10.1371/journal.ppat.1008770

Red-light is an environmental effector for mutualism between begomovirus and its vector whitefly
Cited by: 19
Author(s): Pingzhi Zhao, Xuan Zhang, Yuqing Gong, Duan Wang, Dongqing Xu, Ning Wang, Yanwei Sun, Lianbo Gao, Shu‐Sheng Liu, Xing Wang Deng, Daniel J. Kliebenstein, Xin Zhou, Rongxiang Fang, Jian Ye
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009177

T-cell responses to sequentially emerging viral escape mutants shape long-term HIV-1 population dynamics
Cited by: 4
Author(s): Tomohiro Akahoshi, Hiroyuki Gatanaga, Nozomi Kuse, Takayuki Chikata, Madoka Koyanagi, Naoki Ishizuka, Chanson J. Brumme, Hayato Murakoshi, Zabrina L. Brumme, Shinichi Oka, Masafumi Takiguchi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009194

Bacterial dormancy: A subpopulation of viable but non-culturable cells demonstrates better fitness for revival
Cited by: 31
Author(s): Sariqa Wagley, Helen Morcrette, Andrea Kovacs-Simon, Zheng Yang, Aidan Power, Richard K. Tennant, John Love, Neil Murray, Richard W. Titball, Catherine Butler
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009212

Hydroxychloroquine-mediated inhibition of SARS-CoV-2 entry is attenuated by TMPRSS2
Cited by: 157
Author(s): Tianling Ou, Huihui Mou, Lizhou Zhang, Amrita Ojha, Hyeryun Choe, Michael Farzan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009213

Naturally occurring substitution in one amino acid in VHSV phosphoprotein enhances viral virulence in flounder
Cited by: 3
Author(s): Jee Youn Hwang, Unn Hwa Lee, Min Jin Heo, Min Sun Kim, Ji Min Jeong, So Yeon Kim, Mun‐Gyeong Kwon, Bo Young Jee, Ki Hong Kim, Chan-Il Park, Jeong Woo Park
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009199

In vivo nanoscale analysis of the dynamic synergistic interaction of Bacillus thuringiensis Cry11Aa and Cyt1Aa toxins in Aedes aegypti
Cited by: 10
Author(s): Samira López-Molina, Nathaly Alexandre do Nascimento, Maria Helena Neves Lobo Silva-Filha, Adán Guerrero, Jorge Sánchez, Sabino Pacheco, Sarjeet S. Gill, Mário Soberón, Alejandra Bravo
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009164

A lysine ring in HIV capsid pores coordinates IP6 to drive mature capsid assembly
Cited by: 25
Author(s): Nadine Renner, Donna L. Mallery, K. M. Rifat Faysal, Peng Wang, D.A. Jacques, Till Böcking, Leo C. James
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009239

An Alba-domain protein required for proteome remodelling during trypanosome differentiation and host transition
Cited by: 8
Author(s): Shubha Bevkal, Arunasalam Naguleswaran, Ruth Rehmann, Marcel Kaiser, Manfred Heller, Isabel Roditi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009749

Targeting human langerin promotes HIV-1 specific humoral immune responses
Cited by: 6
Author(s): Jérôme Kervevan, Aurélie Bouteau, Juliane Sousa Lanza, Adele Hammoudi, Sandra Zurawski, Mathieu Surénaud, Lydie Dieudonné, Marion Bonnet, Cécile Lefebvre, Hakim Hocini, Romain Marlin, Aurélie Guguin, Barbara Hersant, Oana Hermeziu, Elisabeth Menu, Christine Lacabaratz, Jean‐Daniel Lelièvre, Gérard Zurawski, Véronique Godot, Sandrine Henri, Botond Z. Igyártó, Yves Lévy, Sylvain Cardinaud
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009797

A novel heteromeric pantothenate kinase complex in apicomplexan parasites
Cited by: 9
Author(s): Erick T. Tjhin, Vanessa M. Howieson, Christina Spry, Giel G. van Dooren, Kevin J. Saliba
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009848

Blocking HSV-1 glycoprotein K binding to signal peptide peptidase reduces virus infectivity in vitro and in vivo
Cited by: 2
Author(s): Shaohui Wang, Ujjaldeep Jaggi, Jack Yu, Homayon Ghiasi
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009427

Intranasal type I interferon treatment is beneficial only when administered before clinical signs onset in the SARS-CoV-2 hamster model
Cited by: 33
Author(s): Pierre Bessière, Marine Wasniewski, Evelyne Picard-Meyer, Alexandre Servat, Thomas Figueroa, Charlotte Foret‐Lucas, Amelia Coggon, Sandrine Lesellier, Frank Boué, Nathan Cebron, Blandine Gausserès, Catherine Trumel, Gilles Foucras, Francisco J. Salguero, Élodie Monchâtre-Leroy, Romain Volmer
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009806

Loss of Septation Initiation Network (SIN) kinases blocks tissue invasion and unlocks echinocandin cidal activity against Aspergillus fumigatus
Cited by: 7
Author(s): Ana Camila Oliveira Souza, Adela Martín‐Vicente, Ashley V. Nywening, Wenbo Ge, David J. Lowes, Brian M. Peters, Jarrod R. Fortwendel
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009837

Exosomal miR-224 contributes to hemolymph microbiota homeostasis during bacterial infection in crustacean
Cited by: 12
Author(s): Yi Gong, Xiaoyuan Wei, Wanwei Sun, Xin Ren, Jiao Chen, Jude Juventus Aweya, Hongyu Ma, Kok‐Gan Chan, Yueling Zhang, Shengkang Li
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009803

The degree of polymerization and sulfation patterns in heparan sulfate are critical determinants of cytomegalovirus entry into host cells
Cited by: 15
Author(s): Dipanwita Mitra, Mohammad S Hasan, John T. Bates, Michael A. Bierdeman, Dallas R. Ederer, Rinkuben Parmar, Lauren A Fassero, Quntao Liang, Hong Qiu, Vaibhav Tiwari, Fuming Zhang, Robert J. Linhardt, Joshua S. Sharp, Lianchun Wang, Ritesh Tandon
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009800

SARS-CoV-2 suppresses IFNβ production mediated by NSP1, 5, 6, 15, ORF6 and ORF7b but does not suppress the effects of added interferon
Cited by: 60
Author(s): Maya Shemesh, Turgut E. Aktepe, Joshua M. Deerain, Julie McAuley, Michelle D. Audsley, Cassandra T. David, Damian F. J. Purcell, Victoria Urin, Rune Hartmann, Gregory W. Moseley, Jason M. Mackenzie, Gideon Schreiber, Daniel Harari
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009379

The redox-responsive transcriptional regulator Rex represses fermentative metabolism and is required for Listeria monocytogenes pathogenesis
Cited by: 7
Author(s): Cortney R. Halsey, Rochelle C. Glover, Maureen K. Thomason, Michelle L. Reniere
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009541

Herpes simplex virus 2 (HSV-2) evolves faster in cell culture than HSV-1 by generating greater genetic diversity
Cited by: 4
Author(s): Alberto Domingo López-Muñoz, Alberto Rastrojo, Rocı́o Martı́n, Antonio Alcamı́
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009868

NK cells eliminate Epstein-Barr virus bound to B cells through a specific antibody-mediated uptake
Cited by: 11
Author(s): Elisenda Alari-Pahissa, Michelle Ataya, Ilias Moraitis, Miriam Campos-Ruiz, Mireia Altadill, Aura Muntasell, Anna Moles, Miguel López‐Botet
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009878

Differential plasmacytoid dendritic cell phenotype and type I Interferon response in asymptomatic and severe COVID-19 infection
Cited by: 49
Author(s): Martina Severa, Roberta Antonia Diotti, Marilena P. Etna, Fabiana Rizzo, Stefano Fiore, Daniela Ricci, Marco Iannetta, Alessandro Sinigaglia, Alessandra Lodi, Nicasio Mancini, Elena Criscuolo, Massimo Clementi, Massimo Andreoni, Stefano Balducci, Luisa Barzon, Paola Stefanelli, Nicola Clementi, Eliana M. Coccia
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009736

Antibody responses induced by SHIV infection are more focused than those induced by soluble native HIV-1 envelope trimers in non-human primates
Cited by: 15
Author(s): Jelle van Schooten, Marlies M. van Haaren, Hui Li, Laura E McCoy, Colin Havenar-Daughton, Christopher A. Cottrell, Judith A. Burger, Patricia van der Woude, Leanne C. Helgers, Ilhan Tomris, Celia C. LaBranche, David C. Montefiori, Andrew B. Ward, Dennis R. Burton, John P. Moore, Rogier W. Sanders, Shane Crotty, George M. Shaw, Marit J. van Gils
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009835

Coordinated action of multiple transporters in the acquisition of essential cationic amino acids by the intracellular parasite Toxoplasma gondii
Cited by: 5
Author(s): Stephen J. Fairweather, Esther Rajendran, Martin Blume, Kiran Javed, Birte Steinhöfel, Malcolm J. McConville, Kiaran Kirk, Stefan Bröer, Giel G. van Dooren
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009846

The Drosophila Baramicin polypeptide gene protects against fungal infection
Cited by: 27
Author(s): Mark A. Hanson, Lianne B. Cohen, Alice Marra, Igor Iatsenko, Steven A. Wasserman, Bruno Lemaître
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009840

Discovery of re-purposed drugs that slow SARS-CoV-2 replication in human cells
Cited by: 15
Author(s): Adam Pickard, Ben Calverley, Joan Chang, Richa Garva, Sara Gago, Yinhui Lu, Karl E. Kadler
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009879

Avian influenza A virus susceptibility, infection, transmission, and antibody kinetics in European starlings
Cited by: 7
Author(s): Jeremy W. Ellis, J. Jeffrey Root, Loredana M. McCurdy, Kevin T. Bentler, Nicole L. Barrett, Kaci K. VanDalen, Katherine L. Dirsmith, Susan A. Shriner
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009902

A kinase-independent function of PAK is crucial for pathogen-mediated actin remodelling
Cited by: 6
Author(s): Anthony C. Davidson, Joe Tyler, Peter Hume, Vikash Singh, Vassilis Koronakis
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009425

Disruption of the Pseudomonas aeruginosa Tat system perturbs PQS-dependent quorum sensing and biofilm maturation through lack of the Rieske cytochrome bc1 sub-unit
Cited by: 7
Author(s): Eliza Ye-Chen Soh, Frances J.D. Smith, Maxime Rémi Gimenez, Liang Yang, Rebecca Munk Vejborg, Matthew P. Fletcher, Nigel Halliday, Sophie Bleves, Stephan Heeb, Miguel Cámara, Michael Givskov, Kim R. Hardie, Tim Tolker‐Nielsen, Bérengère Ize, Paul Williams
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009321

Rab11a mediates cell-cell spread and reassortment of influenza A virus genomes via tunneling nanotubes
Cited by: 9
Author(s): Ketaki Ganti, Julianna Han, Balaji Manicassamy, Anice C. Lowen
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009888

The opportunistic intracellular bacterial pathogen Rhodococcus equi elicits type I interferon by engaging cytosolic DNA sensing in macrophages
Cited by: 7
Author(s): Krystal J. Vail, Bibiana Petri da Silveira, Samantha L. Bell, Noah D. Cohen, Angela I. Bordin, Kristin L. Patrick, Robert O. Watson
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009842

Broadly directed SARS-CoV-2-specific CD4+ T cell response includes frequently detected peptide specificities within the membrane and nucleoprotein in patients with acute and resolved COVID-19
Cited by: 36
Author(s): Janna Heide, Sophia Schulte, Matin Kohsar, Thomas Theo Brehm, Marissa Herrmann, Hendrik Karsten, Matthias Marget, Sven Peine, Alexandra M. Johansson, Alessandro Sette, Marc Lütgehetmann, William W. Kwok, John Sidney, Julian Schulze zur Wiesch
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009909

Elucidating the mechanism by which synthetic helper peptides sensitize Pseudomonas aeruginosa to multiple antibiotics
Cited by: 13
Author(s): Yushan Xia, Rubén Cebrián, Congjuan Xu, Anne de Jong, Weihui Wu, Oscar P. Kuipers
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009918

Histone demethylase LSD1 promotes RIG-I poly-ubiquitination and anti-viral gene expression
Cited by: 1
Author(s): Qi-Xin Hu, Hui-Yi Wang, Lu Jiang, Chenyu Wang, Lingao Ju, Yuan Zhu, Bo Zhong, Min Wu, Zhen Wang, Lianyun Li
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009847

Kaposi’s sarcoma-associated herpesvirus promotes mesenchymal-to-endothelial transition by resolving the bivalent chromatin of PROX1 gene
Cited by: 8
Author(s): Yiliang Ding, Weikang Chen, Zhengzhou Lu, Yan Wang, Yan Yuan
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009917

The regulation landscape of MAPK signaling cascade for thwarting Bacillus thuringiensis infection in an insect host
Cited by: 31
Author(s): Zhixin Guo, Shi Kang, Qingjun Wu, Shaoli Wang, N. Crickmore, Xuguo Zhou, Alejandra Bravo, Mário Soberón, Youjun Zhang
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009633

Teaching a new mouse old tricks: Humanized mice as an infection model for Variola virus
Cited by: 3
Author(s): Christina L. Hutson, Ashley V. Kondas, Jana M. Ritter, Zachary Reed, Sharon Dietz Ostergaard, Clint N. Morgan, Nadia Gallardo-Romero, Cassandra Tansey, Matthew R. Mauldin, Johanna S. Salzer, Christine M. Hughes, Cynthia S. Goldsmith, Darin S. Carroll, Victoria A. Olson
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.ppat.1009932

The type 3 secretion system requires actin polymerization to open translocon pores
Cited by: 8
Author(s): Brian C. Russo, Jeffrey K. Duncan-Lowey, Poyin Chen, Marcia B. Goldberg
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009927

Host phospholipid peroxidation fuels ExoU-dependent cell necrosis and supports Pseudomonas aeruginosa-driven pathology
Cited by: 10
Author(s): Salimata Bagayoko, Stephen Adonai Leon-Icaza, Miriam Pinilla, Audrey Hessel, Karin Santoni, David Péricat, Pierre-Jean Bordignon, Flavie Moreau, Elif Eren, A. Boyance, Emmanuelle Näser, Lise Lefèvre, Céline Berrone, Nino Iakobachvili, Arnaud Métais, Yoann Rombouts, Geanncarlo Lugo‐Villarino, Agnès Coste, Ina Attrée, Dara W. Frank, Hans Clevers, Peter J. Peters, Céline Cougoule, Rémi Planès, Étienne Meunier
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009880

Commensal bacteria augment Staphylococcus aureus infection by inactivation of phagocyte-derived reactive oxygen species
Cited by: 6
Author(s): Josie Gibson, Grace R. Pidwill, Oliver Carnell, Bas G. J. Surewaard, Daria Shamarina, Joshua A. F. Sutton, Charlotte Jeffery, Aurélie Derré-Bobillot, Cristel Archambaud, Matthew K. Siggins, Eric J. G. Pollitt, Simon A. Johnston, Pascale Serror, Shiranee Sriskandan, Stephen A. Renshaw, Simon J. Foster
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009954

The Epstein-Barr virus deubiquitinating enzyme BPLF1 regulates the activity of topoisomerase II during productive infection
Cited by: 7
Author(s): Jinlin Li, Noémi Nagy, Jiangnan Liu, Soham Gupta, Teresa Frisan, Thomas Hennig, Donald P. Cameron, Laura Baranello, Maria G. Masucci
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.ppat.1009493

Phagocytes produce prostaglandin E2 in response to cytosolic Listeria monocytogenes
Cited by: 3
Author(s): Courtney E McDougal, Zachary Morrow, T. Christopher, Seonyoung Kim, Drake Carter, David Stevenson, Daniel Amador‐Noguez, Mark J. Miller, John-Demian Sauer
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.ppat.1009277

Experimental and mathematical insights on the interactions between poliovirus and a defective interfering genome
Cited by: 13
Author(s): Yuta Shirogane, Elsa Rousseau, Jakub Voznica, Yinghong Xiao, Weiheng Su, Adam Catching, Zachary J. Whitfield, Igor M. Rouzine, Simone Bianco, Raul Andino
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.ppat.1009929

In vitro selection of Remdesivir resistance suggests evolutionary predictability of SARS-CoV-2
Cited by: 93
Author(s): Agnieszka M. Szemiel, Andres Merits, Richard Orton, Oscar A MacLean, Rute Maria Pinto, Arthur Wickenhagen, Gauthier Lieber, Matthew L. Turnbull, Sainan Wang, Wilhelm Furnon, Nicolás M. Suárez, Daniel Mair, Ana da Silva Filipe, Brian J. Willett, Sam J. Wilson, Arvind H. Patel, Emma C. Thomson, Massimo Palmarini, Alain Kohl, Meredith Stewart
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1009963

eIF4A, a target of siRNA derived from rice stripe virus, negatively regulates antiviral autophagy by interacting with ATG5 in Nicotiana benthamiana
Cited by: 10
Author(s): Xiangxiang Zhang, Yueyan Yin, Yunhe Su, Zhaoxing Jia, Liangliang Jiang, Yuwen Lu, Hongying Zheng, Jiejun Peng, Shaofei Rao, Guanwei Wu, Jianping Chen, Fei Yan
Software Mentions: 1
Published: almost 5 years ago

10.1126/sciadv.aay4740

Elucidating ecological complexity: Unsupervised learning determines global marine eco-provinces
Cited by: 43
Author(s): Maike Sonnewald, Stephanie Dutkiewicz, Christopher N. Hill, Gaël Forget
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-94922-x

Heavy-ion production of 77Br and 76Br
Cited by: 2
Author(s): Sean McGuinness, John Wilkinson, Graham F. Peaslee
Software Mentions: 1
Published: about 5 years ago

10.1100/2012/303852

Cancer Surgery in the Elderly
Cited by: 29
Author(s): Gopal C. Kowdley, Nishant Merchant, James P. Richardson, J Somerville, Myriam Gorospe, Steven C. Cunningham
Software Mentions: 1
Published: over 14 years ago

10.1155/2015/692084

Hybrid Scheduling Model for Independent Grid Tasks
Cited by: 1
Author(s): J. Shanthini, T. Kalaikumaran, S. Karthik
Software Mentions: 1
Published: over 11 years ago

10.1002/sim.7694

Derivative estimation for longitudinal data analysis: Examining features of blood pressure measured repeatedly during pregnancy
Cited by: 9
Author(s): Andrew Simpkin, Maŕıa Durbán, Debbie A. Lawlor, Corrie Macdonald‐Wallis, Margaret T May, Chris Metcalfe, Kate Tilling
Software Mentions: 1
Published: over 8 years ago

10.1177/0962280216666111

Measurement error, time lag, unmeasured confounding: Considerations for longitudinal estimation of the effect of a mediator in randomised clinical trials
Cited by: 20
Author(s): Kimberley Goldsmith, Trudie Chalder, Peter White, Michael Sharpe, Andrew Pickles
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.tics.2019.10.003

How Curiosity Enhances Hippocampus-Dependent Memory: The Prediction, Appraisal, Curiosity, and Exploration (PACE) Framework
Cited by: 104
Author(s): Matthias J. Gruber, Charan Ranganath
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.01581-17

Time-Resolved Transposon Insertion Sequencing Reveals Genome-Wide Fitness Dynamics during Infection
Cited by: 39
Author(s): Guanhua Yang, Gabriel Billings, Troy P. Hubbard, Joseph S. Park, Ka Yin Leung, Qin Liu, Brigid M. Davis, Yuanxing Zhang, Qiyao Wang, Matthew K. Waldor
Software Mentions: 1
Published: almost 9 years ago

10.1007/s11606-020-05914-y

Strange Bedfellows: Coordinating Medicare and Medicaid to Achieve Cost-Effective Care for Patients with the Greatest Health Needs
Cited by: 4
Author(s): Arielle Elmaleh-Sachs, Eric C. Schneider
Software Mentions: 1
Published: over 6 years ago

10.1029/2019JC015604

How Can Phytoplankton Pigments Be Best Used to Characterize Surface Ocean Phytoplankton Groups for Ocean Color Remote Sensing Algorithms?
Cited by: 44
Author(s): Sasha J. Kramer, David A. Siegel
Software Mentions: 1
Published: almost 7 years ago

10.1155/2018/1652567

Protein Engineering Strategies to Expand CRISPR-Cas9 Applications
Cited by: 19
Author(s): Lucas F. Ribeiro, Laryssa Freitas Ribeiro, Matheus Quintana Barreto, Richard J. Ward
Software Mentions: 1
Published: about 8 years ago

10.1186/s13045-021-01055-9

Third-line therapy for chronic myeloid leukemia: current status and future directions
Cited by: 58
Author(s): Jorge Cortes, Fabian Lang
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph10115299

Risk Selection, Risk Adjustment and Choice: Concepts and Lessons from the Americas
Cited by: 16
Author(s): Randall P. Ellis, Juan Gabriel Fernández
Software Mentions: 1
Published: almost 13 years ago

10.3390/ijerph14070715

Sustainable Use of Pesticide Applications in Citrus: A Support Tool for Volume Rate Adjustment
Cited by: 24
Author(s): Cruz Garcerá, Alberto Fonte, Enrique Moltó, Patricia Chueca
Software Mentions: 1
Published: about 9 years ago

10.3390/ijerph17186849

Physical Activity, Sport and Physical Education in Northern Ireland School Children: A Cross-Sectional Study
Cited by: 12
Author(s): Sinead Connolly, Angela Carlin, Anne Johnston, Catherine Woods, Cormac Powell, Sarahjane Belton, Wesley O’Brien, Jean Saunders, Christina Duff, Orlagh Farmer, Marie Murphy
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijerph18020829

Pilot Study to Develop and Test Palliative Care Quality Indicators for Nursing Homes
Cited by: 4
Author(s): Charlèss Dupont, Robrecht De Schreye, Joachim Cohen, Mark De Ridder, Lieve Van den Block, Luc Deliëns, Kathleen Leemans
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20092294

Plasticity and Constraints of tRNA Aminoacylation Define Directed Evolution of Aminoacyl-tRNA Synthetases
Cited by: 11
Author(s): Ana Crnković, Oscar Vargas-Rodriguez, Dieter Söll
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20225583

Computational Nanoscopy of Tight Junctions at the Blood–Brain Barrier Interface
Cited by: 15
Author(s): Nandhini Rajagopal, Flaviyan Jerome Irudayanathan, Shikha Nangia
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21228431

Sequence-Dependent Nanofiber Structures of Phenylalanine and Isoleucine Tripeptides
Cited by: 3
Author(s): Qinsi Xiong, Ziye Liu, Wei Han
Software Mentions: 1
Published: almost 6 years ago

10.1177/1750458920978858

Awareness of Human Factors in the operating theatres during the COVID-19 pandemic
Cited by: 2
Author(s): Carolina Britton, Gareth Hayman, Nicola Stroud
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007383

Why do G-quadruplexes dimerize through the 5’-ends? Driving forces for G4 DNA dimerization examined in atomic detail
Cited by: 25
Author(s): Mateusz Kogut, Cyprian Kleist, Jacek Czub
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1009109

Sperm migration in the genital tract—In silico experiments identify key factors for reproductive success
Cited by: 3
Author(s): Jorin Diemer, Jens Hahn, Björn Goldenbogen, Karin Müller, Edda Klipp
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008502

Real-time structural motif searching in proteins using an inverted index strategy
Cited by: 11
Author(s): Sebastian Bittrich, S.K. Burley, Alexander Rose
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1009286

Modelling conformational state dynamics and its role on infection for SARS-CoV-2 Spike protein variants
Cited by: 70
Author(s): Natália Teruel, Olivier Mailhot, Rafaël Najmanovich
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1009134

Internality and the internalisation of failure: Evidence from a novel task
Cited by: 0
Author(s): Federico Mancinelli, Jonathan P. Roiser, Peter Dayan
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008762

How public reaction to disease information across scales and the impacts of vector control methods influence disease prevalence and control efficacy
Cited by: 1
Author(s): Jing Jiao, G. Suárez, Nina H. Fefferman
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1007935

Brain dynamics for confidence-weighted learning
Cited by: 22
Author(s): Florent Meyniel
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007718

Mechanisms underlying attraction to odors in walking Drosophila
Cited by: 13
Author(s): Liangyu Tao, Siddhi Ozarkar, Vikas Bhandawat
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007450

Maximizing the reusability of gene expression data by predicting missing metadata
Cited by: 4
Author(s): Pei-Yau Lung, Dongrui Zhong, Xiaodong Pang, Yan Li, Jinfeng Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007801

Electrostatic and bending energies predict staggering and splaying in nonmuscle myosin II minifilaments
Cited by: 8
Author(s): Tom L. Kaufmann, Ulrich S. Schwarz
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1009378

Conventional measures of intrinsic excitability are poor estimators of neuronal activity under realistic synaptic inputs
Cited by: 2
Author(s): Adrienn Szabó, Katalin Schlett, Attila Szűcs
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1007917

Compositional Lotka-Volterra describes microbial dynamics in the simplex
Cited by: 41
Author(s): Tyler Joseph, Liat Shenhav, João B. Xavier, Eran Halperin, Itsik Pe’er
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007525

Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli
Cited by: 33
Author(s): Bin Du, Laurence T. Yang, Colton J. Lloyd, Xin Fang, Jaehyung Kim
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1007951

Model-based and phylogenetically adjusted quantification of metabolic interaction between microbial species
Cited by: 5
Author(s): Tony J. Lam, Moses Stamboulian, Wontack Han, Yuzhen Ye
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008481

Hierarchical motor adaptations negotiate failures during force field learning
Cited by: 4
Author(s): Tsuyoshi Ikegami, Gowrishankar Ganesh, Tricia L. Gibo, Toshinori Yoshioka, Rieko Osu, Mitsuo Kawato
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007708

Mechanistic models of PLC/PKC signaling implicate phosphatidic acid as a key amplifier of chemotactic gradient sensing
Cited by: 4
Author(s): Jamie L. Nosbisch, Anisur Rahman, Krithika Mohan, Timothy C. Elston, James E. Bear, Jason M. Haugh
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008079

ADP is the dominant controller of AMP-activated protein kinase activity dynamics in skeletal muscle during exercise
Cited by: 10
Author(s): Ian F. Coccimiglio, D. Clarke
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1009264

Mitigating COVID-19 outbreaks in workplaces and schools by hybrid telecommuting
Cited by: 9
Author(s): Simon Mauras, Vincent Cohen-Addad, Guillaume Duboc, Max Dupré la Tour, Paolo Frasca, Claire Mathieu, Lulla Opatowski, Laurent Viennot
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1007740

Basal leakage in oscillation: Coupled transcriptional and translational control using feed-forward loops
Cited by: 3
Author(s): Ignasius Joanito, Ching‐Cher Sanders Yan, Jhih‐Wei Chu, Shu-Hsing Wu, Chao‐Ping Hsu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008483

Unbiased and efficient log-likelihood estimation with inverse binomial sampling
Cited by: 21
Author(s): Bas van Opheusden, Luigi Acerbi, Wei Ji
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007842

Critical role of deadenylation in regulating poly(A) rhythms and circadian gene expression
Cited by: 4
Author(s): Xiangyu Yao, Shihoko Kojima, Jing Chen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009045

Thalamo-cortical spiking model of incremental learning combining perception, context and NREM-sleep
Cited by: 7
Author(s): Bruno Golosio, Chiara De Luca, Cristiano Capone, Elena Pastorelli, Giovanni Stegel, Gianmarco Tiddia, G. De Bonis, P. Paolucci
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008235

Use of Angiotensin-Converting Enzyme Inhibitors and Angiotensin II Receptor Blockers During the COVID-19 Pandemic: A Modeling Analysis
Cited by: 11
Author(s): Mehrshad Sadria, Anita T. Layton
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1009436

Levels of SARS-CoV-2 population exposure are considerably higher than suggested by seroprevalence surveys
Cited by: 21
Author(s): Siyu Chen, Jennifer A. Flegg, Lisa J. White, Ricardo Aguás
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pcbi.1009279

Eliminating accidental deviations to minimize generalization error and maximize replicability: Applications in connectomics and genomics
Cited by: 23
Author(s): Eric Bridgeford, Shangsi Wang, Zeyi Wang, Ting Xu, R. Cameron Craddock, Jayanta Dey, Gregory Kiar, William Gray-Roncal, Carlo Colantuoni, Christopher Douville, Stephanie Noble, Carey E. Priebe, Brian Caffo, Michael P. Milham, Xi‐Nian Zuo, Reproducibility, Joshua T. Vogelstein
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1009355

Uncertainty quantification and sensitivity analysis of COVID-19 exit strategies in an individual-based transmission model
Cited by: 6
Author(s): Federica Gugole, Luc E. Coffeng, Wouter Edeling, Benjamin Sanderse, Sake J. de Vlas, Daan Crommelin
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1007734

The research and development process for multiscale models of infectious disease systems
Cited by: 14
Author(s): Winston Garira
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007676

Striated myocyte structural integrity: Automated analysis of sarcomeric z-discs
Cited by: 29
Author(s): Tessa Altair Morris, J. P. Naik, Kirby Sinclair Fibben, Xiangduo Kong, Tohru Kiyono, Kyoko Yokomori, Anna Grosberg
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008128

Engineering recurrent neural networks from task-relevant manifolds and dynamics
Cited by: 23
Author(s): Eli Pollock, Mehrdad Jazayeri
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008497

Value-complexity tradeoff explains mouse navigational learning
Cited by: 5
Author(s): Nadav Amir, Reut Suliman-Lavie, Maayan Tal, Sagiv Shifman, Naftali Tishby, Israel Nelken
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007178

Population modeling of tumor growth curves and the reduced Gompertz model improve prediction of the age of experimental tumors
Cited by: 66
Author(s): Cristina Vaghi, Anne Rodallec, Raphaëlle Fanciullino, Joseph Ciccolini, Jonathan P. Mochel, Michalis Mastri, Clair Poignard, John M.L. Ebos, Sébastien Benzekry
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007611

Self-organization in brain tumors: How cell morphology and cell density influence glioma pattern formation
Cited by: 17
Author(s): Sara Jamous, Andrea Comba, Pedro R. Löwenstein, Sébastien Motsch
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008303

Orientation processing by synaptic integration across first-order tactile neurons
Cited by: 7
Author(s): Etay Hay, J. Andrew Pruszynski
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008736

Generating functional protein variants with variational autoencoders
Cited by: 81
Author(s): Alex Hawkins-Hooker, Florence Depardieu, Sebastien Baur, Guillaume Couairon, Arthur Chen, David Bikard
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008031

Estimation of country-level basic reproductive ratios for novel Coronavirus (SARS-CoV-2/COVID-19) using synthetic contact matrices
Cited by: 93
Author(s): Joe Hilton, Matthew James Keeling
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007618

A stochastic model for simulating ribosome kinetics in vivo
Cited by: 14
Author(s): Eric C. Dykeman
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007752

Stochastic dynamics of Francisella tularensis infection and replication
Cited by: 5
Author(s): Jonathan Carruthers, Grant Lythe, Martín López‐García, Joseph Gillard, Thomas R. Laws, Roman A. Lukaszewski, Carmen Molina-Parı́s
Software Mentions: 1
Published: over 6 years ago