10.1371/journal.pone.0231037

Shift work and long work hours and their association with chronic health conditions: A systematic review of systematic reviews with meta-analyses
Cited by: 101
Author(s): Adovich S. Rivera, Maxwell O Akanbi, Linda O’Dwyer, Megan McHugh
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1007634

Doubting what you already know: Uncertainty regarding state transitions is associated with obsessive compulsive symptoms
Cited by: 12
Author(s): Isaac Fradkin, Casimir J. H. Ludwig, Eran Eldar, Jonathan D. Huppert
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0231125

Analysis of circulating-microRNA expression in lactating Holstein cows under summer heat stress
Cited by: 14
Author(s): Jihwan Lee, Mi Kyung Lee, Jun-Kyu Son, Hyeonju Lim, Euntae Kim, Dong-Hyun Kim, Seungmin Ha, Tai-Young Hur, Seung Hwan Lee, Inchul Choi
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pgen.1008452

Transcriptional and genomic parallels between the monoxenous parasite Herpetomonas muscarum and Leishmania
Cited by: 12
Author(s): Megan A. Sloan, Karen Brooks, Thomas D. Otto, Mandy Sanders, James A. Cotton, Petros Ligoxygakis
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0235868

Cover crop mixture expression is influenced by nitrogen availability and growing degree days
Cited by: 13
Author(s): Bàrbara Baraibar, Ebony G. Murrell, Brosi A. Bradley, Mary E. Barbercheck, David A. Mortensen, Jason P. Kaye, Charles M. White
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0228668

Comparing acoustic and radar deterrence methods as mitigation measures to reduce human-bat impacts and conservation conflicts
Cited by: 10
Author(s): Lia R. V. Gilmour, Marc W. Holderied, S. P. C. Pickering, Gareth Jones
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0248956

Characterizing COVID-19 clinical phenotypes and associated comorbidities and complication profiles
Cited by: 42
Author(s): Elizabeth R. Lusczek, Nicholas E. Ingraham, Basil S. Karam, Jennifer Proper, Lianne Siegel, Erika S. Helgeson, Sahar Lotfi-Emran, Emily Zolfaghari, Emma Jones, Michael Usher, Jeffrey G. Chipman, R. Adams Dudley, Bradley J. Benson, Genevieve B. Melton, Anthony Charles, Monica I. Lupei, Christopher J. Tignanelli
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008387

RNA structure prediction using positive and negative evolutionary information
Cited by: 39
Author(s): Elena Rivas
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1008969

Sequence learning recodes cortical representations instead of strengthening initial ones
Cited by: 0
Author(s): Kristjan Kalm, Dennis Norris
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0241057

Diversity and structural differences of bacterial microbial communities in rhizocompartments of desert leguminous plants
Cited by: 8
Author(s): Ziyuan Zhou, Minghan Yu, Guodong Ding, Guanglei Gao, Yingying He
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0237001

Highs and lows: Genetic susceptibility to daily events
Cited by: 9
Author(s): Maurizio Sicorello, Linda Dieckmann, Dirk Moser, Vanessa Lux, Maike Luhmann, A. Neubauer, Wolff Schlotz, Robert Kumsta
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0239874

Seasonal patterns of ecological uniqueness of anuran metacommunities along different ecoregions in Western Brazil
Cited by: 7
Author(s): Karoline Ceron, Diego José Santana, Francisco Valente‐Neto
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0251130

Aerial survey estimates of polar bears and their tracks in the Chukchi Sea
Cited by: 9
Author(s): Paul B. Conn, Vladimir I. Chernook, Erin E. Moreland, Irina S. Trukhanova, Eric V. Regehr, A. N. Vasiliev, Ryan R. Wilson, Stanislav Belikov, Peter L. Boveng
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0238124

Elderly patients with cancer admitted to intensive care unit: A multicenter study in a middle-income country
Cited by: 0
Author(s): Antônio Paulo Nassar, Mariane da Silva Trevisani, Bárbara Beltrame Bettim, Fernando G. Zampieri, José Albani Carvalho, Amílton Silva, Flávio Geraldo Rezende Freitas, José Roberto Aparecido dos Santos Pinto, Edson Romano, Sílvia Regina Ramos, Guilherme Brenande Alves Faria, Ulysses V. Andrade e Silva, Robson Correa Santos, Edmundo de Oliveira Tommasi, Ana Paula Pierre de Moraes, Bruno Azevedo da Cruz, Fernando A. Bozza, Pedro Caruso, Jorge I. Salluh, Márcio Soares
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0223514

Diagnostic accuracy of midkine on hepatocellular carcinoma: A meta-analysis
Cited by: 8
Author(s): Bo-Han Zhang, Bo Li, Lingxiang Kong, Lvnan Yan, Jiayin Yang
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pcbi.1009370

Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders
Cited by: 4
Author(s): Jaie Woodard, Wei Zheng, Zifeng Yang
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0255803

In silico identification of natural product inhibitors against Octamer-binding transcription factor 4 (Oct4) to impede the mechanism of glioma stem cells
Cited by: 5
Author(s): Chirasmita Nayak, Sanjeev Kumar Singh
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0235370

Experimental methodologies can affect pathogenicity of Batrachochytrium salamandrivorans infections
Cited by: 5
Author(s): Rajeev Kumar, Daniel A. Malagon, Edward Davis Carter, Debra L. Miller, Markese Bohanon, J. Patrick W. Cusaac, Anna C. Peterson, Matthew J. Gray
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0255977

A machine learning approach to predict extreme inactivity in COPD patients using non-activity-related clinical data
Cited by: 1
Author(s): B. Aguilaniu, David J. Hess, É. Kelkel, Amandine Briault, Marie Destors, Jacques Boutros, Pei Zhi Li, Anestis Antoniadis
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0235752

Stable isotope analysis of multiple tissues from Hawaiian honeycreepers indicates elevational movement
Cited by: 5
Author(s): Kristina L. Paxton, Jeffery F Kelly, Sandra M Pletchet, Eben H. Paxton
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0247534

Lettuce (Lactuca sativa) productivity influenced by microbial inocula under nitrogen-limited conditions in aquaponics
Cited by: 9
Author(s): Jessica A. Day, Christian Diener, Anne E. Otwell, Kourtney E. Tams, Brad M. Bebout, Angela M. Detweiler, Michael Lee, Madeline T. Scott, Wilson Ta, Monica Ha, Shienna A. Carreon, Kenny Tong, Abdirizak A. Ali, Sean M. Gibbons, Nitin S. Baliga
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0229873

Development of a methodology to make individual estimates of the precision of liquid chromatography-tandem mass spectrometry drug assay results for use in population pharmacokinetic modeling and the optimization of dosage regimens
Cited by: 7
Author(s): Gellért Balázs Karvaly, Michael Neely, K Kovács, István Vincze, Barna Vásárhelyi, Roger W. Jelliffe
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0224562

Volatile anesthetics versus total intravenous anesthesia in patients undergoing coronary artery bypass grafting: An updated meta-analysis and trial sequential analysis of randomized controlled trials
Cited by: 26
Author(s): Xue‐Feng Jiao, Xiufang Lin, Xiaofeng Ni, Hailong Li, Chuan Zhang, Chunsong Yang, Haoxin Song, Qiusha Yi, Lingli Zhang
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pcbi.1008278

Optimising age coverage of seasonal influenza vaccination in England: A mathematical and health economic evaluation
Cited by: 6
Author(s): Edward M. Hill, Stavros Petrou, Henry Forster, Simon de Lusignan, Ivelina Yonova, Matthew James Keeling
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1009127

Trip duration drives shift in travel network structure with implications for the predictability of spatial disease spread
Cited by: 2
Author(s): J. R. Giles, Derek A. T. Cummings, Bryan T. Grenfell, Andrew J. Tatem, Elisabeth zu Erbach-Schoenberg, C Jessica E Metcalf, Amy Wesolowski
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1007982

It’s about time: Analysing simplifying assumptions for modelling multi-step pathways in systems biology
Cited by: 17
Author(s): Niklas Korsbo, Henrik Jönsson
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0254200

Contextualizing goal preferences in fear-avoidance models. Looking at fatigue as a disabling symptom in fibromyalgia patients
Cited by: 5
Author(s): Cecilia Peñacoba, Irene López‐Gómez, María Ángeles Pastor-Mira, Sofía López-Roig, Carmen Écija
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0244694

Population dynamics of sugarcane borers, Diatraea spp., under different climatic scenarios in Colombia
Cited by: 1
Author(s): Julián Andrés Valencia Arbeláez, Alberto Soto Giraldo, Gabriel Jaime Castaño Villa, Luis Fernando Vallejo Espinosa, Melba Ruth Salazar Gutiérrez, Germán Vargas
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0240177

Understanding American premium chocolate consumer perception of craft chocolate and desirable product attributes using focus groups and projective mapping
Cited by: 13
Author(s): Allison Brown, Alyssa J. Bakke, Helene Hopfer
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0255738

Adenomatous Polyposis Coli loss controls cell cycle regulators and response to paclitaxel in MDA-MB-157 metaplastic breast cancer cells
Cited by: 3
Author(s): Emily Astarita, Sara Maloney, Camden A. Hoover, Bronwyn J. Berkeley, Monica K. VanKlompenberg, T. Murlidharan Nair, Jenifer R. Prosperi
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0252226

Diagnostic accuracy of pelvic magnetic resonance imaging for the assessment of bone marrow involvement in diffuse large B-cell lymphoma
Cited by: 2
Author(s): Qing Ke, Chengcheng Liao, Xiaohong Tan, Baoqiang Guo, Hong Cen, Le‐Qun Li
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0224214

Early succession on slag compared to urban soil: A slower recovery
Cited by: 4
Author(s): Heng-Xing Zou, Alison E. Anastasio, Catherine A. Pfister
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1008003

Biological network growth in complex environments: A computational framework
Cited by: 6
Author(s): Torsten Johann Paul, Philip Kollmannsberger
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0227667

Redefining transcriptional regulation of the APOE gene and its association with Alzheimer’s disease
Cited by: 25
Author(s): Eun-Gyung Lee, Jessica Tulloch, Sunny Chen, Lesley Leong, Aleen Saxton, Brian C. Kraemer, Martin Darvas, C. Dirk Keene, Andrew Shutes‐David, Kaitlin Todd, Steve Millard, Chang‐En Yu
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1008734

Evolution of heterogeneous perceptual limits and indifference in competitive foraging
Cited by: 2
Author(s): Richard P. Mann
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0240841

Risk screening methods for extreme heat: Implications for equity-oriented adaptation
Cited by: 3
Author(s): Lynée L. Turek-Hankins, Miyuki Hino, Katharine J. Mach
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1007847

Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions
Cited by: 18
Author(s): Gregory L. Medlock, Thomas J. Moutinho, Jason A. Papin
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1007731

AncesTree: An interactive immunoglobulin lineage tree visualizer
Cited by: 13
Author(s): Mathilde Foglierini, Leontios Pappas, Antonio Lanzavecchia, Davide Corti, Laurent Perez
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0229606

Postprandial transfer of colostral extracellular vesicles and their protein and miRNA cargo in neonatal calves
Cited by: 13
Author(s): Benedikt Kirchner, Dominik Buschmann, Vijay Paul, Michael W. Pfaffl
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1009014

Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine
Cited by: 8
Author(s): Qiang Gu, Anup Kumar, Simon Bray, Allison Creason, Alireza Khanteymoori, Vahid Jalili, Björn Grüning, Jeremy Goecks
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0242354

Characterization of commercial poultry farms in Mexico: Towards a better understanding of biosecurity practices and antibiotic usage patterns
Cited by: 6
Author(s): Erika Ornelas-Eusebio, Gary Garcı́a-Espinosa, Karine Laroucau, Gina Zanella
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0228503

Lumenal calcification and microvasculopathy in fetuin-A-deficient mice lead to multiple organ morbidity
Cited by: 33
Author(s): Marietta Herrmann, Anne Babler, Irina Moshkova, Felix Gremse, Fabian Kießling, Ulrike Kusebauch, Valentin Nelea, Rafael Kramann, Robert L. Moritz, Marc D. McKee, Willi Jahnen‐Dechent
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0253037

A meta-analysis of transcriptomic profiles of Huntington’s disease patients
Cited by: 14
Author(s): Manuel Seefelder, Stefan Kochanek
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0236348

Unraveling the molecular pathobiology of vocal fold systemic dehydration using an in vivo rabbit model
Cited by: 8
Author(s): Naíla Cannes do Nascimento, Andrea Pires dos Santos, M. Preeti Sivasankar, Abigail Cox
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0246446

Using touchscreen equipped operant chambers to study animal cognition. Benefits, limitations, and advice
Cited by: 8
Author(s): Benjamin M Seitz, Kelsey McCune, Maggie MacPherson, Luisa Bergeron, Aaron P. Blaisdell, Corina J. Logan
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008243

Inferring a complete genotype-phenotype map from a small number of measured phenotypes
Cited by: 7
Author(s): Zachary Sailer, Sarah H. Shafik, Robert L. Summers, Alex Joule, Alice Patterson-Robert, R. L. Martin
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0253341

Metaplot: A new Stata module for assessing heterogeneity in a meta-analysis
Cited by: 5
Author(s): Jalal Poorolajal, Shahla Noornejad
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0250338

Die-off of plant pathogenic bacteria in tile drainage and anoxic water from a managed aquifer recharge site
Cited by: 5
Author(s): Carina Eisfeld, J.M. van der Wolf, Boris M. van Breukelen, Gertjan Medema, J. Velstra, Jack Schijven
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1009411

ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer
Cited by: 5
Author(s): Juan L. Trincado, Marina Reixachs‐Solé, Judith Pérez-Granado, Tim Fugmann, Ferrán Sanz, Jun Yokota, Eduardo Eyras
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0242520

On the agreement between bibliometrics and peer review: Evidence from the Italian research assessment exercises
Cited by: 5
Author(s): Alberto Baccini, Lucio Barabesi, Giuseppe De Nicolao
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1008018

Visual perception of liquids: Insights from deep neural networks
Cited by: 11
Author(s): Jan Jaap R. van Assen, Shin’ya Nishida, Roland W. Fleming
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0238071

Research data sharing in the Australian national science agency: Understanding the relative importance of organisational, disciplinary and domain-specific influences
Cited by: 4
Author(s): Claire M. Mason, Paul Box, Shanae M. Burns
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pgen.1008537

Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation
Cited by: 33
Author(s): Gregory R. Keele, Bryan C. Quach, Jennifer W. Israel, Grace A. Chappell, Lauren Lewis, Alexias Safi, Jeremy M. Simon, Paul Cotney, Gregory E. Crawford, William Valdar, Ivan Rusyn, Terrence S. Furey
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1007453

TAPES: A tool for assessment and prioritisation in exome studies
Cited by: 15
Author(s): Alexandre Xavier, Rodney J. Scott, Bente A. Talseth‐Palmer
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0248374

Belief in sexism shift: Defining a new form of contemporary sexism and introducing the belief in sexism shift scale (BSS scale)
Cited by: 5
Author(s): Miriam Katharina Zehnter, Francesca Manzi, Patrick E. Shrout, Madeline E. Heilman
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008310

Graph neural fields: A framework for spatiotemporal dynamical models on the human connectome
Cited by: 12
Author(s): Marco Aqil, Selen Atasoy, Morten L. Kringelbach, Rikkert Hindriks
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008061

Protein sequence optimization with a pairwise decomposable penalty for buried unsatisfied hydrogen bonds
Cited by: 16
Author(s): Brian Coventry, David Baker
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0253989

Evaluating extraction methods to study canine urine microbiota
Cited by: 7
Author(s): Ryan Mrofchak, Christopher Madden, Morgan V. Evans, Vanessa L. Hale
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0237241

Associations between historical redlining and birth outcomes from 2006 through 2015 in California
Cited by: 82
Author(s): Anthony Nardone, Joan A. Casey, Kara E. Rudolph, Deborah Karasek, Mahasin S. Mujahid, Rachel Morello‐Frosch
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0232681

Network analysis of regional livestock trade in West Africa
Cited by: 24
Author(s): Valerie C. Valerio, Olivier Walther, M. Eilittä, Brahima Cissé, Rachata Muneepeerakul, Gregory A. Kiker
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0221498

The effect of overnight consolidation in the perceptual learning of non-native tonal contrasts
Cited by: 14
Author(s): Zhen Qin, Caicai Zhang
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1008114

HippoUnit: A software tool for the automated testing and systematic comparison of detailed models of hippocampal neurons based on electrophysiological data
Cited by: 9
Author(s): Sára Saray, Christian Rössert, Shailesh Appukuttan, Rosanna Migliore, Paola Vitale, Carmen Alina Lupaşcu, Luca Bologna, Werner Van Geit, Armando Romani, Andrew Davison, Eilif Müller, Tamás F. Freund, Szabolcs Káli
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1009227

Relating simulation studies by provenance—Developing a family of Wnt signaling models
Cited by: 5
Author(s): Kai Budde, Jacob Smith, Pia Wilsdorf, Fiete Haack, Adelinde M. Uhrmacher
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0237351

Empirical vs. light-use efficiency modelling for estimating carbon fluxes in a mid-succession ecosystem developed on abandoned karst grassland
Cited by: 5
Author(s): Koffi Dodji Noumonvi, Mitja Ferlan
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0253741

Transcriptome and proteome of the corm, leaf and flower of Hypoxis hemerocallidea (African potato)
Cited by: 0
Author(s): Mihai-Silviu Tomescu, Selisha A. Sooklal, Thuto Ntsowe, Previn Naicker, Barbara Darnhofer, Robert H. Archer, Stoyan Stoychev, Dirk Swanevelder, Ruth Birner‐Grünberger, Karl Rumbold
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1007219

Revisiting the “satisfaction of spatial restraints” approach of MODELLER for protein homology modeling
Cited by: 11
Author(s): Giacomo Janson, Alessandro Grottesi, Marco Pietrosanto, Gabriele Ausiello, Giulia Guarguaglini, Alessandro Paiardini
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1008422

Systematic clustering algorithm for chromatin accessibility data and its application to hematopoietic cells
Cited by: 2
Author(s): Azusa Tanaka, Yasuhiro Ishitsuka, Hiroki Ohta, Akihiro Fujimoto, Jun-ichirou Yasunaga, Masao Matsuoka
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0245756

Birds of a feather moult together: Differences in moulting distribution of four species of storm-petrels
Cited by: 4
Author(s): Anne N. M. A. Ausems, Grzegorz Skrzypek, Katarzyna Wojczulanis‐Jakubas, Dariusz Jakubas
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1009041

Ten simple rules for making a vocabulary FAIR
Cited by: 19
Author(s): Simon J. Cox, Alejandra N. González-Beltrán, Barbara Magagna, Maria-Cristina Marinescu
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0232273

The role of meteorological factors on mumps incidence among children in Guangzhou, Southern China
Cited by: 12
Author(s): Jianyun Lu, Zhicong Yang, Xiaowei Ma, Mengmeng Ma, Zhoubin Zhang
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1008286

Breaking the circularity in circular analyses: Simulations and formal treatment of the flattened average approach
Cited by: 8
Author(s): Howard Bowman, Joseph Brooks, Omid Hajilou, Alexia Zoumpoulaki, Vladimir Litvak
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0224342

Estimating relative CWD susceptibility and disease progression in farmed white-tailed deer with rare PRNP alleles
Cited by: 24
Author(s): Nicholas J. Haley, Kahla Merrett, Amy Stein, Dennis A. Simpson, Andrew Carlson, Gordon Mitchell, Antanas Staskevicius, Tracy A. Nichols, Aaron Lehmkuhl, Bruce V. Thomsen
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0238057

First field estimation of greenhouse gas release from European soil-dwelling Scarabaeidae larvae targeting the genus Melolontha
Cited by: 2
Author(s): Carolyn-Monika Görres, Claudia Kammann
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0242677

Structures of three MORN repeat proteins and a re-evaluation of the proposed lipid-binding properties of MORN repeats
Cited by: 16
Author(s): Sara Sajko, Irina Grishkovskaya, Július Košťan, Melissa A. Graewert, Kim Setiawan, Linda Trübestein, Korbinian Niedermüller, Charlotte Gehin, Antonio Sponga, Martin Puchinger, Anne‐Claude Gavin, Thomas A. Leonard, D. I. Svergun, Terry Smith, Brooke Morriswood, Kristina Djinović-Carugo
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pntd.0008295

Molecular surveillance over 14 years confirms reduction of Plasmodium vivax and falciparum transmission after implementation of Artemisinin-based combination therapy in Papua, Indonesia
Cited by: 8
Author(s): Zuleima Pava, Agatha M. Puspitasari, Angela Rumaseb, Irene Handayuni, Leily Trianty, Retno A. S. Utami, Yusrifar K. Tirta, Faustina Helena Burdam, Enny Kenangalem, Grennady Wirjanata, Steven Kho, Hidayat Trimarsanto, Nicholas M. Anstey, Jeanne Rini Poespoprodjo, Rintis Noviyanti, Ric N. Price, Jutta Marfurt, Sarah Auburn
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0254562

DNA methylation analyses identify an intronic ZDHHC6 locus associated with time to recurrent stroke in the Vitamin Intervention for Stroke Prevention (VISP) clinical trial
Cited by: 4
Author(s): Nicole M. Davis Armstrong, Weimin Chen, Fang‐Chi Hsu, Michael S. Brewer, Natàlia Cullell, Israel Fernández‐Cadenas, Stephen R. Williams, Michèle M. Sale, Bradford B. Worrall, Keith L. Keene
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pntd.0008235

Persistence of Brucella abortus lineages revealed by genomic characterization and phylodynamic analysis
Cited by: 11
Author(s): Marcela Suárez-Esquivel, Gabriela Hernández-Mora, Nazareth Ruíz-Villalobos, Elías Barquero-Calvo, Carlos Chacón-Díaz, Jason T. Ladner, Gerardo Oviedo-Sánchez, Jeffrey T. Foster, Norman Rojas‐Campos, Esteban Chaves-Olarte, Nicholas R. Thomson, Edgardo Moreno, Caterina Guzmán-Verri
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0230490

Year-round temporal stability of a tropical, urban plant-pollinator network
Cited by: 15
Author(s): Alyssa B. Stewart, Pattharawadee Waitayachart
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1008489

A novel virtual screening procedure identifies Pralatrexate as inhibitor of SARS-CoV-2 RdRp and it reduces viral replication in vitro
Cited by: 40
Author(s): Haiping Zhang, Yang Yang, Junxin Li, Min Wang, Konda Mani Saravanan, Jinli Wei, Jiawei Ng, Tofazzal Hossain, Maoxuan Liu, Huiling Zhang, Xiaohu Ren, Yi Pan, Yin Peng, Yi Shi, Xiaochun Wan, Yingxia Liu, Yanjie Wei
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0227076

All of gene expression (AOE): An integrated index for public gene expression databases
Cited by: 29
Author(s): Hidemasa Bono
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0245589

Efficient neural spike sorting using data subdivision and unification
Cited by: 3
Author(s): Masood Hassan, Rakesh Veerabhadrappa, Asim Bhatti
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008222

Genome Complexity Browser: Visualization and quantification of genome variability
Cited by: 1
Author(s): Alexander I. Manolov, Dmitry N. Konanov, Dmitry E. Fedorov, Ivan Osmolovsky, Rinat Vereshchagin, Elena N. Ilina
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1008830

Using Hawkes Processes to model imported and local malaria cases in near-elimination settings
Cited by: 9
Author(s): H. Juliette T. Unwin, Isobel Routledge, Seth Flaxman, Marian-Andrei Rizoiu, Shengjie Lai, Justin M. Cohen, Daniel J. Weiss, Swapnil Mishra, Samir Bhatt
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0228687

Pre-analytical error for three point of care venous blood testing platforms in acute ambulatory settings: A mixed methods service evaluation
Cited by: 3
Author(s): Thomas R Fanshawe, Margaret Glogowska, George Edwards, P Turner, Ian Smith, Rosie Steele, Caroline Croxson, John M. Bowen, Gail Hayward
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1009250

IUSMMT: Survival mediation analysis of gene expression with multiple DNA methylation exposures and its application to cancers of TCGA
Cited by: 7
Author(s): Zhonghe Shao, Ting Wang, Meng Zhang, Zhou Jiang, Shuiping Huang, Ping Zeng
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pntd.0009346

Spatiotemporal distribution of cutaneous leishmaniasis in Sri Lanka and future case burden estimates
Cited by: 8
Author(s): Nadira D. Karunaweera, Sanath Senanayake, Samitha Ginige, Hermali Silva, Nuwani Manamperi, Nilakshi Samaranayake, Rajika Dewasurendra, Panduka Karunanayake, Deepa Gamage, Nissanka de Silva, Upul Senarath, Guofa Zhou
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0255986

Stockpiled personal protective equipment and knowledge of pandemic plans as predictors of perceived pandemic preparedness among German general practitioners
Cited by: 9
Author(s): Arno Stöcker, Ibrahim Demirer, Sophie Gunkel, Jan Hoffmann, Laura Mause, Tim Ohnhäuser, Nadine Scholten
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0255822

Evaluation of the severity of nonalcoholic fatty liver disease through analysis of serum exosomal miRNA expression
Cited by: 5
Author(s): Jeong‐An Gim, Soo Min Bang, Young‐Sun Lee, Sun Young Yim, Young Kul Jung, Hayeon Kim, Baek-hui Kim, Ji Hoon Kim, Yeon Seok Seo, Hyung Joon Yim, Jong Eun Yeon, Soon Ho Um, Kwan Soo Byun
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0246869

Uniting against a common enemy: Perceived outgroup threat elicits ingroup cohesion in chimpanzees
Cited by: 8
Author(s): James Brooks, Ena Onishi, Isabelle R. Clark, Manuel Bohn, Shinya Yamamoto
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1007249

Predicting Meridian in Chinese traditional medicine using machine learning approaches
Cited by: 33
Author(s): Yinyin Wang, Mohieddin Jafari, Yun Tang, Jing Tang
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pntd.0008056

Machine learning and dengue forecasting: Comparing random forests and artificial neural networks for predicting dengue burden at national and sub-national scales in Colombia
Cited by: 33
Author(s): Naizhuo Zhao, Katia Charland, Mabel Carabalí, Elaine O. Nsoesie, Mathieu Maheu‐Giroux, Erin E. Rees, Mengru Yuan, César García Balaguera, Gloria Jaramillo Ramirez, Kate Zinszer
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1009298

Enhancing oscillations in intracranial electrophysiological recordings with data-driven spatial filters
Cited by: 8
Author(s): Natalie Schaworonkow, Bradley Voytek
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1009040

A reaction-diffusion network model predicts a dual role of Cactus/IκB to regulate Dorsal/NFκB nuclear translocation in Drosophila
Cited by: 0
Author(s): Claudio D. T. Barros, Maira Arruda Cardoso, Paulo Mascarello Bisch, Helena Araujo, Francisco J. P. Lopes
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pntd.0008655

Practical and effective diagnosis of animal anthrax in endemic low-resource settings
Cited by: 14
Author(s): Olubunmi Rhoda Aminu, Tiziana Lembo, Ruth N. Zadoks, Roman Biek, Suzanna Lewis, Ireen Kiwelu, Blandina T Mmbaga, Deogratius Mshanga, Gabriel Shirima, Matt Denwood, Taya Forde
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pntd.0007640

Regulation of hepatic microRNAs in response to early stage Echinococcus multilocularis egg infection in C57BL/6 mice
Cited by: 11
Author(s): Ghalia Boubaker, Sebastian Strempel, Andrew Hemphill, Norbert Müller, Junhua Wang, Bruno Gottstein, Markus Spiliotis
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0240585

The mediating effects of public genomic knowledge in precision medicine implementation: A structural equation model approach
Cited by: 2
Author(s): John J O Mogaka, Moses John Chimbari
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1008914

WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans
Cited by: 29
Author(s): Laetitia Hebert, Tosif Ahamed, Á. S. Costa, Liam O’Shaughnessy, Greg J. Stephens
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1007756

3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries
Cited by: 42
Author(s): Christopher T. Lee, Justin G. Laughlin, Nils Angliviel de La Beaumelle, Rommie E. Amaro, J. Andrew McCammon, Ravi Ramamoorthi, Michael Holst, Padmini Rangamani
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pntd.0009719

Maxicircle architecture and evolutionary insights into Trypanosoma cruzi complex
Cited by: 6
Author(s): Luisa Berná, Gonzalo Greif, Sebastián Pita, Paula Faral-Tello, Florencia Díaz-Viraqué, Rita de Cássia Moreira de Souza, Gustavo Adolfo Vallejo, Fernando Álvarez-Valín, Carlos Robello
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0229294

Catecholaminergic modulation of the cost of cognitive control in healthy older adults
Cited by: 9
Author(s): Monja I. Froböse, Andrew Westbrook, Mirjam Bloemendaal, Esther Aarts, Roshan Cools
Software Mentions: 4
Published: over 6 years ago