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Projects: pypi: DAStk

https://packages.ecosyste.ms/registries/pypi.org/packages/DAStk

Differential ATAC-seq toolkit
14 versions
Latest release: over 3 years ago
3,039 downloads last month

Enhanced Analysis
Educational Contributors: margaret.gruca@colorado.edu ignacio.tripodi@colorado.edu
Repository Activity:
Repository Owner: Dowell Lab (organization) Academic
README Analysis: DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +40 Educational commit emails
    2 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +26 Science terms in README
    13 scientific terms found in README
  • +10 DOI references
    1 DOI references found in README
  • +6 Academic links
    1 academic links found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -25 Non-science indicators
    1 non-scientific terms found
Very Likely Science (100)

Papers Mentioning DAStk 4

10.1186/s13059-020-1929-3
From reads to insight: a hitchhiker’s guide to ATAC-seq data analysis
Cited by: 231
Author(s): Feng Yan, David Powell, David Curtis, Nicholas C. Wong
Software Mentions: 21
Published: over 6 years ago
10.1016/j.ccell.2020.03.001
Loss of CHD1 Promotes Heterogeneous Mechanisms of Resistance to AR-Targeted Therapy via Chromatin Dysregulation
Cited by: 84
Author(s): Zeda Zhang, Chuanli Zhou, Xiaoling Li, Spencer Barnes, Su Deng, Elizabeth Hoover, Chi Chao Chen, Young Sun Lee, Yanxiao Zhang, Choushi Wang, Lauren Metang, Chao Wu, Carla Rodriguez Tirado, Nickolas A. Johnson, John Wongvipat, Kristina Navrazhina, Zhen Cao, Danielle Choi, Chen‐Hung Huang, Eliot Linton, Xiaoping Chen, Yupu Liang, Christopher E. Mason, Elisa de Stanchina, Wassim Abida, Amaia Lujambio, Sheng Li, Scott W. Lowe, Joshua T. Mendell, Venkat S. Malladi, Charles L. Sawyers, Ping Mu
Software Mentions: 5
Published: over 6 years ago
10.1172/jci.insight.144294
The MUC5B-associated variant rs35705950 resides within an enhancer subject to lineage- and disease-dependent epigenetic remodeling
Cited by: 20
Author(s): Fabienne Gally, Sarah K. Sasse, Jonathan S. Kurche, Margaret Gruca, Jonathan Cardwell, Tsukasa Okamoto, Hong Wei Chu, Xiaomeng Hou, Olivier Poirion, Justin Buchanan, Sebastian Preißl, Bing Ren, Sean P. Colgan, Robin D. Dowell, Ivana V. Yang, David A. Schwartz, Anthony N. Gerber
Software Mentions: 5
Published: over 5 years ago
10.3390/molecules23051136
Detecting Differential Transcription Factor Activity from ATAC-Seq Data
Cited by: 33
Author(s): Ignacio J. Tripodi, Mary A. Allen, Robin Dowell
Software Mentions: 2
Published: about 8 years ago