Ecosyste.ms: Papers

10.1371/journal.pcbi.1008919

Detecting adherence to the recommended childhood vaccination schedule from user-generated content in a US parenting forum
Cited by: 5
Author(s): Lorenzo Betti, Gianmarco De Francisci Morales, Laetitia Gauvin, Kyriaki Kalimeri, Yelena Mejova, Daniela Paolotti, Michele Starnini
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1008018

Visual perception of liquids: Insights from deep neural networks
Cited by: 11
Author(s): Jan Jaap R. van Assen, Shin’ya Nishida, Roland W. Fleming
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1008955

Computational phenotyping of brain-behavior dynamics underlying approach-avoidance conflict in major depressive disorder
Cited by: 12
Author(s): Mads Lund Pedersen, Maria Ironside, Ken‐ichi Amemori, Callie L. McGrath, Min Su Kang, Ann M. Graybiel, Diego A. Pizzagalli, Michael J. Frank
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0228188

Precision medicine and actionable alterations in lung cancer: A single institution experience
Cited by: 7
Author(s): Isa Mambetsariev, Yingyu Wang, Chen Chen, Sorena Nadaf, Rebecca Pharaon, Jeremy Fricke, Idoroenyi Amanam, Arya Amini, Andrea Bild, Peiguo Chu, Loretta Erhunmwunsee, Jae Kim, Janet Munu, Raju Pillai, Dan J. Raz, Sagus Sampath, Lalitkumar K. Vora, Fang Qiu, Lynette M. Smith, Surinder K. Batra, Erminia Massarelli, Marianna Koczywas, Karen L. Reckamp, Ravi Salgia
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0224562

Volatile anesthetics versus total intravenous anesthesia in patients undergoing coronary artery bypass grafting: An updated meta-analysis and trial sequential analysis of randomized controlled trials
Cited by: 26
Author(s): Xue‐Feng Jiao, Xiufang Lin, Xiaofeng Ni, Hailong Li, Chuan Zhang, Chunsong Yang, Haoxin Song, Qiusha Yi, Lingli Zhang
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0236893

A facet atlas: Visualizing networks that describe the blends, cores, and peripheries of personality structure
Cited by: 22
Author(s): Ted Schwaba, Mijke Rhemtulla, Christopher J. Hopwood, Wiebke Bleidorn
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1007453

TAPES: A tool for assessment and prioritisation in exome studies
Cited by: 15
Author(s): Alexandre Xavier, Rodney J. Scott, Bente A. Talseth‐Palmer
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0246473

The forests of the midwestern United States at Euro-American settlement: Spatial and physical structure based on contemporaneous survey data
Cited by: 6
Author(s): Paciorek Cj, Charles V. Cogbill, Jody A. Peters, John W. Williams, David J. Mladenoff, Andria Dawson, J. S. McLachlan
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0243735

Prevalence of respiratory viruses using polymerase chain reaction in children with wheezing, a systematic review and meta–analysis
Cited by: 3
Author(s): Cyprien Kengne‐Nde, Sébastien Kenmoe, Abdou Fatawou Modiyinji, Richard Njouom
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0246501

Mental health stigma and professional help-seeking attitudes a comparison between Cuba and Germany
Cited by: 6
Author(s): Laura Nohr, Alexis Lorenzo Ruíz, Juan Emilio Sandoval Ferrer, Ulrike Buhlmann
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0227189

Quantifying tourism booms and the increasing footprint in the Arctic with social media data
Cited by: 25
Author(s): Claire A. Runge, Rémi M. Daigle, Vera Helene Hausner
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pcbi.1009411

ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer
Cited by: 5
Author(s): Juan L. Trincado, Marina Reixachs‐Solé, Judith Pérez-Granado, Tim Fugmann, Ferrán Sanz, Jun Yokota, Eduardo Eyras
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0238124

Elderly patients with cancer admitted to intensive care unit: A multicenter study in a middle-income country
Cited by: 0
Author(s): Antônio Paulo Nassar, Mariane da Silva Trevisani, Bárbara Beltrame Bettim, Fernando G. Zampieri, José Albani Carvalho, Amílton Silva, Flávio Geraldo Rezende Freitas, José Roberto Aparecido dos Santos Pinto, Edson Romano, Sílvia Regina Ramos, Guilherme Brenande Alves Faria, Ulysses V. Andrade e Silva, Robson Correa Santos, Edmundo de Oliveira Tommasi, Ana Paula Pierre de Moraes, Bruno Azevedo da Cruz, Fernando A. Bozza, Pedro Caruso, Jorge I. Salluh, Márcio Soares
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pmed.1003731

Menopausal hormone therapy and women’s health: An umbrella review
Cited by: 63
Author(s): Guo Qiang Zhang, Jin Liang Chen, Ying Luo, Maya B. Mathur, Panagiotis Anagnostis, Ulugbek Nurmatov, Madar Talibov, Jing Zhang, Catherine M. Hawrylowicz, Mary Ann Lumsden, Hilary Critchley, Aziz Sheikh, Bo Lundbäck, Cecilia Lässer, Hannu Kankaanranta, Siew Hwa Lee, Bright I. Nwaru
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1008837

Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model
Cited by: 36
Author(s): Gregory L. Watson, Dayuan Xiong, Lu Zhang, Joseph A. Zoller, John Shamshoian, Phillip Sundin, Teresa Bufford, Anne W. Rimoin, Marc A. Suchard, Christina M. Ramirez
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1007770

A framework for integrating directed and undirected annotations to build explanatory models of cis-eQTL data
Cited by: 2
Author(s): David Lamparter, Rajat Bhatnagar, Katja Hebestreit, T. Grant Belgard, Alice Zhang, Victor Hanson-Smith
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0241057

Diversity and structural differences of bacterial microbial communities in rhizocompartments of desert leguminous plants
Cited by: 8
Author(s): Ziyuan Zhou, Minghan Yu, Guodong Ding, Guanglei Gao, Yingying He
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pcbi.1007219

Revisiting the “satisfaction of spatial restraints” approach of MODELLER for protein homology modeling
Cited by: 11
Author(s): Giacomo Janson, Alessandro Grottesi, Marco Pietrosanto, Gabriele Ausiello, Giulia Guarguaglini, Alessandro Paiardini
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pmed.1003602

Parenting interventions to promote early child development in the first three years of life: A global systematic review and meta-analysis
Cited by: 173
Author(s): Joshua Jeong, Emily Franchett, Clariana Vitória Ramos de Oliveira, Karima Rehmani, Aisha K. Yousafzai
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0243422

Socioeconomic and behavioral determinants of cardiovascular diseases among older adults in Belgium and France: A longitudinal analysis from the SHARE study
Cited by: 6
Author(s): Hamid Yimam Hassen, Hilde Bastiaens, Kathleen Van Royen, Steven Abrams
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pcbi.1008347

Integrating across neuroimaging modalities boosts prediction accuracy of cognitive ability
Cited by: 30
Author(s): Javier Rasero, A. Sentis, Fang‐Cheng Yeh, Timothy Verstynen
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0239827

Impact of a candidate vaccine on the dynamics of salmon lice (Lepeophtheirus salmonis) infestation and immune response in Atlantic salmon (Salmo salar L.)
Cited by: 16
Author(s): Jaya Kumari Swain, Yamila Carpio, Lill-Heidi Johansen, Janet Velázquez, Liz Hernández, Yeny Leal, Ajey Kumar, Mario Pablo Estrada
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0237288

First evidence for an aposematic function of a very common color pattern in small insects
Cited by: 0
Author(s): Rebeca Mora-Castro, Marcela Alfaro-Córdoba, Marcela Hernández-Jiménez, Mauricio Fernández Otárola, Michael Méndez-Rivera, Didier Ramírez-Morales, Carlos E. Rodríguez-Rodríguez, Andrés Durán-Rodríguez, Paul Hanson
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pmed.1003738

Tuberculosis preventive therapy for people living with HIV: A systematic review and network meta-analysis
Cited by: 17
Author(s): Mercedes Yanes‐Lane, Edgar Ortíz-Brizuela, Jonathon R. Campbell, Andrea Benedetti, Gavin J. Churchyard, Olivia Oxlade, Dick Menzies
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pcbi.1009250

IUSMMT: Survival mediation analysis of gene expression with multiple DNA methylation exposures and its application to cancers of TCGA
Cited by: 7
Author(s): Zhonghe Shao, Ting Wang, Meng Zhang, Zhou Jiang, Shuiping Huang, Ping Zeng
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0229294

Catecholaminergic modulation of the cost of cognitive control in healthy older adults
Cited by: 9
Author(s): Monja I. Froböse, Andrew Westbrook, Mirjam Bloemendaal, Esther Aarts, Roshan Cools
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pcbi.1008904

High-throughput Interpretation of Killer-cell Immunoglobulin-like Receptor Short-read Sequencing Data with PING
Cited by: 15
Author(s): Wesley M. Marin, Ravi Dandekar, Danillo G. Augusto, Tasneem Yusufali, Bianca Heyn, Jan A. Hofmann, Vinzenz Lange, Jürgen Sauter, Paul J. Norman, Jill A. Hollenbach
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0249860

The successful reintroduction of African wild dogs (Lycaon pictus) to Gorongosa National Park, Mozambique
Cited by: 15
Author(s): Paola Bouley, António Paulo, Mercia Angela, Cole du Plessis, David G. Marneweck
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0240322

Evaluating socio-economic and conservation impacts of management: A case study of time-area closures on Georges Bank
Cited by: 5
Author(s): David M. Keith, Jessica A. Sameoto, Freya Keyser, Christine A. Ward-Paige
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0232128

The engaging nature of interactive gestures
Cited by: 2
Author(s): Arianna Curioni, Günther Knoblich, Natalie Sebanz, Lucia Maria Sacheli
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1009078

lra: A long read aligner for sequences and contigs
Cited by: 50
Author(s): Jimin Ren, Mark Chaisson
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1008222

Genome Complexity Browser: Visualization and quantification of genome variability
Cited by: 1
Author(s): Alexander I. Manolov, Dmitry N. Konanov, Dmitry E. Fedorov, Ivan Osmolovsky, Rinat Vereshchagin, Elena N. Ilina
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0249792

Face masks reduce emotion-recognition accuracy and perceived closeness
Cited by: 130
Author(s): Felix Grundmann, Kai Epstude, Susanne Scheibe
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0235361

Expressing uncertainty in Human-Robot interaction
Cited by: 2
Author(s): Christoph Bartneck, Elena Moltchanova
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0227130

Community- and trophic-level responses of soil nematodes to removal of a non-native tree at different stages of invasion
Cited by: 2
Author(s): Guadalupe Peralta, Ian A. Dickie, G. W. Yeates, Duane A. Peltzer
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0250510

American crocodiles (Crocodylus acutus) as restoration bioindicators in the Florida Everglades
Cited by: 4
Author(s): Venetia Briggs-González, Mathieu Basille, Michael S. Cherkiss, Frank J. Mazzotti
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009466

activin-2 is required for regeneration of polarity on the planarian anterior-posterior axis
Cited by: 13
Author(s): Jennifer Cloutier, Conor L. McMann, Isaac M. Oderberg, Peter W. Reddien
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1007972

Heterogeneous, delayed-onset killing by multiple-hitting T cells: Stochastic simulations to assess methods for analysis of imaging data
Cited by: 7
Author(s): Richard J. Beck, Dario I. Bijker, Joost B. Beltman
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pmed.1003656

SARS-CoV-2 neutralizing antibodies: Longevity, breadth, and evasion by emerging viral variants
Cited by: 100
Author(s): Marc Charabati, Alberto Ospina Stella, Anupriya Aggarwal, D.R. Darley, Deepti Pilli, Daniele Vitale, Vera Merheb, Fiona X Z Lee, Philip Cunningham, G. J. Walker, Christina Fichter, David A. Brown, William D. Rawlinson, Sonia R Isaacs, Vennila Mathivanan, Markus Hoffmann, Stefan Pöhlman, Ohan Mazigi, Daniel Christ, Dominic E. Dwyer, Rebecca Rockett, Vitali Sintchenko, Veronica C. Hoad, David O. Irving, Gregory J. Dore, Iain B Gosbell, Anthony D. Kelleher, Gail V. Matthews, Fabienne Brilot, Stuart Turville
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0224695

Comparison of shape quantification methods for genomic prediction, and genome-wide association study of sorghum seed morphology
Cited by: 13
Author(s): Lisa Sakamoto, Hiromi Kajiya‐Kanegae, Koji Noshita, Hideki Takanashi, Mariko Kobayashi, Toru Kudo, Kentarô Yano, Tsuyoshi Tokunaga, Nobuhiro Tsutsumi, Hiroyoshi Iwata
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0247378

Stool metabolome-microbiota evaluation among children and adolescents with obesity, overweight, and normal-weight using 1H NMR and 16S rRNA gene profiling
Cited by: 11
Author(s): José Diógenes Jaimes, Andrea Slavíčková, Jakub Hurych, Ondřej Cinek, Ben Nichols, Lucie Vodolánová, K. Černý, Jaroslav Havlík
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0236001

Germination response of diverse wild and landrace chile peppers (Capsicum spp.) under drought stress simulated with polyethylene glycol
Cited by: 2
Author(s): Vivian Bernau, Lev Jardón Barbolla, Leah K. McHale, Kristin L. Mercer
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0254089

Cervical cancer risk and access: Utilizing three statistical tools to assess Haitian women in South Florida
Cited by: 2
Author(s): R Moïse, Raymond R. Balise, Camille Ragin, Erin Kobetz
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0232639

Computed tomography-derived radiomic signature of head and neck squamous cell carcinoma (peri)tumoral tissue for the prediction of locoregional recurrence and distant metastasis after concurrent chemo-radiotherapy
Cited by: 27
Author(s): Simon Keek, Sebastian Sanduleanu, Frederik Wesseling, Reinout de Roest, Michiel W. M. van den Brekel, Martijn van der Heijden, Conchita Vens, Giuseppina Calareso, Lisa Licitra, Kathrin Scheckenbach, Marije R. Vergeer, C. René Leemans, Ruud H. Brakenhoff, Irene Nauta, Stefano Cavalieri, Henry C. Woodruff, Tito Poli, Ralph T.H. Leijenaar, Frank Hoebers, Philippe Lambin
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0236495

An unbiased template of the Drosophila brain and ventral nerve cord
Cited by: 57
Author(s): John A. Bogovic, Hideo Otsuna, Larissa Heinrich, Masayoshi Ito, Jennifer Jeter, Geoffrey W. Meissner, Aljoscha Nern, Jennifer Colonell, Oz Malkesman, Kei Ito, Stephan Saalfeld
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0244966

Clinical and pharmacokinetic/dynamic outcomes of prolonged infusions of beta-lactam antimicrobials: An overview of systematic reviews
Cited by: 18
Author(s): Pierre Thabet, Anchal Joshi, Erika MacDonald, Brian Hutton, Wei Cheng, Adrienne Stevens, Salmaan Kanji
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pcbi.1008476

Hi-C implementation of genome structure for in silico models of radiation-induced DNA damage
Cited by: 7
Author(s): Samuel Ingram, Nicholas Henthorn, John-William Warmenhoven, N.F. Kirkby, Ranald I Mackay, Karen J Kirkby, Michael J Merchant
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0252987

Morus alba: Host reaction for Meloidogyne javanica, biological nematicides assessment and study of these relationships with yield and quality of leaves, cocoon and health of the silkworm
Cited by: 0
Author(s): Santino Aleandro da Silva, Renata da Rosa, Rachel Colauto Milanezi Aguiar, Cristianne Cordeiro Nascimento, Andressa Cristina Zamboni Machado
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1008243

Inferring a complete genotype-phenotype map from a small number of measured phenotypes
Cited by: 7
Author(s): Zachary Sailer, Sarah H. Shafik, Robert L. Summers, Alex Joule, Alice Patterson-Robert, R. L. Martin
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0236548

Techno-functional and 3D shape analysis applied for investigating the variability of backed tools in the Late Middle Paleolithic of Central Europe
Cited by: 16
Author(s): Davide Delpiano, Thorsten Uthmeier
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0226548

Extending the use of the World Health Organisations’ water sanitation and hygiene assessment tool for surveys in hospitals – from WASH-FIT to WASH-FAST
Cited by: 12
Author(s): Michuki Maina, Olga Tosas-Auguet, Jacob McKnight, Mathias Zosi, Grace Kimemia, Paul Mwaniki, Arabella Hayter, Margaret Montgomery, Constance Schultsz, Mike English
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0255030

ReVisE: Remote visualization environment for large numerical simulation datasets
Cited by: 0
Author(s): Stepan Orlov, Aleksey Kuzin, Alexey Zhuravlev, Vyacheslav Reshetnikov, Egor Usik, Vladislav Kiev, Andrey Pyatlin
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0241889

Comparative genome analysis of test algal strain NIVA-CHL1 (Raphidocelis subcapitata) maintained in microalgal culture collections worldwide
Cited by: 2
Author(s): Takahiro Yamagishi, Haruyo Yamaguchi, Shigekatsu Suzuki, Mayumi Yoshikawa, Ian Jameson, Maike Lorenz, David R. Nobles, Christine Campbell, Masanori Seki, Masanobu Kawachi, Hiroshi Yamamoto
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pgen.1008935

Horizontal transmission and recombination maintain forever young bacterial symbiont genomes
Cited by: 82
Author(s): Shelbi L. Russell, Evan Pepper-Tunick, Jesper Svedberg, Ashley Byrne, Jennie Ruelas Castillo, Christopher Vollmers, Roxanne A. Beinart, Russell Corbett-Detig
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0232120

Corticosterone and testosterone treatment influence expression of gene pathways linked to meiotic segregation in preovulatory follicles of the domestic hen
Cited by: 2
Author(s): E. Wróbel, Alexandra B. Bentz, W. Walter Lorenz, Steven T. Gardner, Mary T. Mendonça, Kristen J. Navara
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0233841

Whole blood transcriptional responses of very preterm infants during late-onset sepsis
Cited by: 16
Author(s): Sherrianne Ng, Tobias Strunk, Ahwon Lee, Erin E. Gill, Reza Falsafi, Tabitha Woodman, Julie Hibbert, Robert E. W. Hancock, Andrew Currie
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1009774

A scalable Drosophila assay for clinical interpretation of human PTEN variants in suppression of PI3K/AKT induced cellular proliferation
Cited by: 4
Author(s): Payel Ganguly, Landiso Madonsela, Jesse T. Chao, Christopher Loewen, Timothy P. O’Connor, Esther M. Verheyen, Douglas W. Allan
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0250413

Exploring the relationship between maternal prenatal stress and brain structure in premature neonates
Cited by: 6
Author(s): Alexandra Lautarescu, Laila Hadaya, Michael C. Craig, Antonis Makropoulos, Dafnis Batallé, Chiara Nosarti, A. David Edwards, Serena Counsell, Suresh Victor
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pmed.1003703

The latent tuberculosis cascade-of-care among people living with HIV: A systematic review and meta-analysis
Cited by: 17
Author(s): Mayara Lisboa Bastos, Luca Melnychuk, Jonathon R. Campbell, Olivia Oxlade, Dick Menzies
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0247630

The effect of growth rate on otolith-based discrimination of cod (Gadus morhua) ecotypes
Cited by: 2
Author(s): Einar Pétur Jónsson, Steven E. Campana, Jón Sólmundsson, Klara B. Jakobsdóttir, Hlynur Bárðarson
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pcbi.1008256

BARcode DEmixing through Non-negative Spatial Regression (BarDensr)
Cited by: 13
Author(s): Shuonan Chen, Jackson Loper, Xiaoyin Chen, Alex Vaughan, Anthony M. Zador, Liam Paninski
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0242061

List-wise learning to rank biomedical question-answer pairs with deep ranking recursive autoencoders
Cited by: 4
Author(s): Yan Yan, Bowen Zhang, Xufeng Li, Zhenhan Liu
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pcbi.1007924

A validation framework for neuroimaging software: The case of population receptive fields
Cited by: 28
Author(s): Garikoitz Lerma-Usabiaga, Noah C. Benson, Jonathan Winawer, Brian A. Wandell
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0234760

PeskAAS: A near-real-time, open-source monitoring and analytics system for small-scale fisheries
Cited by: 9
Author(s): Alexander Tilley, Joctan Dos Reis Lopes, Shaun P. Wilkinson
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pgen.1009578

Functional-genomic analysis reveals intraspecies diversification of antiviral receptor transporter proteins in Xenopus laevis
Cited by: 1
Author(s): Ian N. Boys, Katrina B. Mar, John W. Schoggins
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1007271

Quantifying the roles of vomiting, diarrhea, and residents vs. staff in norovirus transmission in U.S. nursing home outbreaks
Cited by: 3
Author(s): Carly Adams, D. K. Young, Paul A. Gastañaduy, Prabasaj Paul, Zach Marsh, Aron J. Hall, Benjamin A. Lopman
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1007840

An open source tool to infer epidemiological and immunological dynamics from serological data: serosolver
Cited by: 12
Author(s): James A. Hay, Amanda Minter, Kylie E. C. Ainslie, Justin Lessler, Bingyi Yang, Derek A. T. Cummings, Adam J. Kucharski, Steven Riley
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0254852

Ward-level factors associated with methicillin-resistant Staphylococcus aureus acquisition–an electronic medical records study in Singapore
Cited by: 2
Author(s): Zaw Tun, Dale Fisher, Sharon Salmon, Clarence C. Tam
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009409

Widespread misregulation of inter-species hybrid transcriptomes due to sex-specific and sex-chromosome regulatory evolution
Cited by: 24
Author(s): Santiago Sánchez‐Ramírez, Jörg G Weiss, Cristel G. Thomas, Asher D. Cutter
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009349

Acetyltransferase Enok regulates transposon silencing and piRNA cluster transcription
Cited by: 3
Author(s): Shih-Ying Tsai, Fu Huang
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0239026

Impact of COVID-19 epidemic curtailment strategies in selected Indian states: An analysis by reproduction number and doubling time with incidence modelling
Cited by: 14
Author(s): Arun Mitra, Abhijit Pakhare, Adrija Roy, Ankur Joshi
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0248459

Evaluating the effect of stand properties and site conditions on the forest reflectance from Sentinel-2 time series
Cited by: 9
Author(s): Ewa Grabska, Jarosław Socha
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009669

Genomic islands targeting dusA in Vibrio species are distantly related to Salmonella Genomic Island 1 and mobilizable by IncC conjugative plasmids
Cited by: 5
Author(s): Romain Durand, Florence Deschênes, Vincent Burrus
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0233182

Over 13,000 elements from a single bonebed help elucidate disarticulation and transport of an Edmontosaurus thanatocoenosis
Cited by: 2
Author(s): Keith Snyder, Matthew A. McLain, Jared P. Wood, Arthur V. Chadwick
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0232384

Socio-ecological network structures from process graphs
Cited by: 11
Author(s): Angelyn R. Lao, Heriberto Cabezas, Ákos Orosz, Ferenc Friedler, Raymond R. Tan
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1008833

PDKit: A data science toolkit for the digital assessment of Parkinson’s Disease
Cited by: 2
Author(s): Cosmin Stamate, Joan Saez Pons, David Weston, George Roussos
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1008464

CRISPR editing of sftb-1/SF3B1 in Caenorhabditis elegans allows the identification of synthetic interactions with cancer-related mutations and the chemical inhibition of splicing
Cited by: 13
Author(s): Xènia Serrat, Dmytro Kukhtar, Eric Cornes, Anna Esteve‐Codina, Helena Benlloch, Germano Cecere, Julián Cerón
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1009526

Expression of the cancer-associated DNA polymerase ε P286R in fission yeast leads to translesion synthesis polymerase dependent hypermutation and defective DNA replication
Cited by: 5
Author(s): Ignacio Soriano, Enrique Vázquez, Nagore de León, Sibyl Bertrand, Ellen Heitzer, Sophia Toumazou, Zhihan Bo, Claire Palles, Chen-Chun Pai, Timothy C. Humphrey, Ian Tomlinson, Sue Cotterill, Stephen Kearsey
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1008580

A new model for simultaneous dimensionality reduction and time-varying functional connectivity estimation
Cited by: 23
Author(s): Diego Vidaurre
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0249926

Responsible product design to mitigate excessive gambling: A scoping review and z-curve analysis of replicability
Cited by: 4
Author(s): William H.B. McAuliffe, Timothy C. Edson, Eric R. Louderback, Alexander LaRaja, Debi A. LaPlante
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1007851

LMSM: A modular approach for identifying lncRNA related miRNA sponge modules in breast cancer
Cited by: 16
Author(s): Junpeng Zhang, Taosheng Xu, Lin Liu, Wu Zhang, Chunwen Zhao, Sijing Li, Jiuyong Li, Nini Rao, Thuc Duy Le
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0227530

Soil solution in Swiss forest stands: A 20 year's time series
Cited by: 11
Author(s): Sabine Braun, Simon Tresch, Sabine Augustin
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0238090

Simulation of the COVID-19 epidemic on the social network of Slovenia: Estimating the intrinsic forecast uncertainty
Cited by: 22
Author(s): Žiga Zaplotnik, Aleksandar Gavrić, Luka Medic
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pntd.0009346

Spatiotemporal distribution of cutaneous leishmaniasis in Sri Lanka and future case burden estimates
Cited by: 8
Author(s): Nadira D. Karunaweera, Sanath Senanayake, Samitha Ginige, Hermali Silva, Nuwani Manamperi, Nilakshi Samaranayake, Rajika Dewasurendra, Panduka Karunanayake, Deepa Gamage, Nissanka de Silva, Upul Senarath, Guofa Zhou
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009146

Crumbs and the apical spectrin cytoskeleton regulate R8 cell fate in the Drosophila eye
Cited by: 4
Author(s): Jonathan M. Pojer, Abdul Jabbar Saiful Hilmi, Shu Kondo, Ken Harvey
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0256605

Development of strategic social information seeking: Implications for cumulative culture
Cited by: 2
Author(s): Kirsten H. Blakey, Eva Rafetseder, Mark Atkinson, Elizabeth Renner, Fía Cowan-Forsythe, Shivani J. Sati, Christine A. Caldwell
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0244430

PFP-WGAN: Protein function prediction by discovering Gene Ontology term correlations with generative adversarial networks
Cited by: 7
Author(s): Seyyede Fatemeh Seyyedsalehi, Mahdieh Soleymani, Hamid R. Rabiee, Mohammad R. K. Mofrad
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0256692

“When will it be over?” U.S. children’s questions and parents’ responses about the COVID-19 pandemic
Cited by: 7
Author(s): David Menéndez, Rebecca E Klapper, Michelle Z Golden, Ava R Mandel, Katrina A Nicholas, Maria H Schapfel, Olivia O Silsby, Kailee A Sowers, Dillanie Sumanthiran, Victoria E Welch, Karl S. Rosengren
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0247553

What cancer research makes the news? A quantitative analysis of online news stories that mention cancer studies
Cited by: 5
Author(s): Laura Moorhead, Melinda Krakow, Lauren A. Maggio
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0251366

Inequality indices to monitor geographic differences in incidence, mortality and fatality rates over time during the COVID-19 pandemic
Cited by: 4
Author(s): Kirsi Manz, Ulrich Mansmann
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1008466

Paralog buffering contributes to the variable essentiality of genes in cancer cell lines
Cited by: 59
Author(s): Barbara De Kegel, Colm J. Ryan
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1009734

Recovery from heat shock requires the microRNA pathway in Caenorhabditis elegans
Cited by: 10
Author(s): Delaney C Pagliuso, Devavrat M Bodas, Amy E. Pasquinelli
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0237277

Causal graph analysis of COVID-19 observational data in German districts reveals effects of determining factors on reported case numbers
Cited by: 14
Author(s): Edgar Steiger, Tobias Mussgnug, Lars Eric Kroll
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009097

Diversified regulation of circadian clock gene expression following whole genome duplication
Cited by: 9
Author(s): Alexander C. West, Marianne Iversen, Even H. Jørgensen, Simen Rød Sandve, David G. Hazlerigg, Shona H. Wood
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pntd.0008056

Machine learning and dengue forecasting: Comparing random forests and artificial neural networks for predicting dengue burden at national and sub-national scales in Colombia
Cited by: 33
Author(s): Naizhuo Zhao, Katia Charland, Mabel Carabalí, Elaine O. Nsoesie, Mathieu Maheu‐Giroux, Erin E. Rees, Mengru Yuan, César García Balaguera, Gloria Jaramillo Ramirez, Kate Zinszer
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0251130

Aerial survey estimates of polar bears and their tracks in the Chukchi Sea
Cited by: 9
Author(s): Paul B. Conn, Vladimir I. Chernook, Erin E. Moreland, Irina S. Trukhanova, Eric V. Regehr, A. N. Vasiliev, Ryan R. Wilson, Stanislav Belikov, Peter L. Boveng
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009390

Zebrafish Ski7 tunes RNA levels during the oocyte-to-embryo transition
Cited by: 11
Author(s): Luis Enrique Cabrera-Quio, Alexander Schleiffer, Karl Mechtler, Andrea Pauli
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0232453

Characterizing changes in soil microbiome abundance and diversity due to different cover crop techniques
Cited by: 13
Author(s): Charlotte H. Wang, Linda Wu, Zengyan Wang, Magdy S. Alabady, Daniel Parson, Zainab Molumo, Sarah C. Fankhauser
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.ppat.1008401

Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
Cited by: 35
Author(s): Jérémie Bazin, Kadarkaraisamy Mariappan, Yunhe Jiang, Thomas Blein, Ronny Völz, Martín Crespi, Heribert Hirt
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0224342

Estimating relative CWD susceptibility and disease progression in farmed white-tailed deer with rare PRNP alleles
Cited by: 24
Author(s): Nicholas J. Haley, Kahla Merrett, Amy Stein, Dennis A. Simpson, Andrew Carlson, Gordon Mitchell, Antanas Staskevicius, Tracy A. Nichols, Aaron Lehmkuhl, Bruce V. Thomsen
Software Mentions: 4
Published: almost 5 years ago