Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1172/jci.insight.144294

https://doi.org/10.1172/jci.insight.144294

The MUC5B-associated variant rs35705950 resides within an enhancer subject to lineage- and disease-dependent epigenetic remodeling

Cited by: 20
Author(s): Fabienne Gally, Sarah K. Sasse, Jonathan S. Kurche, Margaret Gruca, Jonathan Cardwell, Tsukasa Okamoto, Hong Wei Chu, Xiaomeng Hou, Olivier Poirion, Justin Buchanan, Sebastian Preißl, Bing Ren, Sean P. Colgan, Robin D. Dowell, Ivana V. Yang, David A. Schwartz, Anthony N. Gerber
Published: almost 4 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
Papers that mentioned: 34
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: Signac
Analysis of Single-Cell Chromatin Data
Papers that mentioned: 24
pypi: DAStk
Differential ATAC-seq toolkit
Papers that mentioned: 4