 4
Author(s): Wiktoria Jedwabny, Alessio Lodola, Edyta Dyguda-Kazimierowicz
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.632095

Integrated Proteomic and Transcriptomic Analyses Reveal the Roles of Brucella Homolog of BAX Inhibitor 1 in Cell Division and Membrane Homeostasis of Brucella suis S2
Cited by: 2
Author(s): Guangdong Zhang, Fangli Zhong, Lei Chen, Peipei Qin, Junmei Li, Feijie Zhi, Lulu Tian, Dong Zhou, Peng Lin, Huatao Chen, Kai-Fu Tang, Wei Liu, Yaping Jin, Aihua Wang
Software Mentions: 2
Published: almost 5 years ago

10.1038/s42003-019-0427-1

Structure of Mycobacterium tuberculosis phosphatidylinositol phosphate synthase reveals mechanism of substrate binding and metal catalysis
Cited by: 20
Author(s): K. Grave, M.D. Bennett, Martin Högbom
Software Mentions: 2
Published: over 6 years ago

10.1038/s42003-020-01283-8

Structural role of essential light chains in the apicomplexan glideosome
Cited by: 8
Author(s): Samuel Pažický, Karthikeyan Dhamotharan, Karol Kaszuba, Haydyn D. T. Mertens, Tim‐Wolf Gilberger, Dmitri I. Svergun, Jan Kosiński, Ulrich Weininger, Christian Löw
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0040066

The Crystal Structures of Dystrophin and Utrophin Spectrin Repeats: Implications for Domain Boundaries
Cited by: 27
Author(s): M. Muthu, Kylie A. Richardson, Andrew J. Sutherland-Smith
Software Mentions: 2
Published: over 13 years ago

10.1038/s42003-020-01640-7

Molecular basis of IRGB10 oligomerization and membrane association for pathogen membrane disruption
Cited by: 8
Author(s): Hyekyung Ha, Hye Lin Chun, So Yeon Lee, Jin Ho Jeong, Yeon-Gil Kim, Hyun Ho Park
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12934-019-1190-1

Structural and functional characterization of a novel cold-active S-formylglutathione hydrolase (SfSFGH) homolog from Shewanella frigidimarina, a psychrophilic bacterium
Cited by: 11
Author(s): Chang Woo Lee, Woo-Kyoung Yoo, Sunha Park, Ly Le, Chang-Sung Jeong, Bum Han Ryu, Seung Chul Shin, Han-Woo Kim, Hyun Park, Kyeong Kyu Kim, T. Doohun Kim, Jun Hyuck Lee
Software Mentions: 2
Published: about 6 years ago

10.1038/s42003-018-0123-6

In situ serial crystallography for rapid de novo membrane protein structure determination
Cited by: 26
Author(s): Chia-Ying Huang, V. Oliéric, Nicole Howe, Rangana Warshamanage, T. Weinert, Ezequiel Panepucci, Lutz Vogeley, Shibom Basu, Kay Diederichs, Martin Caffrey, Meitian Wang
Software Mentions: 2
Published: about 7 years ago

10.3389/fpls.2019.01657

A LysR-Type Transcriptional Regulator LcrX Is Involved in Virulence, Biofilm Formation, Swimming Motility, Siderophore Secretion, and Growth in Sugar Sources in Xanthomonas axonopodis Pv. glycines
Cited by: 14
Author(s): Hanbi Park, Eunsoo Do, Minyoung Kim, Hye-Jee Park, Jong-Chan Lee, Sang-Wook Han
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0223464

Molecular dynamic simulations to investigate the structural impact of known drug resistance mutations on HIV-1C Integrase-Dolutegravir binding
Cited by: 15
Author(s): Rumbidzai Chitongo, Adetayo Emmanuel Obasa, Sello Given Mikasi, Graeme Brendon Jacobs, Ruben Cloete
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-021-02387-5

Structures of the ApoL1 and ApoL2 N-terminal domains reveal a non-classical four-helix bundle motif
Cited by: 5
Author(s): Mark Ultsch, Michael J. Holliday, Stefan Gerhardy, Paul Moran, Suzie J. Scales, Nidhi Gupta, Francesca Oltrabella, Cecilia Chiu, Wayne J. Fairbrother, Charles Eigenbrot, Daniel Kirchhofer
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-021-01739-5

Structure–function studies of ultrahigh molecular weight isoprenes provide key insights into their biosynthesis
Cited by: 2
Author(s): Hiroyuki Kajiura, Takumi Yoshizawa, Yuji Tokumoto, Nobuaki Suzuki, Shinya Takeno, Kanokwan Jumtee Takeno, Takuya Yamashita, Shun‐ichi Tanaka, Yoshinobu Kaneko, Kazuhito Fujiyama, Hideki Matsumura, Yasuhiro Nakazawa
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0067536

Towards Ligand Docking Including Explicit Interface Water Molecules
Cited by: 58
Author(s): Gordon Lemmon, Jens Meiler
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0174284

Structural insights into the regulation of Bacillus subtilis SigW activity by anti-sigma RsiW
Cited by: 19
Author(s): Shankar Raj Devkota, Eunju Kwon, Soonhoi Ha, Hyeun Wook Chang, Dong Young Kim
Software Mentions: 2
Published: over 8 years ago

10.5936/csbj.201402003

NMR CHARACTERIZATION OF SELF-ASSOCIATION DOMAINS PROMOTED BY INTERACTIONS WITH LC8 HUB PROTEIN
Cited by: 13
Author(s): Elisar Barbar, Afua Nyarko
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pbio.0020274

Recognition and Accommodation at the Androgen Receptor Coactivator Binding Interface
Cited by: 199
Author(s): Eugene Hur, S.J. Pfaff, E.S. Payne, Hanne Grøn, Benjamin M. Buehrer, Robert J. Fletterick
Software Mentions: 2
Published: about 21 years ago

10.1016/j.csbj.2021.08.012

Computationally grafting an IgE epitope onto a scaffold: Implications for a pan anti-allergy vaccine design
Cited by: 1
Author(s): Sari Sabban
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA120.014924

Evolving the naturally compromised chorismate mutase from Mycobacterium tuberculosis to top performance
Cited by: 8
Author(s): Jūrate ̇ Fahrig-Kamarauskait≑, Kathrin Würth-Roderer, Helen V. Thorbjørnsrud, Susanne Mailand, Ute Krengel, Peter Kast
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pbio.2005160

DENR–MCTS1 heterodimerization and tRNA recruitment are required for translation reinitiation
Cited by: 30
Author(s): Yasar Luqman Ahmed, Sibylle Schleich, Jonathan Bohlen, Nicolas Mandel, Bernd Simon, Irmgard Sinning, Aurelio A. Teleman
Software Mentions: 2
Published: over 7 years ago

10.1016/j.csbj.2020.09.017

The autoinhibited state of MKK4: Phosphorylation, putative dimerization and R134W mutant studied by molecular dynamics simulations
Cited by: 8
Author(s): Ekaterina Shevchenko, Antti Poso, Tatu Pantsar
Software Mentions: 2
Published: almost 6 years ago

10.3390/genes9030140

Pyrethroid Resistance in the Major Malaria Vector Anopheles funestus is Exacerbated by Overexpression and Overactivity of the P450 CYP6AA1 Across Africa
Cited by: 25
Author(s): Sulaiman S. Ibrahim, Nathalie Amvongo-Adjia, Murielle J. Wondji, Helen Irving, Jacob M. Riveron, Charles S. Wondji
Software Mentions: 2
Published: over 7 years ago

10.1016/j.jbc.2021.100679

A versatile cis-prenyltransferase from Methanosarcina mazei catalyzes both C- and O-prenylations
Cited by: 2
Author(s): Miyako Okada, Hajime Unno, Koh-ichi Emi, Mayuko Matsumoto, Hisashi Hemmi
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.jbc.2021.100957

The endopeptidase of the maize-affecting Marafivirus type member maize rayado fino virus doubles as a deubiquitinase
Cited by: 5
Author(s): Ankoor Patel, Jessica A.M. McBride, Brian L. Mark
Software Mentions: 2
Published: over 4 years ago

10.1016/j.jbc.2021.100506

Structural basis for the DNA-binding activity of human ARID4B Tudor domain
Cited by: 7
Author(s): Jie Ren, Hongwei Yao, Wanhui Hu, Sarah Perrett, Weibin Gong, Yingang Feng
Software Mentions: 2
Published: almost 5 years ago

10.1093/database/bau041

PTM-SD: a database of structurally resolved and annotated posttranslational modifications in proteins
Cited by: 45
Author(s): Pierrick Craveur, Joseph Rebehmed, Alexandre G. de Brevern
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.ppat.1008871

Evidence that immunization with TP0751, a bipartite Treponema pallidum lipoprotein with an intrinsically disordered region and lipocalin fold, fails to protect in the rabbit model of experimental syphilis
Cited by: 15
Author(s): Amit Luthra, Jairo M. Montezuma-Rusca, Carson J. La Vake, Morgan LeDoyt, Kristina N. Delgado, Timothy C. Davenport, Mary Fiel-Gan, Melissa J. Caimano, Justin D. Radolf, Kelly L. Hawley
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0227287

Two novel mutations in MSX1 causing oligodontia
Cited by: 5
Author(s): Yang Le, Jia Liang, Haitang Yue, Zhuan Bian
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1009329

Structural and functional studies of the first tripartite protein complex at the Trypanosoma brucei flagellar pocket collar
Cited by: 6
Author(s): Charlotte Isch, Paul Majneri, Nicolas Landrein, Yulia Pivovarova, Johannes Lesigang, Florian Lauruol, Derrick R. Robinson, Gang Dong, Mélanie Bonhivers
Software Mentions: 2
Published: over 4 years ago

10.3390/biom10081166

Discovery of Sulfated Small Molecule Inhibitors of Matrix Metalloproteinase-8
Cited by: 8
Author(s): Shravan Morla, Umesh R. Desai
Software Mentions: 2
Published: over 5 years ago

10.1073/pnas.1911880116

Intrinsic elasticity of nucleosomes is encoded by histone variants and calibrated by their binding partners
Cited by: 37
Author(s): Daniël P. Melters, Mary Pitman, Tatini Rakshit, Emilios K. Dimitriadis, Minh Bui, Garegin A. Papoian, Yamini Dalal
Software Mentions: 2
Published: about 6 years ago

10.1093/protein/gzx044

Novel CH1:CL interfaces that enhance correct light chain pairing in heterodimeric bispecific antibodies
Cited by: 26
Author(s): Maximilian Bönisch, Carolin Sellmann, Daniel Maresch, Claudia Halbig, Stefan Becker, Lars Toleikis, Björn Hock, Florian Rüker
Software Mentions: 2
Published: about 8 years ago

10.1007/s13238-015-0205-x

Crystal structures of Bbp from Staphylococcus aureus reveal the ligand binding mechanism with Fibrinogen α
Cited by: 16
Author(s): Xinyue Zhang, Meng Wu, Wei Zhuo, Junping Gu, Sensen Zhang, Jingpeng Ge, Maojun Yang
Software Mentions: 2
Published: about 10 years ago

10.1002/pro.3779

ConSurf‐DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins
Cited by: 74
Author(s): Adi Ben Chorin, Gal Masrati, Amit Kessel, Aya Narunsky, Josef Sprinzak, Shlomtzion Lahav, Haim Ashkenazy, Nir Ben‐Tal
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0085940

Crystal Structures of HIV-1 gp120 Envelope Glycoprotein in Complex with NBD Analogues That Target the CD4-Binding Site
Cited by: 47
Author(s): Young Do Kwon, Judith M. LaLonde, Yongping Yang, Mark A. Elban, Akihiro Sugawara, Joel R. Courter, David M. Jones, Amos B. Smith, Asim K. Debnath, Peter D. Kwong
Software Mentions: 2
Published: almost 12 years ago

10.1038/srep40254

Crystal Structure of StnA for the Biosynthesis of Antitumor Drug Streptonigrin Reveals a Unique Substrate Binding Mode
Cited by: 5
Author(s): Tianle Qian, Jing Wo, Yan Zhang, Quanwei Song, Guoqiang Feng, Ray Luo, Shuangjin Lin, Geng Wu, Haifeng Chen
Software Mentions: 2
Published: almost 9 years ago

10.1002/pro.3628

Function and solution structure of the <scp> <i>Arabidopsis thaliana</i> </scp> RALF8 peptide
Cited by: 10
Author(s): Ronnie O. Frederick, Miyoshi Haruta, Marco Tonelli, Woonghee Lee, Gabriel Cornilescu, Claudia C. Cornilescu, Michael R. Sussman, John L. Markley
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-02803-z

Construction of novel repeat proteins with rigid and predictable structures using a shared helix method
Cited by: 22
Author(s): Suk-Jun Youn, Nayoung Kwon, Ji Hyun Lee, Jin Hong Kim, Jin‐Woo Choi, Hayyoung Lee, Jie‐Oh Lee
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-05234-y

Structural and Biochemical Characterization of Apicomplexan Inorganic Pyrophosphatases
Cited by: 2
Author(s): Abhishek Jamwal, Manickam Yogavel, M. Z. Abdin, Swatantra Kumar Jain, Amit Sharma
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-03220-y

Bacterial protease uses distinct thermodynamic signatures for substrate recognition
Cited by: 13
Author(s): G.A. Bezerra, Yuko Ohara‐Nemoto, Irina Cornaciu, Sofiya Fedosyuk, Guillaume Hoffmann, Adam Round, José Antonio Márquez, Takayuki Nemoto, Kristina Djinović-Carugo
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-06278-w

Mechanisms and Specificity of Phenazine Biosynthesis Protein PhzF
Cited by: 11
Author(s): Christina Diederich, Mario Leypold, Martin Culka, Hansjörg Weber, Rolf Breinbauer, G. Matthias Ullmann, Wulf Blankenfeldt
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-019-48612-4

Non-Contact Universal Sample Presentation for Room Temperature Macromolecular Crystallography Using Acoustic Levitation
Cited by: 16
Author(s): Robert H. Morris, E. Dye, Danny Axford, Michael I. Newton, John Beale, Peter Docker
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-019-46230-8

Structural characterization of life-extending Caenorhabditis elegans Lipid Binding Protein 8
Cited by: 8
Author(s): Matthew Tillman, Manoj Khadka, Jonathon Duffy, Meng C. Wang, Eric A. Ortlund
Software Mentions: 2
Published: over 6 years ago

10.3389/fmed.2021.694668

Saudi Familial Hypercholesterolemia Patients With Rare LDLR Stop Gain Variant Showed Variable Clinical Phenotype and Resistance to Multiple Drug Regimen
Cited by: 6
Author(s): Zuhier Awan, Omran M. Rashidi, Bandar Ali Al-Shehri, Kaiser Jamil, Ramu Elango, Jumana Y. Al‐Aama, Robert A. Hegele, Noor Ahmad Shaik
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-017-05594-5

Escape from humoral immunity is associated with treatment failure in HIV-1-infected patients receiving long-term antiretroviral therapy
Cited by: 6
Author(s): Yabo Ouyang, Qianqian Yin, Wei Li, Zhenpeng Li, Desheng Kong, Yanling Wu, Kui Hong, Hui Xing, Yiming Shao, Shibo Jiang, Tianlei Ying, Liying Ma
Software Mentions: 2
Published: over 8 years ago

10.1038/srep45505

Global evolutionary history and spatio-temporal dynamics of dengue virus type 2
Cited by: 29
Author(s): Kaifa Wei, Yuhan Li
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-019-53868-x

Novel miR-29b target regulation patterns are revealed in two different cell lines
Cited by: 9
Author(s): Wenting Zhao, Lesley Cheng, Camelia Quek, Shayne A. Bellingham, Andrew F. Hill
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.01466

Insight Into the Interaction Between RNA Polymerase and VPg for Murine Norovirus Replication
Cited by: 10
Author(s): Jihye Lee, Beom Seok Park, Kang Rok Han, Scott B. Biering, Soo J Kim, Jayoung Choi, Jong Hyeon Seok, Intekhab Alam, Mi Sook Chung, Ho M. Kim, Seungmin Hwang, Kyung H. Kim
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0008006

Structure of an Odorant-Binding Protein from the Mosquito Aedes aegypti Suggests a Binding Pocket Covered by a pH-Sensitive “Lid”
Cited by: 103
Author(s): Ney Ribeiro Leite, Renata Krogh, Wei Xü, Yuko Ishida, J. Iulek, Walter S. Leal, Glaucius Oliva
Software Mentions: 2
Published: almost 16 years ago

10.1038/s41598-020-62460-7

The First 3D Model of the Full-Length KIT Cytoplasmic Domain Reveals a New Look for an Old Receptor
Cited by: 7
Author(s): François Inizan, Myriam Hanna, Maxim Stolyarchuk, Isaure Chauvot de Beauchêne, Luba Tchertanov
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.03329

Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence
Cited by: 6
Author(s): Hye Seon Lee, Mi Kyung Lee, Jun‐Seob Kim, Hae-Ran Lee, Hang‐Sik Shin, Moo‐Seung Lee, Kyeong Sik Jin, Cheol-Hee Kim, Bonsu Ku, Choong-Min Ryu, Seung Jun Kim
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2021.669220

Interrogating the Role of the Two Distinct Fructose-Bisphosphate Aldolases of Bacillus methanolicus by Site-Directed Mutagenesis of Key Amino Acids and Gene Repression by CRISPR Interference
Cited by: 6
Author(s): Kerstin Schultenkämper, Desirée D. Gütle, Marina Gil López, Laura B. Keller, Lin Zhang, Oliver Einsle, Jean‐Pierre Jacquot, Volker F. Wendisch
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2020.00583

The Interaction of RecA With Both CheA and CheW Is Required for Chemotaxis
Cited by: 3
Author(s): Elisabet Frutos-Grilo, María Marsal, Oihane Irazoki, Jordi Barbé, Susana Campoy
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-90287-3

Molecular insight into isoform specific inhibition of PI3K-α and PKC-η with dietary agents through an ensemble pharmacophore and docking studies
Cited by: 4
Author(s): Baki Vijaya Bhaskar, Aluru Rammohan, Tirumalasetty Munichandra Babu, Gui Yu Zheng, Weibin Chen, Wudayagiri Rajendra, Grigory V. Zyryanov, Wei Gu
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-96217-7

A multiscale approach for bridging the gap between potency, efficacy, and safety of small molecules directed at membrane proteins
Cited by: 7
Author(s): Rodrigo Aguayo‐Ortiz, Jeffery Creech, Eric N. Jiménez-Vázquez, Guadalupe Guerrero-Serna, Nulang Wang, A.M. Rocha, Todd J. Herron, L. Michel Espinoza-Fonseca
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2021.679246

Genetic Characteristics of Human Parainfluenza Virus Types 1–4 From Patients With Clinical Respiratory Tract Infection in China
Cited by: 8
Author(s): Nan Shao, Bo Liu, Yan Xiao, Xinming Wang, Lili Ren, Jie Dong, Lu Sun, Yafang Zhu, Ting Zhang, Fan Yang
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-97828-w

Evaluation of the relationship between the 14-3-3ε protein and LvRab11 in the shrimp Litopenaeus vannamei during WSSV infection
Cited by: 1
Author(s): Guson Boonyoung, Tanate Panrat, Amornrat Phongdara, Warapond Wanna
Software Mentions: 2
Published: about 4 years ago