Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: AlignQC

https://packages.ecosyste.ms/registries/pypi.org/packages/AlignQC

Python and R based tool for assessing the quality of alignments
2 versions
Latest release: about 7 years ago
39 downloads last month

Papers Mentioning AlignQC 6

10.3390/cancers13051136
Nanopore Sequencing Reveals Global Transcriptome Signatures of Mitochondrial and Ribosomal Gene Expressions in Various Human Cancer Stem-like Cell Populations
Cited by: 13
Author(s): Kaya E. Witte, Oliver Hertel, Beatrice A. Windmöller, Laureen P. Helweg, Anna L. Höving, Cornelius Knabbe, Tobias Busche, Johannes F. W. Greiner, Jörn Kalinowski, Thomas Noll, F. Mertzlufft, Morris Beshay, Jesco Pfitzenmaier, Barbara Kaltschmidt, Christian Kaltschmidt, Constanze Banz‐Jansen, Matthias Simon
Software Mentions: 6
Published: over 3 years ago
10.3390/v11121132
Rapid, Unbiased PRRSV Strain Detection Using MinION Direct RNA Sequencing and Bioinformatics Tools
Cited by: 22
Author(s): Shaoyuan Tan, Cheryl M.T. Dvorak, Michael P. Murtaugh
Software Mentions: 4
Published: almost 5 years ago
10.12688/f1000research.10571.2
Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis
Cited by: 332
Author(s): Jason L. Weirather, Mariateresa de Cesare, Yunhao Wang, Paolo Piazza, Vittorio Sebastiano, Xiu‐Jie Wang, David Buck, Kin Fai Au
Software Mentions: 4
Published: over 7 years ago
10.12688/wellcomeopenres.11246.3
Robust long-read native DNA sequencing using the ONT CsgG Nanopore system
Cited by: 24
Author(s): Jean-Michel Carter, Shobbir Hussain
Software Mentions: 3
Published: about 6 years ago
10.1186/s13007-020-00629-x
Analysis and comprehensive comparison of PacBio and nanopore-based RNA sequencing of the Arabidopsis transcriptome
Cited by: 60
Author(s): Jiawen Cui, Nan Shen, Zhaogeng Lu, Guolu Xu, Yuyao Wang, Biao Jin
Software Mentions: 3
Published: over 4 years ago
10.3389/fgene.2020.00406
Analysis of the Mouse Y Chromosome by Single-Molecule Sequencing With Y Chromosome Enrichment
Cited by: 9
Author(s): Yuki Yano, Tomoki Chiba, Hiroshi Asahara
Software Mentions: 2
Published: over 4 years ago