Projects: pypi: NanoCount
https://packages.ecosyste.ms/registries/pypi.org/packages/NanoCount
NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads
24 versions
Latest release: over 4 years ago
50 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
Adrien Leger (user)
Research scientist at Oxford Nanopore Technologies Academic
Research scientist at Oxford Nanopore Technologies Academic
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Academic repository owner
Repository owned by academic institution -
+12
Science terms in README
6 scientific terms found in README -
+10
DOI references
1 DOI references found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning NanoCount 2
10.3389/fgene.2020.00211
MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing DatasetsCited by: 35
Author(s): Luca Cozzuto, Huanle Liu, Leszek P. Pryszcz, Toni Hermoso Pulido, Anna Delgado-Tejedor, Julia Ponomarenko, Eva María Novoa
Software Mentions: 6
Published: about 6 years ago
10.3389/fmolb.2021.711733
Isoform Age - Splice Isoform Profiling Using Long-Read TechnologiesCited by: 25
Author(s): Ricardo De Paoli-Iseppi, Josie Gleeson, Michael B. Clark
Software Mentions: 2
Published: over 4 years ago