10.1371/journal.pone.0239149

Fertilizer profitability for smallholder maize farmers in Tanzania: A spatially-explicit ex ante analysis
Cited by: 5
Author(s): Sebastian Palmas, Jordan Chamberlin
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0240585

The mediating effects of public genomic knowledge in precision medicine implementation: A structural equation model approach
Cited by: 2
Author(s): John J O Mogaka, Moses John Chimbari
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0242354

Characterization of commercial poultry farms in Mexico: Towards a better understanding of biosecurity practices and antibiotic usage patterns
Cited by: 6
Author(s): Erika Ornelas-Eusebio, Gary Garcı́a-Espinosa, Karine Laroucau, Gina Zanella
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0240841

Risk screening methods for extreme heat: Implications for equity-oriented adaptation
Cited by: 3
Author(s): Lynée L. Turek-Hankins, Miyuki Hino, Katharine J. Mach
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pntd.0009357

Mark-release-recapture of male Aedes aegypti (Diptera: Culicidae): Use of rhodamine B to estimate movement, mating and population parameters in preparation for an incompatible male program
Cited by: 10
Author(s): Brendan J Trewin, Dan Pagendam, Brian J. Johnson, Chris Paton, Nigel Snoad, Scott A. Ritchie, Kyran M. Staunton, Bradley J. White, Sara N. Mitchell, Nigel W. Beebe
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pntd.0007743

Transcriptome of the parasitic flatworm Schistosoma mansoni during intra-mammalian development
Cited by: 19
Author(s): Arporn Wangwiwatsin, Anna V. Protasio, Shona Wilson, Christian Owusu, Nancy Holroyd, Mandy Sanders, Jacqueline A. Keane, Michael J. Doenhoff, Gabriel Rinaldi, Matthew Berriman
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0224214

Early succession on slag compared to urban soil: A slower recovery
Cited by: 4
Author(s): Heng-Xing Zou, Alison E. Anastasio, Catherine A. Pfister
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0229606

Postprandial transfer of colostral extracellular vesicles and their protein and miRNA cargo in neonatal calves
Cited by: 13
Author(s): Benedikt Kirchner, Dominik Buschmann, Vijay Paul, Michael W. Pfaffl
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0255803

In silico identification of natural product inhibitors against Octamer-binding transcription factor 4 (Oct4) to impede the mechanism of glioma stem cells
Cited by: 5
Author(s): Chirasmita Nayak, Sanjeev Kumar Singh
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0228503

Lumenal calcification and microvasculopathy in fetuin-A-deficient mice lead to multiple organ morbidity
Cited by: 33
Author(s): Marietta Herrmann, Anne Babler, Irina Moshkova, Felix Gremse, Fabian Kießling, Ulrike Kusebauch, Valentin Nelea, Rafael Kramann, Robert L. Moritz, Marc D. McKee, Willi Jahnen‐Dechent
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0227976

Relationships between psychosocial factors during pregnancy and preterm birth in Puerto Rico
Cited by: 14
Author(s): Stephanie M. Eick, John D. Meeker, Andrea Swartzendruber, Rafael E Rios-McConnell, Phil Brown, Carmen M. Vélez-Vega, Ye Shen, Akram N. Alshawabkeh, José F. Cordero, Kelly K. Ferguson
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0229873

Development of a methodology to make individual estimates of the precision of liquid chromatography-tandem mass spectrometry drug assay results for use in population pharmacokinetic modeling and the optimization of dosage regimens
Cited by: 7
Author(s): Gellért Balázs Karvaly, Michael Neely, K Kovács, István Vincze, Barna Vásárhelyi, Roger W. Jelliffe
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0236001

Germination response of diverse wild and landrace chile peppers (Capsicum spp.) under drought stress simulated with polyethylene glycol
Cited by: 2
Author(s): Vivian Bernau, Lev Jardón Barbolla, Leah K. McHale, Kristin L. Mercer
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0227667

Redefining transcriptional regulation of the APOE gene and its association with Alzheimer’s disease
Cited by: 25
Author(s): Eun-Gyung Lee, Jessica Tulloch, Sunny Chen, Lesley Leong, Aleen Saxton, Brian C. Kraemer, Martin Darvas, C. Dirk Keene, Andrew Shutes‐David, Kaitlin Todd, Steve Millard, Chang‐En Yu
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0236495

An unbiased template of the Drosophila brain and ventral nerve cord
Cited by: 57
Author(s): John A. Bogovic, Hideo Otsuna, Larissa Heinrich, Masayoshi Ito, Jennifer Jeter, Geoffrey W. Meissner, Aljoscha Nern, Jennifer Colonell, Oz Malkesman, Kei Ito, Stephan Saalfeld
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pgen.1009409

Widespread misregulation of inter-species hybrid transcriptomes due to sex-specific and sex-chromosome regulatory evolution
Cited by: 24
Author(s): Santiago Sánchez‐Ramírez, Jörg G Weiss, Cristel G. Thomas, Asher D. Cutter
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0238057

First field estimation of greenhouse gas release from European soil-dwelling Scarabaeidae larvae targeting the genus Melolontha
Cited by: 2
Author(s): Carolyn-Monika Görres, Claudia Kammann
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1009392

Genome-wide association study of resistance to Mycobacterium tuberculosis infection identifies a locus at 10q26.2 in three distinct populations
Cited by: 14
Author(s): Jocelyn Quistrebert, Marianna Orlova, Gaspard Kerner, Le Thi Ton, Nguyễn Trong Luong, Nguyễn Thanh Danh, Quentin B. Vincent, Fabienne Jabot‐Hanin, Yoann Seeleuthner, Jacinta Bustamante, Stéphanie Boisson‐Dupuis, Nguyễn Thu Hương, Nguyen Ngoc Ba, Jean‐Laurent Casanova, Christophe Delacourt, Eileen G. Hoal, Alexandre Alcaïs, Vu Hong Thai, Lai The Thành, Laurent Abel, Erwin Schurr, Aurélie Cobat
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pntd.0008233

The estimated burden of scrub typhus in Thailand from national surveillance data (2003-2018)
Cited by: 24
Author(s): Tri Wangrangsimakul, Ivo Elliott, Supalert Nedsuwan, Rawadee Kumlert, Soawapak Hinjoy, Kittipong Chaisiri, Nicholas P. J. Day, Sergé Morand
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1009055

Cis-regulatory differences in isoform expression associate with life history strategy variation in Atlantic salmon
Cited by: 25
Author(s): Jukka‐Pekka Verta, Paul V. Debes, Nikolai Piavchenko, Annukka Ruokolainen, Outi Ovaskainen, Jacqueline Emmanuel Moustakas-Verho, Seija Tillanen, Noora Parre, Tutku Aykanat, Jaakko Erkinaro, Craig R. Primmer
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1008780

Using prior information from humans to prioritize genes and gene-associated variants for complex traits in livestock
Cited by: 10
Author(s): Biaty Raymond, Loïc Yengo, Roy Costilla, C. Schrooten, A.C. Bouwman, Ben J. Hayes, R.F. Veerkamp, Peter M. Visscher
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0248956

Characterizing COVID-19 clinical phenotypes and associated comorbidities and complication profiles
Cited by: 42
Author(s): Elizabeth R. Lusczek, Nicholas E. Ingraham, Basil S. Karam, Jennifer Proper, Lianne Siegel, Erika S. Helgeson, Sahar Lotfi-Emran, Emily Zolfaghari, Emma Jones, Michael Usher, Jeffrey G. Chipman, R. Adams Dudley, Bradley J. Benson, Genevieve B. Melton, Anthony Charles, Monica I. Lupei, Christopher J. Tignanelli
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.ppat.1009824

pUL21 is a viral phosphatase adaptor that promotes herpes simplex virus replication and spread
Cited by: 12
Author(s): Tomasz H. Benedyk, Julia Muenzner, Viv Connor, Yue Han, Katherine A. Brown, Kaveesha J. Wijesinghe, Yunhui Zhuang, Susanna Colaco, Guido A. Stoll, Owen S. Tutt, Stanislava Svobodova, Dmitri I. Svergun, Neil Bryant, Janet E. Deane, Andrew E. Firth, Cy M. Jeffries, Colin M. Crump, Stephen C. Graham
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0243704

Cyberchondria in the age of COVID-19
Cited by: 53
Author(s): Nataša Jokić‐Begić, Anita Lauri Korajlija, Una Mikac
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pgen.1008361

An osteocalcin-deficient mouse strain without endocrine abnormalities
Cited by: 74
Author(s): Cassandra R. Diegel, Steven Hann, Ugur M. Ayturk, Jennifer C. W. Hu, Kyung-Eun Lim, Casey J. Droscha, Zachary Madaj, Gabrielle E. Foxa, Isaac Izaguirre, Vai Vivarium And Transgenics Core, Noorulain Paracha, Bohdan Pidhaynyy, Terry L. Dowd, Alexander G. Robling, Matthew L. Warman, Bart O. Williams
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0237170

Physiological and morphological correlates of blood parasite infection in urban and non-urban house sparrow populations
Cited by: 5
Author(s): Coraline Bichet, François Brischoux, Cécile Ribout, Charline Parenteau, Alizée Meillère, Frédéric Angelier
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0236771

Transcriptome analysis of sevoflurane exposure effects at the different brain regions
Cited by: 6
Author(s): Hiroto Yamamoto, Yasuzo Uchida, Tomoki Chiba, Ryota Kurimoto, Taijiro Matsushima, Maiko Inotsume, Chihiro Ishikawa, Haiyan Li, Takashi Shiga, Masafumi Muratani, Tatsuo Uchida, Hiroshi Asahara
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.ppat.1009773

CXCL1: A new diagnostic biomarker for human tuberculosis discovered using Diversity Outbred mice
Cited by: 15
Author(s): Deniz Koyuncu, M. Khalid Khan Niazi, Thomas E. Tavolara, Claudia Abeijón, Melanie Ginese, Yanghui Liao, Carolyn Mark, Aubrey G. Specht, Adam C. Gower, Blanca I. Restrepo, Daniel M. Gatti, Igor Kramnik, Metin N. Gürcan, Bülent Yener, Gillian Beamer
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.ppat.1008334

Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)-driven pulmonary immunopathogenesis
Cited by: 32
Author(s): Junsong Zhang, Jun Li, Yuhong Yuan, Feng Huang, Rong Ma, Baohong Luo, Zhihui Xi, Ting Pan, Bingfeng Liu, Yiwen Zhang, Xu Zhang, Yong Luo, Jin Wang, Meng Zhao, Gen Liu, Kai Deng, Hui Zhang
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.ppat.1008277

Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly
Cited by: 42
Author(s): Robert A. Dick, Chaoyi Xu, Dustin R. Morado, Vladyslav Kravchuk, C.L. Ricana, Terri D. Lyddon, Arianna M. Broad, J. Ryan Feathers, Marc C. Johnson, Volker M. Vogt, Juan R. Perilla, John Briggs, F.K.M. Schur
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0249424

miRGTF-net: Integrative miRNA-gene-TF network analysis reveals key drivers of breast cancer recurrence
Cited by: 15
Author(s): Stepan Nersisyan, A. V. Galatenko, Vladimir Galatenko, M. Yu. Shkurnikov, Alexander G. Tonevitsky
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0232853

An assessment of the impacts of litter treatments on the litter quality and broiler performance: A systematic review and meta-analysis
Cited by: 17
Author(s): Taiani dos Santos de Toledo, Aline Arassiana Piccini Roll, Fernando Rutz, Henrique Müller Dallmann, Marcos Antonio Dai Prá, Fábio Pereira Leivas Leite, Victor Fernando Büttow Roll
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0234494

A cost efficient spatially balanced hierarchical sampling design for monitoring boreal birds incorporating access costs and habitat stratification
Cited by: 10
Author(s): Steven L. Van Wilgenburg, C. Lisa Mahon, Greg Campbell, Logan J. T. McLeod, Margaret Campbell, Dean R. Evans, Wendy E. Easton, Charles M. Francis, Samuel Haché, Craig S. Machtans, Caitlin Mader, C. Lisa Mahon, Robert Rußell, Adam C. Smith, Peter Thomas, Judith D. Toms, Junior A. Tremblay
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1008797

UVR8-mediated inhibition of shade avoidance involves HFR1 stabilization in Arabidopsis
Cited by: 23
Author(s): Eleni Tavridou, Emanuel Schmid‐Siegert, Christian Fankhauser, Roman Ulm
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0250510

American crocodiles (Crocodylus acutus) as restoration bioindicators in the Florida Everglades
Cited by: 4
Author(s): Venetia Briggs-González, Mathieu Basille, Michael S. Cherkiss, Frank J. Mazzotti
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0237894

Emerging fungal pathogen of an invasive grass: Implications for competition with native plant species
Cited by: 4
Author(s): Amy E. Kendig, Vida J. Svahnström, Ashish Adhikari, Philip F. Harmon, S. Luke Flory
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0254852

Ward-level factors associated with methicillin-resistant Staphylococcus aureus acquisition–an electronic medical records study in Singapore
Cited by: 2
Author(s): Zaw Tun, Dale Fisher, Sharon Salmon, Clarence C. Tam
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0233182

Over 13,000 elements from a single bonebed help elucidate disarticulation and transport of an Edmontosaurus thanatocoenosis
Cited by: 2
Author(s): Keith Snyder, Matthew A. McLain, Jared P. Wood, Arthur V. Chadwick
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1009669

Genomic islands targeting dusA in Vibrio species are distantly related to Salmonella Genomic Island 1 and mobilizable by IncC conjugative plasmids
Cited by: 5
Author(s): Romain Durand, Florence Deschênes, Vincent Burrus
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0248489

Enhanced streamflow prediction with SWAT using support vector regression for spatial calibration: A case study in the Illinois River watershed, U.S.
Cited by: 10
Author(s): Liang Yuan, Kenneth J. Forshay
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0242941

Effects of transcranial magnetic stimulation over the left posterior superior temporal gyrus on picture-word interference
Cited by: 2
Author(s): Vitória Piai, Laura Nieberlein, Gesa Hartwigsen
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0236982

Is short-term-variation of fetal-heart-rate a better predictor of fetal acidaemia in labour? A feasibility study
Cited by: 5
Author(s): Habiba Kapaya, Richard Jacques, Thomas Almond, Miss Hilary Rosser, Dilly Anumba
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0251502

“Know your epidemic, know your response”: Epidemiological assessment of the substance use disorder crisis in the United States
Cited by: 8
Author(s): Andrés Hernández, Minxuan Lan, Neil J. MacKinnon, Adam J. Branscum, Diego F. Cuadros
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1008464

CRISPR editing of sftb-1/SF3B1 in Caenorhabditis elegans allows the identification of synthetic interactions with cancer-related mutations and the chemical inhibition of splicing
Cited by: 13
Author(s): Xènia Serrat, Dmytro Kukhtar, Eric Cornes, Anna Esteve‐Codina, Helena Benlloch, Germano Cecere, Julián Cerón
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0250787

A dynamic Bayesian network model for predicting organ failure associations without predefining outcomes
Cited by: 2
Author(s): R. A. De Blasi, Giuseppe Campagna, Stefano Finazzi
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0236679

Characterisation of protein isoforms encoded by the Drosophila Glycogen Synthase Kinase 3 gene shaggy
Cited by: 4
Author(s): Dagmara Korona, Daniel J.H. Nightingale, Bertrand Fabre, Michael G. Nelson, Bettina Fischer, Glynnis Johnson, Jonathan G. Lees, Simon J. Hubbard, Kathryn S. Lilley, Steven Russell
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1009364

A complex genetic architecture in zebrafish relatives Danio quagga and D. kyathit underlies development of stripes and spots
Cited by: 14
Author(s): Braedan M. McCluskey, Susumu Uji, Joseph L. Mancusi, John H. Postlethwait, David M. Parichy
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0237397

Spatial heterogeneity of coral reef benthic communities in Kenya
Cited by: 5
Author(s): Juliet Karisa, David Obura, Chaolun Allen Chen
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0233627

Development syndromes in New World temperate and tropical songbirds
Cited by: 6
Author(s): Suzanne H. Austin, W. Douglas Robinson, Tara Rodden Robinson, Vincenzo A. Ellis, Robert E. Ricklefs
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0255420

Knowledge, attitude and practices of community pharmacists regarding COVID-19: A paper-based survey in Vietnam
Cited by: 12
Author(s): Huong Thi Thanh Nguyen, Dai Xuan Dinh, Văn Minh Nguyễn
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0240474

Were domestic camelids present on the prehispanic South American agricultural frontier? An ancient DNA study
Cited by: 7
Author(s): Cinthia Carolina Abbona, Gustavo Adolfo, Jeff Johnson, Tracy Kim, Adolfo Gil, Steve Wolverton
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0234939

Effect of bovine leukemia virus (BLV) infection on bovine mammary epithelial cells RNA-seq transcriptome profile
Cited by: 4
Author(s): Lucia Martínez Cuesta, Juan Pedro Lirón, María Victoria Nieto Farias, Guillermina Laura Dolcini, María Carolina Ceriani
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1008935

Horizontal transmission and recombination maintain forever young bacterial symbiont genomes
Cited by: 82
Author(s): Shelbi L. Russell, Evan Pepper-Tunick, Jesper Svedberg, Ashley Byrne, Jennie Ruelas Castillo, Christopher Vollmers, Roxanne A. Beinart, Russell Corbett-Detig
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0241367

DNA methylation in blood—Potential to provide new insights into cell biology
Cited by: 3
Author(s): Donia Macartney-Coxson, Alanna M. Cameron, Jane Clapham, Miles C. Benton
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0242940

Development of a minimal KASP marker panel for distinguishing genotypes in apple collections
Cited by: 7
Author(s): Mark Winfield, Amanda Burridge, Matthew Ordidge, Helen Harper, Paul Wilkinson, Daniel Thorogood, Liz Copas, Keith J. Edwards, Gary Barker
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0249254

Large-scale analysis of SARS-CoV-2 spike-glycoprotein mutants demonstrates the need for continuous screening of virus isolates
Cited by: 32
Author(s): Barbara Schrörs, Pablo Riesgo-Ferreiro, Patrick Sorn, Ranganath Gudimella, Thomas Bukur, Thomas W. Rösler, Martin Löwer, Uğur Şahin
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0236548

Techno-functional and 3D shape analysis applied for investigating the variability of backed tools in the Late Middle Paleolithic of Central Europe
Cited by: 16
Author(s): Davide Delpiano, Thorsten Uthmeier
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0232120

Corticosterone and testosterone treatment influence expression of gene pathways linked to meiotic segregation in preovulatory follicles of the domestic hen
Cited by: 2
Author(s): E. Wróbel, Alexandra B. Bentz, W. Walter Lorenz, Steven T. Gardner, Mary T. Mendonça, Kristen J. Navara
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0233841

Whole blood transcriptional responses of very preterm infants during late-onset sepsis
Cited by: 16
Author(s): Sherrianne Ng, Tobias Strunk, Ahwon Lee, Erin E. Gill, Reza Falsafi, Tabitha Woodman, Julie Hibbert, Robert E. W. Hancock, Andrew Currie
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0226548

Extending the use of the World Health Organisations’ water sanitation and hygiene assessment tool for surveys in hospitals – from WASH-FIT to WASH-FAST
Cited by: 12
Author(s): Michuki Maina, Olga Tosas-Auguet, Jacob McKnight, Mathias Zosi, Grace Kimemia, Paul Mwaniki, Arabella Hayter, Margaret Montgomery, Constance Schultsz, Mike English
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0234142

The child’s pantheon: Children’s hierarchical belief structure in real and non-real figures
Cited by: 5
Author(s): Rohan Kapitány, Nicole L. Nelson, Emily Burdett, Thalia R. Goldstein
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0244692

Impact of diabetes self-management, diabetes management self-efficacy and diabetes knowledge on glycemic control in people with Type 2 Diabetes (T2D): A multi-center study in Thailand
Cited by: 23
Author(s): Cameron Hurst, Nitchamon Rakkapao, Karen Hay
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0231122

Direct and indirect effects of land-use intensity on plant communities across elevation in semi-natural grasslands
Cited by: 8
Author(s): Oksana Y. Buzhdygan, Britta Tietjen, Svitlana Rudenko, Volodymyr A. Nikorych, Jana S. Petermann
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0244643

Characterization of cerebrospinal fluid (CSF) microbiota from patients with CSF shunt infection and reinfection using high throughput sequencing of 16S ribosomal RNAgenes
Cited by: 5
Author(s): Kathryn B. Whitlock, Charles E. Pope, Paul Hodor, Lucas R. Hoffman, David L. Limbrick, Patrick J. McDonald, Jason S. Hauptman, Jeffrey G. Ojemann, Tamara D. Simon
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0236791

Eradicating the large white butterfly from New Zealand eliminates a threat to endemic Brassicaceae
Cited by: 6
Author(s): C.B. Phillips, Kerry Brown, Christopher Green, Richard Toft, G.P. Walker, Keith Broome
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0243595

Extreme value theory as a framework for understanding mutation frequency distribution in cancer genomes
Cited by: 2
Author(s): Natsuki Tokutomi, Kenta Nakai, Sumio Sugano
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0239026

Impact of COVID-19 epidemic curtailment strategies in selected Indian states: An analysis by reproduction number and doubling time with incidence modelling
Cited by: 14
Author(s): Arun Mitra, Abhijit Pakhare, Adrija Roy, Ankur Joshi
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1009349

Acetyltransferase Enok regulates transposon silencing and piRNA cluster transcription
Cited by: 3
Author(s): Shih-Ying Tsai, Fu Huang
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0243915

On transformative adaptive activation functions in neural networks for gene expression inference
Cited by: 5
Author(s): Vladimír Kunc, Jǐŕı Kléma
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0232639

Computed tomography-derived radiomic signature of head and neck squamous cell carcinoma (peri)tumoral tissue for the prediction of locoregional recurrence and distant metastasis after concurrent chemo-radiotherapy
Cited by: 27
Author(s): Simon Keek, Sebastian Sanduleanu, Frederik Wesseling, Reinout de Roest, Michiel W. M. van den Brekel, Martijn van der Heijden, Conchita Vens, Giuseppina Calareso, Lisa Licitra, Kathrin Scheckenbach, Marije R. Vergeer, C. René Leemans, Ruud H. Brakenhoff, Irene Nauta, Stefano Cavalieri, Henry C. Woodruff, Tito Poli, Ralph T.H. Leijenaar, Frank Hoebers, Philippe Lambin
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0244532

Mortality and other outcomes of patients with coronavirus disease pneumonia admitted to the emergency department: A prospective observational Brazilian study
Cited by: 19
Author(s): Rodrigo Antônio Brandão Neto, Júlio Flávio Meirelles Marchini, Lucas Oliveira Marino, Julio César García de Alencar, Felippe Lazar Neto, Sabrina Corrêa da Costa Ribeiro, Fernando Salvetti Valente, Hassan Rahhal, Luz Marina Gómez Gómez, Cauê Gasparotto Bueno, Carine C. Faria, Valdeci da Cunha, Eduardo Messias Hirano Padrão, Irineu Tadeu Velasco, Heraldo Possolo de Souza
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0250022

Community-based conservation with formal protection provides large collateral benefits to Amazonian migratory waterbirds
Cited by: 7
Author(s): João Vitor Campos‐Silva, Carlos A. Peres, Joseph E. Hawes, Mark I. Abrahams, Paulo César Machado Andrade, L. Davenport
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0230941

Demarcating geographic regions using community detection in commuting networks with significant self-loops
Cited by: 14
Author(s): Mark He, Joseph Glasser, Nathaniel Pritchard, Shankar Bhamidi, Nikhil Kaza
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0232609

The two types of society: Computationally revealing recurrent social formations and their evolutionary trajectories
Cited by: 3
Author(s): Lux Miranda, Jacob Freeman
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1009802

Endothelial lipase mediates efficient lipolysis of triglyceride-rich lipoproteins
Cited by: 12
Author(s): Sumeet A. Khetarpal, Cecilia Vitali, Michael G. Levin, Derek Klarin, Joseph Park, Akhil Pampana, John S. Millar, Takashi Kuwano, Dhavamani Sugasini, Papasani V. Subbaiah, Jeffrey T. Billheimer, Pradeep Natarajan, Daniel J. Rader
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0247378

Stool metabolome-microbiota evaluation among children and adolescents with obesity, overweight, and normal-weight using 1H NMR and 16S rRNA gene profiling
Cited by: 11
Author(s): José Diógenes Jaimes, Andrea Slavíčková, Jakub Hurych, Ondřej Cinek, Ben Nichols, Lucie Vodolánová, K. Černý, Jaroslav Havlík
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.ppat.1008401

Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis
Cited by: 35
Author(s): Jérémie Bazin, Kadarkaraisamy Mariappan, Yunhe Jiang, Thomas Blein, Ronny Völz, Martín Crespi, Heribert Hirt
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0228933

Transcriptomic analysis to elucidate the response of honeybees (Hymenoptera: Apidae) to amitraz treatment
Cited by: 5
Author(s): Ye Liang, Peng Liu, Tengfei Shi, Wang AnRan, Yujie Zhu, Lai Li, Linsheng Yu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0219652

Drone-based effective counting and ageing of hippopotamus (Hippopotamus amphibius) in the Okavango Delta in Botswana
Cited by: 16
Author(s): Victoria L. Inman, Richard T. Kingsford, Michael J. Chase, Keith E. A. Leggett
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0254072

Changes in the structure and composition of the ‘Mexical’ scrubland bee community along an elevational gradient
Cited by: 5
Author(s): Sergio Osorio-Canadas, Noé Flores-Hernández, Tania Sánchez-Ortiz, Alfonso Valiente‐Banuet
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0230254

Forecasting severe grape downy mildew attacks using machine learning
Cited by: 26
Author(s): Mathilde Chen, François Brun, M. Raynal, David Makowski
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0225658

Highly multiplexed quantitative PCR-based platform for evaluation of chicken immune responses
Cited by: 15
Author(s): Dominika Borowska, Richard Kuo, Richard Bailey, Kellie Watson, Pete Kaiser, Lonneke Vervelde, Mark P. Stevens
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0231925

Determinants and constraints of feather growth
Cited by: 10
Author(s): Lukas Jenni, Kathrin Ganz, Pietro Milanesi, Raffael Winkler
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0237715

Teosinte (Zea mays ssp parviglumis) growth and transcriptomic response to weed stress identifies similarities and differences between varieties and with modern maize varieties
Cited by: 4
Author(s): Stephanie A. Bruggeman, David P. Horvath, Anne Fennell, Jose L. Gonzalez-Hernandez, Sharon A. Clay
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0252231

Abundance estimation for line transect sampling: A comparison of distance sampling and spatial capture-recapture models
Cited by: 6
Author(s): Nathan J. Crum, Lisa C. Neyman, Timothy A. Gowan
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.ppat.1009768

Trichuris muris infection drives cell-intrinsic IL4R alpha independent colonic RELMα+ macrophages
Cited by: 6
Author(s): Ruth Forman, Larisa Logunova, Hannah Smith, Kelly Wemyss, Iris Mair, Louis Boon, Judith E. Allen, Werner Müller, Joanne L. Pennock, Kathryn J. Else
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0248864

Prevalence of psychiatric disorders in Norwegian 10-14-year-olds: Results from a cross-sectional study
Cited by: 5
Author(s): Tormod Bøe, Einar Heiervang, Kjell Morten Stormark, Astri J. Lundervold, Mari Hysing
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0244973

Floral hosts of leaf-cutter bees (Megachilidae) in a biodiversity hotspot revealed by pollen DNA metabarcoding of historic specimens
Cited by: 9
Author(s): Annemarie Gous, Connal Eardley, Steven D. Johnson, Dirk Swanevelder, Sandi Willows‐Munro
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0228811

Environmental DNA from plastic and textile marine litter detects exotic and nuisance species nearby ports
Cited by: 26
Author(s): Aitor Ibabe, Fernando Rayón, José Luis Martínez, Eva García‐Vázquez
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0240269

Using association rule mining to jointly detect clinical features and differentially expressed genes related to chronic inflammatory diseases
Cited by: 6
Author(s): Rosana Veroneze, Sâmia Cruz Tfaile Corbi, Bárbara Roque da Silva, Cristiane S. Rocha, Cláudia Vianna Maurer-Morelli, Silvana Regina Perez Orrico, Joni Augusto Cirelli, Fernando J. Von Zuben, Raquel Mantuaneli Scarel‐Caminaga
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0249560

Sexual inhibition and sexual excitation in a sample of Polish women
Cited by: 7
Author(s): Krzysztof Nowosielski, Jacek Kurpisz, Robert Kowalczyk
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0227528

Morphologically and physiologically diverse fruits of two Lepidium species differ in allocation of glucosinolates into immature and mature seed and pericarp
Cited by: 3
Author(s): Said Mohammed, Samik Bhattacharya, Matthias Alexander Gesing, Katharina Klupsch, Günter Theißen, Klaus Mummenhoff, Caroline Müller
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0245439

Impact of integrating objective structured clinical examination into academic student assessment: Large-scale experience in a French medical school
Cited by: 10
Author(s): Alexandre Matet, Ludovic Fournel, F. Gaillard, Laurence Amar, Jean‐Benoît Arlet, Stéphanie Baron, Anne‐Sophie Bats, Céline Buffel du Vaure, Caroline Charlier, Victoire de Lastours, Albert Faye, Eve Jablon, Natacha Kadlub, Julien Leguen, David Lebeaux, Alexandre Malmartel, Tristan Mirault, Benjamin Planquette, Alexis Régent, Jean-Laurent Thébault, Alexy Tran-Dinh, Alexandre Nuzzo, Guillaume Turc, Gérard Friedlander, Philippe Ruszniewski, Cécile Badoual, Brigitte Ranque, Mehdi Oualha, Marie Courbebaisse
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijerph8093528

Online Social Networking and Addiction—A Review of the Psychological Literature
Cited by: 1,284
Author(s): Daria J. Kuss, Mark D. Griffiths
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pone.0236480

Effects of quality-based procedure hospital funding reform in Ontario, Canada: An interrupted time series study
Cited by: 3
Author(s): Alvin H. Li, Karen S. Palmer, Monica Taljaard, J. Michael Paterson, Adalsteinn D. Brown, Anjie Huang, Husayn Marani, Lauren Lapointe‐Shaw, Daniel Pincus, Marian S. Wettstein, Girish S. Kulkarni, David Wasserstein, Noah Ivers
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0250518

LPCAT1-TERT fusions are uniquely recurrent in epithelioid trophoblastic tumors and positively regulate cell growth
Cited by: 4
Author(s): Gavin R. Oliver, Sofia Marcano-Bonilla, Jonathan Quist, Ezequiel J. Tolosa, Eriko Iguchi, Amy A. Swanson, Nicole L. Hoppman, Tanya L. Schwab, Ashley N. Sigafoos, Naresh Prodduturi, Jesse S. Voss, Shannon M. Knight, Jin Zhang, Numrah Fadra, Raúl Urrutia, Michael A. Zimmerman, Jan B. Egan, Anthony G. Bilyeu, Jin Jen, Ema Veras, Remaa Al-Safi, Matthew S. Block, Sarah Kerr, Martín E. Fernández-Zapico, John K. Schoolmeester, Eric W. Klee
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0253848

Predictors of mortality in patients with drug-resistant tuberculosis: A systematic review and meta-analysis
Cited by: 10
Author(s): Ayinalem Alemu, Zebenay Workneh Bitew, Teshager Worku, Dinka Fikadu Gamtesa, Animut Alebel
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0234880

The proximity of ideas: An analysis of patent text using machine learning
Cited by: 12
Author(s): Shuijuan Feng
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0253830

High-molecular weight DNA extraction, clean-up and size selection for long-read sequencing
Cited by: 20
Author(s): Ashley Jones, Cynthia Torkel, David Stanley, Jamila Nasim, Justin O. Borevitz, Benjamin Schwessinger
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0253102

Signal-based optical map alignment
Cited by: 1
Author(s): Mehmet Akdel, Henri van de Geest, Elio Schijlen, Irma M.H. van Rijswijck, Eddy J. Smid, Gabino F. Sánchez-Pérez, Dick de Ridder
Software Mentions: 3
Published: about 4 years ago