Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-016-1321-1

https://doi.org/10.1186/s12859-016-1321-1

GEN3VA: aggregation and analysis of gene expression signatures from related studies

Cited by: 17
Author(s): Gregory W. Gundersen, Kathleen M. Jagodnik, Holly Woodland, Nicholas F. Fernandez, Kevin Sani, Anders B. Dohlman, Peter M.U. Ung, Caroline D. Monteiro, Avner Schlessinger, Avi Ma’ayan
Published: about 8 years ago

Software Mentions 9

bioconductor: ArrayExpress

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962

bioconductor: GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

cran: SAM

Sparse Additive Modelling
Papers that mentioned: 4,566

pypi: Flask

A simple framework for building complex web applications.
Papers that mentioned: 187

pypi: glide

Easy ETL
Papers that mentioned: 11

pypi: Jinja2

A very fast and expressive template engine.
Papers that mentioned: 16

pypi: PyMOL

Papers that mentioned: 8,266

pypi: scikit-learn

A set of python modules for machine learning and data mining
Papers that mentioned: 2,431