10.1371/journal.pone.0227530

Soil solution in Swiss forest stands: A 20 year's time series
Cited by: 11
Author(s): Sabine Braun, Simon Tresch, Sabine Augustin
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0231925

Determinants and constraints of feather growth
Cited by: 10
Author(s): Lukas Jenni, Kathrin Ganz, Pietro Milanesi, Raffael Winkler
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0242061

List-wise learning to rank biomedical question-answer pairs with deep ranking recursive autoencoders
Cited by: 4
Author(s): Yan Yan, Bowen Zhang, Xufeng Li, Zhenhan Liu
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pgen.1008908

An expanded cell wall damage signaling network is comprised of the transcription factors Rlm1 and Sko1 in Candida albicans
Cited by: 19
Author(s): Marienela Y. Heredia, Mélanie Ikeh, Deepika Gunasekaran, Karen A. Conrad, Sviatlana Filimonava, Dawn H. Marotta, Clarissa J. Nobile, Jason M. Rauceo
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0238076

Deletion of Mediator 1 suppresses TGFβ signaling leading to changes in epidermal lineages and regeneration
Cited by: 3
Author(s): Yuko Oda, Thai Nguyen, Akiko Hata, Mark B. Meyer, J. Wesley Pike, Daniel Bikle
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0255675

Machine-learning model selection and parameter estimation from kinetic data of complex first-order reaction systems
Cited by: 3
Author(s): László Zimányi, Áron Sipos, Ferenc Sarlós, Rita Nagypál, Géza I. Groma
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0254730

Microbial assemblages and methanogenesis pathways impact methane production and foaming in manure deep-pit storages
Cited by: 2
Author(s): Fan Yang, Daniel S. Andersen, Steven Trabue, Angela D. Kent, Laura M. Pepple, Richard S. Gates, Adina Howe
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0231840

Commercial integrated crop-livestock systems achieve comparable crop yields to specialized production systems: A meta-analysis
Cited by: 37
Author(s): Caitlin A. Peterson, Leonardo Deiss, Amélie C. M. Gaudin
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0235263

Visualisation tools for dependent peptide searches to support the exploration of in vitro protein modifications
Cited by: 2
Author(s): George W. Preston, Liping Yang, David H. Phillips, Claudia S. Maier
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0226548

Extending the use of the World Health Organisations’ water sanitation and hygiene assessment tool for surveys in hospitals – from WASH-FIT to WASH-FAST
Cited by: 12
Author(s): Michuki Maina, Olga Tosas-Auguet, Jacob McKnight, Mathias Zosi, Grace Kimemia, Paul Mwaniki, Arabella Hayter, Margaret Montgomery, Constance Schultsz, Mike English
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0246508

Relationships between fox populations and rabies virus spread in northern Canada
Cited by: 17
Author(s): Susan A. Nadin-Davis, Emilie Falardeau, Alex Flynn, Hugh Whitney, H. Dawn Marshall
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0235741

Changes in infant non-nutritive sucking throughout a suck sample at 3-months of age
Cited by: 6
Author(s): Emily Zimmerman, Thomas Carpenito, Alaina Martens
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0245370

Determinants of the intensity of uremic pruritus in patients receiving maintenance hemodialysis: A cross-sectional study
Cited by: 11
Author(s): Jian-Hui Zhao, Qiqi Zhu, Yiwen Li, Lili Wang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0252628

Serological profiles of pan-coronavirus-specific responses in COVID-19 patients using a multiplexed electro-chemiluminescence-based testing platform
Cited by: 10
Author(s): Sidhartha Chaudhury, Jack Hutter, Jessica Bolton, Shilpa Hakre, Evelyn Mose, Amy I Wooten, William O'Connell, Joseph Hudak, Shelly J. Krebs, Janice M. Darden, Jason A. Regules, Clinton K. Murray, Kayvon Modjarrad, Paul T. Scott, Sheila A. Peel, Elke S. Bergmann‐Leitner
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0247055

Statistical meta-analysis to investigate the association between the Interleukin-6 (IL-6) gene polymorphisms and cancer risk
Cited by: 16
Author(s): Md. Harun-Or-Roshid, Md. Borqat Ali, Jesmin, Md. Nurul Haque Mollah
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0232835

Effects of arthropod inquilines on growth and reproductive effort among metacommunities of the purple pitcher plant (Sarracenia purpurea var. montana)
Cited by: 1
Author(s): Rebecca E. Hale, Elise Powell, Leila Beikmohamadi, Mara L. Alexander
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0231122

Direct and indirect effects of land-use intensity on plant communities across elevation in semi-natural grasslands
Cited by: 8
Author(s): Oksana Y. Buzhdygan, Britta Tietjen, Svitlana Rudenko, Volodymyr A. Nikorych, Jana S. Petermann
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0247378

Stool metabolome-microbiota evaluation among children and adolescents with obesity, overweight, and normal-weight using 1H NMR and 16S rRNA gene profiling
Cited by: 11
Author(s): José Diógenes Jaimes, Andrea Slavíčková, Jakub Hurych, Ondřej Cinek, Ben Nichols, Lucie Vodolánová, K. Černý, Jaroslav Havlík
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0251262

Predictors for inpatient mortality during the first wave of the SARS-CoV-2 pandemic: A retrospective analysis
Cited by: 6
Author(s): Daniel E. Sammartino, Farrukh N Jafri, Brennan Cook, Lisa La, Hye Min Kim, John Cardasis, Joshua P. Raff
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0228206

Mixed evidence for the relationship between periodontitis and Alzheimer’s disease: A bidirectional Mendelian randomization study
Cited by: 20
Author(s): Yi‐Qian Sun, Rebecca C Richmond, Yue Chen, Xiao-Mei Mai
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1008551

Aspergillus fumigatus calcium-responsive transcription factors regulate cell wall architecture promoting stress tolerance, virulence and caspofungin resistance
Cited by: 32
Author(s): Patrícia Alves de Castro, Ana Cristina Colabardini, Adriana Oliveira Manfiolli, Jéssica Chiaratto, Lilian Pereira Silva, Eliciane Cevolani Mattos, Giuseppe Palmisano, Fausto Almeida, Gabriela Félix Persinoti, Laure Nicolas Annick Ries, Laura Mellado, Marina Campos Rocha, Michael Bromley, Roberto Nascimento Silva, Gabriel Scalini de Souza, Flávio Vieira Loures, Iran Malavazi, Neil Andrew Brown, Gustavo H. Goldman
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0241253

CaBagE: A Cas9-based Background Elimination strategy for targeted, long-read DNA sequencing
Cited by: 16
Author(s): Amelia D. Wallace, Thomas A Sasani, Jordan Swanier, Brooke L. Gates, Jeff Greenland, Brent S. Pedersen, Katherine E. Varley, Aaron R. Quinlan
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0227189

Quantifying tourism booms and the increasing footprint in the Arctic with social media data
Cited by: 25
Author(s): Claire A. Runge, Rémi M. Daigle, Vera Helene Hausner
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0240135

Post-competition recovery strategies in elite male soccer players. Effects on performance: A systematic review and meta-analysis
Cited by: 18
Author(s): Albert Altarriba-Bartés, Javier Peña, Jordi Vicens-Bordas, Raimon Milà-Villaroel, Julio Calleja-González
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0223031

Lipidomics analysis of juveniles’ blue mussels (Mytilus edulis L. 1758), a key economic and ecological species
Cited by: 13
Author(s): Vincenzo Alessandro Laudicella, Christine Beveridge, Stefano Carboni, Sofia C. Franco, Mary K. Doherty, Nina Long, Elaine Mitchell, Michele S. Stanley, Phillip D. Whitfield, Adam D. Hughes
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0228687

Pre-analytical error for three point of care venous blood testing platforms in acute ambulatory settings: A mixed methods service evaluation
Cited by: 3
Author(s): Thomas R Fanshawe, Margaret Glogowska, George Edwards, P Turner, Ian Smith, Rosie Steele, Caroline Croxson, John M. Bowen, Gail Hayward
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0243735

Prevalence of respiratory viruses using polymerase chain reaction in children with wheezing, a systematic review and meta–analysis
Cited by: 3
Author(s): Cyprien Kengne‐Nde, Sébastien Kenmoe, Abdou Fatawou Modiyinji, Richard Njouom
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0237894

Emerging fungal pathogen of an invasive grass: Implications for competition with native plant species
Cited by: 4
Author(s): Amy E. Kendig, Vida J. Svahnström, Ashish Adhikari, Philip F. Harmon, S. Luke Flory
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0256657

Microbiota composition and mucosal immunity in patients with asymptomatic diverticulosis and controls
Cited by: 10
Author(s): Tessel Meike van Rossen, Rogier E. Ooijevaar, J. Kuyvenhoven, Anat Eck, Herman Bril, René Buijsman, Marja A. Boermeester, H. B. A. C. Stockmann, Niels de Korte, Andries E. Budding
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0228108

Community-intrinsic properties enhance keratin degradation from bacterial consortia
Cited by: 15
Author(s): Poonam Nasipuri, Jakob Herschend, Asker Brejnrod, Jonas Stenløkke Madsen, Roall Espersen, Birte Svensson, Mette Burmølle, Samuel Jacquiod, Søren J. Sørensen
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0237950

Individual response to antidepressants for depression in adults-a meta-analysis and simulation study
Cited by: 10
Author(s): Klaus Munkholm, Stephanie Winkelbeiner, Philipp Homan
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0248320

Plant structural diversity alters sediment retention on and underneath herbaceous vegetation in a flume experiment
Cited by: 6
Author(s): Lena Kretz, Katinka Koll, Carolin Seele‐Dilbat, Fons van der Plas, Alexandra Weigelt, Christian Wirth
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0232736

Using species distribution models to locate the potential cradles of the allopolyploid Gypsophila bermejoi G. López (Caryophyllaceae)
Cited by: 2
Author(s): Miguel de Luis, Julio Álvarez-Jiménez, Francisco Javier Rejos, Carmen Bartolomé
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0253264

Dietary vitamin E reaches the mitochondria in the flight muscle of zebra finches but only if they exercise
Cited by: 6
Author(s): Clara Cooper-Mullin, Wales A. Carter, Ronald S. Amato, David W. Podlesak, Scott R. McWilliams
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0247657

Behavioural and antennal responses of Aedes aegypti (l.) (Diptera: Culicidae) gravid females to chemical cues from conspecific larvae
Cited by: 10
Author(s): Antoine Boullis, Margaux Mulatier, Christelle Delannay, Lyza Héry, François Verheggen, Anubis Vega-Rúa
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0253341

Metaplot: A new Stata module for assessing heterogeneity in a meta-analysis
Cited by: 5
Author(s): Jalal Poorolajal, Shahla Noornejad
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0254089

Cervical cancer risk and access: Utilizing three statistical tools to assess Haitian women in South Florida
Cited by: 2
Author(s): R Moïse, Raymond R. Balise, Camille Ragin, Erin Kobetz
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1009512

The actin nucleation factors JMY and WHAMM enable a rapid Arp2/3 complex-mediated intrinsic pathway of apoptosis
Cited by: 11
Author(s): Virginia L King, Nathan K. Leclair, Alyssa Coulter, Kenneth Campellone
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0237351

Empirical vs. light-use efficiency modelling for estimating carbon fluxes in a mid-succession ecosystem developed on abandoned karst grassland
Cited by: 5
Author(s): Koffi Dodji Noumonvi, Mitja Ferlan
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pntd.0009719

Maxicircle architecture and evolutionary insights into Trypanosoma cruzi complex
Cited by: 6
Author(s): Luisa Berná, Gonzalo Greif, Sebastián Pita, Paula Faral-Tello, Florencia Díaz-Viraqué, Rita de Cássia Moreira de Souza, Gustavo Adolfo Vallejo, Fernando Álvarez-Valín, Carlos Robello
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1008595

Super-resolution imaging of RAD51 and DMC1 in DNA repair foci reveals dynamic distribution patterns in meiotic prophase
Cited by: 22
Author(s): Johan A. Slotman, Maarten W. Paul, Fabrizia Carofiglio, H. Martijn de Gruiter, Tessa Vergroesen, Lieke Koornneef, Wiggert A. van Cappellen, Adriaan B. Houtsmuller, Willy M. Baarends
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0235763

Comparative transcriptome analysis uncovers different heat stress responses in heat-resistant and heat-sensitive jujube cultivars
Cited by: 17
Author(s): Juan Jin, Lei Yang, Dingyu Fan, Xuxin Liu, Qing Hao
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pgen.1008452

Transcriptional and genomic parallels between the monoxenous parasite Herpetomonas muscarum and Leishmania
Cited by: 12
Author(s): Megan A. Sloan, Karen Brooks, Thomas D. Otto, Mandy Sanders, James A. Cotton, Petros Ligoxygakis
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0250654

Potential G-quadruplexes and i-Motifs in the SARS-CoV-2
Cited by: 25
Author(s): Efres Belmonte-Reche, Israel Serrano‐Chacón, Carlos González, Juan Gallo, Manuel Bañobre‐López
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0237919

The validity and reliability of observational assessment tools available to measure fundamental movement skills in school-age children: A systematic review
Cited by: 29
Author(s): Lucy H. Eddy, Daniel D. Bingham, Kirsty Crossley, Nishaat F. Shahid, Marsha Ellingham-Khan, Ava Otteslev, Natalie S. Figueredo, Mark Mon-Williams, Liam J. B. Hill
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pgen.1009557

Copy number signature analysis tool and its application in prostate cancer reveals distinct mutational processes and clinical outcomes
Cited by: 51
Author(s): S Wang, Huimin Li, Mei Song, Ziyu Tao, Tao Wu, Zaoke He, Xiangyu Zhao, Kai Wu, Xue Song Liu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0255738

Adenomatous Polyposis Coli loss controls cell cycle regulators and response to paclitaxel in MDA-MB-157 metaplastic breast cancer cells
Cited by: 3
Author(s): Emily Astarita, Sara Maloney, Camden A. Hoover, Bronwyn J. Berkeley, Monica K. VanKlompenberg, T. Murlidharan Nair, Jenifer R. Prosperi
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0240841

Risk screening methods for extreme heat: Implications for equity-oriented adaptation
Cited by: 3
Author(s): Lynée L. Turek-Hankins, Miyuki Hino, Katharine J. Mach
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0241057

Diversity and structural differences of bacterial microbial communities in rhizocompartments of desert leguminous plants
Cited by: 8
Author(s): Ziyuan Zhou, Minghan Yu, Guodong Ding, Guanglei Gao, Yingying He
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0254827

Habitat selection by wolves and mountain lions during summer in western Montana
Cited by: 5
Author(s): Collin J. Peterson, Michael S. Mitchell, Nicholas J. DeCesare, Chad J. Bishop, Sarah N. Sells
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0238071

Research data sharing in the Australian national science agency: Understanding the relative importance of organisational, disciplinary and domain-specific influences
Cited by: 4
Author(s): Claire M. Mason, Paul Box, Shanae M. Burns
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pntd.0008945

Multi-locus genotyping reveals established endemicity of a geographically distinct Plasmodium vivax population in Mauritania, West Africa
Cited by: 7
Author(s): Hampaté Bâ, Sarah Auburn, Christopher G Jacob, Sónia Gonçalves, Craig W. Duffy, Lindsay B. Stewart, Ric N. Price, Yacine Boubou Deh, M. Diallo, Abderahmane Tandia, Dominic Kwiatkowski, David J. Conway
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0225623

Is un stylo sharper than une épée? Investigating the interaction of sound symbolism and grammatical gender in English and French speakers
Cited by: 2
Author(s): David M. Sidhu, Penny M. Pexman, Jean Saint‐Aubin
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0245222

Early Holocene Scandinavian foragers on a journey to affluence: Mesolithic fish exploitation, seasonal abundance and storage investigated through strontium isotope ratios by laser ablation (LA‐MC-ICP‐MS)
Cited by: 9
Author(s): Adam Boëthius, Mathilda Kjällquist, Melanie Kielman‐Schmitt, Torbjörn Ahlström, Lars Larsson
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1008537

Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation
Cited by: 33
Author(s): Gregory R. Keele, Bryan C. Quach, Jennifer W. Israel, Grace A. Chappell, Lauren Lewis, Alexias Safi, Jeremy M. Simon, Paul Cotney, Gregory E. Crawford, William Valdar, Ivan Rusyn, Terrence S. Furey
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1009302

UV-exposure, endogenous DNA damage, and DNA replication errors shape the spectra of genome changes in human skin
Cited by: 24
Author(s): Natalie Saini, Camille K. Giacobone, Leszek J. Klimczak, Brian N. Papas, Adam Burkholder, Jianliang Li, David C. Fargo, Re Bai, Kevin Gerrish, Cynthia L. Innes, Shepherd H. Schurman, Dmitry A. Gordenin
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0229294

Catecholaminergic modulation of the cost of cognitive control in healthy older adults
Cited by: 9
Author(s): Monja I. Froböse, Andrew Westbrook, Mirjam Bloemendaal, Esther Aarts, Roshan Cools
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0237001

Highs and lows: Genetic susceptibility to daily events
Cited by: 9
Author(s): Maurizio Sicorello, Linda Dieckmann, Dirk Moser, Vanessa Lux, Maike Luhmann, A. Neubauer, Wolff Schlotz, Robert Kumsta
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0228188

Precision medicine and actionable alterations in lung cancer: A single institution experience
Cited by: 7
Author(s): Isa Mambetsariev, Yingyu Wang, Chen Chen, Sorena Nadaf, Rebecca Pharaon, Jeremy Fricke, Idoroenyi Amanam, Arya Amini, Andrea Bild, Peiguo Chu, Loretta Erhunmwunsee, Jae Kim, Janet Munu, Raju Pillai, Dan J. Raz, Sagus Sampath, Lalitkumar K. Vora, Fang Qiu, Lynette M. Smith, Surinder K. Batra, Erminia Massarelli, Marianna Koczywas, Karen L. Reckamp, Ravi Salgia
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0245064

Racial and geographic variation in effects of maternal education and neighborhood-level measures of socioeconomic status on gestational age at birth: Findings from the ECHO cohorts
Cited by: 19
Author(s): Anne L. Dunlop, Alicynne Glazier Essalmi, Lyndsay Alvalos, Carrie V. Breton, Carlos A. Camargo, Whitney Cowell, Dana Dabelea, Stephen R. Dager, Cristiane S. Duarte, Amy J. Elliott, Raina N. Fichorova, James E. Gern, Monique M. Hedderson, Elizabeth Hom Thepaksorn, Kathi Huddleston, Margaret R. Karagas, Ken Kleinman, Leslie D. Leve, Ximin Li, Yijun Li, Augusto A. Litonjua, Yunin Ludena-Rodriguez, Juliette C. Madan, Julio Mateus Nino, Cynthia McEvoy, Thomas G. O’Connor, Amy Padula, Nigel Paneth, Frederica P. Perera, Sheela Sathyanarayana, Rebecca J. Schmidt, Robert T. Schultz, Jessica Snowden, Joseph B. Stanford, Leonardo Trasande, Heather E. Volk, William Wheaton, Rosalind J. Wright, Monica McGrath
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0255420

Knowledge, attitude and practices of community pharmacists regarding COVID-19: A paper-based survey in Vietnam
Cited by: 12
Author(s): Huong Thi Thanh Nguyen, Dai Xuan Dinh, Văn Minh Nguyễn
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0253741

Transcriptome and proteome of the corm, leaf and flower of Hypoxis hemerocallidea (African potato)
Cited by: 0
Author(s): Mihai-Silviu Tomescu, Selisha A. Sooklal, Thuto Ntsowe, Previn Naicker, Barbara Darnhofer, Robert H. Archer, Stoyan Stoychev, Dirk Swanevelder, Ruth Birner‐Grünberger, Karl Rumbold
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0237108

Comparison of microbiota in the cloaca, colon, and magnum of layer chicken
Cited by: 10
Author(s): Seo-Jin Lee, Seongwoo Cho, Tae-Min La, Hong-Jae Lee, Joong‐Bok Lee, Seung‐Yong Park, Chang‐Seon Song, In‐Soo Choi
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pntd.0008655

Practical and effective diagnosis of animal anthrax in endemic low-resource settings
Cited by: 14
Author(s): Olubunmi Rhoda Aminu, Tiziana Lembo, Ruth N. Zadoks, Roman Biek, Suzanna Lewis, Ireen Kiwelu, Blandina T Mmbaga, Deogratius Mshanga, Gabriel Shirima, Matt Denwood, Taya Forde
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0244643

Characterization of cerebrospinal fluid (CSF) microbiota from patients with CSF shunt infection and reinfection using high throughput sequencing of 16S ribosomal RNAgenes
Cited by: 5
Author(s): Kathryn B. Whitlock, Charles E. Pope, Paul Hodor, Lucas R. Hoffman, David L. Limbrick, Patrick J. McDonald, Jason S. Hauptman, Jeffrey G. Ojemann, Tamara D. Simon
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0241209

Pediatric emergency care in a low-income country: Characteristics and outcomes of presentations to a tertiary-care emergency department in Mozambique
Cited by: 6
Author(s): Valentina Brugnolaro, Laura Nai Fovino, Serena Calgaro, Giovanni Putoto, Arlindo Muhelo, Darío Gregori, Danila Azzolina, Silvia Bressan, Liviana Da Dalt
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0236548

Techno-functional and 3D shape analysis applied for investigating the variability of backed tools in the Late Middle Paleolithic of Central Europe
Cited by: 16
Author(s): Davide Delpiano, Thorsten Uthmeier
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0244408

Genome-wide association study and pathway analysis identify NTRK2 as a novel candidate gene for litter size in sheep
Cited by: 13
Author(s): Seyed Mehdi Esmaeili-Fard, Mohsen Gholizadeh, Seyed Hasan Hafezian, Rostam Abdollahi-Arpanahi
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0229531

Frailty predicts surgical complications after kidney transplantation. A propensity score matched study
Cited by: 19
Author(s): Milena dos Santos Mantovani, Nyara Coelho de Carvalho, Thomáz Archangelo, Luís Gustavo Modelli de Andrade, Sebastião Pires Ferreira Filho, Ricardo de Souza Cavalcante, Paulo Roberto Kawano, Sílvia Justina Papini, Nara Aline Costa, Ricardo Augusto Monteiro de Barros Almeida
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0255472

Predictors for one-year outcomes of cardiorespiratory fitness and cardiovascular risk factor control after cardiac rehabilitation in elderly patients: The EU-CaRE study
Cited by: 2
Author(s): Prisca Eser, Thimo Marcin, Eva Prescott, Leonie F Prins, Evelien Kolkman, Wendy Bruins, Astrid E van der Velde, Carlos Peña-Gil, Marie‐Christine Iliou, Diego Ardissino, Uwe Zeymer, Esther P. Meindersma, Arnoud. W. J. Van’tHof, Ed P de Kluiver, Matthias Wilhelm
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0233627

Development syndromes in New World temperate and tropical songbirds
Cited by: 6
Author(s): Suzanne H. Austin, W. Douglas Robinson, Tara Rodden Robinson, Vincenzo A. Ellis, Robert E. Ricklefs
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pntd.0007640

Regulation of hepatic microRNAs in response to early stage Echinococcus multilocularis egg infection in C57BL/6 mice
Cited by: 11
Author(s): Ghalia Boubaker, Sebastian Strempel, Andrew Hemphill, Norbert Müller, Junhua Wang, Bruno Gottstein, Markus Spiliotis
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0241367

DNA methylation in blood—Potential to provide new insights into cell biology
Cited by: 3
Author(s): Donia Macartney-Coxson, Alanna M. Cameron, Jane Clapham, Miles C. Benton
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0256729

Sociodemographic risk factors of under-five stunting in Bangladesh: Assessing the role of interactions using a machine learning method
Cited by: 4
Author(s): Mohaimen Mansur, Awan Afiaz, Md. Saddam Hossain
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0256048

Comparison of enteric methane yield and diversity of ruminal methanogens in cattle and buffaloes fed on the same diet
Cited by: 14
Author(s): P. K. Malik, Shraddha Trivedi, A. Mohapatra, Atul P. Kolte, Veerasamy Sejian, Raghavendra Bhatta, Husna Abdul Rahman
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0243911

The pharmacodynamic and differential gene expression analysis of PPAR α/δ agonist GFT505 in CDAHFD-induced NASH model
Cited by: 12
Author(s): Linfu Liu, Chuang Liu, Menglong Zhao, Qianru Zhang, Ying Lu, Ping Liu, Hua Yang, Jinliang Yang, Xiaoxin Chen, Yuqin Yao
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0256353

Uncovering the genomic and metagenomic research potential in old ethanol-preserved snakes
Cited by: 6
Author(s): Claus M. Zacho, Martina Abenhus Bager, Ashot Margaryan, Peter Gravlund, Anders Galatius, Arne Redsted Rasmussen, Morten E. Allentoft
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pntd.0008056

Machine learning and dengue forecasting: Comparing random forests and artificial neural networks for predicting dengue burden at national and sub-national scales in Colombia
Cited by: 33
Author(s): Naizhuo Zhao, Katia Charland, Mabel Carabalí, Elaine O. Nsoesie, Mathieu Maheu‐Giroux, Erin E. Rees, Mengru Yuan, César García Balaguera, Gloria Jaramillo Ramirez, Kate Zinszer
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0248459

Evaluating the effect of stand properties and site conditions on the forest reflectance from Sentinel-2 time series
Cited by: 9
Author(s): Ewa Grabska, Jarosław Socha
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0250413

Exploring the relationship between maternal prenatal stress and brain structure in premature neonates
Cited by: 6
Author(s): Alexandra Lautarescu, Laila Hadaya, Michael C. Craig, Antonis Makropoulos, Dafnis Batallé, Chiara Nosarti, A. David Edwards, Serena Counsell, Suresh Victor
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0238385

Replicable simulation of distal hot water premise plumbing using convectively-mixed pipe reactors
Cited by: 3
Author(s): Maryellen Spencer, Abraham C. Cullom, William J. Rhoads, Amy Pruden, Marc Edwards
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0247630

The effect of growth rate on otolith-based discrimination of cod (Gadus morhua) ecotypes
Cited by: 2
Author(s): Einar Pétur Jónsson, Steven E. Campana, Jón Sólmundsson, Klara B. Jakobsdóttir, Hlynur Bárðarson
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0234760

PeskAAS: A near-real-time, open-source monitoring and analytics system for small-scale fisheries
Cited by: 9
Author(s): Alexander Tilley, Joctan Dos Reis Lopes, Shaun P. Wilkinson
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0243915

On transformative adaptive activation functions in neural networks for gene expression inference
Cited by: 5
Author(s): Vladimír Kunc, Jǐŕı Kléma
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0242940

Development of a minimal KASP marker panel for distinguishing genotypes in apple collections
Cited by: 7
Author(s): Mark Winfield, Amanda Burridge, Matthew Ordidge, Helen Harper, Paul Wilkinson, Daniel Thorogood, Liz Copas, Keith J. Edwards, Gary Barker
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0240474

Were domestic camelids present on the prehispanic South American agricultural frontier? An ancient DNA study
Cited by: 7
Author(s): Cinthia Carolina Abbona, Gustavo Adolfo, Jeff Johnson, Tracy Kim, Adolfo Gil, Steve Wolverton
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0253701

Exposure to dexamethasone modifies transcriptomic responses of free-living stages of Strongyloides stercoralis
Cited by: 3
Author(s): Rutchanee Rodpai, Oranuch Sanpool, Tongjit Thanchomnang, Pokkamol Laoraksawong, Lakkhana Sadaow, Patcharaporn Boonroumkaew, Arporn Wangwiwatsin, Chaisiri Wongkham, Porntip Laummaunwai, Wannaporn Ittiprasert, Paul J Brindley, Pewpan M. Intapan, Wanchai Maleewong
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.ppat.1008216

Novel RNA viruses associated with Plasmodium vivax in human malaria and Leucocytozoon parasites in avian disease
Cited by: 52
Author(s): Justine Charon, Matthew J. Grigg, John Sebastian Eden, Kim A. Piera, Hafsa Rana, Timothy William, Karrie Rose, Miles P. Davenport, Nicholas M. Anstey, Edward C. Holmes
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pntd.0007783

A peridomestic Aedes malayensis population in Singapore can transmit yellow fever virus
Cited by: 10
Author(s): Elliott F. Miot, Fabien Aubry, Stéphanie Dabo, Ian H. Mendenhall, Sébastien Marcombe, Cheong Huat Tan, Lee Ching Ng, Anna‐Bella Failloux, Julien Pompon, Paul T. Brey, Louis Lambrechts
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0253704

A hitchhiker guide to manta rays: Patterns of association between Mobula alfredi, M. birostris, their symbionts, and other fishes in the Maldives
Cited by: 9
Author(s): Aimee E Nicholson-Jack, Joanna L. Harris, Kirsty L. Ballard, Katherine Mary Elizabeth Turner, Guy M. W. Stevens
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pntd.0009106

Megacities as drivers of national outbreaks: The 2017 chikungunya outbreak in Dhaka, Bangladesh
Cited by: 14
Author(s): Ayesha S. Mahmud, Iqbal Kabir, Kenth Engø‐Monsen, Sania Tahmina, Baizid Khoorshid Riaz, Akram Hossain, Fahmida Khanom, Mujibor Rahman, Khalilur Rahman, Mehruba Sharmin, Dewan Mashrur Hossain, Shakila Yasmin, Mostafa Ahmed, Mirza Afreen Fatima Lusha, Caroline O. Buckee
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008324

The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana
Cited by: 12
Author(s): Mélody Nicolau, Nathalie Picault, Julie Descombin, Yasaman Jami‐Alahmadi, Suhua Feng, Etienne Bucher, Steven E. Jacobsen, Jean-Marc Deragon, James A. Wohlschlegel, Guillaume Moissiard
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0248625

Media and social media attention to retracted articles according to Altmetric
Cited by: 20
Author(s): Stylianos Serghiou, Rebecca M. Marton, John P. A. Ioannidis
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.ppat.1008337

Comprehensive analysis of iron utilization by Mycobacterium tuberculosis
Cited by: 52
Author(s): Lei Zhang, R. Curtis Hendrickson, Virginia Meikle, Elliot J. Lefkowitz, Thomas R. Ioerger, Michael Niederweis
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0239528

Regulatory and evolutionary adaptation of yeast to acute lethal ethanol stress
Cited by: 9
Author(s): Jiping Yang, Saeed Tavazoie
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.ppat.1008394

Structural and functional insights into a novel two-component endolysin encoded by a single gene in Enterococcus faecalis phage
Cited by: 21
Author(s): Biao Zhou, Xiangkai Zhen, Huan Zhou, Feiyang Zhao, Chao Fan, Vanja Perčulija, Yigang Tong, Zhiqiang Mi, Songying Ouyang
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0237087

Sequencing and assembly of the Egyptian buffalo genome
Cited by: 10
Author(s): Dina A. El-Khishin, Amr Ageez, Mohamed E. Saad, Amr Ibrahim, Moustafa Shokrof, L. Hassan, Mohamed Abouelhoda
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0227113

Indicators to distinguish symptom accentuators from symptom producers in individuals with a diagnosed adjustment disorder: A pilot study on inconsistency subtypes using SIMS and MMPI-2-RF
Cited by: 23
Author(s): Cristina Mazza, Graziella Orrù, Franco Burla, Merylin Monaro, Stefano Ferracuti, Marco Colasanti, Paolo Roma
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0251637

Spatial and temporal variation in the occurrence of bottlenose dolphins in the Chesapeake Bay, USA, using citizen science sighting data
Cited by: 2
Author(s): Lauren K. Rodriguez, Amber D. Fandel, Benjamin R. Colbert, Jamie C. Testa, Helen Bailey
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0231916

Knowledge Beacons: Web services for data harvesting of distributed biomedical knowledge
Cited by: 1
Author(s): Lance M. Hannestad, Vlado Dančík, Meera Godden, Imelda W. Suen, Kenneth C. Huellas-Bruskiewicz, Benjamin M. Good, Christopher J. Mungall, Richard Bruskiewich
Software Mentions: 3
Published: over 5 years ago