pypi: Flask | Projects | Ecosyste.ms: Papers

10.1186/s13742-016-0147-0

2015 Brainhack Proceedings
Cited by: 6
Author(s): R. Cameron Craddock, Pierre Bellec, Daniel S. Margules, B. Nolan Nichols, Jörg P. Pfannmöller, AmanPreet Badhwar, David Kennedy, Jean‐Baptiste Poline, Roberto Toro, Ben Cipollini, Ariel Rokem, Daniel J. Clark, Krzysztof J. Gorgolewski, Daniel J. Clark, Samir Das, Cécile Madjar, Ayan Sengupta, Zia Mohades, Sébastien Déry, Weiran Deng, Eric Earl, Damion V. Demeter, Kate Mills, Glad Mihai, Luka Ružić, Nick Ketz, Andrew E. Reineberg, Marianne C. Reddan, Anne-Lise Goddings, Javier Gonzalez‐Castillo, Caroline Froehlich, Gil Dekel, Daniel S. Margulies, Ben D. Fulcher, Tristan Glatard, Reza Adalat, Natacha Beck, R. Bernard, Najmeh Khalili-Mahani, Pierre Rioux, Marc-Étienne Rousseau, Alan C. Evans, Yaroslav Halchenko, Matteo Visconti di Oleggio Castello, Raúl Hernández-Pérez, Edgar Abarca Morales, Laura V. Cuaya, Kaori Ito, Sook‐Lei Liew, Hans J. Johnson, Erik Kan, Julia Anglin, Michael R. Borich, Neda Jahanshad, Paul Thompson, Marcel Falkiewicz, Julia M. Huntenburg, David O’Connor, Michael P. Milham, Ramon Fraga Pereira, Anibal Sólon Heinsfeld, Alexandre R. Franco, Augusto Buchweitz, Felipe Meneguzzi, Rickson C. Mesquita, Luis C. T. Herrera, Daniela Dentico, Vanessa Sochat, Julio E. Villalon‐Reina, Eleftherios Garyfallidis
Software Mentions: 14
Published: about 8 years ago

10.1186/s12859-016-1321-1

GEN3VA: aggregation and analysis of gene expression signatures from related studies
Cited by: 17
Author(s): Gregory W. Gundersen, Kathleen M. Jagodnik, Holly Woodland, Nicholas F. Fernandez, Kevin Sani, Anders B. Dohlman, Peter M.U. Ung, Caroline D. Monteiro, Avner Schlessinger, Avi Ma’ayan
Software Mentions: 9
Published: about 8 years ago

10.12688/wellcomeopenres.14306.1

CoverView: a sequence quality evaluation tool for next generation sequencing data
Cited by: 7
Author(s): Márton Münz, Shazia Mahamdallie, Shawn Yost, Andrew Rimmer, Emma Poyastro-Pearson, Ann Strydom, Sheila Seal, Elise Ruark, Nazneen Rahman
Software Mentions: 8
Published: over 6 years ago

10.1186/s12859-021-04275-5

VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments
Cited by: 2
Author(s): Yingbo Cui, Zihang Wang, Johannes Köster, Xiangke Liao, Shaoliang Peng, Tao Tang, Chun Huang, Chi Yang
Software Mentions: 8
Published: over 3 years ago

10.1186/s13321-020-00481-0

ChemSpectra: a web-based spectra editor for analytical data
Cited by: 8
Author(s): Yu‐Chieh Huang, Pierre Tremouilhac, An Nguyẽ̂n, Nicole Jung, Stefan Bräse
Software Mentions: 7
Published: almost 4 years ago

10.1109/JTEHM.2020.2989768

Integrated Development Environment for EEG-Driven Cognitive-Neuropsychological Research
Cited by: 6
Author(s): Shoham Jacobsen, Oded Meiron, David Yoel Salomon, Nir Kraizler, Hagai Factor, Efraim Jaul, Elishai Ezra Tsur
Software Mentions: 7
Published: almost 5 years ago

10.3390/s20051473

Connected Bike-smart IoT-based Cycling Training Solution
Cited by: 4
Author(s): George Catargiu, Eva‐Henrietta Dulf, Liviu Miclea
Software Mentions: 7
Published: almost 5 years ago

10.1016/j.dib.2020.105767

BEHACOM - a dataset modelling users’ behaviour in computers
Cited by: 2
Author(s): Pedro Miguel Sánchez Sánchez, José María Jorquera Valero, Mattia Zago, Alberto Huertas Celdrán, Lorenzo Fernández Maimó, Eduardo López Bernal, Sergio López Bernal, Javier Martínez Valverde, Pantaleone Nespoli, Javier Pastor-Galindo, Ángel Luis Perales Gómez, Manuel Gil Pérez, Gregorio Martínez Pérez
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pcbi.1008277

EventEpi—A natural language processing framework for event-based surveillance
Cited by: 11
Author(s): Auss Abbood, Alexander Ullrich, Rüdiger Busche, Stéphane Ghozzi
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pcbi.1008326

Using interactive digital notebooks for bioscience and informatics education
Cited by: 10
Author(s): Alan Davies, Frances Hooley, Peter Causey-Freeman, Iliada Eleftheriou, Georgina Moulton
Software Mentions: 6
Published: about 4 years ago

10.1038/sdata.2017.151

Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data
Cited by: 159
Author(s): Nicolas Fernandez, Gregory W. Gundersen, Adeeb Rahman, Mark L. Grimes, Klarisa Rikova, Peter Hornbeck, Avi Ma’ayan
Software Mentions: 6
Published: about 7 years ago

10.1016/j.patter.2021.100213

Appyters: Turning Jupyter Notebooks into data-driven web apps
Cited by: 51
Author(s): Daniel J. B. Clarke, Minji Jeon, Daniel J. Stein, Nicole Moiseyev, Eryk Kropiwnicki, Charles Dai, Zhuorui Xie, Megan L. Wojciechowicz, Skylar Litz, Jason Hom, John Erol Evangelista, Lucas Goldman, Serena Zhang, Christine Yoon, Tahmid Ahamed, Samantha Bhuiyan, Minxuan Cheng, Julie Karam, Kathleen M. Jagodnik, Ingrid Shu, Alexander Lachmann, Sam Ayling, Sherry L. Jenkins, Avi Ma’ayan
Software Mentions: 6
Published: almost 4 years ago

10.21105/joss.02410

Viime: Visualization and Integration of Metabolomics Experiments
Cited by: 6
Author(s): Roni Choudhury, Jon Beezley, Brandon Davis, Jared Tomeck, Samuel Gratzl, Lilian Golzarri‐Arroyo, Jun Wan, Daniel Raftery, Jeff Baumes, Thomas M. O’Connell
Software Mentions: 6
Published: about 4 years ago

10.1002/pro.3783

The Dundee Resource for Sequence Analysis and Structure Prediction
Cited by: 11
Author(s): Stuart A. MacGowan, Fábio Madeira, Thiago Britto‐Borges, Mateusz Warowny, Alexey Drozdetskiy, James B. Procter, Geoffrey J. Barton
Software Mentions: 5
Published: about 5 years ago

10.3390/ijms21197281

SPOTONE: Hot Spots on Protein Complexes with Extremely Randomized Trees via Sequence-Only Features
Cited by: 10
Author(s): António Preto, Irina S. Moreira
Software Mentions: 5
Published: about 4 years ago

10.1093/gigascience/giy109

Fractalis: a scalable open-source service for platform-independent interactive visual analysis of biomedical data
Cited by: 3
Author(s): Sascha Herzinger, Valentin Grouès, Wei Gu, Venkata Satagopam, Peter Banda, Christophe Trefois, Reinhard Schneider
Software Mentions: 5
Published: over 6 years ago

10.3390/s20020569

Crowd of Oz: A Crowd-Powered Social Robotics System for Stress Management
Cited by: 18
Author(s): Tahir Abbas, Vassilis-Javed Khan, Ujwal Gadiraju, Emilia Barakova, Panos Markopoulos
Software Mentions: 5
Published: almost 5 years ago

10.15252/msb.20199005

Combinatorial prediction of marker panels from single‐cell transcriptomic data
Cited by: 54
Author(s): Conor P. Delaney, Alexandra Schnell, Louis Cammarata, Aaron Yao-Smith, Aviv Regev, Vijay K. Kuchroo, Meromit Singer
Software Mentions: 5
Published: about 5 years ago

10.1093/gigascience/giab052

ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture
Cited by: 16
Author(s): Nicolás Gaggion, Federico Ariel, Vladimir Daric, Éric Lambert, Simon Legendre, Thomas Roulé, Alejandra Camoirano, Diego H. Milone, Martín Crespi, Thomas Blein, Enzo Ferrante
Software Mentions: 5
Published: over 3 years ago

10.3389/fninf.2014.00055

NeuronDepot: keeping your colleagues in sync by combining modern cloud storage services, the local file system, and simple web applications
Cited by: 3
Author(s): Philipp L. Rautenberg, Ajayrama Kumaraswamy, Álvaro Tejero-Cantero, Christoph Doblander, Mohammad Reza Norouzian, Kazuki Kai, Hans‐Arno Jacobsen, Hiroyuki Ai, Thomas Wachtler, Hidetoshi Ikeno
Software Mentions: 5
Published: over 10 years ago

10.3389/fpsyg.2016.00610

The Experiment Factory: Standardizing Behavioral Experiments
Cited by: 48
Author(s): Vanessa Sochat, Ian W. Eisenberg, A. Zeynep Enkavi, Jamie Li, Patrick G. Bissett, Russell A. Poldrack
Software Mentions: 5
Published: over 8 years ago

10.1093/gigascience/giz060

BSA4Yeast: Web-based quantitative trait locus linkage analysis and bulk segregant analysis of yeast sequencing data
Cited by: 3
Author(s): Zhang Zhi, Paul P. Jung, Valentin Grouès, Patrick May, Carole L. Linster, Enrico Glaab
Software Mentions: 4
Published: over 5 years ago

10.1128/mSystems.00215-21

Time-Resolved Proteome Analysis of Listeria monocytogenes during Infection Reveals the Role of the AAA+ Chaperone ClpC for Host Cell Adaptation
Cited by: 5
Author(s): Marlène S Birk, Rina Ahmed-Begrich, Stefan Tran, Alexander K. W. Elsholz, Christian K. Frese, Emmanuelle Charpentier
Software Mentions: 4
Published: over 3 years ago

10.2196/12231

Designing a Chatbot for a Brief Motivational Interview on Stress Management: Qualitative Case Study
Cited by: 70
Author(s): SoHyun Park, Jeewon Choi, Sung‐Woo Lee, Changhoon Oh, Changdai Kim, Soohyun La, Joonhwan Lee, Bongwon Suh
Software Mentions: 4
Published: over 5 years ago

10.1093/database/baw052

ToxDB: pathway-level interpretation of drug-treatment data
Cited by: 18
Author(s): Christopher Hardt, Moritz Emanuel Beber, Axel Rasche, Atanas Kamburov, Dennie G. A. J. Hebels, Jos Kleinjans, Ralf Herwig
Software Mentions: 4
Published: almost 9 years ago

10.1093/database/baab013

MENSAdb: a thorough structural analysis of membrane protein dimers
Cited by: 1
Author(s): Pedro Matos-Filipe, António Preto, Panagiotis I. Koukos, Joana Mourão, Alexandre M. J. J. Bonvin, Irina S. Moreira
Software Mentions: 4
Published: almost 4 years ago

10.3390/s21010167

Open-Source Federated Learning Frameworks for IoT: A Comparative Review and Analysis
Cited by: 48
Author(s): Ivan Kholod, Evgeny Yanaki, Dmitry Fomichev, Evgeniy D. Shalugin, Evgenia Novikova, Evgeny Filippov, M. Nordlund
Software Mentions: 4
Published: almost 4 years ago

10.3390/s17071691

A Context-Driven Model for the Flat Roofs Construction Process through Sensing Systems, Internet-of-Things and Last Planner System
Cited by: 6
Author(s): María Dolores Andújar-Montoya, Diego Marcos-Jorquera, Francisco Manuel García-Botella, Virgilio Gilart-Iglesias
Software Mentions: 4
Published: over 7 years ago

10.1038/s41597-019-0081-y

Catalysis-Hub.org, an open electronic structure database for surface reactions
Cited by: 150
Author(s): Kirsten T. Winther, Max J. Hoffmann, Jacob R. Boes, Osman Mamun, Michal Bajdich, Thomas Bligaard
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-74648-y

Prediction of rifampicin resistance beyond the RRDR using structure-based machine learning approaches
Cited by: 20
Author(s): Stephanie Portelli, Yoochan Myung, Nicholas Furnham, Sundeep Chaitanya Vedithi, Douglas E V Pires, David B. Ascher
Software Mentions: 4
Published: about 4 years ago

10.3390/s21093239

Proposal of an Economy of Things Architecture and an Approach Comparing Cryptocurrencies
Cited by: 0
Author(s): Bruno Machado Agostinho, Mário A. R. Dantas, Alex Sandro Roschildt Pinto
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.11282

Population genomics of intrapatient HIV-1 evolution
Cited by: 205
Author(s): Fabio Zanini, Johanna Brodin, Lina Thebo, Christa Lanz, Göran Bratt, Jan Albert, Richard A. Neher
Software Mentions: 4
Published: about 9 years ago

10.1186/s12911-016-0306-3

Temporal bone radiology report classification using open source machine learning and natural langue processing libraries
Cited by: 15
Author(s): Aaron J. Masino, Robert W. Grundmeier, Jeffrey W. Pennington, John A. Germiller, E. Bryan Crenshaw
Software Mentions: 4
Published: over 8 years ago

10.3390/ijerph17145243

Translator Exposure APIs: Open Access to Data on Airborne Pollutant Exposures, Roadway Exposures, and Socio-Environmental Exposures and Use Case Application
Cited by: 4
Author(s): Alejandro Valencia, Lisa Stillwell, Stephen J. Appold, Saravanan Arunachalam, Steven J. Cox, Hao Xu, Charles Schmitt, Shepherd H. Schurman, Stavros Garantziotis, William Xue, Stanley C. Ahalt, Karamarie Fecho
Software Mentions: 4
Published: over 4 years ago

10.1186/s12936-021-03848-2

MALBoost: a web-based application for gene regulatory network analysis in Plasmodium falciparum
Cited by: 0
Author(s): Roelof van Wyk, Riëtte van Biljon, Lyn-Marié Birkholtz
Software Mentions: 4
Published: over 3 years ago

10.3390/s21010010

MUP: Simplifying Secure Over-The-Air Update with MQTT for Constrained IoT Devices
Cited by: 4
Author(s): Kristina Sahlmann, Vera Clemens, Michael A. Nowak, Bettina Schnor
Software Mentions: 4
Published: about 4 years ago

10.7717/peerj-cs.144

The Modern Research Data Portal: a design pattern for networked, data-intensive science
Cited by: 24
Author(s): Kyle Chard, Eli Dart, Ian Foster, David J. Shifflett, Steven Tuecke, Jason Williams
Software Mentions: 4
Published: almost 7 years ago

10.15252/emmm.201910427

Plasma Proteome Profiling to detect and avoid sample‐related biases in biomarker studies
Cited by: 141
Author(s): Philipp E. Geyer, Eugenia Voytik, Peter V. Treit, Sophia Doll, Alisa Kleinhempel, Lili Niu, Johannes B. Müller-Reif, Marie-Luise Buchholtz, Jakob Bader, Daniel Teupser, Lesca M. Holdt
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-86015-6

K-means quantization for a web-based open-source flow cytometry analysis platform
Cited by: 2
Author(s): Nathan Wong, Dae-Hwan Kim, Zachery Robinson, Connie Huang, Irina M. Conboy
Software Mentions: 3
Published: over 3 years ago

10.2196/29058

A Machine Learning Approach for Mortality Prediction in COVID-19 Pneumonia: Development and Evaluation of the Piacenza Score
Cited by: 28
Author(s): Géza Halász, Michela Sperti, Matteo Villani, Umberto Michelucci, Piergiuseppe Agostoni, Andrea Biagi, Luca Rossi, Andrea Botti, Chiara Mari, Marco Maccarini, Filippo Pura, Loris Roveda, Alessia Nardecchia, Emanuele Mottola, Massimo Nolli, Elisabetta Salvioni, Massimo Mapelli, Marco Agostino Deriu, Dario Piga, Massimo Piepoli
Software Mentions: 3
Published: over 3 years ago

10.3389/fchem.2020.00046

ChEMBL-Likeness Score and Database GDBChEMBL
Cited by: 29
Author(s): Sven Bühlmann, Jean‐Louis Reymond
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2021.638960

Remus: A Web Application for Prioritization of Regulatory Regions and Variants in Monogenic Diseases
Cited by: 1
Author(s): Paweł Sztromwasser, Damian Skrzypczak, Arkadiusz Michalak, Wojciech Fendler
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmolb.2021.726232

3dRS, a Web-Based Tool to Share Interactive Representations of 3D Biomolecular Structures and Molecular Dynamics Trajectories
Cited by: 6
Author(s): Genís Bayarri, Modesto Orozco
Software Mentions: 3
Published: over 3 years ago

10.3389/fnhum.2021.621493

MindLink-Eumpy: An Open-Source Python Toolbox for Multimodal Emotion Recognition
Cited by: 13
Author(s): Ruixin Li, Yan Liang, Xiaojian Liu, Bingbing Wang, Wenxin Huang, Zhanchuan Cai, Yaoguang Ye, Lina Qiu, Jiahui Pan
Software Mentions: 3
Published: almost 4 years ago

10.3389/fnins.2020.00125

BraTS Toolkit: Translating BraTS Brain Tumor Segmentation Algorithms Into Clinical and Scientific Practice
Cited by: 46
Author(s): Florian Kofler, Christoph Berger, Diana Waldmannstetter, Jana Lipková, Ivan Ezhov, Giles Tetteh, Jan S. Kirschke, Claus Zimmer, Benedikt Wiestler, Bjoern Menze
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-66611-8

The development of a scoring and ranking strategy for a patient-tailored adverse drug reaction prediction in polypharmacy
Cited by: 5
Author(s): Andrei Valeanu, Cristian Damian, Cristina Daniela Marineci, Simona Negreş
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-58356-1

Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life
Cited by: 59
Author(s): Migun Shakya, Sanaa Ahmed, Karen W. Davenport, Mark Flynn, Chien‐Chi Lo, Patrick Chain
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13073-021-00909-8

PhenCards: a data resource linking human phenotype information to biomedical knowledge
Cited by: 4
Author(s): James M Havrilla, Cong Liu, Xiangchen Dong, Chunhua Weng, Kai Wang
Software Mentions: 3
Published: over 3 years ago

10.1186/s13040-018-0175-7

PathCORE-T: identifying and visualizing globally co-occurring pathways in large transcriptomic compendia
Cited by: 15
Author(s): Kathleen M. Chen, Jie Tan, Gregory P. Way, Georgia Doing, Deborah A. Hogan, Casey S. Greene
Software Mentions: 3
Published: over 6 years ago

10.3390/healthcare9050522

A Novel Method for COVID-19 Diagnosis Using Artificial Intelligence in Chest X-ray Images
Cited by: 54
Author(s): Yassir Edrees Almalki, Abdul Qayyum, Muhammad Irfan, Noman Haider, Adam Głowacz, Fahad Alshehri, Sharifa Khalid Alduraibi, Khalaf Alshamrani, Mohammad Abd Alkhalik Basha, Alaa Khalid Alduraibi, M.K. Saeed, Saifur Rahman
Software Mentions: 3
Published: over 3 years ago

10.1002/pro.3279

C<scp>CB</scp>uilder 2.0: Powerful and accessible coiled‐coil modeling
Cited by: 93
Author(s): Christopher W. Wood, Derek N. Woolfson
Software Mentions: 3
Published: over 7 years ago

10.1186/s13321-017-0243-x

eTOX ALLIES: an automated pipeLine for linear interaction energy-based simulations
Cited by: 7
Author(s): Luigi Capoferri, Marc van Dijk, Ariën S. Rustenburg, Tsjerk A. Wassenaar, Derk P. Kooi, Eko Aditya Rifai, Nico Vermeulen, Daan P. Geerke
Software Mentions: 3
Published: about 7 years ago

10.3390/ijerph18157776

A Weakly-Supervised Named Entity Recognition Machine Learning Approach for Emergency Medical Services Clinical Audit
Cited by: 2
Author(s): Han Wang, Wesley Yeung, Qin Xiang Ng, Angeline Tung, Joey Ai Meng Tay, Davin Ryanputra, Marcus Eng Hock Ong, Mengling Feng, Shalini Arulanandam
Software Mentions: 3
Published: over 3 years ago

10.1093/bioinformatics/btaa946

Agile workflow for interactive analysis of mass cytometry data
Cited by: 6
Author(s): Julia Casado, Oskari Lehtonen, Ville Rantanen, Katja Kaipio, Luca Pasquini, Antti Häkkinen, Eleonora Petrucci, Johanna Hynninen, Sakari Hietanen, Olli Carpén, Mauro Biffoni, Anniina Färkkilä, Sampsa Hautaniemi
Software Mentions: 3
Published: about 4 years ago

10.2196/29331

A Deep Neural Network for Estimating Low-Density Lipoprotein Cholesterol From Electronic Health Records: Real-Time Routine Clinical Application
Cited by: 6
Author(s): Sangwon Hwang, Chanwoo Gwon, Dong Woo Seo, Jooyoung Cho, Jang Young Kim, Young Uh
Software Mentions: 3
Published: over 3 years ago

10.3390/mps4020041

Authorship Weightage Algorithm for Academic Publications: A New Calculation and ACES Webserver for Determining Expertise
Cited by: 0
Author(s): Wei-Ling Wu, Owen Tan, Kwok-Fong Chan, Nicole Bernadette Ong, David Gunasegaran, Samuel Ken‐En Gan
Software Mentions: 3
Published: over 3 years ago

10.1155/2020/8870141

Design and Development of Diabetes Management System Using Machine Learning
Cited by: 21
Author(s): Robert A. Sowah, Adelaide A Bampoe-Addo, Stephen K. Armoo, Firibu Kwesi Saalia, Francis Gatsi, Baffour Sarkodie-Mensah
Software Mentions: 3
Published: over 4 years ago

10.12688/wellcomeopenres.12201.1

WeBCMD: A cross-platform interface for the BCMD modelling framework
Cited by: 0
Author(s): Joshua Russell-Buckland, Matthew Caldwell, Ilias Tachtsidis
Software Mentions: 3
Published: over 7 years ago

10.1107/S1600577518010986

<i>Sirepo</i>: an open-source cloud-based software interface for X-ray source and optics simulations
Cited by: 12
Author(s): Maksim Rakitin, Paul Moeller, Robert Nagler, Boaz Nash, David L. Bruhwiler, D. Smalyuk, Mikhail Zhernenkov, Oleg Chubar
Software Mentions: 3
Published: about 6 years ago

10.1128/mBio.02401-20

A Mycobacterial Systems Resource for the Research Community
Cited by: 20
Author(s): Julius Judd, Jill G. Canestrari, Ryan R. Clark, Aviva Joseph, Pascal Lapierre, Erica Lasek‐Nesselquist, Mushtaq Ahmad Mir, Michael J. Palumbo, Carol Smith, Michael E. Stone, Ashutosh Upadhyay‬, Samantha E. Wirth, Rebekah M. Dedrick, Christopher G Meier, Daniel A. Russell, Alexander Dills, Edward S. Dove, Jemila C. Kester, Ian D. Wolf, Junhao Zhu, Eric Rubin, Sarah M. Fortune, Graham F. Hatfull, Todd A. Gray, Joseph T. Wade, Keith M. Derbyshire
Software Mentions: 3
Published: over 3 years ago

10.7717/peerj-cs.532

Learner question’s correctness assessment and a guided correction method: enhancing the user experience in an interactive online learning system
Cited by: 0
Author(s): Saurabh Pal, Pijush Kanti Dutta Pramanik, Aranyak Maity, Prasenjit Choudhury
Software Mentions: 3
Published: over 3 years ago

10.3390/s21165430

A Scheduling Mechanism Based on Optimization Using IoT-Tasks Orchestration for Efficient Patient Health Monitoring
Cited by: 20
Author(s): Naeem Iqbal, Imran, Shabir Ahmad, Rashid Ahmad, Do‐Hyeun Kim
Software Mentions: 3
Published: over 3 years ago

10.7717/peerj-cs.376

On automated RBAC assessment by constructing a centralized perspective for microservice mesh
Cited by: 4
Author(s): Dipta Das, Andrew Walker, Vincent Bushong, Jan Svacina, Tomáš Černý, Václav Matyáš
Software Mentions: 3
Published: almost 4 years ago

10.3390/s21124061

UAV-Based and WebRTC-Based Open Universal Framework to Monitor Urban and Industrial Areas
Cited by: 14
Author(s): Agnieszka Chodorek, Robert R. Chodorek, Paweł Sitek
Software Mentions: 3
Published: over 3 years ago

10.1186/s13007-020-00625-1

Machine learning for high-throughput field phenotyping and image processing provides insight into the association of above and below-ground traits in cassava (Manihot esculenta Crantz)
Cited by: 37
Author(s): Michael Gomez Selvaraj, Manuel Valderrama, Diego Tejada Guzmán, Milton Orlando Valencia, Henry Ruiz, Animesh Acharjee
Software Mentions: 3
Published: over 4 years ago

10.1186/s12859-020-03894-8

A2A: a platform for research in biomedical literature search
Cited by: 3
Author(s): Maciej Rybiński, Sarvnaz Karimi, Vincent Nguyen, Cécile Paris
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1006542

Eleven quick tips to build a usable REST API for life sciences
Cited by: 17
Author(s): Aleksandra Tarkowska, Denise Carvalho-Silva, Charles E. Cook, E. B. Turner, Alex Bateman, Andy Yates
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1008336

LocusFocus: Web-based colocalization for the annotation and functional follow-up of GWAS
Cited by: 25
Author(s): Naim Panjwani, Fan Wang, Scott Mastromatteo, Allen Bao, Cheng Wang, Gengming He, Jiafen Gong, Johanna M. Rommens, Lei Sun, Lisa J. Strug
Software Mentions: 3
Published: about 4 years ago

10.3390/ani11020357

Deep Learning-Based Cattle Vocal Classification Model and Real-Time Livestock Monitoring System with Noise Filtering
Cited by: 32
Author(s): Soo Hyun Park, Na Yeon Kim, Sang Ho Moon, Changho Jhin, Hak-Jin Kim, Jung‐Seok Yang, Hyoung Seok Kim, Taek Sung Lee, Ju Young Lee, Soo Hyun Park
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12859-018-2334-8

A new cross-platform architecture for epi-info software suite
Cited by: 7
Author(s): Blake Camp, Jaya Krishna Mandivarapu, Nagashayana Ramamurthy, James Wingo, Anu G. Bourgeois, Xiaojun Cao, Rajshekhar Sunderraman
Software Mentions: 3
Published: about 6 years ago

10.2196/jmir.6676

MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers
Cited by: 5
Author(s): Alexis Allot, Kirsley Chennen, Yannis Nevers, Laetitia Poidevin, Arnaud Kress, Raymond Ripp, Julie Thompson, Olivier Poch, Odile Lecompte
Software Mentions: 3
Published: over 7 years ago

10.1111/jpi.12673

Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina
Cited by: 12
Author(s): Eric Terry Wang Wei-Chiao Chang, Cong Fu, Steven L. Coon, Shahar Alon, Marjan Bozinoski, Matthew Breymaier, Diego Martín Bustos, Samuel Clokie, Yoav Gothilf, Caroline Esnault, P. Michael Iuvone, Christopher E. Mason, Margaret J. Ochocinska, Adi Tovin, Charles Wang, Pin-Xian Xu, Jiaquan Zhu, Ryan Dale, David C. Klein
Software Mentions: 3
Published: over 4 years ago

10.1093/database/bay141

EnhancerDB: a resource of transcriptional regulation in the context of enhancers
Cited by: 24
Author(s): Ran Kang, Yiming Zhang, Qingqing Huang, Meng Ji, Ruofan Ding, Yunjian Chang, Lili Xiong, Zhiyun Guo
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12911-021-01565-z

Supporting the classification of patients in public hospitals in Chile by designing, deploying and validating a system based on natural language processing
Cited by: 9
Author(s): Fabián Villena, Jorge Pérez, René Lagos, Jocelyn Dunstan
Software Mentions: 3
Published: over 3 years ago

10.3390/s19194217

A Multi-Protocol IoT Platform Based on Open-Source Frameworks
Cited by: 24
Author(s): Charilaos Akasiadis, Vassilis Pitsilis, Constantine D. Spyropoulos
Software Mentions: 3
Published: about 5 years ago

10.1093/database/baz075

VariED: the first integrated database of gene annotation and expression profiles for variants related to human diseases
Cited by: 6
Author(s): Chien‐Yueh Lee, Amrita Chattopadhyay, Li-Mei Chiang, Jyh‐Ming Jimmy Juang, Liang‐Chuan Lai, Mong‐Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12911-021-01574-y

Development and web deployment of an automated neuroradiology MRI protocoling tool with natural language processing
Cited by: 1
Author(s): Yeshwant Chillakuru, Shourya Munjal, Benjamin Laguna, Timothy L. Chen, Gunvant Chaudhari, Thienkhai Vu, Youngho Seo, Jared Narvid, Jae Ho Sohn
Software Mentions: 3
Published: over 3 years ago

10.3390/s19071692

Custom Scanning Hyperspectral Imaging System for Biomedical Applications: Modeling, Benchmarking, and Specifications
Cited by: 14
Author(s): José A. Gutiérrez-Gutiérrez, Arturo Pardo, Eusebio Real, José Miguel López‐Higuera, Olga M. Conde
Software Mentions: 3
Published: over 5 years ago

10.3390/s18020474

Design and Implementation of Cloud-Centric Configuration Repository for DIY IoT Applications
Cited by: 37
Author(s): Shabir Ahmad, Hang Lei, Do‐Hyeun Kim
Software Mentions: 3
Published: almost 7 years ago

10.1007/s43926-021-00008-5

End-to-end experimentation of a 5G vertical within the scope of blended learning
Cited by: 12
Author(s): Ngombo Armando, Rui M. Almeida, José Marcelo Fernandes, Jorge Sá Silva, Fernando Boavida
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12967-020-02675-4

Design of a companion bioinformatic tool to detect the emergence and geographical distribution of SARS-CoV-2 Spike protein genetic variants
Cited by: 12
Author(s): Alice Massacci, Eleonora Sperandio, Lorenzo D’Ambrosio, Mariano Maffei, Fabio Palombo, Luigi Aurisicchio, Gennaro Ciliberto, Matteo Pallocca
Software Mentions: 2
Published: about 4 years ago

10.1107/S2059798320014515

High-performance macromolecular data delivery and visualization for the web
Cited by: 2
Author(s): David Sehnal, Radka Svobodová, Karel Berka, Alexander Rose, S.K. Burley, Sameer Velankar, Jaroslav Koča
Software Mentions: 2
Published: about 4 years ago

10.1007/978-3-030-58858-8_13

Diminuendo! Tactics in Support of FaaS Migrations
Cited by: 4
Author(s): Sebastian Werner, Jörn Kuhlenkamp, Frank Pallas, Niklas Anders, Nebi Mucaj, Olesia Tsaplina, Christian Martin Schmidt, Kann Yildirim
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12859-020-03762-5

Moving forward through the in silico modeling of tuberculosis: a further step with UISS-TB
Cited by: 10
Author(s): Giulia Russo, Giuseppe Sgroi, Giuseppe Alessandro Parasiliti Palumbo, Marzio Pennisi, Miguel A. Juárez, Père-Joan Cardona, Santo Motta, K. Barry Walker, Epifanio Fichera, Marco Viceconti, Francesco Pappalardo
Software Mentions: 2
Published: about 4 years ago

10.1186/s12859-020-03938-z

DISTEVAL: a web server for evaluating predicted protein distances
Cited by: 6
Author(s): Badri Adhikari, Bikash Shrestha, Matthew Bernardini, Jie Hou, Jamie Lea
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12920-020-0694-1

neoANT-HILL: an integrated tool for identification of potential neoantigens
Cited by: 5
Author(s): Ana Carolina Coelho, André Fonseca, Daniel Freitas Freire Martins, Paulo Lins, Lucas Marques da Cunha, Sandro J. de Souza
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12911-021-01566-y

Patient similarity analytics for explainable clinical risk prediction
Cited by: 5
Author(s): Hao Sen Andrew Fang, Ngiap Chuan Tan, Wei Ying Tan, Ronald Wihal Oei, Mong Li Lee, Wynne Hsu
Software Mentions: 2
Published: over 3 years ago

10.1186/s13104-019-4866-z

CACTUS: cancer image annotating, calibrating, testing, understanding and sharing in breast cancer histopathology
Cited by: 3
Author(s): Alper Aksaç, Tansel Özyer, Douglas J. Demetrick, Reda Alhajj
Software Mentions: 2
Published: almost 5 years ago

10.12688/wellcomeopenres.16121.1

An ontology-based modelling system (OBMS) for representing behaviour change theories applied to 76 theories
Cited by: 20
Author(s): J. R. Hale, Janna Hastings, Robert A. West, Carmen E. Lefevre, Artur Direito, Lauren Connell Bohlen, Cristina Godinho, Niall C Anderson, Silje Zink, Hilary Groarke, Susan Michie
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1009149

Covasim: An agent-based model of COVID-19 dynamics and interventions
Cited by: 281
Author(s): Cliff C Kerr, Robyn M. Stuart, Dina Mistry, Romesh Abeysuriya, Katherine Rosenfeld, Gregory R. Hart, Rafael C. Núñez, Jamie A. Cohen, Prashanth Selvaraj, Brittany Hagedorn, Lauren George, Michał Jastrzȩbski, Amanda S Izzo, Greer Fowler, Anna Palmer, Dominic Delport, Nick Scott, Sherrie L Kelly, Caroline S. Bennette, Bradley G. Wagner, Stewart T. Chang, Assaf P. Oron, E. A. Wenger, Jasmina Panovska‐Griffiths, Michael Famulare, Daniel J. Klein
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0171908

KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba)
Cited by: 19
Author(s): Gabriele Sales, Bruce E. Deagle, Enrica Calura, Paolo Martini, Alberto Biscontin, Cristiano De Pittà, So Kawaguchi, Chiara Romualdi, Bettina Meyer, Rodolfo Costa, Simon Jarman
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0242953

Development and external validation of a prognostic tool for COVID-19 critical disease
Cited by: 19
Author(s): Daniel Chow, Justin Glavis-Bloom, Jennifer E. Soun, Brent D. Weinberg, Theresa B Loveless, Xiaohui Xie, Simukayi Mutasa, Edwin S. Monuki, Jung In Park, Daniela Bota, Jie Wu, Leslie M. Thompson, Bernadette Boden‐Albala, Saahir Khan, Alpesh Amin, Peter D. Chang
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0223993

iCrotoK-PseAAC: Identify lysine crotonylation sites by blending position relative statistical features according to the Chou’s 5-step rule
Cited by: 37
Author(s): Sharaf J. Malebary, Muhammad Safi ur Rehman, Yaser Daanial Khan
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0083784

Low-Bandwidth and Non-Compute Intensive Remote Identification of Microbes from Raw Sequencing Reads
Cited by: 5
Author(s): Laurent Gautier, Ole Lund
Software Mentions: 2
Published: almost 11 years ago

10.3390/cells8070767

Ensemble of Deep Recurrent Neural Networks for Identifying Enhancers via Dinucleotide Physicochemical Properties
Cited by: 27
Author(s): Kok Keng Tan, Nguyen Quoc Khanh Le, Hui‐Yuan Yeh, Matthew Chin Heng Chua
Software Mentions: 2
Published: over 5 years ago

Projects: pypi: Flask

Papers Mentioning Flask 187