pypi: PACE | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0244430

PFP-WGAN: Protein function prediction by discovering Gene Ontology term correlations with generative adversarial networks
Cited by: 7
Author(s): Seyyede Fatemeh Seyyedsalehi, Mahdieh Soleymani, Hamid R. Rabiee, Mohammad R. K. Mofrad
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0241253

CaBagE: A Cas9-based Background Elimination strategy for targeted, long-read DNA sequencing
Cited by: 16
Author(s): Amelia D. Wallace, Thomas A Sasani, Jordan Swanier, Brooke L. Gates, Jeff Greenland, Brent S. Pedersen, Katherine E. Varley, Aaron R. Quinlan
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0224521

On the development of sleep states in the first weeks of life
Cited by: 13
Author(s): Tomasz Wielek, Renata Del Giudice, Adelheid Lang, Małgorzata Wisłowska, Peter Ott, Manuel Schabus
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0237277

Causal graph analysis of COVID-19 observational data in German districts reveals effects of determining factors on reported case numbers
Cited by: 14
Author(s): Edgar Steiger, Tobias Mussgnug, Lars Eric Kroll
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1008935

Horizontal transmission and recombination maintain forever young bacterial symbiont genomes
Cited by: 82
Author(s): Shelbi L. Russell, Evan Pepper-Tunick, Jesper Svedberg, Ashley Byrne, Jennie Ruelas Castillo, Christopher Vollmers, Roxanne A. Beinart, Russell Corbett-Detig
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0250022

Community-based conservation with formal protection provides large collateral benefits to Amazonian migratory waterbirds
Cited by: 7
Author(s): João Vitor Campos‐Silva, Carlos A. Peres, Joseph E. Hawes, Mark I. Abrahams, Paulo César Machado Andrade, L. Davenport
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1008797

UVR8-mediated inhibition of shade avoidance involves HFR1 stabilization in Arabidopsis
Cited by: 23
Author(s): Eleni Tavridou, Emanuel Schmid‐Siegert, Christian Fankhauser, Roman Ulm
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0249695

Use of amplicon-based sequencing for testing fetal identity and monogenic traits with Single Circulating Trophoblast (SCT) as one form of cell-based NIPT
Cited by: 5
Author(s): Xinming Zhuo, Qun Wang, Liesbeth Vossaert, Roseen Salman, Adriel Kim, Ignatia Van den Veyver, Amy M. Breman, Arthur L. Beaudet
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0255472

Predictors for one-year outcomes of cardiorespiratory fitness and cardiovascular risk factor control after cardiac rehabilitation in elderly patients: The EU-CaRE study
Cited by: 2
Author(s): Prisca Eser, Thimo Marcin, Eva Prescott, Leonie F Prins, Evelien Kolkman, Wendy Bruins, Astrid E van der Velde, Carlos Peña-Gil, Marie‐Christine Iliou, Diego Ardissino, Uwe Zeymer, Esther P. Meindersma, Arnoud. W. J. Van’tHof, Ed P de Kluiver, Matthias Wilhelm
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0234494

A cost efficient spatially balanced hierarchical sampling design for monitoring boreal birds incorporating access costs and habitat stratification
Cited by: 10
Author(s): Steven L. Van Wilgenburg, C. Lisa Mahon, Greg Campbell, Logan J. T. McLeod, Margaret Campbell, Dean R. Evans, Wendy E. Easton, Charles M. Francis, Samuel Haché, Craig S. Machtans, Caitlin Mader, C. Lisa Mahon, Robert Rußell, Adam C. Smith, Peter Thomas, Judith D. Toms, Junior A. Tremblay
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pntd.0008233

The estimated burden of scrub typhus in Thailand from national surveillance data (2003-2018)
Cited by: 24
Author(s): Tri Wangrangsimakul, Ivo Elliott, Supalert Nedsuwan, Rawadee Kumlert, Soawapak Hinjoy, Kittipong Chaisiri, Nicholas P. J. Day, Sergé Morand
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0240183

Transcriptome analysis revealed misregulated gene expression in blastoderms of interspecific chicken and Japanese quail F1 hybrids
Cited by: 0
Author(s): Satoshi Ishishita, Shoji Tatsumoto, Keiji Kinoshita, Mitsuo Nunome, Takayuki Suzuki, Yasuhiro Go, Yoichi Matsuda
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0252004

Effect of mupirocin for Staphylococcus aureus decolonization on the microbiome of the nose and throat in community and nursing home dwelling adults
Cited by: 4
Author(s): Mary-Claire Roghmann, Alison D. Lydecker, Michelle Shardell, Robert T. DeBoy, J. Kristie Johnson, Long Zhao, Lauren Hittle, Emmanuel F. Mongodin
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0230931

Motivation to access laparoscopic skills training: Results of a Canadian survey of obstetrics and gynecology residents
Cited by: 4
Author(s): Jocelyn Stairs, Bradley W. Bergey, Finlay Maguire, Stephanie Scott
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1009774

A scalable Drosophila assay for clinical interpretation of human PTEN variants in suppression of PI3K/AKT induced cellular proliferation
Cited by: 4
Author(s): Payel Ganguly, Landiso Madonsela, Jesse T. Chao, Christopher Loewen, Timothy P. O’Connor, Esther M. Verheyen, Douglas W. Allan
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0219633

Contributions to human breast milk microbiome and enteromammary transfer of Bifidobacterium breve
Cited by: 72
Author(s): Kattayoun Kordy, Thaidra Gaufin, Martin Mwangi, Ли Фан, Chiara Cerini, Dong Hoon Lee, Helty Adisetiyo, Cora L. Woodward, Pia S. Pannaraj, Nicole H. Tobin, Grace M. Aldrovandi
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0233597

Diversification rate vs. diversification density: Decoupled consequences of plant height for diversification of Alooideae in time and space
Cited by: 9
Author(s): Florian C. Boucher, Anne-Sophie Quatela, Allan G. Ellis, G. Anthony Verboom
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0238202

Immune and sex-biased gene expression in the threatened Mojave desert tortoise, Gopherus agassizii
Cited by: 2
Author(s): Cindy Xu, Greer A. Dolby, K. Kristina Drake, Todd C. Esque, Kenro Kusumi
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0251366

Inequality indices to monitor geographic differences in incidence, mortality and fatality rates over time during the COVID-19 pandemic
Cited by: 4
Author(s): Kirsi Manz, Ulrich Mansmann
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0256657

Microbiota composition and mucosal immunity in patients with asymptomatic diverticulosis and controls
Cited by: 10
Author(s): Tessel Meike van Rossen, Rogier E. Ooijevaar, J. Kuyvenhoven, Anat Eck, Herman Bril, René Buijsman, Marja A. Boermeester, H. B. A. C. Stockmann, Niels de Korte, Andries E. Budding
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0237351

Empirical vs. light-use efficiency modelling for estimating carbon fluxes in a mid-succession ecosystem developed on abandoned karst grassland
Cited by: 5
Author(s): Koffi Dodji Noumonvi, Mitja Ferlan
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0238034

An evaluation of bird and bat mortality at wind turbines in the Northeastern United States
Cited by: 12
Author(s): Daniel Choi, Thomas Wittig, Bryan M. Kluever
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1009578

Functional-genomic analysis reveals intraspecies diversification of antiviral receptor transporter proteins in Xenopus laevis
Cited by: 1
Author(s): Ian N. Boys, Katrina B. Mar, John W. Schoggins
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0235752

Stable isotope analysis of multiple tissues from Hawaiian honeycreepers indicates elevational movement
Cited by: 5
Author(s): Kristina L. Paxton, Jeffery F Kelly, Sandra M Pletchet, Eben H. Paxton
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0246689

Can we detect conditioned variation in political speech? two kinds of discussion and types of conversation
Cited by: 2
Author(s): Sabina Sloman, Daniel M. Oppenheimer, Simon DeDeo
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0237001

Highs and lows: Genetic susceptibility to daily events
Cited by: 9
Author(s): Maurizio Sicorello, Linda Dieckmann, Dirk Moser, Vanessa Lux, Maike Luhmann, A. Neubauer, Wolff Schlotz, Robert Kumsta
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0229294

Catecholaminergic modulation of the cost of cognitive control in healthy older adults
Cited by: 9
Author(s): Monja I. Froböse, Andrew Westbrook, Mirjam Bloemendaal, Esther Aarts, Roshan Cools
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0253037

A meta-analysis of transcriptomic profiles of Huntington’s disease patients
Cited by: 14
Author(s): Manuel Seefelder, Stefan Kochanek
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0236348

Unraveling the molecular pathobiology of vocal fold systemic dehydration using an in vivo rabbit model
Cited by: 8
Author(s): Naíla Cannes do Nascimento, Andrea Pires dos Santos, M. Preeti Sivasankar, Abigail Cox
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0243735

Prevalence of respiratory viruses using polymerase chain reaction in children with wheezing, a systematic review and meta–analysis
Cited by: 3
Author(s): Cyprien Kengne‐Nde, Sébastien Kenmoe, Abdou Fatawou Modiyinji, Richard Njouom
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0255370

Inclusion of photoautotrophic cultivated diatom biomass in salmon feed can deter lice
Cited by: 2
Author(s): Hans Christian Eilertsen, Edel O. Elvevoll, Ingeborg Hulda Giæver, Jon Brage Svenning, Lars Dalheim, Ragnhild Aven Svalheim, Birthe Vang, Sten Ivar Siikavuopio, Ragnhild Dragøy, Richard Andre Ingebrigtsen, Espen Hansen, Anette Hustad, Karl‐Erik Eilertsen
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009409

Widespread misregulation of inter-species hybrid transcriptomes due to sex-specific and sex-chromosome regulatory evolution
Cited by: 24
Author(s): Santiago Sánchez‐Ramírez, Jörg G Weiss, Cristel G. Thomas, Asher D. Cutter
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0225658

Highly multiplexed quantitative PCR-based platform for evaluation of chicken immune responses
Cited by: 15
Author(s): Dominika Borowska, Richard Kuo, Richard Bailey, Kellie Watson, Pete Kaiser, Lonneke Vervelde, Mark P. Stevens
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pgen.1009466

activin-2 is required for regeneration of polarity on the planarian anterior-posterior axis
Cited by: 13
Author(s): Jennifer Cloutier, Conor L. McMann, Isaac M. Oderberg, Peter W. Reddien
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0241057

Diversity and structural differences of bacterial microbial communities in rhizocompartments of desert leguminous plants
Cited by: 8
Author(s): Ziyuan Zhou, Minghan Yu, Guodong Ding, Guanglei Gao, Yingying He
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0235370

Experimental methodologies can affect pathogenicity of Batrachochytrium salamandrivorans infections
Cited by: 5
Author(s): Rajeev Kumar, Daniel A. Malagon, Edward Davis Carter, Debra L. Miller, Markese Bohanon, J. Patrick W. Cusaac, Anna C. Peterson, Matthew J. Gray
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0240177

Understanding American premium chocolate consumer perception of craft chocolate and desirable product attributes using focus groups and projective mapping
Cited by: 13
Author(s): Allison Brown, Alyssa J. Bakke, Helene Hopfer
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0227161

Assessing trends and vulnerabilities in the mutualism between whitebark pine (Pinus albicaulis) and Clark’s nutcracker (Nucifraga columbiana) in national parks of the Sierra-Cascade region
Cited by: 2
Author(s): Chris Ray, Regina M. Rochefort, Jason I. Ransom, Jonathan C. B. Nesmith, Sylvia Haultain, Taza D. Schaming, John R. Boetsch, Mandy L Holmgren, Robert L. Wilkerson, Rodney B. Siegel
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0250654

Potential G-quadruplexes and i-Motifs in the SARS-CoV-2
Cited by: 25
Author(s): Efres Belmonte-Reche, Israel Serrano‐Chacón, Carlos González, Juan Gallo, Manuel Bañobre‐López
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0247534

Lettuce (Lactuca sativa) productivity influenced by microbial inocula under nitrogen-limited conditions in aquaponics
Cited by: 9
Author(s): Jessica A. Day, Christian Diener, Anne E. Otwell, Kourtney E. Tams, Brad M. Bebout, Angela M. Detweiler, Michael Lee, Madeline T. Scott, Wilson Ta, Monica Ha, Shienna A. Carreon, Kenny Tong, Abdirizak A. Ali, Sean M. Gibbons, Nitin S. Baliga
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0228094

Human and climatic drivers affect spatial fishing patterns in a multiple-use marine protected area: The Galapagos Marine Reserve
Cited by: 14
Author(s): Mauricio Castrejón, Anthony Charles
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0255977

A machine learning approach to predict extreme inactivity in COPD patients using non-activity-related clinical data
Cited by: 1
Author(s): B. Aguilaniu, David J. Hess, É. Kelkel, Amandine Briault, Marie Destors, Jacques Boutros, Pei Zhi Li, Anestis Antoniadis
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0236728

The prevalence of psychiatric symptoms before the diagnosis of Parkinson’s disease in a nationwide cohort: A comparison to patients with cerebral infarction
Cited by: 9
Author(s): Szabolcs Szatmári, András Ajtay, Ferenc Oberfrank, Balázs Dobi, Dániel Bereczki
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1009477

Drivers of linkage disequilibrium across a species’ geographic range
Cited by: 10
Author(s): Kay Lucek, Yvonne Willi
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0237241

Associations between historical redlining and birth outcomes from 2006 through 2015 in California
Cited by: 82
Author(s): Anthony Nardone, Joan A. Casey, Kara E. Rudolph, Deborah Karasek, Mahasin S. Mujahid, Rachel Morello‐Frosch
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0250600

Validity concerns with the Revised Study Process Questionnaire (R-SPQ-2F) in undergraduate anatomy & physiology students
Cited by: 5
Author(s): Staci Neas Johnson, Eliza Gallagher, Anna Marie Vagnozzi
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0228188

Precision medicine and actionable alterations in lung cancer: A single institution experience
Cited by: 7
Author(s): Isa Mambetsariev, Yingyu Wang, Chen Chen, Sorena Nadaf, Rebecca Pharaon, Jeremy Fricke, Idoroenyi Amanam, Arya Amini, Andrea Bild, Peiguo Chu, Loretta Erhunmwunsee, Jae Kim, Janet Munu, Raju Pillai, Dan J. Raz, Sagus Sampath, Lalitkumar K. Vora, Fang Qiu, Lynette M. Smith, Surinder K. Batra, Erminia Massarelli, Marianna Koczywas, Karen L. Reckamp, Ravi Salgia
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0232436

Keep Garfagnina alive. An integrated study on patterns of homozygosity, genomic inbreeding, admixture and breed traceability of the Italian Garfagnina goat breed
Cited by: 9
Author(s): Christos Dadousis, Francesca Cecchi, Michela Ablondi, Maria Chiara Fabbri, Alessandra Stella, Rıccardo Bozzi
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0246446

Using touchscreen equipped operant chambers to study animal cognition. Benefits, limitations, and advice
Cited by: 8
Author(s): Benjamin M Seitz, Kelsey McCune, Maggie MacPherson, Luisa Bergeron, Aaron P. Blaisdell, Corina J. Logan
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0253741

Transcriptome and proteome of the corm, leaf and flower of Hypoxis hemerocallidea (African potato)
Cited by: 0
Author(s): Mihai-Silviu Tomescu, Selisha A. Sooklal, Thuto Ntsowe, Previn Naicker, Barbara Darnhofer, Robert H. Archer, Stoyan Stoychev, Dirk Swanevelder, Ruth Birner‐Grünberger, Karl Rumbold
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0227189

Quantifying tourism booms and the increasing footprint in the Arctic with social media data
Cited by: 25
Author(s): Claire A. Runge, Rémi M. Daigle, Vera Helene Hausner
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pgen.1009392

Genome-wide association study of resistance to Mycobacterium tuberculosis infection identifies a locus at 10q26.2 in three distinct populations
Cited by: 14
Author(s): Jocelyn Quistrebert, Marianna Orlova, Gaspard Kerner, Le Thi Ton, Nguyễn Trong Luong, Nguyễn Thanh Danh, Quentin B. Vincent, Fabienne Jabot‐Hanin, Yoann Seeleuthner, Jacinta Bustamante, Stéphanie Boisson‐Dupuis, Nguyễn Thu Hương, Nguyen Ngoc Ba, Jean‐Laurent Casanova, Christophe Delacourt, Eileen G. Hoal, Alexandre Alcaïs, Vu Hong Thai, Lai The Thành, Laurent Abel, Erwin Schurr, Aurélie Cobat
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0231837

Effects of user behaviors on accumulation of social capital in an online social network
Cited by: 10
Author(s): Yuri Germanovich Rykov, Olessia Koltsova, Yadviga Sinyavskaya
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0250510

American crocodiles (Crocodylus acutus) as restoration bioindicators in the Florida Everglades
Cited by: 4
Author(s): Venetia Briggs-González, Mathieu Basille, Michael S. Cherkiss, Frank J. Mazzotti
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0236595

Interactions of Segmented Filamentous Bacteria (Candidatus Savagella) and bacterial drivers in colitis-associated colorectal cancer development
Cited by: 4
Author(s): Annie E. Wolfe, Jacob E. Moskowitz, Craig L. Franklin, Timothy Wiemken, Aaron C. Ericsson
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0236771

Transcriptome analysis of sevoflurane exposure effects at the different brain regions
Cited by: 6
Author(s): Hiroto Yamamoto, Yasuzo Uchida, Tomoki Chiba, Ryota Kurimoto, Taijiro Matsushima, Maiko Inotsume, Chihiro Ishikawa, Haiyan Li, Takashi Shiga, Masafumi Muratani, Tatsuo Uchida, Hiroshi Asahara
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0240322

Evaluating socio-economic and conservation impacts of management: A case study of time-area closures on Georges Bank
Cited by: 5
Author(s): David M. Keith, Jessica A. Sameoto, Freya Keyser, Christine A. Ward-Paige
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0219652

Drone-based effective counting and ageing of hippopotamus (Hippopotamus amphibius) in the Okavango Delta in Botswana
Cited by: 16
Author(s): Victoria L. Inman, Richard T. Kingsford, Michael J. Chase, Keith E. A. Leggett
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0232835

Effects of arthropod inquilines on growth and reproductive effort among metacommunities of the purple pitcher plant (Sarracenia purpurea var. montana)
Cited by: 1
Author(s): Rebecca E. Hale, Elise Powell, Leila Beikmohamadi, Mara L. Alexander
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1009526

Expression of the cancer-associated DNA polymerase ε P286R in fission yeast leads to translesion synthesis polymerase dependent hypermutation and defective DNA replication
Cited by: 5
Author(s): Ignacio Soriano, Enrique Vázquez, Nagore de León, Sibyl Bertrand, Ellen Heitzer, Sophia Toumazou, Zhihan Bo, Claire Palles, Chen-Chun Pai, Timothy C. Humphrey, Ian Tomlinson, Sue Cotterill, Stephen Kearsey
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0235833

Main and interacting effects of physical activity and sedentary time on older adults’ BMI: The moderating roles of socio-demographic and environmental attributes
Cited by: 5
Author(s): Delfien Van Dyck, Anthony Barnett, Jelle Van Cauwenberg, Casper J. P. Zhang, Cindy H.P. Sit, Ester Cerin
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0244408

Genome-wide association study and pathway analysis identify NTRK2 as a novel candidate gene for litter size in sheep
Cited by: 13
Author(s): Seyed Mehdi Esmaeili-Fard, Mohsen Gholizadeh, Seyed Hasan Hafezian, Rostam Abdollahi-Arpanahi
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0247055

Statistical meta-analysis to investigate the association between the Interleukin-6 (IL-6) gene polymorphisms and cancer risk
Cited by: 16
Author(s): Md. Harun-Or-Roshid, Md. Borqat Ali, Jesmin, Md. Nurul Haque Mollah
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0233951

Predicting biomass of rice with intermediate traits: Modeling method combining crop growth models and genomic prediction models
Cited by: 14
Author(s): Yusuke Toda, Hitomi Wakatsuki, Toru Aoike, Hiromi Kajiya‐Kanegae, Mariko Yamasaki, Takuma Yoshioka, Kaworu Ebana, Takeshi Hayashi, Hiroshi Nakagawa, Toshihiro Hasegawa, Hiroyoshi Iwata
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0238385

Replicable simulation of distal hot water premise plumbing using convectively-mixed pipe reactors
Cited by: 3
Author(s): Maryellen Spencer, Abraham C. Cullom, William J. Rhoads, Amy Pruden, Marc Edwards
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0238076

Deletion of Mediator 1 suppresses TGFβ signaling leading to changes in epidermal lineages and regeneration
Cited by: 3
Author(s): Yuko Oda, Thai Nguyen, Akiko Hata, Mark B. Meyer, J. Wesley Pike, Daniel Bikle
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pntd.0009357

Mark-release-recapture of male Aedes aegypti (Diptera: Culicidae): Use of rhodamine B to estimate movement, mating and population parameters in preparation for an incompatible male program
Cited by: 10
Author(s): Brendan J Trewin, Dan Pagendam, Brian J. Johnson, Chris Paton, Nigel Snoad, Scott A. Ritchie, Kyran M. Staunton, Bradley J. White, Sara N. Mitchell, Nigel W. Beebe
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0238090

Simulation of the COVID-19 epidemic on the social network of Slovenia: Estimating the intrinsic forecast uncertainty
Cited by: 22
Author(s): Žiga Zaplotnik, Aleksandar Gavrić, Luka Medic
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0231510

Analyses of cancer incidence and other morbidities in gamma irradiated B6CF1 mice
Cited by: 7
Author(s): Alia Zander, Tatjana Paunesku, Gayle E. Woloschak
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0253814

Mortality and morbidity of asthma and chronic obstructive pulmonary disease associated with ambient environment in metropolitans in Taiwan
Cited by: 9
Author(s): Yasmin Zafirah, Yu‐Kai Lin, Gerry Andhikaputra, Liwen Deng, Fung‐Chang Sung, Yu Chun Wang
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009055

Cis-regulatory differences in isoform expression associate with life history strategy variation in Atlantic salmon
Cited by: 25
Author(s): Jukka‐Pekka Verta, Paul V. Debes, Nikolai Piavchenko, Annukka Ruokolainen, Outi Ovaskainen, Jacqueline Emmanuel Moustakas-Verho, Seija Tillanen, Noora Parre, Tutku Aykanat, Jaakko Erkinaro, Craig R. Primmer
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0246508

Relationships between fox populations and rabies virus spread in northern Canada
Cited by: 17
Author(s): Susan A. Nadin-Davis, Emilie Falardeau, Alex Flynn, Hugh Whitney, H. Dawn Marshall
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0245064

Racial and geographic variation in effects of maternal education and neighborhood-level measures of socioeconomic status on gestational age at birth: Findings from the ECHO cohorts
Cited by: 19
Author(s): Anne L. Dunlop, Alicynne Glazier Essalmi, Lyndsay Alvalos, Carrie V. Breton, Carlos A. Camargo, Whitney Cowell, Dana Dabelea, Stephen R. Dager, Cristiane S. Duarte, Amy J. Elliott, Raina N. Fichorova, James E. Gern, Monique M. Hedderson, Elizabeth Hom Thepaksorn, Kathi Huddleston, Margaret R. Karagas, Ken Kleinman, Leslie D. Leve, Ximin Li, Yijun Li, Augusto A. Litonjua, Yunin Ludena-Rodriguez, Juliette C. Madan, Julio Mateus Nino, Cynthia McEvoy, Thomas G. O’Connor, Amy Padula, Nigel Paneth, Frederica P. Perera, Sheela Sathyanarayana, Rebecca J. Schmidt, Robert T. Schultz, Jessica Snowden, Joseph B. Stanford, Leonardo Trasande, Heather E. Volk, William Wheaton, Rosalind J. Wright, Monica McGrath
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0227530

Soil solution in Swiss forest stands: A 20 year's time series
Cited by: 11
Author(s): Sabine Braun, Simon Tresch, Sabine Augustin
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0244532

Mortality and other outcomes of patients with coronavirus disease pneumonia admitted to the emergency department: A prospective observational Brazilian study
Cited by: 19
Author(s): Rodrigo Antônio Brandão Neto, Júlio Flávio Meirelles Marchini, Lucas Oliveira Marino, Julio César García de Alencar, Felippe Lazar Neto, Sabrina Corrêa da Costa Ribeiro, Fernando Salvetti Valente, Hassan Rahhal, Luz Marina Gómez Gómez, Cauê Gasparotto Bueno, Carine C. Faria, Valdeci da Cunha, Eduardo Messias Hirano Padrão, Irineu Tadeu Velasco, Heraldo Possolo de Souza
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0254852

Ward-level factors associated with methicillin-resistant Staphylococcus aureus acquisition–an electronic medical records study in Singapore
Cited by: 2
Author(s): Zaw Tun, Dale Fisher, Sharon Salmon, Clarence C. Tam
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0228206

Mixed evidence for the relationship between periodontitis and Alzheimer’s disease: A bidirectional Mendelian randomization study
Cited by: 20
Author(s): Yi‐Qian Sun, Rebecca C Richmond, Yue Chen, Xiao-Mei Mai
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0237894

Emerging fungal pathogen of an invasive grass: Implications for competition with native plant species
Cited by: 4
Author(s): Amy E. Kendig, Vida J. Svahnström, Ashish Adhikari, Philip F. Harmon, S. Luke Flory
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pntd.0007743

Transcriptome of the parasitic flatworm Schistosoma mansoni during intra-mammalian development
Cited by: 19
Author(s): Arporn Wangwiwatsin, Anna V. Protasio, Shona Wilson, Christian Owusu, Nancy Holroyd, Mandy Sanders, Jacqueline A. Keane, Michael J. Doenhoff, Gabriel Rinaldi, Matthew Berriman
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0231925

Determinants and constraints of feather growth
Cited by: 10
Author(s): Lukas Jenni, Kathrin Ganz, Pietro Milanesi, Raffael Winkler
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0255030

ReVisE: Remote visualization environment for large numerical simulation datasets
Cited by: 0
Author(s): Stepan Orlov, Aleksey Kuzin, Alexey Zhuravlev, Vyacheslav Reshetnikov, Egor Usik, Vladislav Kiev, Andrey Pyatlin
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0244966

Clinical and pharmacokinetic/dynamic outcomes of prolonged infusions of beta-lactam antimicrobials: An overview of systematic reviews
Cited by: 18
Author(s): Pierre Thabet, Anchal Joshi, Erika MacDonald, Brian Hutton, Wei Cheng, Adrienne Stevens, Salmaan Kanji
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pgen.1008361

An osteocalcin-deficient mouse strain without endocrine abnormalities
Cited by: 74
Author(s): Cassandra R. Diegel, Steven Hann, Ugur M. Ayturk, Jennifer C. W. Hu, Kyung-Eun Lim, Casey J. Droscha, Zachary Madaj, Gabrielle E. Foxa, Isaac Izaguirre, Vai Vivarium And Transgenics Core, Noorulain Paracha, Bohdan Pidhaynyy, Terry L. Dowd, Alexander G. Robling, Matthew L. Warman, Bart O. Williams
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0256692

“When will it be over?” U.S. children’s questions and parents’ responses about the COVID-19 pandemic
Cited by: 7
Author(s): David Menéndez, Rebecca E Klapper, Michelle Z Golden, Ava R Mandel, Katrina A Nicholas, Maria H Schapfel, Olivia O Silsby, Kailee A Sowers, Dillanie Sumanthiran, Victoria E Welch, Karl S. Rosengren
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0231840

Commercial integrated crop-livestock systems achieve comparable crop yields to specialized production systems: A meta-analysis
Cited by: 37
Author(s): Caitlin A. Peterson, Leonardo Deiss, Amélie C. M. Gaudin
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1008780

Using prior information from humans to prioritize genes and gene-associated variants for complex traits in livestock
Cited by: 10
Author(s): Biaty Raymond, Loïc Yengo, Roy Costilla, C. Schrooten, A.C. Bouwman, Ben J. Hayes, R.F. Veerkamp, Peter M. Visscher
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0226056

Activation of GPR56, a novel adhesion GPCR, is necessary for nuclear androgen receptor signaling in prostate cells
Cited by: 10
Author(s): Julie Pratibha Singh, Manisha Dagar, Gunjan Dagar, Sudhir Kumar, Sudhir Rawal, Ravi Datta Sharma, Rakesh K. Tyagi, Gargi Bagchi
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.ppat.1008655

Contained Mycobacterium tuberculosis infection induces concomitant and heterologous protection
Cited by: 27
Author(s): Johannes Nemeth, Gregory S. Olson, Alissa C. Rothchild, Ana N. Jahn, Dat Mai, Fergal J. Duffy, Jared L. Delahaye, Sanjay Srivatsan, Courtney R. Plumlee, Kevin B. Urdahl, Elizabeth S. Gold, Alan Aderem, A. Diercks
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0231724

Novel insights into serodiagnosis and epidemiology of Erysipelothrix rhusiopathiae, a newly recognized pathogen in muskoxen (Ovibos moschatus)
Cited by: 14
Author(s): Fabien Mavrot, Karin Orsel, Wendy Hutchins, Layne G. Adams, Kimberlee B. Beckmen, John E. Blake, Sylvia Checkley, Tracy Davison, Juliette Di Francesco, Brett Elkin, Lisa‐Marie Leclerc, Angela Schneider, Matilde Tomaselli, Susan Kutz
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.ppat.1008560

Repertoire characterization and validation of gB-specific human IgGs directly cloned from humanized mice vaccinated with dendritic cells and protected against HCMV
Cited by: 13
Author(s): Sebastian J. Theobald, Christoph Kreer, Sahamoddin Khailaie, Agnes Bonifacius, Britta Eiz‐Vesper, Constança Figueiredo, Michael Mach, Marija Backović, Matthias Ballmaier, Johannes Koenig, Henning Olbrich, Andréas Schneider, Valery Volk, Simon Danisch, Lutz Gieselmann, Meryem S. Ercanoglu, Martin Messerle, Constantin von Kaisenberg, Torsten Witte, Frank Klawonn, Michael Meyer–Hermann, Florian Klein, Renata Stripecke
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0253611

Identification of novel and rare variants associated with handgrip strength using whole genome sequence data from the NHLBI Trans-Omics in Precision Medicine (TOPMed) Program
Cited by: 4
Author(s): Chloé Sarnowski, Han Chen, Mary L. Biggs, Sylvia Wassertheil‐Smoller, Jan Bressler, Marguerite R. Irvin, Kathleen A. Ryan, David Karasik, Donna K. Arnett, L. Adrienne Cupples, David W. Fardo, Stephanie M. Gogarten, Benjamin D. Heavner, Deepti Jain, Hyun Min Kang, Charles Kooperberg, Arch G. Mainous, Braxton D. Mitchell, Alanna C. Morrison, Jeffrey R. O’Connell, Bruce M. Psaty, Kenneth Rice, Albert V. Smith, Ramachandran S. Vasan, B. Gwen Windham, Douglas P. Kiel, Joanne M. Murabito, Kathryn L. Lunetta, TOPMed Longevity
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0256133

Can Menzerath’s law be a criterion of complexity in communication?
Cited by: 6
Author(s): Iván G. Torre, Łukasz Dębowski, Antoni Hernández-Fernández
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0239781

A theoretical morphological model for quantitative description of the three-dimensional floral morphology in water lily (Nymphaea)
Cited by: 1
Author(s): Shiryu Kirié, Hideo Iwasaki, Koji Noshita, Hiroyoshi Iwata
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.ppat.1008621

CD11cHi monocyte-derived macrophages are a major cellular compartment infected by Mycobacterium tuberculosis
Cited by: 30
Author(s): Jin‐Hee Lee, Shayla Boyce, Jennifer Powers, Christina E. Baer, Christopher M. Sassetti, Samuel M. Behar
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0239528

Regulatory and evolutionary adaptation of yeast to acute lethal ethanol stress
Cited by: 9
Author(s): Jiping Yang, Saeed Tavazoie
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0249033

Effectiveness of a school-based programme of animal-assisted humane education in Hong Kong for the promotion of social and emotional learning: A quasi-experimental pilot study
Cited by: 8
Author(s): Joe Ngai, Rose Yu, Kathy Ka Ying CHAU, Ping Wah Wong
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.ppat.1008736

Recognition of a highly conserved glycoprotein B epitope by a bivalent antibody neutralizing HCMV at a post-attachment step
Cited by: 14
Author(s): Xiaohua Ye, Hang Su, Daniel Wrapp, Daniel C. Freed, Fengsheng Li, Zihao Yuan, Aimin Tang, Leike Li, Zhiqiang Ku, Wei Xiong, Dabbu Kumar Jaijyan, Hua Zhu, Dai Wang, Jason S. McLellan, Ningyan Zhang, Tong-Ming Fu, Zhiqiang An
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pgen.1008965

Replication of the Salmonella Genomic Island 1 (SGI1) triggered by helper IncC conjugative plasmids promotes incompatibility and plasmid loss
Cited by: 18
Author(s): Kévin Huguet, Nicolas Rivard, Daniel Garneau, Jason Palanee, Vincent Burrus
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0247041

16S rRNA gene sequencing of rectal swab in patients affected by COVID-19
Cited by: 32
Author(s): Antonio Mazzarelli, Maria Letizia Giancola, Anna Farina, Luisa Marchioni, Martina Rueca, Cesare Ernesto Maria Gruber, Barbara Bartolini, Tommaso Ascoli Bartoli, Gaetano Maffongelli, Maria Rosaria Capobianchi, Giuseppe Ippolito, Antonino Di, Emanuele Nicastri, Valerio Pazienza
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0239625

Autophagy mitigates ethanol-induced mitochondrial dysfunction and oxidative stress in esophageal keratinocytes
Cited by: 14
Author(s): Prasanna M. Chandramouleeswaran, Manti Guha, Masataka Shimonosono, Kelly A. Whelan, Hirofumi Maekawa, Uma M. Sachdeva, Gordon Ruthel, Sarmistha Mukherjee, Noah Engel, Michael V. Gonzalez, James Garifallou, Shinya Ohashi, Andres J. Klein‐Szanto, Clementina Mesaros, Ian A. Blair, Renata Pellegrino da Silva, Hákon Hákonarson, Eishi Noguchi, Joseph A. Baur, Hiroshi Nakagawa
Software Mentions: 3
Published: about 4 years ago

Projects: pypi: PACE

Papers Mentioning PACE 13,779