Data

Tools

Indexes

Applications

Experiments

Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s12859-016-1321-1

https://doi.org/10.1186/s12859-016-1321-1

GEN3VA: aggregation and analysis of gene expression signatures from related studies

Cited by: 17
Author(s): Gregory W. Gundersen, Kathleen M. Jagodnik, Holly Woodland, Nicholas F. Fernandez, Kevin Sani, Anders B. Dohlman, Peter M.U. Ung, Caroline D. Monteiro, Avner Schlessinger, Avi Ma’ayan
Published: over 8 years ago

Software Mentions 9

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
Very Likely Science (83)
bioconductor: GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
Very Likely Science (85)
pypi: Flask
A simple framework for building complex web applications.
Papers that mentioned: 187
Very Likely Science (100)
pypi: glide
Easy ETL
Papers that mentioned: 11
Very Likely Science (65)
pypi: Jinja2
A very fast and expressive template engine.
Papers that mentioned: 16
Very Likely Science (100)
pypi: PyMOL
Papers that mentioned: 8,266
Very Likely Science (90)
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431
Very Likely Science (100)