pypi: Pathway | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0012222

Hybrid Models Identified a 12-Gene Signature for Lung Cancer Prognosis and Chemoresponse Prediction
Cited by: 45
Author(s): Ying-Wooi Wan, Ebrahim Sabbagh, Rebecca Raese, Yong Qian, Dajie Luo, James Denvir, Val Vallyathan, Vincent Castranova, Nancy Lan Guo
Software Mentions: 2
Published: over 14 years ago

10.1186/1471-2105-12-19

Context-dependent transcriptional regulations between signal transduction pathways
Cited by: 6
Author(s): Shin Hwang, Sangwoo Kim, Heon‐Cheol Shin, Doheon Lee
Software Mentions: 2
Published: almost 14 years ago

10.3389/fgene.2020.01034

Identification and Characterization of lncRNAs Related to the Muscle Growth and Development of Japanese Flounder (Paralichthys olivaceus)
Cited by: 11
Author(s): Shuangyan Wu, Jingru Zhang, Binghua Liu, Yajuan Huang, Siping Li, Haishen Wen, Meizhao Zhang, Jifang Li, Yun Li, Feng He
Software Mentions: 2
Published: about 4 years ago

10.1186/1756-0500-4-356

CastorDB: a comprehensive knowledge base for Ricinus communis
Cited by: 6
Author(s): Shalabh Thakur, Sanjay Jha, Bharat B. Chattoo
Software Mentions: 2
Published: about 13 years ago

10.3389/fcell.2019.00380

Deciphering the Association of Cytokines, Chemokines, and Growth Factors in Chondrogenic Differentiation of Human Bone Marrow Mesenchymal Stem Cells Using an ex vivo Osteochondral Culture System
Cited by: 17
Author(s): Mohammad Alam Jafri, Kalamegam Gauthaman, Mohammed Abbas, Mohammed Alkaff, Farid Ahmed, Sherin Bakhashab, Mahmood Rasool, Muhammad Imran Naseer, Vasan Sinnadurai, Peter Natesan Pushparaj
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2105-12-176

Web-based metabolic network visualization with a zooming user interface
Cited by: 31
Author(s): Mario Latendresse, Peter D. Karp
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0082435

Fyn-Dependent Gene Networks in Acute Ethanol Sensitivity
Cited by: 23
Author(s): Sean P. Farris, Michael F. Miles
Software Mentions: 2
Published: almost 11 years ago

10.12688/f1000research.3818.2

Systems analysis of the prostate tumor suppressor NKX3.1 supports roles in DNA repair and luminal cell differentiation
Cited by: 5
Author(s): Changjun Yang, Alicia S. Chung, Chia‐Yu Ku, Laurence M. Brill, Roy Williams, David E. Wolf
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12919-021-00213-8

Abstracts from the 4th Annual Student Medical Summit
Cited by: 1
Author(s):
Software Mentions: 2
Published: over 3 years ago

10.3389/fcvm.2020.616920

Iron-Deficiency Anemia Results in Transcriptional and Metabolic Remodeling in the Heart Toward a Glycolytic Phenotype
Cited by: 10
Author(s): Yong Chung, Pawel Swietach, M. Kate Curtis, Vicky Ball, Peter A. Robbins, Samira Lakhal‐Littleton
Software Mentions: 2
Published: almost 4 years ago

10.3389/fcell.2021.745637

Thrombospondin-4 Is a Soluble Dermal Inflammatory Signal That Selectively Promotes Fibroblast Migration and Keratinocyte Proliferation for Skin Regeneration and Wound Healing
Cited by: 12
Author(s): Mariliis Klaas, Kristina Mäemets-Allas, Elizabeth Heinmäe, Heli Lagus, Claudia Griselda Cárdenas-León, Terje Arak, Mart Eller, Külli Kingo, Esko Kankuri, Viljar Jaks
Software Mentions: 2
Published: about 3 years ago

10.3389/fgene.2021.716163

Transcriptome and Metabolome Analyses of the Flowers and Leaves of Chrysanthemum dichrum
Cited by: 5
Author(s): Hua Liu, Xiaoxi Chen, Hạixia Chen, Jie Lu, Dongliang Chen, Chao Luo, Xi Cheng, Jing Yin, Conglin Huang
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0127630

Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant
Cited by: 74
Author(s): Tomas Persson, Kai Battenberg, Irina V. Demina, Theoden Vigil-Stenman, Brian Vanden Heuvel, Petar Pujic, Marc T. Facciotti, Elizabeth G. Wilbanks, Anna O'Brien, Pascale Fournier, Maria Antonia Cruz Hernandez, Alberto Herrera, Claudine Médigue, Philippe Normand, Katharina Pawlowski, Alison M. Berry
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0027811

Radiation–Induced Signaling Results in Mitochondrial Impairment in Mouse Heart at 4 Weeks after Exposure to X-Rays
Cited by: 130
Author(s): Žarko Barjaktarović, Dominik Schmaltz, Alena Shyla, Omid Azimzadeh, Sabine Schulz, Julia Haagen, Wolfgang Dörr, Hakan Sarioglu, Alexander Schäfer, Michael J. Atkinson, Hans Zischka, Soile Tapio
Software Mentions: 2
Published: almost 13 years ago

10.15252/embr.201948961

EVL regulates VEGF receptor‐2 internalization and signaling in developmental angiogenesis
Cited by: 13
Author(s): Joana Zink, Maike Frye, Timo Frömel, Claudia Carlantoni, David John, Danny Schreier, Andreas Weigert, Hebatullah Laban, Gabriela Salinas, Heike Stingl, Lea Günther, Rüdiger Popp, Jiong Hu, Benoît Vanhollebeke, Hannes Schmidt, Amparo Acker‐Palmer, Thomas Renné, Ingrid Fleming, P. Benz
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0072591

Comparative Gene Expression Profiling Identifies Common Molecular Signatures of NF-κB Activation in Canine and Human Diffuse Large B Cell Lymphoma (DLBCL)
Cited by: 74
Author(s): Manikhandan Mudaliar, Ross Haggart, Gino Miele, Grant C. Sellar, Karen A. L. Tan, John Goodlad, Elspeth Milne, David M. Vail, Ilene D. Kurzman, Daniel Crowther, David Argyle
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0221446

An in silico approach towards identification of novel drug targets in pathogenic species of Leptospira
Cited by: 13
Author(s): Reena Gupta, Rashi Verma, Dibyabhaba Pradhan, Arun K. Jain, Amineni Umamaheswari, C. S.
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2021.715765

The Specific NLRP3 Antagonist IFM-514 Decreases Fibrosis and Inflammation in Experimental Murine Non-Alcoholic Steatohepatitis
Cited by: 12
Author(s): Sandra Torres, Maximilian Joseph Brol, Fernando Magdaleno, Robert Schierwagen, Frank Erhard Uschner, Sabine Klein, Cristina Ortiz, Olaf Tyc, Nadine Bachtler, James Stunden, Damien Bertheloot, Ana Kitanovic, Brian Sanchez, Jacob E. Schrum, William Roush, Luigi Franchi, Kate Byth, Eicke Latz, Jonel Trebicka
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0013017

Defining Hypo-Methylated Regions of Stem Cell-Specific Promoters in Human iPS Cells Derived from Extra-Embryonic Amnions and Lung Fibroblasts
Cited by: 51
Author(s): Koichiro Nishino, Masashi Toyoda, Mayu Yamazaki-Inoue, Hidenari Makino, Yoshihiro Fukawatase, Emi Chikazawa, Yoriko Takahashi, Yoshitaka Miyagawa, Hajime Okita, Nobutaka Kiyokawa, Hidenori Akutsu, Akihiro Umezawa
Software Mentions: 2
Published: about 14 years ago

10.1186/1471-2164-13-S7-S2

iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies
Cited by: 38
Author(s): Jittima Piriyapongsa, Chumpol Ngamphiw, Apichart Intarapanich, Supasak Kulawonganunchai, Anunchai Assawamakin, Chaiwat Bootchai, Philip Shaw, Sissades Tongsima
Software Mentions: 2
Published: almost 12 years ago

10.1289/ehp.10861

Drinking-Water Arsenic Exposure Modulates Gene Expression in Human Lymphocytes from a U.S. Population
Cited by: 128
Author(s): Angeline S. Andrew, Dianne V. Jewell, Rebecca A. Mason, Michael L. Whitfield, Jason H. Moore, Margaret R. Karagas
Software Mentions: 2
Published: over 16 years ago

10.1186/1753-6561-5-S4-S11

Gene expression pattern in swine neutrophils after lipopolysaccharide exposure: a time course comparison
Cited by: 4
Author(s): Gema Sanz, Ángeles Jiménez-Marín, Rocío Bautista, Noé Fernández, M. Gonzalo Claros, Juan J. Garrido
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0084182

Epigenetic Reprogramming in Mist1−/− Mice Predicts the Molecular Response to Cerulein-Induced Pancreatitis
Cited by: 12
Author(s): Rashid Mehmood, Gábor Varga, Sonali Q. Mohanty, Scott W. Laing, Yuefeng Lu, C. L. Johnson, Alexei Kharitonenkov, Christopher L. Pin
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0037034

Comparative Proteomic Analysis of Aedes aegypti Larval Midgut after Intoxication with Cry11Aa Toxin from Bacillus thuringiensis
Cited by: 48
Author(s): Angeles Cancino-Rodezno, Luis Lozano, Cris Oppert, Julieta Ivonne Castro, Humberto Lánz-Mendoza, Sergio Encarnación, Amy Evans, Sarjeet S. Gill, Mário Soberón, Juan Luís Jurat-Fuentes, Alejandra Bravo
Software Mentions: 2
Published: over 12 years ago

10.1242/bio.058593

Oviductal fluid counterbalances the negative effect of high temperature on sperm in an ectotherm model
Cited by: 5
Author(s): Nicola De Rossi, Guadalupe López Juri, Margarita Chiaraviglio, Gabriela Cardozo
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2164-9-478

Global analysis of gene expression changes during retinoic acid-induced growth arrest and differentiation of melanoma: comparison to differentially expressed genes in melanocytes vs melanoma
Cited by: 19
Author(s): Mary H. Estler, Goran Bošković, James Denvir, Sarah Miles, Donald A. Primerano, Richard M. Niles
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0132468

Meta-Analysis of Placental Transcriptome Data Identifies a Novel Molecular Pathway Related to Preeclampsia
Cited by: 32
Author(s): Miranda van Uitert, Perry D. Moerland, Daniel A. Enquobahrie, Hannele Laivuori, Joris A. M. van der Post, Carrie Ris‐Stalpers, Gijs B. Afink
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0076773

Transcription Factors OVOL1 and OVOL2 Induce the Mesenchymal to Epithelial Transition in Human Cancer
Cited by: 211
Author(s): Hernán Roca, James R. Hernandez, Savannah Weidner, Richard C. McEachin, David Fuller, Sudha Sud, Taibriana Schumann, John E. Wilkinson, Alexander Zaslavsky, Hangwen Li, Christopher A. Maher, Stephanie Daignault‐Newton, Patrick Healy, Kenneth J. Pienta
Software Mentions: 2
Published: about 11 years ago

10.1093/database/baw009

An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework
Cited by: 28
Author(s): Yi‐An Chen, Lokesh P. Tripathi, Kenji Mizuguchi
Software Mentions: 2
Published: almost 9 years ago

10.1093/database/bau126

Comparison of human cell signaling pathway databases—evolution, drawbacks and challenges
Cited by: 86
Author(s): Saikat Chowdhury, Ram Rup Sarkar
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2164-15-327

Transcriptome profiling of liver of non-genetic low birth weight and long term health consequences
Cited by: 4
Author(s): Alberto Miranda, Angela Patricia López‐Cardona, Ricardo Laguna‐Barraza, Alexandra Calle, Irene López‐Vidriero, Belén Pintado, Alfonso Gutiérrez‐Adán
Software Mentions: 2
Published: almost 11 years ago

10.3389/fphys.2016.00184

Community Structure Reveals Biologically Functional Modules in MEF2C Transcriptional Regulatory Network
Cited by: 17
Author(s): Sergio Antonio Alcalá-Corona, Tadeo Enrique Velazquez-Caldelas, Jesús Espinal-Enríquez, Enrique Hernández‐Lemus
Software Mentions: 2
Published: over 8 years ago

10.1093/database/baaa113

Large-scale regulatory and signaling network assembly through linked open data
Cited by: 1
Author(s): Marie Lefebvre, Alban Gaignard, Maxime Folschette, Jérémie Bourdon, Carito Guziołowski
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0246507

Biomarker-focused multi-drug combination therapy and repurposing trial in mdx mice
Cited by: 8
Author(s): Michael Ziemba, Molly Barkhouse, Kitipong Uaesoontrachoon, Mamta Giri, Yetrib Hathout, Utkarsh J. Dang, Heather Gordish‐Dressman, Kanneboyina Nagaraju, Eric P. Hoffman
Software Mentions: 2
Published: over 3 years ago

10.1186/1756-8935-8-7

STAT3 acts through pre-existing nucleosome-depleted regions bound by FOS during an epigenetic switch linking inflammation to cancer
Cited by: 33
Author(s): Joseph D. Fleming, Paul G. Giresi, Marianne Lindahl-Allen, Elizabeth A. Krall, Jason D. Lieb, Kevin Struhl
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0022401

Large Scale Comparison of Innate Responses to Viral and Bacterial Pathogens in Mouse and Macaque
Cited by: 26
Author(s): Guy Zinman, Rachel Brower–Sinning, Chineye H. Emeche, Jason Ernst, Grace Tzu Wei Huang, Shaun Mahony, Anna Myers, Dawn M. O’Dee, Jo Anne L. Flynn, Gerard J. Nau, Ted M. Ross, Russell D. Salter, Panayiotis V. Benos, Ziv Bar‐Joseph, Penelope A. Morel
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2164-13-68

Transcription analysis on response of porcine alveolar macrophages to Haemophilus parasuis
Cited by: 38
Author(s): Yang Wang, Chong Liu, Yīng Fāng, Xiaoli Liu, Wentao Li, Shuqing Liu, Yingyu Liu, Yuxi Liu, Catherine Charreyre, Jean-Christophe Audonnet, Pin Chen, Qigai He
Software Mentions: 2
Published: almost 13 years ago

10.5936/csbj.201304004

A NETWORK VIEW ON PARKINSON'S DISEASE
Cited by: 43
Author(s): S. Chandrasekaran, Danail Bonchev
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2164-15-1161

Cytokine systems approach demonstrates differences in innate and pro-inflammatory host responses between genetically distinct MERS-CoV isolates
Cited by: 31
Author(s): Christian Selinger, Jennifer Tisoncik-Go, Vineet D. Menachery, Sudhakar Agnihothram, G. Lynn Law, Jean Chang, Sara M. Kelly, Pavel Sova, Ralph S. Baric, Michael G. Katze
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0040949

Warburg Effect’s Manifestation in Aggressive Pheochromocytomas and Paragangliomas: Insights from a Mouse Cell Model Applied to Human Tumor Tissue
Cited by: 32
Author(s): Stephanie Fliedner, Nina Kaludercic, Xiao Jiang, Hana Hansı́ková, Zuzana Hájková, Jana Sládková, Andrea Limpuangthip, Peter S. Backlund, Robert Wesley, Lucia Martiniova, Ivana Jochmanová, Nikoletta Lendvai, J Breza, Alfred L. Yergey, Nazareno Paolocci, Arthur S. Tischler, Jiřı́ Zeman, Forbes D. Porter, Hendrik Lehnert, Karel Pacák
Software Mentions: 2
Published: over 12 years ago

10.1016/j.csbj.2015.11.006

Disease, Models, Variants and Altered Pathways—Journeying RGD Through the Magnifying Glass
Cited by: 3
Author(s): Victoria Petri, G. Thomas Hayman, Marek Tutaj, Jennifer Smith, Stan Laulederkind, Shur-Jen Wang, Rajni Nigam, Jeff De Pons, Mary Shimoyama, Melinda R. Dwinell
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2105-9-S4-S6

RDFScape: Semantic Web meets Systems Biology
Cited by: 27
Author(s): Andrea Splendiani
Software Mentions: 2
Published: over 16 years ago

10.1186/s12870-017-1086-3

Genome-wide transcriptome profiling provides overwintering mechanism of Agropyron mongolicum
Cited by: 4
Author(s): J. Du, Xiaoquan Li, Tingting Li, Dongyang Yu, Bing Han
Software Mentions: 2
Published: over 7 years ago

10.1007/s12094-021-02621-w

Aberrantly low STAT3 and STAT5 responses are associated with poor outcome and an inflammatory gene expression signature in pediatric acute myeloid leukemia
Cited by: 5
Author(s): Priya Narayanan, Tsz-Kwong Man, Robert B. Gerbing, Rhonda E. Ries, Alexandra M. Stevens, Y.-C. Wang, Xin Long, Alan S. Gamis, Todd M. Cooper, Soheil Meshinchi, Todd A. Alonzo, Michele S. Redell
Software Mentions: 2
Published: over 3 years ago

10.1155/2013/293010

A Two-Level Model for the Analysis of Syndrome of Acute Ischemic Stroke: From Diagnostic Model to Molecular Mechanism
Cited by: 5
Author(s): Wen Dai, Liu Xi, Zhichen Zhang, Jianxin Chen, R. S. Guo, Hong Zheng, Xin Jin, Shengfang Wen, Yibo Gao, Tiangang Li, Peng Lu, Yunling Zhang
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0038049

Claudin 1 Mediates TNFα-Induced Gene Expression and Cell Migration in Human Lung Carcinoma Cells
Cited by: 56
Author(s): Atsushi Shiozaki, Xiaohui Bai, Grace Shen–Tu, Serisha Moodley, Hitoshi Takeshita, Shan‐Yu Fung, Yingchun Wang, Shaf Keshavjee, Mingyao Liu
Software Mentions: 2
Published: over 12 years ago

10.1186/s12964-019-0504-6

miR-544 promotes maturity and antioxidation of stem cell-derived endothelial like cells by regulating the YY1/TET2 signalling axis
Cited by: 8
Author(s): Jianming Guo, Xiang Qiu, Xin Yao-jie, Yongyi Huang, Gang Zou, Te Liu
Software Mentions: 2
Published: over 4 years ago

10.1186/1747-1028-4-20

Proteomics, pathway array and signaling network-based medicine in cancer
Cited by: 56
Author(s): David Y. Zhang, Fei Ye, Ling Gao, Xiaoliang Liu, Xin Zhao, Yufang Che, Hongxia Wang, Libo Wang, Josephine W. Wu, Dong Eun Song, Wei Liu, Hong Xu, Bo Jiang, Weijia Zhang, Jinhua Wang, Peng Lee
Software Mentions: 2
Published: almost 16 years ago

10.3390/cancers5020491

Metabolomic Dynamic Analysis of Hypoxia in MDA-MB-231 and the Comparison with Inferred Metabolites from Transcriptomics Data
Cited by: 15
Author(s): I‐Lin Tsai, Tien-Chueh Kuo, Tsung Jung Ho, Yeu-Chern Harn, San-Yuan Wang, Wen‐Mei Fu, Ching‐Hua Kuo, Yufeng J. Tseng
Software Mentions: 2
Published: over 11 years ago

10.3390/cancers13143520

Proteomics of Primary Uveal Melanoma: Insights into Metastasis and Protein Biomarkers
Cited by: 6
Author(s): Geeng-Fu Jang, John S. Crabb, Bo Hu, Belinda Willard, Helen Kalirai, Arun D. Singh, Sarah E. Coupland, John W. Crabb
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.103650

hsa_circRNA6448-14 promotes carcinogenesis in esophageal squamous cell carcinoma
Cited by: 5
Author(s): Yaowen Zhang, Xiang Yuan, Ning J. Yue, Lidong Wang, Junqi Liu, Ning Dai, Haijun Yang, Ruitai Fan, Fuyou Zhou
Software Mentions: 2
Published: over 4 years ago

10.3390/cancers11081151

SLMP53-2 Restores Wild-Type-Like Function to Mutant p53 through Hsp70: Promising Activity in Hepatocellular Carcinoma
Cited by: 19
Author(s): Sara Gomes, Bartolomeo Bosco, Joana B. Loureiro, Helena Ramos, Liliana Raimundo, Joana Soares, Naïr Nazareth, Valentina Barcherini, Lucı́lia Domingues, Carla Cristina Marques de Oliveira, Alessandra Bisio, Silvano Piazza, Matthias R. Bauer, João Brás, Maria Inês Almeida, Célia Gomes, Flávio Reis, Alan R. Fersht, Alberto Inga, Maria M. M. Santos, Lucı́lia Saraiva
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers13143613

Canopy Homolog 2 as a Novel Molecular Target in Hepatocarcinogenesis
Cited by: 3
Author(s): Anna Kakehashi, Shugo Suzuki, Masayuki Shiota, Nina Raymo, Min Gi, Taro Tachibana, В. Е. Стефанов, Hideki Wanibuchi
Software Mentions: 2
Published: over 3 years ago

10.1186/s12874-019-0811-z

Hierarchies of evidence applied to lifestyle Medicine (HEALM): introduction of a strength-of-evidence approach based on a methodological systematic review
Cited by: 46
Author(s): David L. Katz, Micaela Karlsen, Mei Chung, Marissa Shams-White, L. W. Green, Jonathan E. Fielding, Amornrat Saito, Walter C. Willett
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0142693

Transcriptomic Analysis of Induced Pluripotent Stem Cells Derived from Patients with Bipolar Disorder from an Old Order Amish Pedigree
Cited by: 32
Author(s): Kwi Hye Kim, Jiangang Liu, Rachelle J. Sells Galvin, Jeffrey L. Dage, Janice A. Egeland, Rosamund C. Smith, Kalpana Merchant, Steven M. Paul
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0028254

Filaggrin Genotype Determines Functional and Molecular Alterations in Skin of Patients with Atopic Dermatitis and Ichthyosis Vulgaris
Cited by: 60
Author(s): M Winge, Torborg Hoppe, Berit Berne, Anders Vahlquist, Magnus Nordenskjöld, J. F. N. Bradley, Hans Törmä
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12864-017-3641-6

Tissue and time specific expression pattern of interferon regulated genes in the chicken
Cited by: 17
Author(s): Susanne Röll, Stefan Härtle, Thomas Lütteke, Bernd Kaspers, Sonja Härtle
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0124574

Systems Biology Analysis Merging Phenotype, Metabolomic and Genomic Data Identifies Non-SMC Condensin I Complex, Subunit G (NCAPG) and Cellular Maintenance Processes as Major Contributors to Genetic Variability in Bovine Feed Efficiency
Cited by: 28
Author(s): Philipp Widmann, Antônio Reverter, Rosemarie Weikard, Karsten Suhre, H.M. Hammon, Elke Albrecht, Christa Kühn
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0208993

SLC3A2 is a novel endoplasmic reticulum stress-related signaling protein that regulates the unfolded protein response and apoptosis
Cited by: 17
Author(s): Chunlei Liu, Xin Li, Chen Li, Zeyu Zhang, Xiaojian Gao, Zhilong Jia, Haixu Chen, Qian Jia, Xiaojing Zhao, Jixuan Liu, Bohan Liu, Zhihong Xu, Yaping Tian, Kunlun He
Software Mentions: 2
Published: almost 6 years ago

10.3390/cancers13163972

Plasma Based Protein Signatures Associated with Small Cell Lung Cancer
Cited by: 2
Author(s): Johannes F. Fahrmann, Hiroyuki Katayama, Ehsan Irajizad, Ashish Chakraborty, Toshiro Kato, Xiangying Mao, Soyoung Park, Eunice Murage, Leona Rusling, Chuan Yu, Yinging Cai, Fu Chung Hsiao, Jennifer B. Dennison, Hai T. Tran, Edwin J. Ostrin, David O. Wilson, Jian Min Yuan, Jody Vykoukal, Samir Hanash
Software Mentions: 2
Published: over 3 years ago

10.3390/cells10092380

Mitochondrial Disruption by Amyloid Beta 42 Identified by Proteomics and Pathway Mapping
Cited by: 11
Author(s): Patricia Sinclair, Ancha Baranova, Nadine Kabbani
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0235274

A qualitative exploration of cardiovascular disease patients’ views and experiences with an eHealth cardiac rehabilitation intervention: The PATHway Project
Cited by: 10
Author(s): Orlagh O’Shea, Catherine Woods, Lauri McDermott, Roselien Buys, Nils Cornelis, Jomme Claes, Véronique Cornelissen, Anne Gallagher, Helen Newton, Niall M. Moyna, Noel McCaffrey, Давиде Суста, Clare M. McDermott, Ciara McCormack, Werner Budts, Kieran Moran
Software Mentions: 2
Published: over 4 years ago

10.3389/fnins.2019.01007

A Human Embryonic Stem Cell Model of Aβ-Dependent Chronic Progressive Neurodegeneration
Cited by: 5
Author(s): Teresa Ubina, Martha Magallanes, Saumya Srivastava, Charles Warden, Jiing‐Kuan Yee, Paul M. Salvaterra
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pcbi.1004714

Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics
Cited by: 296
Author(s): David Lamparter, Daniel Marbach, Rico Rueedi, Zoltán Kutalik, Sven Bergmann
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12911-016-0338-8

The eClinical Care Pathway Framework: a novel structure for creation of online complex clinical care pathways and its application in the management of sexually transmitted infections
Cited by: 16
Author(s): Jo Gibbs, L Sutcliffe, Gkatzidou, Kate Hone, RE Ashcroft, Emma Harding-Esch, C Lowndes, S Tariq Sadiq, Pam Sonnenberg, C Estcourt
Software Mentions: 1
Published: over 8 years ago

10.1186/s12920-015-0140-y

The impact of direct-to-consumer personal genomic testing on perceived risk of breast, prostate, colorectal, and lung cancer: findings from the PGen study
Cited by: 17
Author(s): Deanna Alexis Carere, Tyler J. VanderWeele, Tanya A. Moreno, Joanna L. Mountain, J. Scott Roberts, Peter Kraft, Robert C. Green
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pcbi.1004176

Extensive Decoupling of Metabolic Genes in Cancer
Cited by: 27
Author(s): Ed Reznik, Chris Sander
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pcbi.1005432

Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells
Cited by: 10
Author(s): Aurélien Naldi, Romain M. Larive, Urszula Czerwińska, Serge Urbach, Philippe Montcourrier, Christian Roy, Jérôme Solassol, Gilles Freiss, Peter J. Coopman, Ovidiu Radulescu
Software Mentions: 1
Published: over 7 years ago

10.1186/s12920-014-0069-6

Heterogeneity analysis of the proteomes in clinically nonfunctional pituitary adenomas
Cited by: 29
Author(s): Xianquan Zhan, Xiaowei Wang, Ying Long, Dominic M. Desiderio
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12920-015-0159-0

Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection
Cited by: 38
Author(s): Hong Zhu, Qiang Wang, Yizheng Yao, Jian Fang, Fengying Sun, Ying Ni, Yifei Shen, Hua Wang, Shihe Shao
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2164-13-320

Differential microRNA response to a high-cholesterol, high-fat diet in livers of low and high LDL-C baboons
Cited by: 35
Author(s): Genesio M. Karere, Jeremy P. Glenn, John L. VandeBerg, Laura A. Cox
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pbio.2005707

Mitochondrial nicotinamide adenine dinucleotide reduced (NADH) oxidation links the tricarboxylic acid (TCA) cycle with methionine metabolism and nuclear DNA methylation
Cited by: 71
Author(s): Oswaldo A. Lozoya, Inmaculada Martínez‐Reyes, Tianyuan Wang, Dagoberto Grenet, Pierre R. Bushel, Jianying Li, Navdeep S. Chandel, Richard P. Woychik, Janine H. Santos
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3000508

Cisd2 is essential to delaying cardiac aging and to maintaining heart functions
Cited by: 34
Author(s): Chi-Hsiao Yeh, Zhao Qing Shen, Shao Yu Hsiung, Po‐Kuei Wu, Yuan Teng, Yi Ju Chou, Su Wen Fang, Chian Feng Chen, Yu Yan, Lung‐Sen Kao, Chiang Kao, Ting Fen Tsai
Software Mentions: 1
Published: about 5 years ago

10.14814/phy2.14373

The acute effects of growth hormone in adipose tissue is associated with suppression of antilipolytic signals
Cited by: 10
Author(s): Katrine Lundby Høyer, Morten Lyng Høgild, Edward O. List, Kevin Y. Lee, Emily Kissinger, Rita Sharma, Nils E. Magnusson, Vishwajeet Puri, John J. Kopchick, Jens Otto Lunde Jørgensen, Niels Jessen
Software Mentions: 1
Published: almost 5 years ago

10.3390/ph6111429

Hedgehog Pathway Blockade Inhibits Melanoma Cell Growth in Vitro and in Vivo
Cited by: 37
Author(s): Kathryn E. O'Reilly, Eleazar Vega Saenz de Miera, Miguel F. Segura, Erica B. Friedman, Laura Poliseno, Sung Won Han, Judy Zhong, Jiří Zavadil, Anna C. Pavlick, Eva Hernando, Iman Osman
Software Mentions: 1
Published: about 11 years ago

10.7717/peerj.11440

Identification of the biological function of miR-9 in spinal cord ischemia-reperfusion injury in rats
Cited by: 2
Author(s): Fengshou Chen, Jie Han, Xiaoqian Li, Zaili Zhang, Dan Wang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12920-017-0258-1

Diet and exercise changes following direct-to-consumer personal genomic testing
Cited by: 24
Author(s): Daiva E. Nielsen, Deanna Alexis Carere, Catharine Wang, J. Scott Roberts, Robert C. Green
Software Mentions: 1
Published: over 7 years ago

10.1186/s12871-016-0187-0

Perceptions about the relative importance of patient care-related topics: a single institutional survey of its anesthesiologists, nurse anesthetists, and surgeons
Cited by: 4
Author(s): Thomas R. Vetter, Joydip Barman, Arthur M. Boudreaux, Keith A. Jones
Software Mentions: 1
Published: almost 9 years ago

10.7717/peerj.6152

Ocean acidification alters morphology of all otolith types in Clark’s anemonefish (<i>Amphiprion clarkii</i>)
Cited by: 17
Author(s): Robert J. Holmberg, Eric Wilcox-Freeburg, Andrew L. Rhyne, Michael F. Tlusty, Alan Stebbins, Steven W. Nye, Aaron Honig, Amy E. Johnston, Christine M San Antonio, Bradford Bourque, Robyn Hannigan
Software Mentions: 1
Published: almost 6 years ago

10.1186/1755-8794-4-44

Modeling microRNA-mRNA Interactions Using PLS Regression in Human Colon Cancer
Cited by: 45
Author(s): Xiaohong Li, Ryan Gill, Nigel G. F. Cooper, Jae Keun Yoo, Susmita Datta
Software Mentions: 1
Published: over 13 years ago

10.1186/1755-8794-2-67

DNA microarray profiling of genes differentially regulated by the histone deacetylase inhibitors vorinostat and LBH589 in colon cancer cell lines
Cited by: 86
Author(s): Melissa J. LaBonte, Peter M. Wilson, William Fazzone, Susan Groshen, Heinz‐Josef Lenz, Robert D. Ladner
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-15-339

Identification and characterization of microRNAs in the ovaries of multiple and uniparous goats (Capra hircus) during follicular phase
Cited by: 51
Author(s): Yinghui Ling, Chunhuan Ren, Xiaofei Guo, Lei Xu, Yingsong Huang, Jian-Chuan Luo, Yunhai Zhang, Xiaorong Zhang, Zijun Zhang
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.3939

Comparative proteomics reveals that YK51, a 4-Hydroxypandurantin-A analogue, downregulates the expression of proteins associated with dengue virus infection
Cited by: 6
Author(s): Wei-Lian Tan, Yean Kee Lee, Yen Fong Ho, Rohana Yusof, Noorsaadah Abdul Rahman, Saiful Anuar Karsani
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12920-019-0482-y

Transcriptome profiling analysis reveals that CXCL2 is involved in anlotinib resistance in human lung cancer cells
Cited by: 24
Author(s): Jun Lü, Wei Xu, Jie Qian, Shuyuan Wang, Bo Zhang, Lele Zhang, Rong Qiao, Maoliang Hu, Yiming Zhao, Xiaodong Zhao, Baohui Han
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2350-15-2

Genome-wide association study of bipolar disorder in Canadian and UK populations corroborates disease loci including SYNE1 and CSMD1
Cited by: 96
Author(s): Wei Xu, Sarah Cohen‐Woods, Qian Chen, Abdul Noor, Jo Knight, Georgina M. Hosang, Sagar V. Parikh, Vincenzo De Luca, Federica Tozzi, Pierandrea Muglia, Julia Forte, Andrew McQuillin, Pingzhao Hu, Hugh Gurling, James L. Kennedy, Peter McGuffin, Anne Farmer, John S. Strauss, John B. Vincent
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2164-15-375

Large-scale phosphoproteome analysis in seedling leaves of Brachypodium distachyon L.
Cited by: 32
Author(s): Dongwen Lv, Xin Li, Ming Zhang, Aiqin Gu, Shoumin Zhen, Chang Wang, Xiaohui Li, Yueming Yan
Software Mentions: 1
Published: over 10 years ago

10.3390/pathogens10080949

Identification of Toxocara canis Antigen-Interacting Partners by Yeast Two-Hybrid Assay and a Putative Mechanism of These Host–Parasite Interactions
Cited by: 3
Author(s): Ewa Długosz, Małgorzata Milewska, Piotr Bąska
Software Mentions: 1
Published: over 3 years ago

10.1186/s13071-017-2093-9

Species-specific ecological niche modelling predicts different range contractions for Lutzomyia intermedia and a related vector of Leishmania braziliensis following climate change in South America
Cited by: 21
Author(s): Shannon McIntyre, Elizabeth Ferreira Rangel, P. D. Ready, Bruno Moreira de Carvalho
Software Mentions: 1
Published: over 7 years ago

10.1186/s13071-016-1436-2

De novo transcriptomic analysis of the female and male adults of the blood fluke Schistosoma turkestanicum
Cited by: 12
Author(s): Guohua Li, Min-Jun Xu, Qiao‐Cheng Chang, Jinliang Gao, Chun-Ren Wang, Xing‐Quan Zhu
Software Mentions: 1
Published: over 8 years ago

10.5811/westjem.2017.12.36444

3 for the Price of 1: Teaching Chest Pain Risk Stratification in a Multidisciplinary, Problem-based Learning Workshop
Cited by: 2
Author(s): William D. Alley, Cynthia Burns, Nicholas Hartman, Kim Askew, Simon A. Mahler
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2350-11-64

Custom CGH array profiling of copy number variations (CNVs) on chromosome 6p21.32 (HLA locus) in patients with venous malformations associated with multiple sclerosis
Cited by: 19
Author(s): Alessandra Ferlini, Matteo Bovolenta, Marcella Neri, Francesca Gualandi, A Balboni, Anton Yuryev, Fabrizio Salvi, Donato Gemmati, A Liboni, Paolo Zamboni
Software Mentions: 1
Published: over 14 years ago

10.3390/v12111299

Transcriptional Immune Signatures of Alveolar Macrophages and the Impact of the NLRP3 Inflammasome on Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Replication
Cited by: 2
Author(s): Julie A. Hicks, Dongwan Yoo, Hsiao‐Ching Liu
Software Mentions: 1
Published: about 4 years ago

10.1186/s12881-015-0161-6

Tissue-specific patterns of gene expression in the epithelium and stroma of normal colon in healthy individuals in an aspirin intervention trial
Cited by: 17
Author(s): Sushma S. Thomas, Karen W. Makar, Lin Li, Yingye Zheng, Peiying Yang, Lisa Levy, Rebecca Yvonne Rudolph, Paul D. Lampe, Min Yan, Sanford D. Markowitz, Jeannette Bigler, Johanna W. Lampe, John D. Potter
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-15-642

Integrating biological pathways and genomic profiles with ChiBE 2
Cited by: 26
Author(s): Özgün Babur, Uğur Doğrusöz, Merve Çakır, Bülent Arman Aksoy, Nikolaus Schultz, Chris Sander, Emek Demir
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12859-017-1727-4

A novel pathway-based distance score enhances assessment of disease heterogeneity in gene expression
Cited by: 2
Author(s): Xiting Yan, Anqi Liang, José L. Gómez, Lauren Cohn, Hongyu Zhao, Geoffrey Chupp
Software Mentions: 1
Published: over 7 years ago

10.31557/APJCP.2020.21.9.2751

Integrative Bioinformatics Analysis Reveals Potential Target Genes and TNFα Signaling Inhibition by Brazilin in Metastatic Breast Cancer Cells
Cited by: 5
Author(s): Adam Hermawan, Herwandhani Putri
Software Mentions: 1
Published: about 4 years ago

10.18632/aging.101056

Global gene profiling of aging lungs in Atp8b1 mutant mice
Cited by: 10
Author(s): Ramani Soundararajan, Timothy M. Stearns, Alexander Czachor, Jutaro Fukumoto, Christina S. Turn, Emma Westermann-Clark, Mason Breitzig, Lee Charles Tan, Richard F. Lockey, Benjamin L. King, Narasaiah Kolliputi
Software Mentions: 1
Published: about 8 years ago

10.1186/s12985-018-0982-y

Pretreatment microRNA levels can predict HBsAg clearance in CHB patients treated with pegylated interferon α-2a
Cited by: 7
Author(s): Yanlin Yang, Ming Liu, Ying Deng, Yan Guo, Xuqing Zhang, Dongfang Xiang, Li Jiang, You Zhang, Yi Wu, Maoshi Li, Qing Mao
Software Mentions: 1
Published: over 6 years ago

10.1186/s12985-015-0288-2

Differential expression of miRNAs in enterovirus 71-infected cells
Cited by: 31
Author(s): Xianhong Meng, Chaofeng Ma, Qianqian Du, Yanhong Ji, Jiru Xu
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2172-11-51

The gastrointestinal nematode Trichostrongylus colubriformis down-regulates immune gene expression in migratory cells in afferent lymph
Cited by: 22
Author(s): Jacqueline S. Knight, David Baird, Wayne R. Hein, A. Pernthaner
Software Mentions: 1
Published: about 14 years ago

Projects: pypi: Pathway

Papers Mentioning Pathway 827