Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: NanoCount

https://packages.ecosyste.ms/registries/pypi.org/packages/NanoCount

NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads
24 versions
Latest release: almost 3 years ago
50 downloads last month

Papers Mentioning NanoCount 2

10.3389/fgene.2020.00211

MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets
Cited by: 35
Author(s): Luca Cozzuto, Huanle Liu, Leszek P. Pryszcz, Toni Hermoso Pulido, Anna Delgado-Tejedor, Julia Ponomarenko, Eva María Novoa
Software Mentions: 6
Published: over 4 years ago

10.3389/fmolb.2021.711733

Isoform Age - Splice Isoform Profiling Using Long-Read Technologies
Cited by: 25
Author(s): Ricardo De Paoli-Iseppi, Josie Gleeson, Michael B. Clark
Software Mentions: 2
Published: about 3 years ago