10.1371/journal.pcbi.1007487

Atypical structural tendencies among low-complexity domains in the Protein Data Bank proteome
Cited by: 24
Author(s): Sean M. Cascarina, Mikaela R. Elder, Eric D. Ross
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pcbi.1007149

Changes-of-mind in the absence of new post-decision evidence
Cited by: 20
Author(s): Nadim A. A. Atiya, Arkady Zgonnikov, Denis O’Hora, Martin Schoemann, Stefan Scherbaum, KongFatt Wong‐Lin
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pcbi.1009008

A modular approach for modeling the cell cycle based on functional response curves
Cited by: 9
Author(s): Jolan De Boeck, Jan Rombouts, Lendert Gelens
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1007848

Mechanistic model of hormonal contraception
Cited by: 4
Author(s): Andrew A. Wright, Ghassan N. Fayad, James F. Selgrade, Mette S. Olufsen
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1009647

Tau, XMAP215/Msps and Eb1 co-operate interdependently to regulate microtubule polymerisation and bundle formation in axons
Cited by: 16
Author(s): Ines Hahn, André Voelzmann, Jill Parkin, Judith B. Fülle, Paula G. Slater, Laura Anne Lowery, Natalia Sánchez‐Soriano, Andreas Prokop
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1009297

Dis3L2 regulates cell proliferation and tissue growth through a conserved mechanism
Cited by: 12
Author(s): Benjamin P. Towler, Amy L. Pashler, Hope J. Haime, Katarzyna M. Przybyl, Sandra C. Viegas, Rute G. Matos, Simon Morley, Cecília M. Arraiano, Sarah F. Newbury
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1007918

Classifying sex and strain from mouse ultrasonic vocalizations using deep learning
Cited by: 32
Author(s): Aleksandr Ivanenko, Paul V. Watkins, Marcel A. J. van Gerven, Kurt Hammerschmidt, Bernhard Englitz
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1009404

Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates
Cited by: 8
Author(s): Pedro Andrade, Małgorzata Anna Gazda, Pedro M. Araújo, Sandra Afonso, Jacob Agerbo Rasmussen, C Marques, Ricardo J. Lopes, M. Thomas P. Gilbert, Miguel Carneiro
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1007992

Brain-optimized extraction of complex sound features that drive continuous auditory perception
Cited by: 12
Author(s): Julia Berezutskaya, Zachary V. Freudenburg, Umut Güçlü, Marcel A. J. van Gerven, Nick Ramsey
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1008977

Systematic identification of functional SNPs interrupting 3’UTR polyadenylation signals
Cited by: 21
Author(s): Eldad D. Shulman, Ran Elkon
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pcbi.1009244

Performance and scaling behavior of bioinformatic applications in virtualization environments to create awareness for the efficient use of compute resources
Cited by: 6
Author(s): Maximilian Hanussek, Felix Bartusch, Jens Krüger
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1009534

Novel EDGE encoding method enhances ability to identify genetic interactions
Cited by: 5
Author(s): Molly A. Hall, John R. Wallace, Anastasia Lucas, Yuki Bradford, Shefali S. Verma, Bertram Müller‐Myhsok, Kristin Passero, Jiayan Zhou, John McGuigan, Beibei Jiang, Sarah A. Pendergrass, Yanfei Zhang, Peggy L. Peissig, Murray H. Brilliant, Patrick Sleiman, Hákon Hákonarson, John B. Harley, Krzysztof Kiryluk, Kristel Van Steen, Jason H. Moore, Marylyn D. Ritchie
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1009383

A unified mechanism for innate and learned visual landmark guidance in the insect central complex
Cited by: 21
Author(s): Roman Goulard, Cornelia Buehlmann, Paul Graham, Barbara Webb
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pgen.1008901

A Drosophila model of Pontocerebellar Hypoplasia reveals a critical role for the RNA exosome in neurons
Cited by: 13
Author(s): Derrick J. Morton, Binta Jalloh, Lily Kim, Isaac Kremsky, Rishi J. Nair, Khuong B. Nguyen, J. Christopher Rounds, Maria C. Sterrett, Brianna E Brown, Thalia Le, Maya C. Karkare, Kathryn D. McGaughey, Shaoyi Sheng, Sara W. Leung, Milo B. Fasken, Kenneth H. Moberg, Anita H. Corbett
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1007686

Cortical ignition dynamics is tightly linked to the core organisation of the human connectome
Cited by: 12
Author(s): Samy Castro, Wael El-Deredy, Demian Battaglia, Patricio Orio
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1009072

Examining the dynamics of Epstein-Barr virus shedding in the tonsils and the impact of HIV-1 coinfection on daily saliva viral loads
Cited by: 8
Author(s): Catherine Byrne, Christine Johnston, Jackson Orem, Fred Okuku, Meei‐Li Huang, Habibur Rahman, Anna Wald, Lawrence Corey, Joshua T Schiffer, Corey Casper, Daniel Coombs, Soren Gantt
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1008680

Dynamics of chromosomal target search by a membrane-integrated one-component receptor
Cited by: 6
Author(s): Linda Martini, Sophie Brameyer, Elisabeth Hoyer, Kirsten Jung, Ulrich Gerland
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pgen.1008270

Drosophila insulin-like peptide 2 mediates dietary regulation of sleep intensity
Cited by: 38
Author(s): Elizabeth Brown, Kreesha D. Shah, Richard Faville, Benjamin Kottler, Alex C. Keene
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1008961

Modeling historic incidence trends implies early field cancerization in esophageal squamous cell carcinoma
Cited by: 2
Author(s): E. Georg Luebeck, Thomas L. Vaughan, Kit Curtius, William D. Hazelton
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1008383

Arioc: High-concurrency short-read alignment on multiple GPUs
Cited by: 9
Author(s): Richard Wilton, Alexander S. Szalay
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pgen.1008694

WHIMP links the actin nucleation machinery to Src-family kinase signaling during protrusion and motility
Cited by: 7
Author(s): Shail Kabrawala, Margaret D. Zimmer, Kenneth Campellone
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1007981

The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies
Cited by: 138
Author(s): Aleksey V. Zimin, Steven L. Salzberg
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1009153

Multivariable G-E interplay in the prediction of educational achievement
Cited by: 26
Author(s): Andrea G. Allegrini, Ville Karhunen, Jonathan R. I. Coleman, Saskia Selzam, Kaili Rimfeld, Sophie von Stumm, Jean‐Baptiste Pingault, Robert Plomin
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1008546

The complexity of protein interactions unravelled from structural disorder
Cited by: 14
Author(s): Beatriz Seoane, Alessandra Carbone
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0244699

Proteomic identification of the UDP-GlcNAc: PI α1–6 GlcNAc-transferase subunits of the glycosylphosphatidylinositol biosynthetic pathway of Trypanosoma brucei
Cited by: 3
Author(s): Zhe Ji, Michele Tinti, Michael A. J. Ferguson
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0244748

Mental health and psychosocial support strategies in highly contagious emerging disease outbreaks of substantial public concern: A systematic scoping review
Cited by: 24
Author(s): Angela Kunzler, Jutta Stoffers‐Winterling, Marlene Stoll, Alexander Lucas Mancini, Sophie Lehmann, Manpreet Blessin, Donya Gilan, Isabella Helmreich, Frank T. Hufert, Klaus Lieb
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1007965

Resilience of three-dimensional sinusoidal networks in liver tissue
Cited by: 10
Author(s): Jens Karschau, André Scholich, Jonathan Wise, Hernán Morales‐Navarrete, Yannis Kalaidzidis, Marino Zerial, Benjamin M. Friedrich
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0236816

Markers of protein-energy wasting and physical performance in haemodialysis patients: A cross-sectional study
Cited by: 6
Author(s): Karsten Vanden Wyngaert, Bert Celie, Patrick Calders, Sunny Eloot, Els Holvoet, Wim Van Biesen, Amaryllis H. Van Craenenbroeck
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0219805

Identifying maintenance hosts for infection with Dichelobacter nodosus in free-ranging wild ruminants in Switzerland: A prevalence study
Cited by: 2
Author(s): Gaia Moore‐Jones, Flurin Ardüser, Salome Dürr, Stefanie Gobeli Brawand, Adrian Steiner, Patrik Zanolari, Marie-Pierre Ryser-Degiorgis
Software Mentions: 2
Published: almost 7 years ago

10.5195/ijt.2018.6259

Script Training Using Telepractice with Two Adults With Chronic Non-fluent Aphasia
Cited by: 13
Author(s): Naomi C. Rhodes, Emi Isaki
Software Mentions: 2
Published: almost 8 years ago

10.1186/1745-6215-14-386

A randomised trial of adaptive pacing therapy, cognitive behaviour therapy, graded exercise, and specialist medical care for chronic fatigue syndrome (PACE): statistical analysis plan
Cited by: 19
Author(s): Rebecca Walwyn, Laura Potts, Paul McCrone, Anthony L. Johnson, Julia DeCesare, Hannah Baber, Kimberley Goldsmith, Michael Sharpe, Trudie Chalder, Peter D White
Software Mentions: 2
Published: almost 14 years ago

10.7554/eLife.67336

Contingency and chance erase necessity in the experimental evolution of ancestral proteins
Cited by: 24
Author(s): Victoria Cochran Xie, Jinyue Pu, Brian P. H. Metzger, Joseph W. Thornton, Bryan C. Dickinson
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1009940

PCV2 targets cGAS to inhibit type I interferon induction to promote other DNA virus infection
Cited by: 28
Author(s): Zhenyu Wang, Jing Chen, Xingchen Wu, Dan Ma, Xiaohua Zhang, Ruizhen Li, Cong Han, Haixin Liu, Xiangrui Yin, Qian Du, Dewen Tong, Yong Huang
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0252238

Excess mortality by specific causes of deaths in the city of São Paulo, Brazil, during the COVID-19 pandemic
Cited by: 15
Author(s): Gisele Aparecida Fernandes, Antônio Paulo Nassar, Gulnar Azevedo e Silva, Diego Feriani, Ivan Leonardo Avelino França e Silva, Pedro Caruso, María Paula Curado
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1009874

Intracellular Staphylococcus aureus employs the cysteine protease staphopain A to induce host cell death in epithelial cells
Cited by: 16
Author(s): Kathrin Stelzner, Aziza Boyny, Tobias Hertlein, Aneta Sroka, Adriana Moldovan, Kerstin Paprotka, David Komla Kessie, Helene Mehling, Jan Potempa, Knut Ohlsen, Martin Fraunholz, Thomas Rudel
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.ppat.1009622

Phase separation of a plant virus movement protein and cellular factors support virus-host interactions
Cited by: 14
Author(s): Shelby L. Brown, Dana J. Garrison, Jared May
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.ppat.1009849

Acute SARS-CoV-2 infections harbor limited within-host diversity and transmit via tight transmission bottlenecks
Cited by: 65
Author(s): Katarina M. Braun, Gage K. Moreno, Cassia Wagner, Molly A. Accola, William M. Rehrauer, David Baker, Katia Koelle, David H. O’Connor, Trevor Bedford, Thomas C. Friedrich, Louise H. Moncla
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0228546

Shelter in Smoleń III – A unique example of stratified Holocene clastic cave sediments in Central Europe, a lithostratigraphic stratotype and a record of regional paleoecology
Cited by: 6
Author(s): Maciej T. Krajcarz, Marcin Szymanek, Magdalena Krajcarz, Andrea Pereswiet-Soltan, Witold Paweł Alexandrowicz, Magdalena Sudoł-Procyk
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.ppat.1009802

Modern Acinetobacter baumannii clinical isolates replicate inside spacious vacuoles and egress from macrophages
Cited by: 17
Author(s): Gabriela Sycz, Gisela Di Venanzio, Jesús S. Distel, Mariana G. Sartorio, Nguyen-Hung Le, Nichollas E. Scott, Wandy L. Beatty, Mario F. Feldman
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0224858

Genetic susceptibility to angiotensin-converting enzyme-inhibitor induced angioedema: A systematic review and evaluation of methodological approaches
Cited by: 8
Author(s): Haivin Aziz Ali, Anne Fog Lomholt, Seyed Hamidreza Mahmoudpour, Thorbjørn Hermanrud, Anette Bygum, Christian von Buchwald, Marianne Antonius Jakobsen, Eva Rye Rasmussen
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.ppat.1008390

Human cytomegalovirus long noncoding RNA4.9 regulates viral DNA replication
Cited by: 29
Author(s): Julie Tai-Schmiedel, Sharon Karniely, Betty Lau, Adi Ezra, Erez Eliyahu, Aharon Nachshon, Karen Kerr, Nicolás M. Suárez, Michal Schwartz, Andrew J. Davison, Noam Stern-Ginossar
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1008150

Computer-guided binding mode identification and affinity improvement of an LRR protein binder without structure determination
Cited by: 4
Author(s): Yoonjoo Choi, Sukyo Jeong, Jungmin Choi, Christian Ndong, Karl E. Griswold, Chris Bailey‐Kellogg, Kwang Ho Kim
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0231568

‘In search of lost time’: Identifying the causative role of cumulative competition load and competition time-loss in professional tennis using a structural nested mean model
Cited by: 1
Author(s): Stephanie Kovalchik
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1008409

Characterizing Emerging Canine H3 Influenza Viruses
Cited by: 28
Author(s): Luis Martínez-Sobrido, Pilar Blanco Lobo, Laura Rodríguez, Theresa Fitzgerald, Hanyuan Zhang, Phuong Nguyen-Contant, Christopher Anderson, Jeanne Holden‐Wiltse, Sanjukta Bandyopadhyay, Aitor Nogales, Marta L. DeDiego, Brian R. Wasik, Benjamin L. Miller, Carole Henry, Patrick C. Wilson, Mark Y. Sangster, John J. Treanor, David J. Topham, Lauren Byrd-Leotis, David A. Steinhauer, Richard D. Cummings, Jasmina M. Luczo, S. Mark Tompkins, Kaori Sakamoto, Cheryl Jones, John Steel, Anice C. Lowen, Shamika Danzy, Hui Tao, Ashley L. Fink, Sabra L. Klein, Nicholas Wohlgemuth, Katherine Fenstermacher, Farah El Najjar, Andrew Pekosz, Lauren Sauer, Mitra Lewis, Kathryn Shaw-Saliba, Richard E. Rothman, Zhen-Ying Liu, Kuan-Fu Chen, Colin R. Parrish, Ian E. H. Voorhees, Yoshihiro Kawaoka, Gabriele Neumann, Shiho Chiba, Shufang Fan, Masato Hatta, Huihui Kong, Gongxun Zhong, Guojun Wang, Melissa B. Uccellini, Adolfo Garcı́a-Sastre, Daniel R. Pérez, Lucas Ferreri, Sander Herfst, Mathilde Richard, Ron A. M. Fouchier, David F. Burke, David Pattinson, Derek J. Smith, Victoria A. Meliopoulos, Pamela Freiden, Brandi Livingston, Bridgett Sharp, Sean Cherry, Juan Carlos Dib, Guohua Yang, Charles J. Russell, Subrata Barman, Richard J. Webby, Scott Krauss, Angela Danner, Karlie Woodard, Malik Peiris, Ranawaka A.P.M. Perera, Michael Chi Wai Chan, Elena A. Govorkova, Bindumadhav M. Marathe, Philippe Noriel Q. Pascua, Gavin Smith, Yao-Tsun Li, Paul G. Thomas, Stacey Schultz‐Cherry
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1009796

Cytomegalovirus late transcription factor target sequence diversity orchestrates viral early to late transcription
Cited by: 12
Author(s): Ming Li, Qiaolin Hu, Geoffrey S Collins, Mrutyunjaya Parida, Christopher B. Ball, David H. Price, Jeffery L. Meier
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1008448

Variations in microbiota composition of laboratory mice influence Citrobacter rodentium infection via variable short-chain fatty acid production
Cited by: 58
Author(s): Lisa Osbelt, Sophie Thiemann, Nathiana Smit, Till Robin Lesker, Madita Schröter, Eric Galvez, Kerstin Schmidt‐Hohagen, Marina C. Pils, Sabrina Mühlen, Petra Dersch, Karsten Hiller, Dirk Schlüter, Meina Neumann‐Schaal, Till Strowig
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1008361

VCAM1/VLA4 interaction mediates Ly6Clow monocyte recruitment to the brain in a TNFR signaling dependent manner during fungal infection
Cited by: 21
Author(s): Dong Sun, Mingshun Zhang, Peng Sun, Gongguan Liu, Ashley B. Strickland, Yanli Chen, Yong Fu, Mohammed Yosri, Meiqing Shi
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1009329

Structural and functional studies of the first tripartite protein complex at the Trypanosoma brucei flagellar pocket collar
Cited by: 6
Author(s): Charlotte Isch, Paul Majneri, Nicolas Landrein, Yulia Pivovarova, Johannes Lesigang, Florian Lauruol, Derrick R. Robinson, Gang Dong, Mélanie Bonhivers
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1008317

Phosphoinositide-binding proteins mark, shape and functionally modulate highly-diverged endocytic compartments in the parasitic protist Giardia lamblia
Cited by: 11
Author(s): Lenka Černíková, Carmen Faso, Adrian Hehl
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1008383

Crystal structure of Mokola virus glycoprotein in its post-fusion conformation
Cited by: 15
Author(s): Laura Belot, Malika Ouldali, Stéphane Roche, Pierre Legrand, Yves Gaudin, Aurélie A. Albertini
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1008307

An activator of G protein-coupled receptor and MEK1/2-ERK1/2 signaling inhibits HIV-1 replication by altering viral RNA processing
Cited by: 7
Author(s): Raymond Wong, Ahalya Balachandran, Peter K. Cheung, Ran Cheng, Qun Pan, Peter Stoilov, P. Richard Harrigan, Benjamin J. Blencowe, Donald R. Branch, Alan Cochrane
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0232082

Patient reported postoperative pain with a smartphone application: A proof of concept
Cited by: 7
Author(s): Bram Thiel, Marc B. Godfried, Elise C van Huizen, Bart C. Mooijer, Bouke A de Boer, Rover A A M van Mierlo, Jim van Os, Bart F. Geerts, Cor J. Kalkman
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0252019

Dynamical SPQEIR model assesses the effectiveness of non-pharmaceutical interventions against COVID-19 epidemic outbreaks
Cited by: 8
Author(s): Daniele Proverbio, Françoise Kemp, Stefano Magni, Andreas Husch, Atte Aalto, Laurent Mombaerts, Alexander Skupin, Jorge Gonçalves, Jose Ameijeiras–Alonso, Christophe Ley
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1008296

Resolution of herpes simplex virus reactivation in vivo results in neuronal destruction
Cited by: 23
Author(s): Jessica Doll, Kasper Hoebe, Richard Thompson, Nancy Sawtell
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0247155

The effect of Iran’s health transformation plan on hospital performance: Kerman province
Cited by: 6
Author(s): Reza Goudarzi, Mohammad Tasavon Gholamhoseini, Somayeh Noori Hekmat, Setareh Yousefzadeh, Saeed Amini
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1009947

Androgen receptor transactivates KSHV noncoding RNA PAN to promote lytic replication–mediated oncogenesis: A mechanism of sex disparity in KS
Cited by: 2
Author(s): Mingyue Ding, Jinfeng Wu, Rui Sun, Lijun Yan, Lei Bai, Jiajian Shi, Feng Huang, Yuqi Zhang, Ke Lan, Xing Wang
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.ppat.1009941

TCA cycle remodeling drives proinflammatory signaling in humans with pulmonary tuberculosis
Cited by: 14
Author(s): Jeffrey M. Collins, Dean P. Jones, Ashish Sharma, Manoj Khadka, Ken H. Liu, Russell R. Kempker, Brendan Prideaux, Kristal Maner-Smith, Nestani Tukvadze, N Sarita Shah, James C.M. Brust, Rafick Pierre Sékaly, Neel R. Gandhi, Henry M. Blumberg, Eric A. Ortlund, Thomas R. Ziegler
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pgen.1008664

Rsph4a is essential for the triplet radial spoke head assembly of the mouse motile cilia
Cited by: 17
Author(s): Hiroshi Yoke, Hironori Ueno, Akihiro Narita, Takafumi Sakai, Kahoru Horiuchi, Chikako Shingyoji, Hiroshi Hamada, Kyosuke Shinohara
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1008103

Broad dengue neutralization in mosquitoes expressing an engineered antibody
Cited by: 65
Author(s): Anna Buchman, Stephanie Gamez, Ming Li, Igor Antoshechkin, Hsing-Han Li, Hsin-Wei Wang, Chun Hong Chen, Melissa J. Klein, Jean‐Bernard Duchemin, James E. Crowe, Prasad N. Paradkar, Omar S. Akbari
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0248948

Evaluating citizen science outreach: A case-study with The Peregrine Fund’s American Kestrel Partnership
Cited by: 2
Author(s): Sarah E. Schulwitz, Greg C. Hill, Vanessa Fry, Christopher J. W. McClure
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1009187

Shrinking Bouma’s window: How to model crowding in dense displays
Cited by: 10
Author(s): Alban Bornet, Adrien Doerig, Michael H. Herzog, Gregory Francis, Erik Van der Burg
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1008264

Chromatin maturation of the HIV-1 provirus in primary resting CD4+ T cells
Cited by: 15
Author(s): Birgitta Lindqvist, Sara Svensson Akusjärvi, Anders Sönnerborg, Marios Dimitriou, J. Peter Svensson
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pcbi.1007957

Learning receptive field properties of complex cells in V1
Cited by: 5
Author(s): Yanbo Lian, Ali Almasi, David B. Grayden, Tatiana Kameneva, Anthony N. Burkitt, Hamish Meffin
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1009736

Genes in human obesity loci are causal obesity genes in C. elegans
Cited by: 14
Author(s): Wenfan Ke, Jordan N. Reed, Clayton S.-C. Yang, Noel Higgason, Leila Rayyan, Carolina Wählby, Anne E. Carpenter, Mete Civelek, Eyleen J. O’Rourke
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0236932

Microbial communities can predict the ecological condition of headwater streams
Cited by: 7
Author(s): Robert H. Hilderbrand, Stephen R. Keller, Sarah M. Laperriere, Alyson E. Santoro, Jason F. Cessna, Regina Trott
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0250040

Autonomous learning of features for control: Experiments with embodied and situated agents
Cited by: 1
Author(s): Nicola Milano, Stefano Nolfi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1009252

A large-scale brain network mechanism for increased seizure propensity in Alzheimer’s disease
Cited by: 12
Author(s): Luke Tait, Marinho A. Lopes, George Stothart, John Baker, Nina Kazanina, Jiaxiang Zhang, Marc Goodfellow
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0245818

Spatial Congruence Analysis (SCAN): A method for detecting biogeographical patterns based on species range congruences
Cited by: 3
Author(s): Cassiano Augusto Ferreira Rodrigues Gatto, Mario Cohn‐Haft
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1008129

Organising the cell cycle in the absence of transcriptional control: Dynamic phosphorylation co-ordinates the Trypanosoma brucei cell cycle post-transcriptionally
Cited by: 31
Author(s): Corinna Benz, Michael D. Urbaniak
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pgen.1009703

Exploiting collider bias to apply two-sample summary data Mendelian randomization methods to one-sample individual level data
Cited by: 14
Author(s): Ciarrah Barry, Junxi Liu, Rebecca C Richmond, Martin K. Rutter, Debbie A. Lawlor, Frank Dudbridge, Jack Bowden
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1007825

Scale free topology as an effective feedback system
Cited by: 5
Author(s): Alexander Rivkind, Hallel Schreier, Naama Brenner, Omri Barak
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0227400

Self-selection of food ingredients and agricultural by-products by the house cricket, Acheta domesticus (Orthoptera: Gryllidae): A holistic approach to develop optimized diets
Cited by: 26
Author(s): Juan A. Morales-Ramos, M. Guadalupe Rojas, Aaron T. Dossey, Mark Berhow
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0220924

Epidemiological survey of serum titers from adults against various Gram-negative bacterial V-antigens
Cited by: 4
Author(s): Mao Kinoshita, Masaru Shimizu, Koichi Akiyama, Hideya Kato, Kiyoshi Moriyama, Teiji Sawa
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1009544

Light-dependent N-end rule-mediated disruption of protein function in Saccharomyces cerevisiae and Drosophila melanogaster
Cited by: 3
Author(s): Leslie M. Stevens, Goheun Kim, Theodora Koromila, John W. Steele, James McGehee, Angelike Stathopoulos, David Stein
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0245017

Ocean acidification decreases grazing pressure but alters morphological structure in a dominant coastal seaweed
Cited by: 16
Author(s): Alexandra Kinnby, Joel C. B. White, Gunilla B. Toth, Henrik Pavia
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1008109

Childhood immune imprinting to influenza A shapes birth year-specific risk during seasonal H1N1 and H3N2 epidemics
Cited by: 84
Author(s): Katelyn M. Gostic, Rebecca Bridge, Shane Brady, Cécile Viboud, Michael Worobey, James O. Lloyd‐Smith
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.ppat.1008446

Transcytosis subversion by M cell-to-enterocyte spread promotes Shigella flexneri and Listeria monocytogenes intracellular bacterial dissemination
Cited by: 24
Author(s): Camille Rey, Yuen-Yan Chang, Patricia Latour-Lambert, Hugo Varet, Caroline Proux, Rachel Legendre, Jean‐Yves Coppée, Jost Enninga
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0242375

Altered kinetics of circulating progenitor cells in cardiopulmonary bypass (CPB) associated vasoplegic patients: A pilot study
Cited by: 0
Author(s): Sanhita Nandi, Uma Rani Potunuru, Chandrani Kumari, Abel Arul Nathan, Jayashree Gopal, Gautam I. Menon, Rahul Siddharthan, Madhulika Dixit, Paul Ramesh Thangaraj
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0232072

Metabolic pathway alterations in microvascular endothelial cells in response to hypoxia
Cited by: 13
Author(s): Emily B. Cohen, Renee C. Geck, Alex Toker
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0246726

The NKG2D ligand ULBP4 is not expressed by human monocytes
Cited by: 0
Author(s): Mariya Lazarova, Young-Hoon Kim, Alexander Steinle
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0256253

Health and social behaviour through pandemic phases in Switzerland: Regional time-trends of the COVID-19 Social Monitor panel study
Cited by: 11
Author(s): André Moser, Viktor von Wyl, Marc Höglinger
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pgen.1008973

Leveraging expression from multiple tissues using sparse canonical correlation analysis and aggregate tests improves the power of transcriptome-wide association studies
Cited by: 32
Author(s): Helian Feng, Nicholas Mancuso, Alexander Gusev, Årindam Majumdar, Megan Major, Bogdan Paşaniuc, Peter Kraft
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1008890

Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor
Cited by: 13
Author(s): Valeria Velásquez-Zapata, James M. Elmore, Sagnik Banerjee, Karin S. Dorman, Roger P. Wise
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0238327

FLIMJ: An open-source ImageJ toolkit for fluorescence lifetime image data analysis
Cited by: 19
Author(s): Dasong Gao, Paul R. Barber, Jenu V. Chacko, Abdul Kader Sagar, Curtis Rueden, Aivar R Grislis, Mark Hiner, Kevin W. Eliceiri
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1008915

Leveraging eQTLs to identify individual-level tissue of interest for a complex trait
Cited by: 3
Author(s): Årindam Majumdar, Claudia Giambartolomei, Na Cai, Tanushree Haldar, Tommer Schwarz, Michael J. Gandal, Jonathan Flint, Bogdan Paşaniuc
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0245447

Value of endoscopic ultrasonography in the observation of the remnant pancreas after pancreatectomy
Cited by: 1
Author(s): Hirotsugu Maruyama, Keiji Hanada, Akinori Shimizu, Tomoyuki Minami, Naomiti Hirano, Fumiaki Hino, Tomoyuki Abe, Hodaka Amano, Yasuhiro Fujiwara
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0229962

Chronic microfiber exposure in adult Japanese medaka (Oryzias latipes)
Cited by: 38
Author(s): Lingling Hu, Melissa Chernick, Anna M. Lewis, P. Lee Ferguson, David E. Hinton
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0245635

Nicotinamide adenine dinucleotides are associated with distinct redox control of germination in Acer seeds with contrasting physiology
Cited by: 4
Author(s): Shirin Alipour, Karolina Bilska, Ewelina Stolarska, Natalia Wojciechowska, Ewa Marzena Kalemba
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0257999

Binocular treatment for amblyopia: A meta-analysis of randomized clinical trials
Cited by: 3
Author(s): Matilde Roda, Marco Pellegrini, Natalie di Geronimo, Aldo Vagge, Michela Fresina, Costantino Schiavi
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0241655

Contact-dependent traits in Pseudomonas syringae B728a
Cited by: 2
Author(s): Monica N. Hernandez, Steven E. Lindow
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0224577

Time series experimental design under one-shot sampling: The importance of condition diversity
Cited by: 2
Author(s): Xiaohan Kang, Bruce Hajek, Fen Wu, Yoshie Hanzawa
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0233043

Development and evaluation of habitat suitability models for nesting white-headed woodpecker (Dryobates albolarvatus) in burned forest
Cited by: 8
Author(s): Quresh S. Latif, Victoria A. Saab, Jonathan G. Dudley, Amy Markus, Kim Mellen‐McLean
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1009297

Probing T-cell response by sequence-based probabilistic modeling
Cited by: 8
Author(s): Barbara Bravi, Vinod P. Balachandran, Benjamin Greenbaum, Aleksandra M. Walczak, Thierry Mora, Rémi Monasson, Simona Cocco
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0232849

Sequence-structure-function relationships in class I MHC: A local frustration perspective
Cited by: 17
Author(s): Onur Serçinoğlu, Pemra Ozbek
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0227100

Development of a risk score for prediction of poor treatment outcomes among patients with multidrug-resistant tuberculosis
Cited by: 9
Author(s): Kefyalew Addis Alene, Kerri Viney, Darren J. Gray, Emma S. McBryde, Zuhui Xu, Archie C. A. Clements
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0248072

COVID-19 lockdowns and demographically-relevant Google Trends: A cross-national analysis
Cited by: 19
Author(s): Lawrence M. Berger, Giulia Ferrari, Marion Leturcq, Lidia Panico, Anne Solaz
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1007793

Dynamical network analysis reveals key microRNAs in progressive stages of lung cancer
Cited by: 4
Author(s): Chao Kong, Yu Yao, Z. Bing, Benqi Guo, Liang Huang, Zi‐Gang Huang, Ying Cheng Lai
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0224243

MARGO (Massively Automated Real-time GUI for Object-tracking), a platform for high-throughput ethology
Cited by: 23
Author(s): Zachary Werkhoven, Christian Rohrsen, Chuan Qin, Björn Brembs, Benjamin de Bivort
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0247580

Are political-opinion pollsters missing ambivalence: “I love Trump”… “I hate Trump”
Cited by: 0
Author(s): J. C. Camparo, Lorinda B. Camparo
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0236006

Isolation and diversity of sediment bacteria in the hypersaline aiding lake, China
Cited by: 18
Author(s): Tong-Wei Guan, Yijin Lin, Meng-Ying Ou, Ke-Bao Chen
Software Mentions: 2
Published: over 6 years ago