Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Checkm

https://packages.ecosyste.ms/registries/pypi.org/packages/Checkm

Checkm - create reports on the checksums of sets of files or URLs resources.
12 versions
Latest release: over 13 years ago
38 downloads last month

Papers Mentioning Checkm 6

Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies
Cited by: 107
Author(s): Simon Güllert, Martin Fischer, Dmitrij Turaev, Britta Noebauer, Nele Ilmberger, Bernd Wemheuer, Malik Alawi, Thomas Rattei, Rolf Daniel, Ruth A. Schmitz, Adam Grundhoff, Wolfgang R. Streit
Software Mentions: 3
Published: over 8 years ago

10.1186/s13068-018-1214-9

A metagenomic analysis of the camel rumen’s microbiome identifies the major microbes responsible for lignocellulose degradation and fermentation
Cited by: 82
Author(s): Javad Gharechahi, Ghasem Hosseini Salekdeh
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.01849

Reclassification of Paenibacillus riograndensis as a Genomovar of Paenibacillus sonchi: Genome-Based Metrics Improve Bacterial Taxonomic Classification
Cited by: 24
Author(s): Fernando Hayashi Sant’Anna, Adriana Ambrosini, Rocheli de Souza, Gabriela de Carvalho Fernandes, Evelise Bach, Eduardo Balsanelli, Valter A. Baura, Luciana Fernandes de Brito, Volker F. Wendisch, Fábio de Oliveira Pedrosa, Emanuel Maltempi de Souza, Luciane Maria Pereira Passaglia
Software Mentions: 2
Published: about 7 years ago

10.1073/pnas.2104378118

Global biogeography of chemosynthetic symbionts reveals both localized and globally distributed symbiont groups
Cited by: 11
Author(s): Jay T Osvatic, Laetitia G. E. Wilkins, Lukas Leibrecht, Matthieu Leray, Sarah Zauner, Julia Polzin, Yolanda Camacho, Olivier Gros, Jan A. van Gils, Jonathan A. Eisen, Jillian M. Petersen, Benedict Yuen
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-016-3058-7

Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production
Cited by: 17
Author(s): Linda van der Graaf–van Bloois, Birgitta Duim, William G. Miller, Ken J. Forbes, Jaap A. Wagenaar, Aldert Zomer
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0183925

Development of a real-time PCR for detection of Staphylococcus pseudintermedius using a novel automated comparison of whole-genome sequences
Cited by: 11
Author(s): Koen M. Verstappen, Loes Huijbregts, Mirlin Spaninks, Jaap A. Wagenaar, Ad C. Fluit, Birgitta Duim
Software Mentions: 1
Published: about 7 years ago