pypi: DataAnalysis | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0195442

An antibody with Fab-constant domains exchanged for a pair of CH3 domains
Cited by: 9
Author(s): Gordana Wozniak‐Knopp, Gerhard Stadlmayr, Jan Walther Perthold, Katharina Stadlbauer, Mathias Gotsmy, Stefan Becker, Florian Rüker
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0032606

Metabolic and Proteomic Profiling of Diapause in the Aphid Parasitoid Praon volucre
Cited by: 74
Author(s): Hervé Colinet, David Renault, Blandine Guével, Emmanuelle Com
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0074584

Doping Control Using High and Ultra-High Resolution Mass Spectrometry Based Non-Targeted Metabolomics-A Case Study of Salbutamol and Budesonide Abuse
Cited by: 30
Author(s): Agnèta Kiss, Marianna Lucio, Aurélie Fildier, Corinne Buisson, Philippe Schmitt‐Kopplin, Cécile Cren-Olivé
Software Mentions: 2
Published: about 11 years ago

10.1038/s41419-018-0423-2

A multi-omic analysis reveals the role of fumarate in regulating the virulence of enterohemorrhagic Escherichia coli
Cited by: 20
Author(s): Chengi Kuo, Sin Tian Wang, Chia Mei Lin, Hao-Chieh Chiu, Cheng Huang, Der Yen Lee, Geen Dong Chang, Tse‐Chuan Chou, Jenn Wei Chen, Chang Shi Chen
Software Mentions: 2
Published: over 6 years ago

10.3389/fcell.2021.720570

Ion Mobility Coupled to a Time-of-Flight Mass Analyzer Combined With Fragment Intensity Predictions Improves Identification of Classical Bioactive Peptides and Small Open Reading Frame-Encoded Peptides
Cited by: 7
Author(s): Marlies K. R. Peeters, Geert Baggerman, Ralf Gabriels, Elise Pepermans, Gerben Menschaert, Kurt Boonen
Software Mentions: 2
Published: about 3 years ago

10.3390/ijms22052592

Overexpression of Human ABCB1 and ABCG2 Reduces the Susceptibility of Cancer Cells to the Histone Deacetylase 6-Specific Inhibitor Citarinostat
Cited by: 8
Author(s): Chung-Pu Wu, Cheng-Yu Hung, Sabrina Lusvarghi, Yen-Fu Chang, Sung-Han Hsiao, Yang-Hui Huang, Tai‐Ho Hung, Jau‐Song Yu, Suresh V. Ambudkar
Software Mentions: 2
Published: over 3 years ago

10.1155/2015/164846

Mass Spectrometry-Based Proteomic Study Makes High-Density Lipoprotein a Biomarker for Atherosclerotic Vascular Disease
Cited by: 13
Author(s): Chiz Tzung Chang, Chao Yang, Fuu Jen Tsai, Shih Yi Lin, Chao‐Jung Chen
Software Mentions: 1
Published: almost 10 years ago

10.3390/molecules23123277

Structural Features of Heparan Sulfate from Multiple Osteochondromas and Chondrosarcomas
Cited by: 6
Author(s): Noemi Veraldi, Alessandro Parra, Elena Urso, Cesare Cosentino, Manuela Locatelli, Serena Corsini, Elena Pedrini, Annamaria Naggi, Antonella Bisio, Luca Sangiorgi
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2091-14-18

Identification of the lamin A/C phosphoepitope recognized by the antibody P-STM in mitotic HeLa S3 cells
Cited by: 14
Author(s): Jeng-Ting Chen, Chia-Wen Ho, Lang‐Ming Chi, Kun-Yi Chien, Ya-Ju Hsieh, Shio Jean Lin, Jau‐Song Yu
Software Mentions: 1
Published: over 11 years ago

10.3390/biology6040045

Exploring the Glycans of Euglena gracilis
Cited by: 22
Author(s): Ellis C. O’Neill, Sakonwan Kuhaudomlarp, Martin Rejzek, Jonatan U. Fangel, Kathirvel Alagesan, Daniel Kolarich, William G. T. Willats, Robert A. Field
Software Mentions: 1
Published: almost 7 years ago

10.3390/biology10060514

Recovery of Bioactive Compounds from Industrial Exhausted Olive Pomace through Ultrasound-Assisted Extraction
Cited by: 13
Author(s): Irene Gómez‐Cruz, María del Mar Contreras, Florbela Carvalheiro, Luís C. Duarte, Luísa B. Roseiro, Inmaculada Romero, Eulógio Castro
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2091-15-19

Comparative analysis of diosgenin in Dioscorea species and related medicinal plants by UPLC-DAD-MS
Cited by: 60
Author(s): Tao Yi, Lan-Lan Fan, Hongli Chen, Guo‐Yuan Zhu, Suen Hau‐Man, Yiqun Tang, Lin Zhu, Chu Chu, Zhongzhen Zhao, Hubiao Chen
Software Mentions: 1
Published: almost 11 years ago

10.3390/ani9050222

Species-Specific Discrimination of Insect Meals for Aquafeeds by Direct Comparison of Tandem Mass Spectra
Cited by: 35
Author(s): Ikram Belghit, Erik-Jan Lock, Olivier Fumière, Marie-Caroline Lecrenier, Patricia Renard, Marc Dieu, Marc H.G. Berntssen, Magnus Palmblad, Josef Daniel Rasinger
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules26165000

Fluorescent Bis-Calix[4]arene-Carbazole Conjugates: Synthesis and Inclusion Complexation Studies with Fullerenes C60 and C70
Cited by: 1
Author(s): Patrícia D. Barata, Alexandra I. Costa, Sérgio Costa, José V. Prata
Software Mentions: 1
Published: over 3 years ago

10.1074/mcp.M115.053546

Site-specific O-Glycosylation Analysis of Human Blood Plasma Proteins
Cited by: 68
Author(s): Marcus Hoffmann, Kristina Marx, Udo Reichl, Manfred Wuhrer, Erdmann Rapp
Software Mentions: 1
Published: almost 9 years ago

10.1177/1177932219868223

Top-Down and Intact Protein Mass Spectrometry Data Visualization for Proteoform Analysis Using VisioProt-MS
Cited by: 6
Author(s): Jean Lesné, Marie‐Pierre Bousquet, Julien Marcoux, Marie Locard‐Paulet
Software Mentions: 1
Published: almost 6 years ago

10.1074/mcp.RA117.000240

N- and O-glycosylation Analysis of Human C1-inhibitor Reveals Extensive Mucin-type O-Glycosylation
Cited by: 48
Author(s): Kathrin Stavenhagen, Hacı Mehmet Kayili, Stephanie Holst, Carolien A. M. Koeleman, Ruchira Engel, Diana Wouters, Sacha Zeerleder, Bekir Salih, Manfred Wuhrer
Software Mentions: 1
Published: over 6 years ago

10.1074/mcp.M114.047381

Hinge-Region O-Glycosylation of Human Immunoglobulin G3 (IgG3)
Cited by: 83
Author(s): Rosina Plomp, Gillian Dekkers, Yoann Rombouts, Remco Visser, Carolien A. M. Koeleman, Guinevere S. M. Kammeijer, Bas C. Jansen, Theo Rispens, Paul J. Hensbergen, Gestur Vidarsson, Manfred Wuhrer
Software Mentions: 1
Published: over 9 years ago

10.3390/molecules26164929

Expanding the Myxochelin Natural Product Family by Nicotinic Acid Containing Congeners
Cited by: 4
Author(s): Nicolas Frank, Márió Széles, Sergi Hervé Akoné, Sari Rasheed, Stephan Hüttel, Simon Frewert, Mostafa M. Hamed, Jennifer Herrmann, Sören M. M. Schuler, A. Hirsch, Rolf Müller
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules23051033

Identification of Peptides in Flowers of Sambucus nigra with Antimicrobial Activity against Aquaculture Pathogens
Cited by: 19
Author(s): Claudio Álvarez, Andrés Barriga, Fernando Alberício, Soledad Estrella, Fanny Guzmán
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules26123488

Sustainable Surfactin Production by Bacillus subtilis Using Crude Glycerol from Different Wastes
Cited by: 21
Author(s): Tomasz Janek, Eduardo J. Gudiña, Xymena Połomska, Piotr Biniarz, Dominika Jama, L. R. Rodrigues, Waldemar Rymowicz, Zbigniew Lazar
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules26041036

Stability and Photoisomerization of Stilbenes Isolated from the Bark of Norway Spruce Roots
Cited by: 13
Author(s): Harri Latva-Mäenpää, Riziwanguli Wufu, Daniel Girma Mulat, Tytti Sarjala, Pekka Saranpää, Kristiina Wähälä
Software Mentions: 1
Published: almost 4 years ago

10.3390/bioengineering7040161

Depletion of Boric Acid and Cobalt from Cultivation Media: Impact on Recombinant Protein Production with Komagataella phaffii
Cited by: 3
Author(s): Alexander Pekarsky, Sophia Mihalyi, Maximilian Weiß, Andreas Limbeck, Oliver Spadiut
Software Mentions: 1
Published: almost 4 years ago

10.3390/molecules26030678

New Isomalabaricane-Derived Metabolites from a Stelletta sp. Marine Sponge
Cited by: 5
Author(s): Sophia A. Kolesnikova, Ekaterina G. Lyakhova, Anastasia B. Kozhushnaya, Anatoly I. Kalinovsky, Д. В. Бердышев, Roman S. Popov, Valentin A. Stonik
Software Mentions: 1
Published: almost 4 years ago

10.31557/APJCP.2020.21.2.363

Ethanolic Extract of Ocimum sanctum Leaves Reduced Invasion and Matrix Metalloproteinase Activity of Head and Neck Cancer Cell Lines
Cited by: 16
Author(s): Kusumawadee Utispan, Nattisa Niyomtham, Boon‐ek Yingyongnarongkul, Sittichai Koontongkaew
Software Mentions: 1
Published: almost 5 years ago

10.3390/molecules17089912

Anti-metastatic Semi-synthetic Sulfated Maltotriose C-C Linked Dimers. Synthesis and Characterisation
Cited by: 7
Author(s): Elena Vismara, Alessia Coletti, Antonio Valerio, Annamaria Naggi, Elena Urso, Giangiacomo Torri
Software Mentions: 1
Published: over 12 years ago

10.1074/mcp.RA120.002055

Accurate MS-based Rab10 Phosphorylation Stoichiometry Determination as Readout for LRRK2 Activity in Parkinson's Disease
Cited by: 43
Author(s): Özge Karayel, Francesca Tonelli, Sebastian Virreira Winter, Philipp E. Geyer, Yuxin Fan, Esther Sammler, Dario R. Alessi, Martin Steger, Matthias Mann
Software Mentions: 1
Published: about 4 years ago

10.1186/1476-4598-5-75

Proteomic alteration in gastic adenocarcinomas from Japanese patients
Cited by: 28
Author(s): Toshio Yoshihara, Yoshito Kadota, Yoshiyuki Yoshimura, Yutaka Tatano, Norihiko Takeuchi, Hiroshi Okitsu, Atsushi Umemoto, Takashi Yamauchi, Kohji Itoh
Software Mentions: 1
Published: almost 18 years ago

10.3762/bjoc.13.261

An efficient synthesis of 1,6-anhydro-N-acetylmuramic acid from N-acetylglucosamine
Cited by: 6
Author(s): Matthew Calvert, Christoph Mayer, Alexander Titz
Software Mentions: 1
Published: almost 7 years ago

10.1186/1756-6606-6-60

A rapid MALDI-TOF mass spectrometry workflow for Drosophila melanogaster differential neuropeptidomics
Cited by: 12
Author(s): Joseph P. Salisbury, Kristin J. Boggio, Yun-Wei A. Hsu, Jeniffer Quijada, Anna Sivachenko, Gabriele Gloeckner, Paul Kowalski, Michael L. Easterling, Michael Rosbash, Jeffrey N. Agar
Software Mentions: 1
Published: almost 11 years ago

10.3390/microorganisms8101617

Screening Fungal Endophytes Derived from Under-Explored Egyptian Marine Habitats for Antimicrobial and Antioxidant Properties in Factionalised Textiles
Cited by: 13
Author(s): Ahmed A. Hamed, Sylvia Soldatou, Mallique Qader, Subha Arjunan, Kevin Jace Miranda, Federica Casolari, Coralie Pavesi, Oluwatofunmilay A. Diyaolu, Bathini Thissera, Manal Eshelli, Lassaâd Belbahri, Lenka Luptákova, Nabil A. Ibrahim, Mohamed S. Abdel‐Aziz, Basma M. Eid, Mosad A. Ghareeb, Mostafa E. Rateb, Rainer Ebel
Software Mentions: 1
Published: about 4 years ago

10.3762/bjnano.11.33

Nanoparticles based on the zwitterionic pillar[5]arene and Ag+: synthesis, self-assembly and cytotoxicity in the human lung cancer cell line A549
Cited by: 14
Author(s): D. N. Shurpik, Denis A. Sevastyanov, П. В. Зеленихин, Pavel L. Padnya, Vladimir G. Evtugyn, Yuriy N Osin, Ivan I. Stoikov
Software Mentions: 1
Published: over 4 years ago

10.1002/aps3.1033

A protocol for high-throughput, untargeted forest community metabolomics using mass spectrometry molecular networks
Cited by: 26
Author(s): Brian E. Sedio, A P Cristopher Boya, Juan Camilo Rojas Echeverri
Software Mentions: 1
Published: over 6 years ago

10.3390/ani11082319

In Vitro Antibacterial Effect of the Methanolic Extract of the Korean Soybean Fermented Product Doenjang against Staphylococcus aureus
Cited by: 5
Author(s): Klára Laloučková, Lucie Malá, Petr Maršík, E. Skřivanová
Software Mentions: 1
Published: over 3 years ago

10.1007/s00216-018-1253-x

Liquid chromatographic nanofractionation with parallel mass spectrometric detection for the screening of plasmin inhibitors and (metallo)proteinases in snake venoms
Cited by: 15
Author(s): Barbara M. Zietek, Morwarid Mayar, Julien Slagboom, Ben Bruyneel, Freek J. Vonk, Govert W. Somsen, Nicholas R. Casewell, Jeroen Kool
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms8071082

Analysis of Cytoplasmic and Secreted Proteins of Staphylococcus aureus Revealed Adaptive Metabolic Homeostasis in Response to Changes in the Environmental Conditions Representative of the Human Wound Site
Cited by: 5
Author(s): Mousa Alreshidi, R. Hugh Dunstan, Margaret M. Macdonald, Vipender Singh, Tim K. Roberts
Software Mentions: 1
Published: over 4 years ago

10.1002/mbo3.107

Identification in<scp>M</scp>arinomonas mediterraneaof a novel quinoprotein with glycine oxidase activity
Cited by: 25
Author(s): Jonatan C. Campillo-Brocal, Patricia Lucas-Elı́o, Antonio Sanchez‐Amat
Software Mentions: 1
Published: over 11 years ago

10.1186/s12917-018-1405-4

Effects of herbal nutraceuticals and/or zinc against Haemonchus contortus in lambs experimentally infected
Cited by: 20
Author(s): Zora Váradyová, Dominika Mravčáková, Michal Babják, Magdalena Bryszak, Ľubomíra Grešáková, Klaudia Čobanová, Svetlana Kišidayová, Iveta Plachá, Alžbeta Königová, Adam Cieślak, Sylwester Ślusarczyk, Łukasz Pecio, Mariusz Kowalczyk, Marián Várady
Software Mentions: 1
Published: over 6 years ago

10.1186/s12934-017-0627-7

Human β-defensin-2 production from S. cerevisiae using the repressible MET17 promoter
Cited by: 13
Author(s): Thea S. B. Møller, Joanna Hay, Malcolm J. Saxton, Karen A. Bunting, Evamaria Petersen, Søren Kjærulff, Christopher J. A. Finnis
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12934-020-01492-0

Heterologous expression of Phanerochaete chrysosporium cellobiose dehydrogenase in Trichoderma reesei
Cited by: 7
Author(s): Lena Wohlschlager, Florian Csarman, Hui S. Chang, Elisabeth Fitz, Bernhard Schink, Roland Ludwig
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12917-021-02744-w

Change in the plasma proteome associated with canine cognitive dysfunction syndrome (CCDS) in Thailand
Cited by: 5
Author(s): Sataporn Phochantachinda, Boonrat Chantong, Onrapak Reamtong, Duangthip Chatchaisak
Software Mentions: 1
Published: almost 4 years ago

10.1007/s00253-016-8051-1

Characterization of three pyranose dehydrogenase isoforms from the litter-decomposing basidiomycete Leucoagaricus meleagris (syn. Agaricus meleagris)
Cited by: 6
Author(s): Michael Graf, Sandra Weber, Daniel Kracher, Roman Kittl, Christoph Sygmund, Roland Ludwig, Clemens K. Peterbauer, Dietmar Haltrich
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12934-018-1032-6

Production of a recombinant peroxidase in different glyco-engineered Pichia pastoris strains: a morphological and physiological comparison
Cited by: 18
Author(s): Alexander Pekarsky, Lukas Veiter, Vignesh Rajamanickam, Christoph Herwig, Clemens Grünwald‐Gruber, Friedrich Altmann, Oliver Spadiut
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12934-020-01495-x

Heterologous expression of the atypical tetracycline chelocardin reveals the full set of genes required for its biosynthesis
Cited by: 4
Author(s): Tadeja Lukežič, Špela Pikl, Nestor Zaburannyi, Maja Remškar, Hrvoje Petković, Rolf Müller
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12870-020-2293-x

Nerylneryl diphosphate is the precursor of serrulatane, viscidane and cembrane-type diterpenoids in Eremophila species
Cited by: 19
Author(s): Oliver Gericke, Nikolaj L. Hansen, Gustav Blichfeldt Pedersen, Louise Kjærulff, Dan Luo, Dan Stærk, Birger Lindberg Møller, Irini Pateraki, Allison M. Heskes
Software Mentions: 1
Published: over 4 years ago

10.1186/s12934-020-01434-w

Comparative metabolomics of Phialemonium curvatum as an omnipotent fungus cultivated on crude palm oil versus glucose
Cited by: 2
Author(s): Arief Izzairy Zamani, Susann Barig, Sarah Ibrahim, Hirzun Mohd Yusof, Julia Ibrahim, Jaime Yoke Sum Low, Shwu Fun Kua, Syarul Nataqain Baharum, K.‐Peter Stahmann, Chyan Leong Ng
Software Mentions: 1
Published: about 4 years ago

10.1186/s12934-017-0758-x

Increasing on-target cleavage efficiency for CRISPR/Cas9-induced large fragment deletion in Myxococcus xanthus
Cited by: 18
Author(s): Yingjie Yang, Ye Wang, Zhifeng Li, Ya Gong, Peng Zhang, Wenchao Hu, Duohong Sheng, Yuezhong Li
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-020-02686-9

Hormonal and metabolites responses in Fusarium wilt-susceptible and -resistant watermelon plants during plant-pathogen interactions
Cited by: 10
Author(s): Deepak M. Kasote, G.K. Jayaprakasha, Kevin Ong, Kevin Crosby, Bhimanagouda S. Patil
Software Mentions: 1
Published: about 4 years ago

10.1128/AEM.02403-15

Multiplexed Integrating Plasmids for Engineering of the Erythromycin Gene Cluster for Expression in Streptomyces spp. and Combinatorial Biosynthesis
Cited by: 19
Author(s): Bahgat Fayed, David A. Ashford, Ahmed M. Hashem, Magdy A. Amin, Omaima N. El‐Gazayerly, Matthew A. Gregory, Margaret C. M. Smith
Software Mentions: 1
Published: almost 9 years ago

10.1007/s00216-013-7582-x

Aggressive dereplication using UHPLC–DAD–QTOF: screening extracts for up to 3000 fungal secondary metabolites
Cited by: 120
Author(s): Andreas Klitgaard, Anne Iversen, Mikael Rørdam Andersen, Thomas Ostenfeld Larsen, Jens Christian Frisvad, Kristian Fog Nielsen
Software Mentions: 1
Published: almost 11 years ago

10.1186/1475-2859-10-37

Overexpression of human virus surface glycoprotein precursors induces cytosolic unfolded protein response in Saccharomyces cerevisiae
Cited by: 19
Author(s): Evaldas Čiplys, Dhanraj Samuel, Mindaugas Juozapaitis, Kęstutis Sasnauskas, Rimantas Slibinskas
Software Mentions: 1
Published: over 13 years ago

10.1186/1475-2859-12-31

Reconstruction of the biosynthetic pathway for the core fungal polyketide scaffold rubrofusarin in Saccharomyces cerevisiae
Cited by: 52
Author(s): Peter Rugbjerg, Michael Næsby, Uffe Hasbro Mortensen, Rasmus John Normand Frandsen
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2229-10-252

Integration of deep transcriptome and proteome analyses reveals the components of alkaloid metabolism in opium poppy cell cultures
Cited by: 106
Author(s): Isabel Desgagné‐Penix, Morgan F. Khan, David C. Schriemer, Dustin Cram, J Nowak, Peter J. Facchini
Software Mentions: 1
Published: about 14 years ago

10.1111/1751-7915.13722

Phytoplankton trigger the production of cryptic metabolites in the marine actinobacterium Salinispora tropica
Cited by: 14
Author(s): Audam Chhun, Despoina Sousoni, Maria del Mar Aguiló-Ferretjans, Lijiang Song, Christophe Corre, Joseph Alexander Christie-Oleza
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0192804

Targeted liquid chromatography tandem mass spectrometry to quantitate wheat gluten using well-defined reference proteins
Cited by: 35
Author(s): Kathrin Schalk, Peter Koehler, Katharina Anne Scherf
Software Mentions: 1
Published: almost 7 years ago

10.3390/mps1010009

Method for the Routine Determination of Accurate Masses by Triple Quadrupole Mass Spectrometry
Cited by: 0
Author(s): Pedro A. Segura, Killian Barry, Emmanuel Eysseric, Shawn Gallagher‐Duval, Philippe Venne, Guillaume Bélanger
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12891-016-1059-y

Biomarkers of systemic inflammation in farmers with musculoskeletal disorders; a plasma proteomic study
Cited by: 21
Author(s): Bijar Ghafouri, Anders Carlsson, Sara Holmberg, Anders Thelin, Christer Tagesson
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0079974

Lincomycin Biosynthesis Involves a Tyrosine Hydroxylating Heme Protein of an Unusual Enzyme Family
Cited by: 24
Author(s): Jitka Novotná, Jana Olšovská, Petr Novák, Peter Mojzeš, Radka Chaloupková, Zdeněk Kameník, J. Spížek, Eva Kutějová, Marketa Sagova‐Mareckova, P. Tichý, Jiřı́ Damborský, Jiřı́ Janata
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0105343

Diagnosing Impaired Glucose Tolerance Using Direct Infusion Mass Spectrometry of Blood Plasma
Cited by: 25
Author(s): Petr G. Lokhov, Oxana P. Trifonova, Dmitry L. Maslov, Elena E. Balashova, Alexander I. Archakov, Ekaterina A. Shestakova, Marina V. Shestakova, Ivan I. Dedov
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2180-10-219

Characterization and functional analysis of seven flagellin genes in Rhizobium leguminosarum bv. viciae. Characterization of R. leguminosarum flagellins
Cited by: 31
Author(s): Dinah D. Tambalo, Denise E. Bustard, Kate L. Del Bel, Susan F. Koval, Morgan F. Khan, Michael F. Hynes
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0091789

Comparative Proteomic Analysis of Experimental Evolution of the Bacillus cereus-Ketogulonicigenium vulgare Co-Culture
Cited by: 15
Author(s): Qian Ma, Yang Zou, Yajin Lv, Hao Song, Yuan Yang
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0227543

Impact of posttranslational modifications on atomistic structure of fibrinogen
Cited by: 14
Author(s): Žofie Sovová, Jana Štikarová, Jiřina Kaufmanová, Pavel Májek, Jiřı́ Suttnar, Pavel Šácha, Martin Malý, Jan E. Dyr
Software Mentions: 1
Published: almost 5 years ago

10.1007/s11306-015-0926-0

Mass spectrometry imaging of amino neurotransmitters: a comparison of derivatization methods and application in mouse brain tissue
Cited by: 73
Author(s): Clara Esteve, Else A. Tolner, Reinald Shyti, Arn M. J. M. van den Maagdenberg, Liam A. McDonnell
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2180-14-158

OmpU as a biomarker for rapid discrimination between toxigenic and epidemic Vibrio cholerae O1/O139 and non-epidemic Vibrio cholerae in a modified MALDI-TOF MS assay
Cited by: 17
Author(s): Armand Paauw, Hein Trip, Marcin Niemcewicz, Ricela E. Sellek, Jonathan M.E. Heng, Roos H. Mars‐Groenendijk, A.L. de Jong, Joanna A. Majchrzykiewicz-Koehorst, Jaran Strand Olsen, Evgeni Tsivtsivadze
Software Mentions: 1
Published: almost 11 years ago

10.3390/antiox8100460

Enhanced Recovery of Antioxidant Compounds from Hazelnut (Corylus avellana L.) Involucre Based on Extraction Optimization: Phytochemical Profile and Biological Activities
Cited by: 36
Author(s): Marius Emil Rusu, Ionel Fizeșan, Anca Pop, Ana-Maria Gheldiu, Andrei Mocan, Gianina Crişan, Laurian Vlase, Felicia Loghin, Daniela-Saveta Popa, Ioan Tomuță
Software Mentions: 1
Published: about 5 years ago

10.1007/s00216-020-02661-1

Evaluation of LC-MS and LC×LC-MS in analysis of zebrafish embryo samples for comprehensive lipid profiling
Cited by: 17
Author(s): Mengmeng Xu, Jessica Legradi, P.E.G. Leonards
Software Mentions: 1
Published: over 4 years ago

10.1007/s00216-018-1414-y

Affinity profiling of monoclonal antibody and antibody-drug-conjugate preparations by coupled liquid chromatography-surface plasmon resonance biosensing
Cited by: 20
Author(s): Dina Lakayan, Rob Haselberg, Rabah Gahoual, Govert W. Somsen, Jeroen Kool
Software Mentions: 1
Published: about 6 years ago

10.3390/metabo11080489

Rapid Identification of Common Secondary Metabolites of Medicinal Herbs Using High-Performance Liquid Chromatography with Evaporative Light Scattering Detector in Extracts
Cited by: 8
Author(s): Kiran Amir Ali, Asghar Ali, Muhammad Noman Khan, Saeedur Rahman, Shaheen Faizi, Muhammad Ali, Shaden A. M. Khalifa, Hesham R. El-Seedi, Syed Ghulam Musharraf
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0065810

Modified Lipoprotein-Derived Lipid Particles Accumulate in Human Stenotic Aortic Valves
Cited by: 32
Author(s): Satu Lehti, Reijo Käkelä, Sohvi Hörkkö, Outi Kummu, Satu Helske-Suihko, Markku Kupari, Kalervo Werkkala, Petri T. Kovanen, Katariina Öörni
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2180-12-189

A proteomic investigation of Fusobacterium nucleatum alkaline-induced biofilms
Cited by: 30
Author(s): Jactty Chew, Peter Zilm, Janet Fuss, N. J. Gully
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0041922

Modulating Uranium Binding Affinity in Engineered Calmodulin EF-Hand Peptides: Effect of Phosphorylation
Cited by: 58
Author(s): Romain Pardoux, Sandrine Sauge‐Merle, David Lemaire, Pascale Delangle, Luc Guilloreau, Jean-Marc Adriano, Catherine Berthomieu
Software Mentions: 1
Published: over 12 years ago

10.3390/metabo9110277

Evaluation of Dried Blood Spot Sampling for Clinical Metabolomics: Effects of Different Papers and Sample Storage Stability
Cited by: 31
Author(s): Oxana P. Trifonova, Dmitry L. Maslov, Elena E. Balashova, Petr G. Lokhov
Software Mentions: 1
Published: about 5 years ago

10.3390/antiox8090417

Biological and Chemical Insights of Beech (Fagus sylvatica L.) Bark: A Source of Bioactive Compounds with Functional Properties
Cited by: 40
Author(s): Corneliu Tănase, Andrei Mocan, Sanda Coșarcă, Alexandru Gâvan, Alexandru Nicolescu, Ana-Maria Gheldiu, Dan Cristian Vodnar, Daniela-Lucia Muntean, O. Crisan
Software Mentions: 1
Published: about 5 years ago

10.3390/metabo10010013

Generation of a Collision Cross Section Library for Multi-Dimensional Plant Metabolomics Using UHPLC-Trapped Ion Mobility-MS/MS
Cited by: 46
Author(s): Mark J. Schroeder, S. Meyer, Heino M. Heyman, Aiko Barsch, Lloyd W. Sumner
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0095919

Derivation and Osmotolerance Characterization of Three Immortalized Tilapia (Oreochromis mossambicus) Cell Lines
Cited by: 33
Author(s): Alison M. Gardell, Qin Qin, Robert H. Rice, Johnathan Li, Dietmar Kültz
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0065221

The Spt-Ada-Gcn5 Acetyltransferase (SAGA) Complex in Aspergillus nidulans
Cited by: 17
Author(s): Paraskevi Georgakopoulos, Robin Lockington, Joseph F. Kelly
Software Mentions: 1
Published: over 11 years ago

10.3390/metabo8040056

Metabolomics of Two Pecan Varieties Provides Insights into Scab Resistance
Cited by: 7
Author(s): Zhentian Lei, Clayton Kranawetter, Barbara W. Sumner, David V. Huhman, Daniel J. Wherritt, Andrew L. Thomas, Charles T. Rohla, Lloyd W. Sumner
Software Mentions: 1
Published: about 6 years ago

10.1186/s12866-019-1575-7

Peptidoglycan-type analysis of the N-acetylmuramic acid auxotrophic oral pathogen Tannerella forsythia and reclassification of the peptidoglycan-type of Porphyromonas gingivalis
Cited by: 6
Author(s): Valentina M. T. Mayer, Isabel Hottmann, Rudolf Figl, Friedrich Altmann, Christoph Mayer, Christina Schäffer
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pntd.0000532

Immunogenic Salivary Proteins of Triatoma infestans: Development of a Recombinant Antigen for the Detection of Low-Level Infestation of Triatomines
Cited by: 35
Author(s): Alexandra Schwarz, Stefan Helling, Nicolas Collin, Clarissa Teixeira, Nora Medrano-Mercado, Jen C. C. Hume, Teresa C.F. Assumpção, Katrin Marcus, Christian Stephan, Helmut E. Meyer, José M. C. Ribeiro, Peter F. Billingsley, Jesús G. Valenzuela, Jeremy M. Sternberg, G. A. Schaub
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pgen.1009282

Inducible expression of (pp)pGpp synthetases in Staphylococcus aureus is associated with activation of stress response genes
Cited by: 18
Author(s): Petra Horvatek, Andrea Salzer, Andrew Magdy Fekry Hanna, Fabio Lino Gratani, Daniela Keinhörster, Natalya Korn, Marina Borisova, Christoph Mayer, Dominik Rejman, Ulrike Mäder, Christiane Wolz
Software Mentions: 1
Published: almost 4 years ago

10.3390/metabo11070438

Metabolomic Approaches to Studying the Response to Drought Stress in Corn (Zea mays) Cobs
Cited by: 8
Author(s): Isabella Gaffney, J. Brett Sallach, Julie Wilson, Edmund T. Bergström, Jane Thomas‐Oates
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0094857

Formation of Sclerotia and Production of Indoloterpenes by Aspergillus niger and Other Species in Section Nigri
Cited by: 53
Author(s): Jens Christian Frisvad, Lene Maj Petersen, Ellen Kirstine Lyhne, Thomas Ostenfeld Larsen
Software Mentions: 1
Published: over 10 years ago

10.3390/plants9030355

Dynamic of Phenolic Compounds, Antioxidant Activity, and Yield of Rhubarb under Chemical, Organic and Biological Fertilization
Cited by: 15
Author(s): Alexandru Cojocaru, Laurian Vlase, N. Munteanu, Teodor Stan, Gabriel-Ciprian Teliban, Marian Burducea, Vasile Stoleru
Software Mentions: 1
Published: over 4 years ago

10.3390/metabo9030046

Ozone and Wounding Stresses Differently Alter the Temporal Variation in Formylated Phloroglucinols in Eucalyptus globulus Leaves
Cited by: 9
Author(s): Bin Liu, Bruna Marques dos Santos, Arooran Kanagendran, Elizabeth Heather Jakobsen Neilson
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-11-45

Novel OBP genes similar to hamster Aphrodisin in the bank vole, Myodes glareolus
Cited by: 30
Author(s): Romana Stopková, Zbyněk Zdráhal, Štěpán Ryba, Ondřej Šedo, Martin Šandera, Pavel Stopka
Software Mentions: 1
Published: almost 15 years ago

10.1007/s00216-017-0235-8

Determination of true ratios of different N-glycan structures in electrospray ionization mass spectrometry
Cited by: 36
Author(s): Clemens Grünwald‐Gruber, A. Thader, Daniel Maresch, Thomas Dalik, Friedrich Altmann
Software Mentions: 1
Published: over 7 years ago

10.1186/s13007-017-0258-3

High-throughput detection of antioxidants in mulberry fruit using correlations between high-resolution mass and activity profiles of chromatographic fractions
Cited by: 13
Author(s): Yeji Park, Si Hyun Seong, Min Sun Kim, Sang Wan Seo, Mee Ree Kim, Hyun Sik Kim
Software Mentions: 1
Published: almost 7 years ago

10.1186/1746-4811-9-15

Simultaneous molecular formula determinations of natural compounds in a plant extract using 15 T Fourier transform ion cyclotron resonance mass spectrometry
Cited by: 13
Author(s): Kyu Hwan Park, Min Sun Kim, Seung-Jin Baek, Ik Hyun Bae, Sang-Wan Seo, Jong-Jin Kim, Yong Kook Shin, Young Moo Lee, Hyun Sik Kim
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0186395

The fate of lysine: Non-targeted stable isotope analysis reveals parallel ways for lysine catabolization in Phaeobacter inhibens
Cited by: 6
Author(s): L.C. Reimer, Sabine Eva Will, Dietmar Schomburg
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0118850

Lincosamide Synthetase—A Unique Condensation System Combining Elements of Nonribosomal Peptide Synthetase and Mycothiol Metabolism
Cited by: 26
Author(s): Jiřı́ Janata, Stanislav Kadlčík, Markéta Koběrská, Dana Ulanová, Zdeněk Kameník, Petr Novák, Jan Kopecký, Jitka Novotná, Bojana Radojevic, Kamila Plháčková, Radekgazak Gazak, Lucie Najmanová
Software Mentions: 1
Published: over 9 years ago

10.3390/md19020108

Chitin Degradation Machinery and Secondary Metabolite Profiles in the Marine Bacterium Pseudoalteromonas rubra S4059
Cited by: 12
Author(s): Xiyan Wang, Thomas Isbrandt, Mikael Lenz Strube, Sara Skøtt Paulsen, Maike Wennekers Nielsen, Yannick Buijs, Erwin M. Schoof, Thomas Ostenfeld Larsen, Lone Gram, Sheng-Da Zhang
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0138270

Changes in Brain Metallome/Metabolome Pattern due to a Single i.v. Injection of Manganese in Rats
Cited by: 21
Author(s): Katharina Neth, Marianna Lucio, Alesia Walker, Julia Zorn, Philippe Schmitt‐Kopplin, Bernhard Michalke
Software Mentions: 1
Published: about 9 years ago

10.3390/ph12040176

In Vitro Characterization and Stability Profiles of Antibody–Fluorophore Conjugates Derived from Interchain Cysteine Cross-Linking or Lysine Bioconjugation
Cited by: 6
Author(s): Camille Martin, Guillaume Brachet, Cyril Colas, Émilie Allard-Vannier, Claire Kizlik-Masson, Charles Esnault, Renaud Respaud, Caroline Denevault‐Sabourin, Igor Chourpa, Valérie Gouilleux-Gruart, Marie‐Claude Viaud‐Massuard, Nicolas Joubert
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0082079

Differentially Expressed Proteins Associated with Fusarium Head Blight Resistance in Wheat
Cited by: 44
Author(s): Xianghui Zhang, Jianming Fu, Yasuaki Hiromasa, Hongyu Pan, Guihua Bai
Software Mentions: 1
Published: almost 11 years ago

10.7717/peerj.3407

A simple electroelution method for rapid protein purification: isolation and antibody production of alpha toxin fromClostridium septicum
Cited by: 6
Author(s): Lorena Vázquez-Iglesias, Borja Estefanell-Ucha, Leticia Barcia-Castro, Marı́a Páez de la Cadena, Paula Álvarez-Chaver, Daniel Ayude-Vázquez, Francisco Javier Rodrı́guez-Berrocal
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0092096

A Novel Serine Protease Secreted by Medicinal Maggots Enhances Plasminogen Activator-Induced Fibrinolysis
Cited by: 16
Author(s): Mariena J. A. van der Plas, Asser S. Andersen, Nazir Sheresma, Nico H. van Tilburg, P.R. Oestergaard, Karen A. Krogfelt, Jaap T. van Dissel, Paul J. Hensbergen, Rogier M. Bertina, Peter H. Nibbering
Software Mentions: 1
Published: over 10 years ago

10.3390/md17070395

Integrated Gas Chromatograph-Mass Spectrometry (GC/MS) and MS/MS-Based Molecular Networking Reveals the Analgesic and Anti-Inflammatory Phenotypes of the Sea Slater Ligia exotica
Cited by: 8
Author(s): Yue Yang, Quanbin Zhang, Jing Wang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0113097

Characterization of the Secretomes of Two Vibrios Pathogenic to Mollusks
Cited by: 15
Author(s): Stéphanie Madec, Vianney Pichereau, Annick Jacq, Mathieu Paillard, Claire Boisset, Fabienne Guérard, Christine Paillard, Jean‐Louis Nicolas
Software Mentions: 1
Published: about 10 years ago

10.3390/vaccines7020041

A HER2-Displaying Virus-Like Particle Vaccine Protects from Challenge with Mammary Carcinoma Cells in a Mouse Model
Cited by: 7
Author(s): Lisa Nika, Sara Cuadrado-Castano, Guha Asthagiri Arunkumar, Clemens Grünwald‐Gruber, Meagan McMahon, Krisztina Koczka, Adolfo Garcı́a-Sastre, Florian Krammer, Reingard Grabherr
Software Mentions: 1
Published: over 5 years ago

10.1111/j.1365-2958.2011.07542.x

Molecular and proteomic analyses highlight the importance of ubiquitination for the stress resistance, metabolic adaptation, morphogenetic regulation and virulence of Candida albicans
Cited by: 59
Author(s): Michelle Leach, David Stead, Evelyn Argo, Donna M. MacCallum, Alistair J. P. Brown
Software Mentions: 1
Published: almost 14 years ago

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