Projects: cran: vegan

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/vegan

Community Ecology Package
87 versions
Latest release: almost 4 years ago
202 dependent packages
91,351 downloads last month

Enhanced Analysis
Educational Contributors: ghanni@upenn.edu pminchi@siue.edu hezibuba@mail.tau.ac.il
Repository Activity:
Repository Owner: vegandevs (organization)
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +60 Educational commit emails
    3 contributors with educational email addresses
  • +2 Science terms in README
    1 scientific terms found in README
Penalties:
  • -15 No science keywords
    No scientific terms found in keywords/classifiers

Very Likely Science (100)

Papers Mentioning vegan 6,903

10.1371/journal.pone.0241371
High nitrogen concentration alter microbial community in Allium fistulosum rhizosphere
Cited by: 10
Author(s): Chen Zhao, Haifeng Ni, Lin Zhao, Lin Zhou, Orlando Borrás‐Hidalgo, Rongzong Cui
Software Mentions: 1
Published: almost 6 years ago
10.3389/fvets.2020.585730
Sanitary Conditions Affect the Colonic Microbiome and the Colonic and Systemic Metabolome of Female Pigs
Cited by: 9
Author(s): M.F.W. te Pas, A.J.M. Jansman, L. Kruijt, Yvonne van der Meer, Jacques Vervoort, Dirkjan Schokker
Software Mentions: 1
Published: almost 6 years ago
10.3389/fvets.2018.00196
Fecal Hyodeoxycholic Acid Is Correlated With Tylosin-Induced Microbiome Changes in Growing Pigs
Cited by: 7
Author(s): Michaela P. Trudeau, Yuyin Zhou, Fernando Leite, Andrés Gómez, Pedro E Urriola, Gerald C Shurson, Chi Chen, Richard E. Isaacson
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0120608
The Source of the River as a Nursery for Microbial Diversity
Cited by: 42
Author(s): Luiz Felipe Valter de Oliveira, Rogério Margis
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0242138
Mycobiome changes in the vitreous of post fever retinitis patients
Cited by: 10
Author(s): Kotakonda Arunasri, Malleswarapu Mahesh, Gumpili Sai Prashanthi, Rajagopalaboopathi Jayasudha, Sama Kalyana Chakravarthy, Mudit Tyagi, Rajeev Reddy Pappuru, Sisinthy Shivaji
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0036290
Individual to Community-Level Faunal Responses to Environmental Change from a Marine Fossil Record of Early Miocene Global Warming
Cited by: 4
Author(s): Christina L. Belanger
Software Mentions: 1
Published: over 14 years ago
10.1186/1471-2148-10-245
Mating system drives negative associations between morphological features in Schistosomatidae
Cited by: 3
Author(s): Sophie Beltran‐Bech, Yves Desdevises, Julien Portela, Jérôme Boissier
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pone.0184517
Improving the antiprotozoal effect of saponins in the rumen by combination with glycosidase inhibiting iminosugars or by modification of their chemical structure
Cited by: 13
Author(s): E. Ramos-Morales, Gabriel de la Fuente, Robert J. Nash, Radek Bragança, S. Duval, Marc E. Bouillon, Martina Lahmann, C. J. Newbold
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0211718
Genetic dissection of agronomic and quality traits based on association mapping and genomic selection approaches in durum wheat grown in Southern Spain
Cited by: 25
Author(s): Rosa Mérida-García, Guozheng Liu, Sang He, Victoria González-Dugo, Gabriel Dorado, Sergio Gálvez, Ignacio Solís, Pablo J. Zarco‐Tejada, Jochen C. Reif, Pilar Hernández
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0198087
Effects of straw return on bacterial communities in a wheat-maize rotation system in the North China Plain
Cited by: 22
Author(s): Dali Yu, Zhiguo Wen, Xiumei Li, Xiaojun Song, Huijun Wu, Peilong Yang
Software Mentions: 1
Published: over 8 years ago
10.1186/s12862-019-1379-2
Phyloproteomic and functional analyses do not support a split in the genus Borrelia (phylum Spirochaetes)
Cited by: 11
Author(s): Agustı́n Estrada-Peña, Alejandro Cabezas-Cruz
Software Mentions: 1
Published: over 7 years ago
10.3389/fvets.2020.569004
Small Mammals as Carriers/Hosts of Leptospira spp. in the Western Amazon Forest
Cited by: 7
Author(s): Luciana dos Santos Medeiros, Susan Christina Braga Domingos, Maria Isabel Nogueira Di Azevedo, Rui Carlos Peruquetti, Narianne Ferreira de Albuquerque, Paulo Sérgio D’Andrea, André Luis de Moura Botelho, Charle Ferreira Crisóstomo, Anahi S. Vieira, Gabriel Martins, Bernardo Rodrigues Teixeira, Filipe Aníbal Carvalho-Costa, Walter Lilenbaum
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-018-30769-z
Rhizobacterial community structure in response to nitrogen addition varied between two Mollisols differing in soil organic carbon
Cited by: 7
Author(s): Tengxiang Lian, Zhenhua Yu, Junjie Liu, Yansheng Li, Guanghua Wang, Xiaobing Liu, Stephen J. Herbert, Jianzhong Wu, Jian Jin
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-019-42667-z
Metagenomic insights into effects of wheat straw compost fertiliser application on microbial community composition and function in tobacco rhizosphere soil
Cited by: 14
Author(s): Yongjian Yang, Song-jie Zhang, Ning Li, Hongli Chen, Hao Jia, Xiaoning Song, Liu Guoshun, Chao Ni, Zhizhong Wang, Hongbo Shao
Software Mentions: 1
Published: over 7 years ago
10.3390/ani11010233
Is Intestinal Bacterial Diversity Enhanced by Trans-Species Spread in the Mixed-Species Flock of Hooded Crane (Grus monacha) and Bean Goose (Anser fabalis) Wintering in the Lower and Middle Yangtze River Floodplain?
Cited by: 6
Author(s): Zhuqing Yang, Lizhi Zhou
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0056329
Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana
Cited by: 588
Author(s): Natacha Bodenhausen, Matthew Horton, Joy Bergelson
Software Mentions: 1
Published: over 13 years ago
10.3389/fvets.2020.556764
Increasing the Sustainability of Maize Grain Production by Using Arbuscular Mycorrhizal Fungi Does Not Affect the Rumen of Dairy Cattle (Bos taurus) and Buffalo (Bubalus bubalis)
Cited by: 4
Author(s): A. Chiariotti, Joan E. Edwards, Gerben D. A. Hermes, G. Catillo, David Meo Zilio, Sabrina Di Giovanni, Hauke Smidt, L. Buttazzoni
Software Mentions: 1
Published: almost 6 years ago
10.3389/fvets.2020.601874
In vivo Microbiome Profiling of the Luminal and Mucosal Surface of the Duodenum Using a Cannulated Yearling Bovine Model
Cited by: 2
Author(s): Ricardo M. Stockler, Keah V. Higgins, Haley Hallowell, Erin S. Groover, Elizabeth M. Hiltbold, Benjamin W. Newcomer, Paul H. Walz
Software Mentions: 1
Published: almost 6 years ago
10.3389/fvets.2021.712226
The Spatial and Temporal Characterization of Gut Microbiota in Broilers
Cited by: 17
Author(s): Qianqian Zhou, Fangren Lan, Xiaochang Li, Wei Yan, Congjiao Sun, Junying Li, Ning Yang, Chaoliang Wen
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0074136
Increasing Seriousness of Plant Invasions in Croplands of Eastern China in Relation to Changing Farming Practices: A Case Study
Cited by: 8
Author(s): Guoqi Chen, HE Yun-he, Sheng Qiang
Software Mentions: 1
Published: almost 13 years ago
10.1186/s12862-019-1413-4
Evidence of local adaptation in a waterfall-climbing Hawaiian goby fish derived from coupled biophysical modeling of larval dispersal and post-settlement selection
Cited by: 9
Author(s): Kristine N. Moody, Johanna L. K. Wren, Donald R. Kobayashi, Michael J. Blum, Margaret B. Ptacek, Richard W. Blob, Robert J. Toonen, Heiko L. Schoenfuss, Michael J. Childress
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0065435
Sea Otters Homogenize Mussel Beds and Reduce Habitat Provisioning in a Rocky Intertidal Ecosystem
Cited by: 25
Author(s): Gerald G. Singh, Russell W. Markel, Rebecca G. Martone, Anne K. Salomon, Christopher D. G. Harley, Kai M. A. Chan
Software Mentions: 1
Published: over 13 years ago
10.1186/1742-9994-10-29
Only distance matters – non-choosy females in a poison frog population
Cited by: 42
Author(s): Ivonne Meuche, Oscar Brusa, K. Eduard Linsenmair, Alexander Keller, Heike Pröhl
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0156232
Post-Disturbance Stability of Fish Assemblages Measured at Coarse Taxonomic Resolution Masks Change at Finer Scales
Cited by: 27
Author(s): Daniela Ceccarelli, Michael J. Emslie, Zoe T. Richards
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0173450
Regional changes in psychotropic use among Finnish persons with newly diagnosed Alzheimer’s disease in 2005-2011
Cited by: 6
Author(s): Anna‐Maija Tolppanen, Ari Voutilainen, Heidi Taipale, Antti Tanskanen, Piia Lavikainen, Marjaana Koponen, Jari Tiihonen, Sirpa Hartikainen
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0167764
Emerging New Crop Pests: Ecological Modelling and Analysis of the South American Potato Psyllid Russelliana solanicola (Hemiptera: Psylloidea) and Its Wild Relatives
Cited by: 16
Author(s): Mindy M. Syfert, Liliya Štarhová Serbina, Daniel Burckhardt, Sandra Knapp, Diana M. Percy
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0086291
Parrotfish Size: A Simple yet Useful Alternative Indicator of Fishing Effects on Caribbean Reefs?
Cited by: 50
Author(s): Henri Vallès, Hazel A. Oxenford
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0053289
Changes in Phlebotomine Sand Fly Species Composition Following Insecticide Thermal Fogging in a Rural Setting of Western Panamá
Cited by: 25
Author(s): José E. Calzada, Azäel Saldaña, Chystrie Rigg, Anayansí Valderrama, Luz Romero, Luis Fernando Chaves
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0189957
Ectomycorrhizal fungal communities in endangered Pinus amamiana forests
Cited by: 17
Author(s): Masaya Murata, Seiichi Kanetani, Kazuhide Nara
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0150520
Past Human Disturbance Effects upon Biodiversity are Greatest in the Canopy; A Case Study on Rainforest Butterflies
Cited by: 27
Author(s): Andrew Whitworth, Jaime Villacampa, Alice R. Brown, Ruthmery Pillco Huarcaya, R. S. Downie, Ross MacLeod
Software Mentions: 1
Published: over 10 years ago
10.1534/g3.119.400043
Genetically Distinct Behavioral Modules Underlie Natural Variation in Thermal Performance Curves
Cited by: 8
Author(s): Gregory W. Stegeman, Scott Everet Baird, William S. Ryu, Asher D. Cutter
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0226500
Response of rhizosphere bacterial community of Taxus chinensis var. mairei to temperature changes
Cited by: 4
Author(s): YU Xiang-hua, Xinxing Liu, Xueduan Liu
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0072764
Functional Roles Affect Diversity-Succession Relationships for Boreal Beetles
Cited by: 18
Author(s): Heloise Gibb, Therese Johansson, Fredrik Stenbacka, Joakim Hjältén
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0175851
Ocean acidification effects on mesozooplankton community development: Results from a long-term mesocosm experiment
Cited by: 19
Author(s): María Algueró-Muñiz, Santiago Álvarez-Fernández, Peter Thor, Lennart T. Bach, Mario Espósito, Henriette G. Horn, Ursula Ecker, Julia Langer, Jan Taucher, Arne M. Malzahn, Ulf Riebesell, Maarten Boersma
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0254257
Multiple drivers of ecological change in Arctic lakes and ponds
Cited by: 0
Author(s): Konrad Gajewski
Software Mentions: 1
Published: about 5 years ago
10.3390/genes3010001
Comparison of the Fecal Microbiota in Feral and Domestic Goats
Cited by: 18
Author(s): Kassandra M. De Jesús-Laboy, Filipa Godoy-Vitorino, Yvette M. Piceno, Lauren M. Tom, Ida G. Pantoja-Feliciano, Michelle Jovanne Rivera-Rivera, Gary L. Andersen, María Gloria Domínguez-Bello
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0141644
The Impact of the Latest Danian Event on Planktic Foraminiferal Faunas at ODP Site 1210 (Shatsky Rise, Pacific Ocean)
Cited by: 21
Author(s): Sofie Jehle, André Bornemann, Arne Deprez, Robert P. Speijer
Software Mentions: 1
Published: almost 11 years ago
10.3390/ani9100761
Bovine Breeds Identification by Trichological Analysis
Cited by: 4
Author(s): Gisele Aparecida Félix, Maria Clorínda Soares Fíoravantí, Martino Cassandro, Nicola Tormen, Juliana Quadros, R. S. Juliano, A. A. do Egito, Maria Ivete de Moura, Ubiratan Piovezan
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0074371
454 Pyrosequencing to Describe Microbial Eukaryotic Community Composition, Diversity and Relative Abundance: A Test for Marine Haptophytes
Cited by: 113
Author(s): Elianne Egge, Lucie Bittner, Tom Andersen, Stéphane Audic, Colomban de Vargas, Bente Edvardsen
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0064177
Patterns of Cave Biodiversity and Endemism in the Appalachians and Interior Plateau of Tennessee, USA
Cited by: 62
Author(s): Matthew L. Niemiller, Kirk S. Zigler
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0134402
Effects of Residue Management on Decomposition in Irrigated Rice Fields Are Not Related to Changes in the Decomposer Community
Cited by: 21
Author(s): Anja Schmidt, Katharina John, G. S. Arida, Harald Auge, Roland Brandl, Finbarr G. Horgan, Stefan Hotes, Leonardo Márquez, Nico Radermacher, Josef Settele, Volkmar Wolters, Martin Schädler
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0111190
Shifts in Species Interactions Due to the Evolution of Functional Differences between Endemics and Non-Endemics: An Endemic Syndrome Hypothesis
Cited by: 18
Author(s): Courtney E. Gorman, Brad M. Potts, Jennifer A. Schweitzer, Joseph K. Bailey
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0199810
Enhanced preservation of the human intestinal microbiota by ridinilazole, a novel Clostridium difficile-targeting antibacterial, compared to vancomycin
Cited by: 41
Author(s): Cheleste M. Thorpe, Anne Kane, Julia Yu Fong Chang, Albert Tai, Richard Vickers, David R. Snydman
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0031544
Fire History from Life-History: Determining the Fire Regime that a Plant Community Is Adapted Using Life-Histories
Cited by: 5
Author(s): Graeme Armstrong, Benjamin L. Phillips
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0137681
Long Term Development of Gut Microbiota Composition in Atopic Children: Impact of Probiotics
Cited by: 44
Author(s): Nicole B. Rutten, D. M. W. Gorissen, Anat Eck, Laetitia E. M. Niers, Arine M. Vlieger, Isolde Besseling-van der Vaart, Andries E. Budding, Paul H. M. Savelkoul, Cornelis K. van der Ent, Ger T. Rijkers
Software Mentions: 1
Published: almost 11 years ago
10.1186/1471-2148-13-41
Contrasting parasite communities among allopatric colour morphs of the Lake Tanganyika cichlid Tropheus
Cited by: 37
Author(s): Joost Raeymaekers, Pascal I. Hablützel, Arnout Grégoir, Jolien Bamps, Anna K Roose, Maarten Pieterjan Vanhove, Maarten Van Steenberge, Antoine Pariselle, Tine Huyse, Jos Snoeks, Filip Volckaert
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0206931
Natural succession and clearcutting as drivers of environmental heterogeneity and beta diversity in North American boreal forests
Cited by: 12
Author(s): Sergio García-Tejero, John R. Spence, John O’Halloran, S. Bourassa, Anne Oxbrough
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0136946
The Effect of Long-Term Continuous Cropping of Black Pepper on Soil Bacterial Communities as Determined by 454 Pyrosequencing
Cited by: 114
Author(s): Wu Xiong, Zhigang Li, Hongjun Liu, Cong Xue, Ruifu Zhang, Huasong Wu, Rong Li
Software Mentions: 1
Published: about 11 years ago
10.1038/s41598-019-40235-z
Examination of the temporal and spatial dynamics of the gut microbiome in newborn piglets reveals distinct microbial communities in six intestinal segments
Cited by: 43
Author(s): Ying Liu, Zhijun Zheng, Lihuai Yu, Sen Wu, Li Sun, Shenglong Wu, Qian Xu, Shunfeng Cai, Nan Qin, Wenbin Bao
Software Mentions: 1
Published: over 7 years ago
10.3390/genes11121516
Carriage and Gene Content Variability of the pESI-Like Plasmid Associated with Salmonella Infantis Recently Established in United States Poultry Production
Cited by: 19
Author(s): Elizabeth A. McMillan, Jamie Wasilenko, Kaitlin A. Tagg, Jessica C. Chen, Mustafa Simmons, Sushim K. Gupta, Glenn E. Tillman, Jason P. Folster, Charlene R. Jackson, Jonathan G. Frye
Software Mentions: 1
Published: over 5 years ago
10.1186/s13568-019-0889-z
Abiotic environmental factors override phytoplankton succession in shaping both free-living and attached bacterial communities in a highland lake
Cited by: 7
Author(s): Huan Wang, Rixiang Zhu, Xiaolin Zhang, Yun Li, Leyi Ni, Ping Xie, Hong Shen
Software Mentions: 1
Published: almost 7 years ago
10.3390/ani10122341
Effects of Oat Hay Content in Diets on Nutrient Metabolism and the Rumen Microflora in Sheep
Cited by: 19
Author(s): Xiaopeng An, Lingyun Zhang, Jing Luo, Shengguo Zhao, Ting Jiao
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0228406
The gut bacterial communities across six grasshopper species from a coastal tallgrass prairie
Cited by: 15
Author(s): Melani K. Muratore, Chelse M. Prather, Yvonne Sun
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0197256
Intestinal microbiota composition is altered according to nutritional biorhythms in the leopard coral grouper (Plectropomus leopardus)
Cited by: 31
Author(s): Miyuki Mekuchi, Taiga Asakura, Kenji Sakata, Tomohiko Yamaguchi, Kazuhisa Teruya, Jun Kikuchi
Software Mentions: 1
Published: over 8 years ago
10.1590/S1415-475738420150025
Characterization of the core microbiota of the drainage and surrounding soil of a Brazilian copper mine
Cited by: 19
Author(s): Letícia Bianca Pereira, Renato Vicentini, Laura Maria Mariscal Ottoboni
Software Mentions: 1
Published: almost 11 years ago
10.1590/1678-4685-GMB-2019-0028
Metabarcoding reveals that a non-nutritive sweetener and sucrose yield similar gut microbiota patterns in Wistar rats
Cited by: 3
Author(s): Tiago Falcón, Kelly Carraro Foletto, Marina Siebert, Denise Entrudo Pinto, Michael Éverton Andrades, Marcello Casaccia Bertoluci
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0126962
Patterns in Species Persistence and Biomass Production in Soil Microcosms Recovering from a Disturbance Reject a Neutral Hypothesis for Bacterial Community Assembly
Cited by: 6
Author(s): Fen-Guo Zhang, Quanguo Zhang
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0075396
Evaluating Ecosystem Services Provided by Non-Native Species: An Experimental Test in California Grasslands
Cited by: 13
Author(s): Cláudia Stein, Lauren M. Hallett, W. Stanley Harpole, Katharine N. Suding
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0128583
Recovering More than Tree Cover: Herbivores and Herbivory in a Restored Tropical Dry Forest
Cited by: 22
Author(s): Iris Juan-Baeza, Cristina Martínez‐Garza, Ek del‐Val
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0015685
Forest Plant and Bird Communities in the Lau Group, Fiji
Cited by: 15
Author(s): Janet Franklin, David W. Steadman
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0123715
Plant Community Responses to Simultaneous Changes in Temperature, Nitrogen Availability, and Invasion
Cited by: 5
Author(s): Elise S. Gornish, Thomas E. Miller
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0060135
Metabolomic Comparison of Saccharomyces cerevisiae and the Cryotolerant Species S. bayanus var. uvarum and S. kudriavzevii during Wine Fermentation at Low Temperature
Cited by: 73
Author(s): María López-Malo, Amparo Querol, José Manuel Guillamón
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0116345
Avian Egg Odour Encodes Information on Embryo Sex, Fertility and Development
Cited by: 44
Author(s): Ben Webster, William Hayes, Thomas W. Pike
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0228133
Neonatal microbiota development and the effect of early life antibiotics are determined by two distinct settler types
Cited by: 33
Author(s): Anat Eck, Nicole B. Rutten, Maartje Singendonk, Ger T. Rijkers, Paul H. M. Savelkoul, Clemens B. Meijssen, Clarissa E. Crijns, Johanna H. Oudshoorn, Andries E. Budding, Arine M. Vlieger
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0162734
Association of Chorioamnionitis with Aberrant Neonatal Gut Colonization and Adverse Clinical Outcomes
Cited by: 30
Author(s): Kriti Puri, Diana H. Taft, Namasivayam Ambalavanan, Kurt Schibler, Ardythe L. Morrow, Suhas G. Kallapur
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0120664
Bacterial Communities Associated with Host-Adapted Populations of Pea Aphids Revealed by Deep Sequencing of 16S Ribosomal DNA
Cited by: 106
Author(s): Jean-Pierre Gauthier, Yannick Outreman, Lucie Mieuzet, Jean‐Christophe Simon
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0112465
Estimating the Spatial and Temporal Distribution of Species Richness within Sequoia and Kings Canyon National Parks
Cited by: 3
Author(s): Wathen Steve, James H. Thorne, Andrew Holguin, Mark W. Schwartz
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0199495
Assessment of wild grapevine (Vitis vinifera ssp. sylvestris) chlorotypes and accompanying woody species in the Eastern Adriatic region
Cited by: 9
Author(s): Lukrecija Butorac, Katarina Hančević, Katarina Lukšić, Željko Škvorc, Mario Leko, Erika Maul, Goran Zdunić
Software Mentions: 1
Published: about 8 years ago
10.1186/s12862-016-0595-2
The dual role of Andean topography in primary divergence: functional and neutral variation among populations of the hummingbird, Metallura tyrianthina
Cited by: 30
Author(s): Phred M. Benham, Christopher C. Witt
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0188409
Patterns and determinants of plant biodiversity in non-commercial forests of eastern China
Cited by: 13
Author(s): Chuping Wu, Mark Vellend, Yuan WeiGao, Bo Jiang, Jiajia Li, Aihua Shen, Jinliang Liu, Jiang Zhu, Mingjian Yu
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0051257
Seasonal Variations Alter the Impact of Functional Traits on Plankton Dynamics
Cited by: 9
Author(s): Marcia Rocha, David A. Vasseur, Ursula Gaedke
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0169079
Habitat Use and Spatial Variability of Hawkfishes with a Focus on Colour Polymorphism in Paracirrhites forsteri
Cited by: 2
Author(s): Darren J. Coker, Veronica Chaidez, Michael L. Berumen
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0142621
Orchid Species Richness along Elevational and Environmental Gradients in Yunnan, China
Cited by: 25
Author(s): Shi‐Bao Zhang, Wen-Yun Chen, Jialin Huang, Yurong Bi, Xuefei Yang
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0113905
Can Wide Consultation Help with Setting Priorities for Large-Scale Biodiversity Monitoring Programs?
Cited by: 0
Author(s): Frédéric Boivin, Anouk Simard, Pedro R. Peres‐Neto
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0125787
Influence of Edaphic, Climatic, and Agronomic Factors on the Composition and Abundance of Nitrifying Microorganisms in the Rhizosphere of Commercial Olive Crops
Cited by: 32
Author(s): Joan Cáliz, Miguel Montes-Borrego, Xavier Triadó‐Margarit, Madis Metsis, Blanca B. Landa, Emilio O. Casamayor
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0055505
Relationships between Host Phylogeny, Host Type and Bacterial Community Diversity in Cold-Water Coral Reef Sponges
Cited by: 57
Author(s): Sandra Schöttner, Friederike Hoffmann, Paco Cárdenas, Hans Tore Rapp, Antje Boetius, Alban Ramette
Software Mentions: 1
Published: over 13 years ago
10.1186/1471-2148-13-149
Parasite-mediated selection of major histocompatibility complex variability in wild brandt’s voles (Lasiopodomys brandtii) from Inner Mongolia, China
Cited by: 16
Author(s): Min Zhang, Hongxuan He
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0065735
Habitat Use by Fishes in Coral Reefs, Seagrass Beds and Mangrove Habitats in the Philippines
Cited by: 98
Author(s): Kentaro Honda, Yohei Nakamura, Masahiro Nakaoka, Wilfredo H. Uy, Miguel D. Fortes
Software Mentions: 1
Published: about 13 years ago
10.1186/s12862-021-01871-0
Altered precipitation and root herbivory affect the productivity and composition of a mesic grassland
Cited by: 0
Author(s): Kirk Barnett, Scott N. Johnson, Sarah L. Facey, Eleanor V. J. Gibson‐Forty, Raúl Ochoa‐Hueso, Sally A. Power
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0011757
Serpentine Soils Do Not Limit Mycorrhizal Fungal Diversity
Cited by: 42
Author(s): Sara Branco, Richard H. Ree
Software Mentions: 1
Published: about 16 years ago
10.1371/journal.pone.0087115
Gene Duplication and Phenotypic Changes in the Evolution of Mammalian Metabolic Networks
Cited by: 11
Author(s): Michaël Bekaert, Gavin C. Conant
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0045520
High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding
Cited by: 129
Author(s): Sung-Chur Sim, Allen Van Deynze, Karl Stoffel, David S. Douches, Daniel G. Zarka, Martin W. Ganal, Roger T. Chetelat, Samuel F. Hutton, John W. Scott, Richard G. Gardner, Dilip R. Panthee, Martha A. Mutschler, James R. Myers, David M. Francis
Software Mentions: 1
Published: almost 14 years ago
10.1186/s13568-017-0471-5
Comparison of the bacterial community composition in the granular and the suspended phase of sequencing batch reactors
Cited by: 35
Author(s): Enikö Barbara Szabo, Raquel Liébana, Malte Hermansson, Oskar Modin, Frank Persson, Britt‐Marie Wilén
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0090060
Seasonal Variation in the Fate of Seeds under Contrasting Logging Regimes
Cited by: 14
Author(s): Marina Fleury, Ricardo Ribeiro Rodrigues, Hilton Thadeu Zarate do Couto, Mauro Galetti
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0221102
Diversity and specificity of lipid patterns in basal soil food web resources
Cited by: 18
Author(s): Jakob Kühn, Kathlin Schweitzer, Liliane Rueß
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0199080
Non-nutritive sweeteners possess a bacteriostatic effect and alter gut microbiota in mice
Cited by: 78
Author(s): Qiao‐Ping Wang, Duncan Browman, Herbert Herzog
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0215741
Synanthropy and diversity of Phlebotominae in an area of intense transmission of visceral leishmaniasis in the South Pantanal floodplain, Midwest Brazil
Cited by: 6
Author(s): Suellem Petilim Gomes Barrios, Luciana Escalante Pereira, Neiva Zandonaide Nazário Monaco, Gustavo Graciolli, Aline Etelvina Casaril, Jucelei de Oliveira Moura Infran, Everton Falcão de Oliveira, Wagner de Souza Fernandes, Antônio Conceição Paranhos Filho, Alessandra Gutierrez de Oliveira
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0134623
Secretor Status Is Strongly Associated with Microbial Alterations Observed during Pregnancy
Cited by: 17
Author(s): Himanshu Kumar, Pirjo Wacklin, Massalin Nakphaichit, Eliisa Löyttyniemi, Somak Chowdhury, Yogesh S. Shouche, Jaana Mättö, Erika Isolauri, Seppo Salminen
Software Mentions: 1
Published: about 11 years ago
10.1186/s12862-021-01903-9
Structuring of plant communities across agricultural landscape mosaics: the importance of connectivity and the scale of effect
Cited by: 4
Author(s): Michael J. McLeish, Adrián Peláez, Israel Pagán, Rosario G. Gavilán, Aurora Fraile, Fernando Garcı́a-Arenal
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0167266
Diversity and Impacts of Mining on the Non-Volant Small Mammal Communities of Two Vegetation Types in the Brazilian Amazon
Cited by: 12
Author(s): Natália Carneiro Ardente, Átilla Colombo Ferreguetti, Donald Gettinger, Pricila Leal, Ana Cristina Mendes‐Oliveira, Fernanda Martins-Hatano, Helena Godoy Bergallo
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0174235
Asymmetry in dentition and shape of pharyngeal arches in the clonal fish Chrosomus eos-neogaeus: Phenotypic plasticity and developmental instability
Cited by: 7
Author(s): Christelle Leung, Kevin K. Duclos, Thomas Grünbaum, Richard Cloutier, Bernard Angers
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0035472
Sensitivity of Metrics of Phylogenetic Structure to Scale, Source of Data and Species Pool of Hummingbird Assemblages along Elevational Gradients
Cited by: 18
Author(s): Sebastián González‐Caro, Juan L. Parra, Catherine H. Graham, Jimmy A. McGuire, Carlos Daniel Cadena
Software Mentions: 1
Published: over 14 years ago
10.1111/gbi.12437
Microbial succession and dynamics in meromictic Mono Lake, California
Cited by: 9
Author(s): Alexandra A. Phillips, Daan R. Speth, Laurence G. Miller, Xingchen Wang, Fenfang Wu, Patricia M. Medeiros, Danielle R. Monteverde, M. R. Osburn, William M. Berelson, Hannah L. Betts, Reto S. Wijker, Sean W. Mullin, Hope A. Johnson, Victoria J. Orphan, Woodward W. Fischer, Alex L. Sessions
Software Mentions: 1
Published: over 5 years ago
10.1186/1472-6785-12-3
Palms, peccaries and perturbations: widespread effects of small-scale disturbance in tropical forests
Cited by: 11
Author(s): Simon A. Queenborough, Margaret R. Metz, Thorsten Wiegand, Renato Valencia
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0184725
Contaminants of emerging concern in tributaries to the Laurentian Great Lakes: II. Biological consequences of exposure
Cited by: 24
Author(s): Linnea M. Thomas, Zachary G. Jorgenson, Mark E. Brigham, Steven J. Choy, Joseph Moore, Jo A. Banda, Daniel J. Gefell, Thomas Minarik, Heiko L. Schoenfuss
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0118543
Adenovirus and Herpesvirus Diversity in Free-Ranging Great Apes in the Sangha Region of the Republic of Congo
Cited by: 27
Author(s): Tracie A. Seimon, Sarah H. Olson, Kerry Jo Lee, Gail Emilia Rosen, Alain Ondzie, Kenneth Neill Cameron, Patricia Reed, Simon J. Anthony, Damien O. Joly, William B. Karesh, Denise McAloose, W. Ian Lipkin
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0244817
Host-parasitoid associations in marine planktonic time series: Can metabarcoding help reveal them?
Cited by: 14
Author(s): Laura Käse, Katja Metfies, Stefan Neuhaus, Maarten Boersma, Karen Helen Wiltshire, Alexandra Kraberg
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0113507
Does Forest Continuity Enhance the Resilience of Trees to Environmental Change?
Cited by: 19
Author(s): Goddert von Oheimb, Werner Härdtle, Dieter Eckstein, Hans-Hermann Engelke, Timo Hehnke, Bernd Wagner, Andreas Fichtner
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0053350
A Comprehensive Census of Microbial Diversity in Hot Springs of Tengchong, Yunnan Province China Using 16S rRNA Gene Pyrosequencing
Cited by: 182
Author(s): Weiguo Hou, Shang Wang, Hailiang Dong, Hongchen Jiang, Brandon R. Briggs, Joseph P. Peacock, Qiuyuan Huang, Liuqin Huang, Geng Wu, Xiao‐Yang Zhi, Wenjun Li, Jeremy A. Dodsworth, Brian P. Hedlund, Chuanlun Zhang, Hilairy E. Hartnett, Paul Dijkstra, Bruce A. Hungate
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0245965
Genetic diversity of native and cultivated Ugandan Robusta coffee (Coffea canephora Pierre ex A. Froehner): Climate influences, breeding potential and diversity conservation
Cited by: 17
Author(s): Catherine Kiwuka, Eva Goudsmit, Rémi Tournebize, Sinara Oliveira de Aquino, Jacob C. Douma, Laurence Bellanger, Dominique Crouzillat, Piet Stoffelen, Ucu Sumirat, Hyacinthe Legnaté, Pierre Marraccini, Alexandre de Kochko, Alan Carvalho Andrade, John Wasswa Mulumba, Pascal Musoli, Niels P. R. Anten, Valérie Poncet
Software Mentions: 1
Published: over 5 years ago