10.1371/journal.pcbi.1007728

Buffering and total calcium levels determine the presence of oscillatory regimes in cardiac cells
Cited by: 2
Author(s): Miquel Marchena, Blas Echebarria, Yohannes Shiferaw, Enrique Alvarez-Lacalle
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1009257

Label-free imaging and classification of live P. falciparum enables high performance parasitemia quantification without fixation or staining
Cited by: 8
Author(s): Paul Lebel, Rebekah Dial, Venkata Naga Pranathi Vemuri, Valentina E. Garcia, Joseph L. DeRisi, Rafael Gómez-Sjöberg
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008948

Small subpopulations of β-cells do not drive islet oscillatory [Ca2+] dynamics via gap junction communication
Cited by: 19
Author(s): JaeAnn M. Dwulet, Jennifer K. Briggs, Richard K.P. Benninger
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1009025

Expectancy-based rhythmic entrainment as continuous Bayesian inference
Cited by: 16
Author(s): Jonathan Cannon
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007489

Path integration in large-scale space and with novel geometries: Comparing vector addition and encoding-error models
Cited by: 16
Author(s): Sevan K. Harootonian, Robert Wilson, Lukáš Hejtmánek, Eli M. Ziskin, Arne D. Ekstrom
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009001

Estimation of country-level incidence of early-onset invasive Group B Streptococcus disease in infants using Bayesian methods
Cited by: 2
Author(s): Bronner P. Gonçalves, Simon R. Procter, Samuel Clifford, Artemis Koukounari, Proma Paul, Arie Y. Lewin, Mark Jit, Joy E Lawn
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008704

A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli
Cited by: 8
Author(s): Alexandre Oliveira, Joana Lúcia Lima Correia Rodrigues, Eugénio C. Ferreira, L. R. Rodrigues, Óscar Dias
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008758

Selection of stimulus parameters for enhancing slow wave sleep events with a neural-field theory thalamocortical model
Cited by: 1
Author(s): Fidel Torres, Patricio Orio, María-José Escobar
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008435

Inferring a network from dynamical signals at its nodes
Cited by: 7
Author(s): Corey Weistuch, Luca Agozzino, Lilianne R. Mujica‐Parodi, Ken A. Dill
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008272

Visually guided homing of bumblebees in ambiguous situations: A behavioural and modelling study
Cited by: 7
Author(s): Charlotte Doussot, O. Bertrand, Martin Egelhaaf
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008850

Novel anti-malarial drug strategies to prevent artemisinin partner drug resistance: A model-based analysis
Cited by: 6
Author(s): Amber Kunkel, Michael White, Patrice Piola
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007457

A mechanistic, stigmergy model of territory formation in solitary animals: Territorial behavior can dampen disease prevalence but increase persistence
Cited by: 8
Author(s): Lauren A. White, Sue VandeWoude, Meggan E. Craft
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007969

Emergence of cooperative bistability and robustness of gene regulatory networks
Cited by: 20
Author(s): Shintaro Nagata, Macoto Kikuchi
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007614

Stimulus-choice (mis)alignment in primate area MT
Cited by: 20
Author(s): Yuan Zhao, Jacob L. Yates, Aaron J. Levi, Alexander C. Huk, Il Park
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007707

Tracking progress towards malaria elimination in China: Individual-level estimates of transmission and its spatiotemporal variation using a diffusion network approach
Cited by: 13
Author(s): Isobel Routledge, Shengjie Lai, Katherine E. Battle, Azra C Ghani, Manuel Gomez-Rodriguez, Kyle Gustafson, Swapnil Mishra, H. Juliette T. Unwin, Joshua L. Proctor, Andrew J. Tatem, Zhongjie Li, Samir Bhatt
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009092

Multitask learning over shared subspaces
Cited by: 1
Author(s): Nicholas Menghi, Kemal Kacar, Will D. Penny
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008798

Accurate contact-based modelling of repeat proteins predicts the structure of new repeats protein families
Cited by: 6
Author(s): Claudio Bassot, Arne Elofsson
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007805

Learning action-oriented models through active inference
Cited by: 67
Author(s): Alexander Tschantz, Anil K. Seth, Christopher L. Buckley
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007670

Long-range correlation in protein dynamics: Confirmation by structural data and normal mode analysis
Cited by: 26
Author(s): Qianying Tang, Kunihiko Kaneko
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008388

A model-based evaluation of the efficacy of COVID-19 social distancing, testing and hospital triage policies
Cited by: 22
Author(s): Audrey McCombs, Claus Kadelka
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008162

Aberrant computational mechanisms of social learning and decision-making in schizophrenia and borderline personality disorder
Cited by: 29
Author(s): Lara Henco, Andreea O. Diaconescu, Juha M. Lahnakoski, Marie‐Luise Brandi, Sophia Hörmann, Johannes M. Hennings, Alkomiet Hasan, Irina Papazova, Wolfgang Strube, Dimitris Bolis, Leonhard Schilbach, Christoph Mathys
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007948

Bayesian parameter estimation for automatic annotation of gene functions using observational data and phylogenetic trees
Cited by: 1
Author(s): George G. Vega Yon, Duncan C. Thomas, John L. Morrison, Huaiyu Mi, Paul D. Thomas, Paul Marjoram
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008920

Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions
Cited by: 24
Author(s): Grímur Hjörleifsson Eldjárn, Andrew Ramsay, Justin J. J. van der Hooft, Katherine R. Duncan, Sylvia Soldatou, Juho Rousu, Rónán Daly, Joe Wandy, Simon Rogers
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007732

PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
Cited by: 91
Author(s): Guillaume Gautreau, Adelme Bazin, Mathieu Gachet, Rémi Planel, Laura Burlot, Mathieu Dubois, Perrin Amandine, Claudine Médigue, Alexandra Calteau, Stéphane Cruveiller, Catherine Matias, Christophe Ambroise, Eduardo P. C. Rocha, David Vallenet
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008617

Aggregative cycles evolve as a solution to conflicts in social investment
Cited by: 11
Author(s): Leonardo Miele, Silvia De Monte
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008156

Modeling microbial metabolic trade-offs in a chemostat
Cited by: 28
Author(s): Zhiyuan Li, Bo Liu, Sophia Hsin-Jung Li, C. H. King, Zemer Gitai, Ned S. Wingreen
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007589

Fine-scale family structure shapes influenza transmission risk in households: Insights from primary schools in Matsumoto city, 2014/15
Cited by: 33
Author(s): Akira Endo, Mitsuo Uchida, Adam J. Kucharski, Sebastian Funk
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008401

Inferring evolutionary pathways and directed genotype networks of foodborne pathogens
Cited by: 3
Author(s): Oliver M. Cliff, Natalia McLean, Vitali Sintchenko, Kristopher M. Fair, Tania C. Sorrell, Stuart Kauffman, Mikhail Prokopenko
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008108

Generalized estimating equation modeling on correlated microbiome sequencing data with longitudinal measures
Cited by: 7
Author(s): Bo Chen, Wei Xu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008342

A recurrent neural network framework for flexible and adaptive decision making based on sequence learning
Cited by: 8
Author(s): Zhewei Zhang, Huzi Cheng, Tianming Yang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007733

Network mechanisms and dysfunction within an integrated computational model of progression through mitosis in the human cell cycle
Cited by: 6
Author(s): Scott S. Terhune, Y Jung, Katie M. Cataldo, Ranjan K. Dash
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008532

Quantifying epidemiological drivers of gambiense human African Trypanosomiasis across the Democratic Republic of Congo
Cited by: 21
Author(s): R. E. Crump, Ching‐I Huang, Edward Knock, Simon E. F. Spencer, Paul E. Brown, Erick Mwamba Miaka, Chansy Shampa, Matthew James Keeling, Kat S. Rock
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1009003

Effects of subclinical depression on prefrontal–striatal model-based and model-free learning
Cited by: 5
Author(s): Suyeon Heo, Yoondo Sung, Sang Wan Lee
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008891

A novel yeast hybrid modeling framework integrating Boolean and enzyme-constrained networks enables exploration of the interplay between signaling and metabolism
Cited by: 14
Author(s): Linnea Österberg, Iván Domenzain, Julia Münch, Jens Nielsen, Stefan Hohmann, Marija Cvijović
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008068

Neural surprise in somatosensory Bayesian learning
Cited by: 21
Author(s): Sam Gijsen, Miro Grundei, R. T. Lange, Dirk Ostwald, Felix Blankenburg
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1009173

Mechanical feedback and robustness of apical constrictions in Drosophila embryo ventral furrow formation
Cited by: 5
Author(s): Michael Holcomb, Guo Jie Jason Gao, Mahsa Servati, Dylan Schneider, Presley K. McNeely, Jeffrey H. Thomas, Jerzy Bławzdziewicz
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008296

Mutation bias interacts with composition bias to influence adaptive evolution
Cited by: 20
Author(s): Alejandro V. Cano, Joshua L. Payne
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007194

Computational and robotic modeling reveal parsimonious combinations of interactions between individuals in schooling fish
Cited by: 26
Author(s): Lei Liu, Ramón Escobedo, Clément Sire, Guy Théraulaz
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009367

Modelling to explore the potential impact of asymptomatic human infections on transmission and dynamics of African sleeping sickness
Cited by: 9
Author(s): Maryam Aliee, Matthew James Keeling, Kat S. Rock
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1007823

Computational models to improve surveillance for cassava brown streak disease and minimize yield loss
Cited by: 10
Author(s): Alex C. Ferris, Richard O. J. H. Stutt, David Godding, Christopher A. Gilligan
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008700

Learning poly-synaptic paths with traveling waves
Cited by: 2
Author(s): Yoshiki Ito, Taro Toyoizumi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007726

Interspike intervals within retinal spike bursts combinatorially encode multiple stimulus features
Cited by: 3
Author(s): Takeaki Ishii, Toshihiko Hosoya
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008323

Validation of DBFOLD: An efficient algorithm for computing folding pathways of complex proteins
Cited by: 8
Author(s): Amir Bitran, William M. Jacobs, E. I. Shakhnovich
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007898

In silico discovery and biological validation of ligands of FAD synthase, a promising new antimicrobial target
Cited by: 10
Author(s): Isaías Lans, Ernesto Anoz-Carbonell, Karen Palacio-Rodríguez, José A. Aínsa, Milagros Medina, Pilar Cossio
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008425

Phenotypes to remember: Evolutionary developmental memory capacity and robustness
Cited by: 9
Author(s): András Szilágyi, Péter Szabó, Mauro Santos, Eörs Szathmáry
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008487

MetGEMs Toolbox: Metagenome-scale models as integrative toolbox for uncovering metabolic functions and routes of human gut microbiome
Cited by: 7
Author(s): Preecha Patumcharoenpol, Massalin Nakphaichit, Gianni Panagiotou, Anchalee Senavonge, Narissara Suratannon, Wanwipa Vongsangnak
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007920

Order matters: How covert value updating during sequential option sampling shapes economic preference
Cited by: 2
Author(s): Chen Hu, Philippe Domenech, Mathias Pessiglione
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007870

Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution
Cited by: 70
Author(s): Andreas Haahr Larsen, Yong Wang, Sandro Bottaro, Sergei Grudinin, Lise Arleth, Kresten Lindorff‐Larsen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009080

Modeling the impact of single-cell stochasticity and size control on the population growth rate in asymmetrically dividing cells
Cited by: 2
Author(s): Felix Barber, Jiseon Min, Andrew W. Murray, Ariel Amir
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1007624

Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties
Cited by: 18
Author(s): Flavia Corsi, Richard Lavery, Élodie Laine, Alessandra Carbone
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008588

Deriving fine-scale models of human mobility from aggregated origin-destination flow data
Cited by: 3
Author(s): Constanze Ciavarella, Neil M. Ferguson
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008673

Efficient and robust coding in heterogeneous recurrent networks
Cited by: 22
Author(s): Fleur Zeldenrust, Boris Gutkin, Sophie Denève
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007265

Dimensional reduction of emergent spatiotemporal cortical dynamics via a maximum entropy moment closure
Cited by: 3
Author(s): Yuxiu Shao, Jiwei Zhang, Louis Tao
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009049

Effect of cellular rearrangement time delays on the rheology of vertex models for confluent tissues
Cited by: 16
Author(s): Gonca Erdemci-Tandogan, M. Lisa Manning
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008017

Capsule networks as recurrent models of grouping and segmentation
Cited by: 34
Author(s): Adrien Doerig, Lynn Schmittwilken, Bilge Sayim, Mauro Manassi, Michael H. Herzog
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007573

Robustness and parameter geography in post-translational modification systems
Cited by: 15
Author(s): Kee-Myoung Nam, Benjamin M. Gyori, Silviana V. Amethyst, Daniel J. Bates, Jeremy Gunawardena
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008480

A functional theory of bistable perception based on dynamical circular inference
Cited by: 8
Author(s): Pantelis Leptourgos, Vincent Bouttier, Renaud Jardri, Sophie Denève
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008604

Post-lockdown abatement of COVID-19 by fast periodic switching
Cited by: 44
Author(s): Michelangelo Bin, Peter Y. K. Cheung, Emanuele Crisostomi, Pietro Ferraro, Hugo Lhachemi, Roderick Murray-Smith, Connor Myant, Thomas Parisini, Robert Shorten, Sebastian Stein, Lewi Stone
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007691

Modeling binary and graded cone cell fate patterning in the mouse retina
Cited by: 10
Author(s): Kiara C. Eldred, Cameron M. Avelis, Robert J. Johnston, Elijah Roberts
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009188

A model explaining mRNA level fluctuations based on activity demands and RNA age
Cited by: 3
Author(s): Zhongneng Xu, Shuichi Asakawa
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008714

Using deep neural networks to evaluate object vision tasks in rats
Cited by: 9
Author(s): Kasper Vinken, Hans Op de Beeck
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008130

Overlaid positive and negative feedback loops shape dynamical properties of PhoPQ two-component system
Cited by: 9
Author(s): Satyajit D. Rao, Oleg A. Igoshin
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007550

Avoidance of non-localizable obstacles in echolocating bats: A robotic model
Cited by: 14
Author(s): Carl Bou Mansour, Elijah Koreman, Jan Steckel, Herbert Peremans, Dieter Vanderelst
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007405

Structural and molecular insight into the pH-induced low-permeability of the voltage-gated potassium channel Kv1.2 through dewetting of the water cavity
Cited by: 4
Author(s): Juhwan Lee, Mi Sun Kang, Sang‐Yeol Kim, Iksoo Chang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008317

Reward-predictive representations generalize across tasks in reinforcement learning
Cited by: 18
Author(s): Lucas Lehnert, Michael L. Littman, Michael J. Frank
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007717

An in-silico human cell model reveals the influence of spatial organization on RNA splicing
Cited by: 15
Author(s): Zhaleh Ghaemi, J.R. Peterson, Martin Gruebele, Zaida Luthey‐Schulten
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007300

A biophysical model of striatal microcircuits suggests gamma and beta oscillations interleaved at delta/theta frequencies mediate periodicity in motor control
Cited by: 15
Author(s): Julia Chartove, Michelle M. McCarthy, Benjamin Pittman-Polletta, Nancy Kopell
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008353

Modelling locust foraging: How and why food affects group formation
Cited by: 8
Author(s): Fillipe Georgiou, Jérôme Buhl, J. E. F. Green, Bishnu P. Lamichhane, Ngamta Thamwattana
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1009110

Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism
Cited by: 7
Author(s): Leo Zhu, William Pei, Ines Thiele, Radhakrishnan Mahadevan
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008776

Age-structured non-pharmaceutical interventions for optimal control of COVID-19 epidemic
Cited by: 39
Author(s): Quentin Richard, Samuel Alizon, Marc Choisy, Mircea T. Sofonea, Ramsès Djidjou‐Demasse
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008965

Maximally efficient prediction in the early fly visual system may support evasive flight maneuvers
Cited by: 8
Author(s): Siwei Wang, Idan Segev, Alexander Borst, Stéphanie Palmer
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007997

Stochastic ordering of complexoform protein assembly by genetic circuits
Cited by: 1
Author(s): Mikkel H. Jensen, Eliza J. Morris, Hai B. Tran, Michael A. Nash, Cheemeng Tan
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007522

DRAMS: A tool to detect and re-align mixed-up samples for integrative studies of multi-omics data
Cited by: 8
Author(s): Yi Jiang, Gina Giase, Kay Grennan, Annie W. Shieh, Yan Xia, Lide Han, Quan Wang, Qiang Wei, Rui Chen, Sihan Liu, Kevin P. White, Chao Chen, Bingshan Li, Chunyu Liu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008602

Directed attenuation to enhance vaccine immunity
Cited by: 3
Author(s): Rustom Antia, Hasan Ahmed, James J. Bull
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008357

Rapid prediction of crucial hotspot interactions for icosahedral viral capsid self-assembly by energy landscape atlasing validated by mutagenesis
Cited by: 2
Author(s): Ruijin Wu, Rahul Prabhu, Aysegul Ozkan, Meera Sitharam
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008135

Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence
Cited by: 29
Author(s): Chen Liao, Tong Wang, Sergei Maslov, João B. Xavier
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007897

Immunization strategies in networks with missing data
Cited by: 18
Author(s): Samuel F. Rosenblatt, Jeffrey A. Smith, G. Robin Gauthier, Laurent Hébert‐Dufresne
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007767

The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth
Cited by: 27
Author(s): Juami H. M. van Gils, Erik van Dijk, Alessia Peduzzo, Alexander Hofmann, Nicola Vettore, Marie P. Schützmann, Georg Groth, Halima Mouhib, Daniel E. Otzen, Alexander K. Buell, Sanne Abeln
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007529

Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs
Cited by: 27
Author(s): Benjamin Allen, Christine Sample, Robert Jencks, James Fred Withers, Patricia Steinhagen, Lori Brizuela, Joshua Kolodny, Darren Parke, Gábor Lippner, Yulia Dementieva
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007705

A mathematical model describing the localization and spread of influenza A virus infection within the human respiratory tract
Cited by: 43
Author(s): Christian Quirouette, Nada P. Younis, Micaela B. Reddy, C. Beauchemin
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008783

Differential contributions of synaptic and intrinsic inhibitory currents to speech segmentation via flexible phase-locking in neural oscillators
Cited by: 8
Author(s): Benjamin Pittman-Polletta, Yangyang Wang, David A. Stanley, Charles E. Schroeder, Miles A. Whittington, Nancy Kopell
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1009217

Ergodicity-breaking reveals time optimal decision making in humans
Cited by: 3
Author(s): D. Meder, Finn Rabe, Tobias Morville, Kristoffer Hougaard Madsen, Magnus T. Koudahl, Raymond J. Dolan, Hartwig R. Siebner
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1009307

Epigenetic instability may alter cell state transitions and anticancer drug resistance
Cited by: 6
Author(s): Anshul Saini, James M. Gallo
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008967

Antibody Watch: Text mining antibody specificity from the literature
Cited by: 2
Author(s): Chun‐Nan Hsu, Chia Hui Chang, Thamolwan Poopradubsil, Amanda Lo, Karen William, Ko‐Wei Lin, Anita Bandrowski, İbrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007662

Inferring a simple mechanism for alpha-blocking by fitting a neural population model to EEG spectra
Cited by: 10
Author(s): Agus Hartoyo, Peter J. Cadusch, David T. J. Liley, D. G. Hicks
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008828

Circadian rhythm shows potential for mRNA efficiency and self-organized division of labor in multinucleate cells
Cited by: 2
Author(s): Leif Zinn-Brooks, Marcus Roper
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1009103

Insights into substrate recognition and specificity for IgG by Endoglycosidase S2
Cited by: 5
Author(s): Asaminew H. Aytenfisu, Daniel Deredge, Erik H. Klontz, Jonathan J. Du, Eric J. Sundberg, Alexander D. MacKerell
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1007572

Two-variable nullcline analysis of ionic general equilibrium predicts calcium homeostasis in ventricular myocytes
Cited by: 2
Author(s): David Conesa, Blas Echebarria, Angelina Peñaranda, Inma Rodríguez Cantalapiedra, Yohannes Shiferaw, Enrique Alvarez-Lacalle
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1008726

Group testing as a strategy for COVID-19 epidemiological monitoring and community surveillance
Cited by: 26
Author(s): Vincent Brault, Bastien Mallein, Jean-François Rupprecht
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007566

Modeling time-varying brain networks with a self-tuning optimized Kalman filter
Cited by: 20
Author(s): David Pascucci, Maria Rubega, Gijs Plomp
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008051

Quorum sensing via dynamic cytokine signaling comprehensively explains divergent patterns of effector choice among helper T cells
Cited by: 11
Author(s): Edward C Schrom, Simon A. Levin, Andrea L. Graham
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1008103

Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking discrimination
Cited by: 36
Author(s): Ryan E. Pavlovicz, Hahnbeom Park, Frank DiMaio
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1007678

In silico investigation of the mechanisms underlying atrial fibrillation due to impaired Pitx2
Cited by: 20
Author(s): Jieyun Bai, Andy Lo, Patrick Gladding, Martin K. Stiles, Vadim V. Fedorov, Jichao Zhao
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1009190

An uncertainty-based model of the effects of fixation on choice
Cited by: 6
Author(s): Zhiwei Li, Wei Ji
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008943

Learning brain dynamics for decoding and predicting individual differences
Cited by: 3
Author(s): Joyneel Misra, Srinivas Govinda Surampudi, Manasij Venkatesh, Chirag Limbachia, Joseph F. JáJá, Luiz Pessoa
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008855

How does Sec63 affect the conformation of Sec61 in yeast?
Cited by: 11
Author(s): Pratiti Bhadra, Lalitha Yadhanapudi, Karin Römisch, Volkhard Helms
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008035

Data-driven contact structures: From homogeneous mixing to multilayer networks
Cited by: 23
Author(s): Alberto Aleta, Guilherme Ferraz de Arruda, Yamir Moreno
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1009185

Neuron tracing and quantitative analyses of dendritic architecture reveal symmetrical three-way-junctions and phenotypes of git-1 in C. elegans
Cited by: 1
Author(s): Omer Yuval, Yael Iosilevskii, Anna Meledin, Benjamin Podbilewicz, Tom Shemesh
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1007927

Measurable health effects associated with the daylight saving time shift
Cited by: 12
Author(s): Hanxin Zhang, Torsten Dahlén, Atif Ali Khan, Gustaf Edgren, Andrey Rzhetsky
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1007940

Learning gene networks underlying clinical phenotypes using SNP perturbation
Cited by: 0
Author(s): Calvin McCarter, Judie A. Howrylak, Seyoung Kim
Software Mentions: 1
Published: almost 6 years ago