cran: vegan | Projects | Ecosyste.ms: Papers

10.7717/peerj.9986

Soil fungal networks are more sensitive to grazing exclusion than bacterial networks
Cited by: 5
Author(s): Lingling Chen, Jiajia Shi, Zhihua Bao, Taogetao Baoyin
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.7356

Variation in denitrifying bacterial communities along a primary succession in the Hailuogou Glacier retreat area, China
Cited by: 7
Author(s): Yan Bai, Xiying Huang, Xiangrui Zhou, Quanju Xiang, Ke Zhao, Xiumei Yu, Qiang Chen, Hao Jiang, Nyima Tashi, Xue Gao, Yunfu Gu
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.4575

Oligotrophic wetland sediments susceptible to shifts in microbiomes and mercury cycling with dissolved organic matter addition
Cited by: 10
Author(s): Emily B. Graham, R. S. Gabor, Shon Schooler, Diane M. McKnight, Diana R. Nemergut, Joseph E. Knelman
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.9117

Characteristics of the soil microbial community in the forestland of Camellia oleifera
Cited by: 15
Author(s): Peng Zhang, Zhiyi Cui, Mengqing Guo, Ruchun Xi
Software Mentions: 1
Published: over 6 years ago

10.1128/mSystems.00458-19

Using DNA Metabarcoding To Evaluate the Plant Component of Human Diets: a Proof of Concept
Cited by: 19
Author(s): Aspen T. Reese, Tyler R. Kartzinel, Brianna L. Petrone, Peter J. Turnbaugh, Robert M. Pringle, Lawrence A. David
Software Mentions: 1
Published: almost 7 years ago

10.1093/aobpla/plv110

Composition of fungal soil communities varies with plant abundance and geographic origin
Cited by: 12
Author(s): Vanessa Reininger, Laura B. Martínez‐García, Laura A. Sanderson, Pedro M. Antunes
Software Mentions: 1
Published: about 11 years ago

10.7717/peerj.6738

Examining the assumptions of heterogeneity-based management for promoting plant diversity in a disturbance-prone ecosystem
Cited by: 0
Author(s): Daniel J. McGlinn, Michael W. Palmer
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.5166

Minimizing confounders and increasing data quality in murine models for studies of the gut microbiome
Cited by: 43
Author(s): Jun Miyoshi, Vanessa Leone, Kentaro Nobutani, Mark W. Musch, Kristina Martinez, Yunwei Wang, Sawako Miyoshi, Alexandria M. Bobe, A. Murat Eren, Eugene B. Chang
Software Mentions: 1
Published: about 8 years ago

10.1128/mSystems.00124-20

Shotgun Metagenomics of Gut Microbiota in Humans with up to Extreme Longevity and the Increasing Role of Xenobiotic Degradation
Cited by: 72
Author(s): Simone Rampelli, Matteo Soverini, Federica D’Amico, Monica Barone, Teresa Tavella, Daniela Monti, Miriam Capri, Annalisa Astolfi, Patrizia Brigidi, Elena Biagi, Claudio Franceschi, Silvia Turroni, Marco Candela
Software Mentions: 1
Published: over 6 years ago

10.1093/aobpla/plaa020

Effect of aridity on species assembly in gypsum drylands: a response mediated by the soil affinity of species
Cited by: 7
Author(s): Arántzazu L. Luzuriaga, Pablo Ferrandis, Joel Flores, Adrián Escudero
Software Mentions: 1
Published: over 6 years ago

10.1128/mSystems.00290-20

Exoenzymes as a Signature of Microbial Response to Marine Environmental Conditions
Cited by: 13
Author(s): Manoj Kamalanathan, Shawn M. Doyle, Chen Xu, Amanda M. Achberger, Terry L. Wade, Kathleen A. Schwehr, Peter H. Santschi, Jason B. Sylvan, Antonietta Quigg
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.6967

High resistance to climatic variability in a dominant tundra shrub species
Cited by: 5
Author(s): Victoria T. González, Mikel Moriana-Armendariz, Snorre B. Hagen, Bente Lindgård, Rigmor Reiersen, Kari Anne Bråthen
Software Mentions: 1
Published: over 7 years ago

10.3390/microorganisms7120641

The Simplified Human Intestinal Microbiota (SIHUMIx) Shows High Structural and Functional Resistance against Changing Transit Times in In Vitro Bioreactors
Cited by: 28
Author(s): Stephanie Serena Schäpe, Jannike Lea Krause, Beatrice Engelmann, Katarina Fritz-Wallace, Florian Schattenberg, Zishu Liu, Susann Müller, Nico Jehmlich, Ulrike Rolle-Kampczyk, Gunda Herberth, Martin von Bergen
Software Mentions: 1
Published: almost 7 years ago

10.3390/nu11122958

Enteral Nutrition in Pediatric Patients Undergoing Hematopoietic SCT Promotes the Recovery of Gut Microbiome Homeostasis
Cited by: 58
Author(s): Federica D’Amico, Elena Biagi, Simone Rampelli, Jessica Fiori, Daniele Zama, Matteo Soverini, Monica Barone, Davide Leardini, Edoardo Muratore, Arcangelo Prete, Roberto Gotti, Andrea Pession, Riccardo Masetti, Patrizia Brigidi, Silvia Turroni, Marco Candela
Software Mentions: 1
Published: almost 7 years ago

10.3390/microorganisms8091352

Molecular Characterization of the Myoliquefactive Fish Parasite Kudoa mirabilis (Cnidaria, Kudoidae) from SW Indian Ocean and Its Phylogenetic Relationship with the Kudoa thyrsites Species Complex
Cited by: 9
Author(s): Lucilla Giulietti, Egil Karlsbakk, Paolo Cipriani, Salome Daniel Shayo, Julia E. Storesund, Arne Levsen
Software Mentions: 1
Published: about 6 years ago

10.3390/microorganisms7090320

Predictors of Obesity among Gut Microbiota Biomarkers in African American Men with and without Diabetes
Cited by: 25
Author(s): Elena Barengolts, Stefan J. Green, George E. Chlipala, Brian T. Layden, Yuval Eisenberg, Medha Priyadarshini, Lara R. Dugas
Software Mentions: 1
Published: about 7 years ago

10.1128/mSystems.00475-20

Plant and Soil Development Cooperatively Shaped the Composition of the phoD -Harboring Bacterial Community along the Primary Succession in the Hailuogou Glacier Chronosequence
Cited by: 9
Author(s): Yan Bai, Quanju Xiang, Ke Zhao, Xiumei Yu, Qiang Chen, Menggen Ma, Hao Jiang, Xiaoping Zhu, Petri Penttinen, Yunfu Gu
Software Mentions: 1
Published: about 6 years ago

10.1093/aobpla/plv075

Environmental correlates for tree occurrences, species distribution and richness on a high-elevation tropical island
Cited by: 16
Author(s): Philippe Birnbaum, Thomas Ibanez, Robin Pouteau, Hervé Vandrot, Vanessa Héquet, Élodie Blanchard, Tanguy Jaffré
Software Mentions: 1
Published: over 11 years ago

10.1128/mSystems.00313-20

The Gut Microbiota-Produced Indole-3-Propionic Acid Confers the Antihyperlipidemic Effect of Mulberry-Derived 1-Deoxynojirimycin
Cited by: 29
Author(s): Yougui Li, Wei Xu, Fang Zhang, Zhong Su, Yan Sun, Jinxi Huo, Jianxun Zhu, Chongming Wu
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms8020198

Planktonic Bacterial and Archaeal Communities in an Artificially Irrigated Estuarine Wetland: Diversity, Distribution, and Responses to Environmental Parameters
Cited by: 4
Author(s): Mingyue Li, Tiezhu Mi, Zhigang Yu, Manman Ma, Yu Zhen
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms8060836

Soil Bacterial Diversity and Potential Functions Are Regulated by Long-Term Conservation Tillage and Straw Mulching
Cited by: 24
Author(s): Chang Liu, Lingling Li, Jinsheng Xie, Jeffrey A. Coulter, Renzhi Zhang, Zhen Luo, Liqun Cai, Lin Lin Wang, Subramaniam Gopalakrishnan
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms6040105

Dynamics of a Perturbed Microbial Community during Thermophilic Anaerobic Digestion of Chemically Defined Soluble Organic Compounds
Cited by: 11
Author(s): Luka Šafarič, Sepehr Shakeri Yekta, Tong Liu, Bo Svensson, Anna Schnürer, David Bastviken, Annika Björn
Software Mentions: 1
Published: almost 8 years ago

10.3390/microorganisms7110525

Distinct Microbial Community of Phyllosphere Associated with Five Tropical Plants on Yongxing Island, South China Sea
Cited by: 11
Author(s): Lijun Bao, Wenyang Cai, Xiaofen Zhang, Jinhong Liu, Hao Chen, Yuansong Wei, Xiuxiu Jia, Zhihui Bai
Software Mentions: 1
Published: almost 7 years ago

10.1128/mSystems.00929-20

Different Arbuscular Mycorrhizal Fungi Cocolonizing on a Single Plant Root System Recruit Distinct Microbiomes
Cited by: 43
Author(s): Jiachao Zhou, Xiaofen Chai, Lin Zhang, Timothy S. George, Fei Wang, Gu Feng
Software Mentions: 1
Published: over 5 years ago

10.1093/aobpla/plu070

Fine-scale genetic differentiation of a temperate herb: relevance of local environments and demographic change
Cited by: 8
Author(s): Yasuhiro Sato, Hiroshi Kudoh
Software Mentions: 1
Published: over 12 years ago

10.1002/ece3.2289

Detecting the small island effect and nestedness of herpetofauna of the West Indies
Cited by: 18
Author(s): De Gao, Gad Perry
Software Mentions: 1
Published: about 10 years ago

10.3390/microorganisms9040714

Diversity of Microorganisms in Biocrusts Surrounding Highly Saline Potash Tailing Piles in Germany
Cited by: 6
Author(s): Ekaterina Pushkareva, Veronika Sommer, Israel Barrantes, Ulf Karsten
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.7373

Gut microbial ecology of the Critically Endangered Fijian crested iguana ( Brachylophus vitiensis ): Effects of captivity status and host reintroduction on endogenous microbiomes
Cited by: 10
Author(s): Samuel J. Eliades, Joseph Brown, Timothy J. Colston, Robert N. Fisher, Jone Niukula, Kim Gray, Jhabar Vadada, Sia Rasalato, Cameron D. Siler
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.1879

Effects of fertilization on microbial abundance and emissions of greenhouse gases (<scp>CH</scp>4 and N2O) in rice paddy fields
Cited by: 29
Author(s): Xianfang Fan, Haiyang Yu, Qingqing Wu, Jing Ma, Hong‐Guang Xu, Jinghui Yang, Zhuang YiQing
Software Mentions: 1
Published: over 10 years ago

10.3390/microorganisms8060834

Intercropping with Potato-Onion Enhanced the Soil Microbial Diversity of Tomato
Cited by: 27
Author(s): Naihui Li, Danmei Gao, Xingang Zhou, Shaocan Chen, Chunxia Li, Fengzhi Wu
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.7140

Response of macroinvertebrate communities to land use and water quality in Wudalianchi Lake
Cited by: 4
Author(s): Xiang Du, Dan Song, Kun Ming, Xing Jin, Huibo Wang, Le Wang, Hui Liu, Chen Zhao, Tangbin Huo
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.4293

Spatial scale‐dependent phylogenetic signal in species distributions along geographic and elevation gradients in a mountainous rangeland
Cited by: 15
Author(s): Maral Pashirzad, Hamid Ejtehadi, Jamil Vaezi, Richard P. Shefferson
Software Mentions: 1
Published: almost 8 years ago

10.1002/ece3.2358

Evidence for ecological speciation via a host shift in the holly leaf miner, Phytomyza glabricola (Diptera: Agromyzidae)
Cited by: 6
Author(s): Julie B. Hébert, Sonja J. Scheffer, David J. Hawthorne
Software Mentions: 1
Published: about 10 years ago

10.1002/ece3.5540

Contrasting diversity patterns of breeding Anatidae in the Northern and Southern Hemispheres
Cited by: 5
Author(s): Qing Zeng, Jessica Reid, Neil Saintilan, Matthew J. Colloff, Guangchun Lei, Lei Wen
Software Mentions: 1
Published: about 7 years ago

10.1002/ece3.4682

Partitioning drivers of spatial genetic variation for a continuously distributed population of boreal caribou: Implications for management unit delineation
Cited by: 10
Author(s): Pauline Priadka, Micheline Manseau, Tim Trottier, Dave Hervieux, Paul Galpern, Philip D. McLoughlin, Paul J. Wilson
Software Mentions: 1
Published: almost 8 years ago

10.3390/microorganisms9051071

In Vitro Fermentation Characteristics and Fiber-Degrading Enzyme Kinetics of Cellulose, Arabinoxylan, β-Glucan and Glucomannan by Pig Fecal Microbiota
Cited by: 19
Author(s): Yu Bai, Xingjian Zhou, Na Li, Jinbiao Zhao, Yue Hao, Shuai Zhang, Hsi-Chi Yang, Yu Pi, Shiyu Tao, Dandan Han, Shuai Zhang, Junjun Wang
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.747

Massive structural and compositional changes over two decades in forest fragments near Kampala, Uganda
Cited by: 7
Author(s): Collins Edward Bulafu, Deborah Baranga, Patrick Mucunguzi, Richard J. Telford, Vigdis Vandvik
Software Mentions: 1
Published: about 13 years ago

10.1002/ece3.1072

Bird and mammal species composition in distinct geographic regions and their relationships with environmental factors across multiple spatial scales
Cited by: 12
Author(s): Rafi Kent, Avi Bar‐Massada, Yohay Carmel
Software Mentions: 1
Published: over 12 years ago

10.1128/mSystems.01334-20

Marine Community Metabolomes Carry Fingerprints of Phytoplankton Community Composition
Cited by: 23
Author(s): Katherine R. Heal, Bryndan P. Durham, Angela K. Boysen, Laura T. Carlson, Wei Qin, François Ribalet, Angelicque E. White, Randelle M. Bundy, E. Virginia Armbrust, Anitra E. Ingalls
Software Mentions: 1
Published: about 5 years ago

10.1002/ece3.7508

Network analyses reveal the role of large snakes in connecting feeding guilds in a species‐rich Amazonian snake community
Cited by: 1
Author(s): Daniela Pinto-Coelho, Marcio Roberto Martins, Paulo R. Guimarães
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.5409

Oribatid mites reveal that competition for resources and trophic structure combine to regulate the assembly of diverse soil animal communities
Cited by: 21
Author(s): Matthew Magilton, Mark Maraun, Mark Emmerson, Tancredi Caruso
Software Mentions: 1
Published: about 7 years ago

10.1002/ece3.2536

Spatial subsidies in spider diets vary with shoreline structure: Complementary evidence from molecular diet analysis and stable isotopes
Cited by: 29
Author(s): Peter A. Hambäck, Elisabeth Weingartner, Love Dalén, Helena Wirta, Tomas Roslin
Software Mentions: 1
Published: almost 10 years ago

10.1002/ece3.5231

Local adaptation does not lead to genome‐wide differentiation in lava flow lizards
Cited by: 12
Author(s): Alexander R. Krohn, Eveline T. Diepeveen, Ke Bi, Erica Bree Rosenblum
Software Mentions: 1
Published: over 7 years ago

10.1002/ece3.927

Changes in ground beetle assemblages above and below the treeline of the<scp>D</scp>olomites after almost 30 years (1980/2009)
Cited by: 44
Author(s): Roberto Pizzolotto, Mauro Gobbi, Pietro Brandmayr
Software Mentions: 1
Published: over 12 years ago

10.1128/mSystems.00252-21

Comparative Genomics Reveals Thermal Adaptation and a High Metabolic Diversity in “ Candidatus Bathyarchaeia”
Cited by: 16
Author(s): Yanling Qi, Paul N. Evans, Yuxian Li, Yang-Zhi Rao, Yan-Ni Qu, Sha Tan, Jian‐Yu Jiao, Ya-Ting Chen, Brian P. Hedlund, Wen‐Sheng Shu, Zheng-Shuang Hua, Wenjun Li
Software Mentions: 1
Published: about 5 years ago

10.1002/ece3.4943

Phenotypic and genetic diversity in aposematic Malagasy poison frogs (genus Mantella )
Cited by: 9
Author(s): Karina Klonoski, Ke Bi, Erica Bree Rosenblum
Software Mentions: 1
Published: over 7 years ago

10.1002/ece3.4809

Environmental DNA metabarcoding of wild flowers reveals diverse communities of terrestrial arthropods
Cited by: 101
Author(s): Philip Francis Thomsen, Eva Egelyng Sigsgaard
Software Mentions: 1
Published: over 7 years ago

10.1007/s10661-021-09094-y

Trends of nutrients and metals in precipitation in northern Germany: the role of emissions and meteorology
Cited by: 1
Author(s): Malte Lorenz, Matthias Brunke
Software Mentions: 1
Published: over 5 years ago

10.1007/s10661-021-09027-9

Comparison of three sampling methods for small-bodied fish in lentic nearshore and open water habitats
Cited by: 3
Author(s): Joseph E. Merz, Jesse T. Anderson, Jesse Wiesenfeld, Steven C. Zeug
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00158-21

Association between Human Genetic Variants and the Vaginal Bacteriome of Pregnant Women
Cited by: 5
Author(s): Wei Fan, Hui Kan, Haiyan Liu, Tianlei Wang, Yining He, Miao Zhang, Yaxin Li, Yijie Li, Meng Wang, Qing Li, Anqun Hu, Zheng Ying
Software Mentions: 1
Published: about 5 years ago

10.1002/ece3.3307

Rhododendron aureum Georgi formed a special soil microbial community and competed with above‐ground plants on the tundra of the Changbai Mountain, China
Cited by: 6
Author(s): Xiaolong Wang, Lin Li, Wei Zhao, Jiaxin Zhao, Xia Chen
Software Mentions: 1
Published: about 9 years ago

10.1002/ece3.7019

Disentangling effects of disturbance severity and frequency: Does bioindication really work?
Cited by: 5
Author(s): Remigiusz Pielech, Patryk Czortek
Software Mentions: 1
Published: over 5 years ago

10.1111/evj.13350

Outbreak of acute larval cyathostominosis – A “perfect storm” of inflammation and dysbiosis
Cited by: 13
Author(s): Nicola Walshe, Grace Mulcahy, Fiona Crispie, Raúl Cabrera‐Rubio, Paul D. Cotter, Hanne Jahns, Vivienne Duggan
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41431-019-0496-0

The Dutch Y-chromosomal landscape
Cited by: 8
Author(s): Eveline Altena, Risha Smeding, Kristiaan J. van der Gaag, Maarten Larmuseau, Ronny Decorte, Oscar Lao, Manfred Kayser, Thirsa Kraaijenbrink, Peter de Knijff
Software Mentions: 1
Published: about 7 years ago

10.1002/eji.201747100

The intestinal microbiota determines the colitis-inducing potential of T-bet-deficient Th cells in mice
Cited by: 11
Author(s): Jakob Zimmermann, Pawel Durek, Anja A. Kühl, Florian Schattenberg, Patrick Maschmeyer, Francesco Siracusa, Katrin Lehmann, Kerstin Westendorf, Melanie Weber, René Riedel, Susann Müller, Andreas Radbruch, Hyun‐Dong Chang
Software Mentions: 1
Published: almost 9 years ago

10.1002/eji.201847692

IFITM proteins drive type 2 T helper cell differentiation and exacerbate allergic airway inflammation
Cited by: 33
Author(s): Diana C. Yánez, Hemant Sahni, Scott R. Ross, Anisha Solanki, Ching‐In Lau, Eleftheria Papaioannou, Alessandro Barbarulo, Rebecca Powell, Ulrike Lange, David J. Adams, Martino Barenco, M. Ono, Fulvio D’Acquisto, Anna L. Furmanski, Tessa Crompton
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00394-020-02392-0

Gut microbiota composition in relation to intake of added sugar, sugar-sweetened beverages and artificially sweetened beverages in the Malmö Offspring Study
Cited by: 22
Author(s): Stina Ramne, Louise Brunkwall, Ulrika Ericson, Nicola Gray, Gunter Kuhnle, Peter M. Nilsson, Marju Orho‐Melander, Emily Sonestedt
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms8040598

Effect of Cobalt, Nickel, and Selenium/Tungsten Deficiency on Mesophilic Anaerobic Digestion of Chemically Defined Soluble Organic Compounds
Cited by: 18
Author(s): Luka Šafarič, Sepehr Shakeri Yekta, Bo Svensson, Anna Schnürer, David Bastviken, Annika Björn
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/6432942

Phenolics and Carbohydrates in Buckwheat Honey Regulate the Human Intestinal Microbiota
Cited by: 23
Author(s): Li Jiang, Minhao Xie, Guijie Chen, Jiangtao Qiao, Hongcheng Zhang, Xiaoxiong Zeng
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms6040124

The Isolation and Identification of Bacteria on Feathers of Migratory Bird Species
Cited by: 2
Author(s): Antonella Giorgio, Salvatore De Bonis, Rosario Balestrieri, Giovanni Rossi, Marco Guida
Software Mentions: 1
Published: almost 8 years ago

10.1002/ece3.3493

How beta diversity and the underlying causes vary with sampling scales in the Changbai mountain forests
Cited by: 13
Author(s): Liangcheng Tan, Chunyu Fan, Chunyu Zhang, Klaus von Gadow, Xiuhua Fan
Software Mentions: 1
Published: almost 9 years ago

10.1002/ece3.2276

Species traits and environmental characteristics together regulate ant‐associated biodiversity
Cited by: 5
Author(s): Kaitlin U. Campbell, Thomas O. Crist
Software Mentions: 1
Published: about 10 years ago

10.1002/ece3.5967

Legacy forest structure increases bird diversity and abundance in aging young forests
Cited by: 11
Author(s): Juliana Hanle, Marlyse C. Duguid, Mark S. Ashton
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.2606

Co‐occurrence patterns in a diverse arboreal ant community are explained more by competition than habitat requirements
Cited by: 47
Author(s): Flávio Camarota, Scott Powell, Adriano S. Melo, Galen V. Priest, Robert J. Marquis, Heraldo L. Vasconcelos
Software Mentions: 1
Published: almost 10 years ago

10.1002/ece3.745

Distinguishing the importance between habitat specialization and dispersal limitation on species turnover
Cited by: 17
Author(s): Shixiong Wang, Xiaoan Wang, Hua Guo, Wei Fan, Haiying Lv, Renyan Duan
Software Mentions: 1
Published: about 13 years ago

10.1002/ece3.5866

Concealed truth: Modeling reveals unique Quaternary distribution dynamics and refugia of four related endemic keystone Abies taxa on the Tibetan Plateau
Cited by: 3
Author(s): Qinli Xiong, Marwa Waseem A. Halmy, Mohammed A. Dakhil, Bipin Pandey, Fengying Zhang, Lin Zhang, Kaiwen Pan, Ting Li, Xiaoming Sun, Xiaogang Wu, Yang Xiao
Software Mentions: 1
Published: almost 7 years ago

10.1002/ece3.2797

Environmental control of the microfaunal community structure in tropical bromeliads
Cited by: 17
Author(s): Pavel Kratina, Jana S. Petermann, Nicholas A. C. Marino, A Macdonald, Diane S. Srivastava
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms8050751

Comparison of the Vitreous Fluid Bacterial Microbiomes between Individuals with Post Fever Retinitis and Healthy Controls
Cited by: 7
Author(s): Kotakonda Arunasri, Malleswarapu Mahesh, Gumpili Sai Prashanthi, Rajagopalaboopathi Jayasudha, Sama Kalyana Chakravarthy, Mudit Tyagi, Rajeev Reddy Pappuru, Sisinthy Shivaji
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0160259

Impact of Commercial Strain Use on Saccharomyces cerevisiae Population Structure and Dynamics in Pinot Noir Vineyards and Spontaneous Fermentations of a Canadian Winery
Cited by: 31
Author(s): Jonathan T. Martiniuk, Braydon Pacheco, G. Russell, Stephanie Tong, Ian Backstrom, Vivien Measday
Software Mentions: 1
Published: about 10 years ago

10.1038/ismej.2017.74

Epibionts dominate metabolic functional potential of Trichodesmium colonies from the oligotrophic ocean
Cited by: 56
Author(s): Kyle R. Frischkorn, Mónica Rouco, Benjamin A. S. Van Mooy, Sonya T. Dyhrman
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0138432

Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing
Cited by: 147
Author(s): Joel F. Gibson, Shadi Shokralla, Colin J. Curry, Donald J. Baird, Wendy Monk, Ian W. King, Mehrdad Hajibabaei
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0115733

Where Is the Extended Phenotype in the Wild? The Community Composition of Arthropods on Mature Oak Trees Does Not Depend on the Oak Genotype
Cited by: 9
Author(s): Martin M. Goßner, Martin Brändle, Roland Brandl, Johannes Bail, Jörg Müller, Lars Opgenoorth
Software Mentions: 1
Published: over 11 years ago

10.1111/eva.12707

Plant-pollinator interactions over time: Pollen metabarcoding from bees in a historic collection
Cited by: 30
Author(s): Annemarie Gous, Dirk Swanevelder, Connal Eardley, Sandi Willows‐Munro
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0069174

Hierarchical Dynamics of Ecological Communities: Do Scales of Space and Time Match?
Cited by: 15
Author(s): David G. Angeler, Emma Göthe, Richard K. Johnson
Software Mentions: 1
Published: about 13 years ago

10.1111/eva.12298

Hybridization and the spread of the apple maggot fly,Rhagoletis pomonella(Diptera: Tephritidae), in the northwestern United States
Cited by: 19
Author(s): Tracy Arcella, Glen R. Hood, Thomas H. Q. Powell, Sheina B. Sim, Wee L. Yee, Dietmar Schwarz, Scott P. Egan, Robert B. Goughnour, James J. Smith, Jeffrey L. Feder
Software Mentions: 1
Published: about 11 years ago

10.1111/eva.13201

Proximity to crop relatives determines some patterns of natural selection in a wild sunflower
Cited by: 4
Author(s): Nora Mitchell, Scott Chamberlain, Kenneth D. Whitney
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0173811

Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape
Cited by: 34
Author(s): Hayley C. King, Tanya Khera-Butler, Phillip James, Brian B. Oakley, Girume Erenso, Abraham Aseffa, Rob Knight, Elizabeth M. H. Wellington, Orin Courtenay
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0132879

Shifts in Abundance and Diversity of Soil Ammonia-Oxidizing Bacteria and Archaea Associated with Land Restoration in a Semi-Arid Ecosystem
Cited by: 8
Author(s): Chen Zhu, Wenliang Wu, Xingling Shao, L i Li, Yanbin Guo, Guo-Chun Ding
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0029380

Assessment of Variation in Bacterial Composition among Microhabitats in a Mangrove Environment Using DGGE Fingerprints and Barcoded Pyrosequencing
Cited by: 83
Author(s): Daniel F. R. Cleary, Kornelia Smalla, Lêda C. Mendonça-Hagler, Newton C. M. Gomes
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0222646

Low genetic differentiation yet high phenotypic variation in the invasive populations of Spartina alterniflora in Guangxi, China
Cited by: 7
Author(s): Feifei Li, Lu Gong, Junsheng Li, Xiaoyan Liu, Caiyun Zhao
Software Mentions: 1
Published: almost 7 years ago

10.1002/evl3.75

Parallel genetic adaptation across environments differing in mode of growth or resource availability
Cited by: 61
Author(s): Caroline B. Turner, C. W. Marshall, Vaughn S. Cooper
Software Mentions: 1
Published: about 8 years ago

10.1111/evo.12496

WEAK CROSSABILITY BARRIER BUT STRONG JUVENILE SELECTION SUPPORTS ECOLOGICAL SPECIATION OF THE HYBRID PINE PINUS DENSATA ON THE TIBETAN PLATEAU
Cited by: 21
Author(s): Zhao Wang, Jianghong Meng, Baosheng Wang, Lisha Zhang, Yong Xu, Qing‐Yin Zeng, Yue Li, Jian‐Feng Mao, Xiaoru Wang
Software Mentions: 1
Published: almost 12 years ago

10.1007/s10493-015-9954-8

Cryptic speciation in the Acari: a function of species lifestyles or our ability to separate species?
Cited by: 64
Author(s): Anna Skoracka, Sara Magalhães, B. G. Rector, Lechosław Kuczyński
Software Mentions: 1
Published: about 11 years ago

10.1007/s10493-021-00635-1

Mite communities (Acari: Mesostigmata, Oribatida) in the red belt conk, Fomitopsis pinicola (Polyporales), in Polish forests
Cited by: 2
Author(s): Anna K. Gdula, Piotr Skubała, Bogna Zawieja, Dariusz J. Gwiazdowicz
Software Mentions: 1
Published: about 5 years ago

10.1038/s12276-020-0459-0

Exercise training modulates the gut microbiota profile and impairs inflammatory signaling pathways in obese children
Cited by: 89
Author(s): Rocío Quiroga, Esther Nistal, Brisamar Estébanez, David Gimeno Ruiz de Porras, María Juárez‐Fernández, Susana Martínez‐Flórez, María Victoria García‐Mediavilla, José Antonio de Paz, Javier González‐Gallego, Sonia Sánchez-Campos, María J. Cuevas
Software Mentions: 1
Published: about 6 years ago

10.3390/nu11112634

Berry-Enriched Diet in Salt-Sensitive Hypertensive Rats: Metabolic Fate of (Poly)Phenols and the Role of Gut Microbiota
Cited by: 21
Author(s): Andréia Gomes, Carole Oudot, Alba Maciá, Alexandre Foito, Diogo Carregosa, Derek Stewart, Tom Van de Wiele, David Berry, María‐José Motilva, Catherine Brenner, Cláudia N. Santos
Software Mentions: 1
Published: almost 7 years ago

10.1007/s00792-017-0976-5

High altitude, hyper-arid soils of the Central-Andes harbor mega-diverse communities of actinobacteria
Cited by: 35
Author(s): Alan T. Bull, Hamidah Idris, Roy Sanderson, Juan A. Asenjo, Bárbara A. Andrews, Michael Goodfellow
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0078866

The Diversity and Distribution of Fungi on Residential Surfaces
Cited by: 139
Author(s): Rachel I. Adams, Marzia Miletto, John W. Taylor, Thomas D. Bruns
Software Mentions: 1
Published: almost 13 years ago

10.3390/microorganisms7090361

The Structure and Species Co-Occurrence Networks of Soil Denitrifying Bacterial Communities Differ Between A Coniferous and A Broadleaved Forests
Cited by: 13
Author(s): Jie Chen, Jiajia Li, Weijun Shen, Han Xu, Yide Li, Tingwei Luo
Software Mentions: 1
Published: almost 7 years ago

10.3390/nu13041260

Non-Celiac Gluten/Wheat Sensitivity: Clinical Characteristics and Microbiota and Mycobiota Composition by Response to the Gluten Challenge Test
Cited by: 5
Author(s): Valentina Ponzo, Ilario Ferrocino, Ilaria Goitre, Marianna Pellegrini, Mauro Bruno, Marco Astegiano, G Cadario, E Castellana, Fabio Bioletto, Maria Rita Corvaglia, Patrizia Malfa, Luca Simone Cocolin, Ezio Ghigo, Simona Bo
Software Mentions: 1
Published: over 5 years ago

10.1093/femsec/fiab046

Phylogeographic distribution of rhizobia nodulating common bean (Phaseolus vulgaris L.) in Ethiopia
Cited by: 6
Author(s): A.H. Gunnabo, René Geurts, Endalkachew Wolde-meskel, Tulu Degefu, Ken E. Giller, Joost van Heerwaarden
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0128379

Reexamining Sample Size Requirements for Multivariate, Abundance-Based Community Research: When Resources are Limited, the Research Does Not Have to Be
Cited by: 44
Author(s): Frank L. Forcino, Lindsey R. Leighton, Pamela Twerdy, James Cahill
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0161871

Activity Patterns of St. Louis Encephalitis and West Nile Viruses in Free Ranging Birds during a Human Encephalitis Outbreak in Argentina
Cited by: 17
Author(s): Luis Adrián Díaz, Agustín Quaglia, Brenda Konigheim, Analia Silvana Boris, Javier Aguilar, Nicholas Komar, Marta Silvia Contigiani
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0193822

Simulated tri-trophic networks reveal complex relationships between species diversity and interaction diversity
Cited by: 9
Author(s): Nicholas A. Pardikes, Will Lumpkin, Paul J. Hurtado, Lee A. Dyer
Software Mentions: 1
Published: over 8 years ago

10.3390/nu12072041

Targeting the Intestinal Microbiota to Prevent Type 2 Diabetes and Enhance the Effect of Metformin on Glycaemia: A Randomised Controlled Pilot Study
Cited by: 56
Author(s): Talia Palacios, Luis Vitetta, Samantha Coulson, Claire Madigan, Yan Y. Lam, Rachel Manuel, David Briskey, Chelsea Hendy, Ji-Nu Kim, Thomas Ishoey, Maria J. Soto-Girón, Eric M. Schott, Gerardo Toledo, Ian D. Caterson
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0033373

Wildfires in Bamboo-Dominated Amazonian Forest: Impacts on Above-Ground Biomass and Biodiversity
Cited by: 37
Author(s): Jos Barlow, Juliana M. Silveira, Luiz Augusto Macedo Mestre, Rafael Andrade, Gabriela Camacho D'Andrea, Júlio Louzada, Fernando Z. Vaz‐de‐Mello, Izaya Numata, Sébastien Lacau, Mark A. Cochrane
Software Mentions: 1
Published: over 14 years ago

10.1093/femsec/fiv010

High diversity of protistan plankton communities in remote high mountain lakes in the European Alps and the Himalayan mountains
Cited by: 52
Author(s): Barbara Kammerlander, Hans‐Werner Breiner, Sabine Filker, Rubén Sommaruga, Bettina Sonntag, Thorsten Stoeck
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0208230

Microbial community composition and diversity in the Indian Ocean deep sea REY-rich muds
Cited by: 11
Author(s): Shuyan Wang, Miao Yu, Jiaqiang Wei, Mu Huang, Xuefa Shi, Hao Chen
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-019-0749-8

Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons
Cited by: 251
Author(s): Weidong Chen, Kexin Ren, Alain Isabwe, Huihuang Chen, Min Liu, Jun Yang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0151622

Decreasing Nitrogen Fertilizer Input Had Little Effect on Microbial Communities in Three Types of Soils
Cited by: 11
Author(s): Hailing Yu, Qiang Gao, Zeqiang Shao, Anning Ying, Yuyang Sun, Jingwei Liu, Wei Mao, Bin Zhang
Software Mentions: 1
Published: over 10 years ago

Projects: cran: vegan

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Papers Mentioning vegan 6,903