Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: vegan

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/vegan

Community Ecology Package
87 versions
Latest release: about 2 years ago
202 dependent packages
91,351 downloads last month

Papers Mentioning vegan 6,903

10.1038/srep38709
Regional variations in the diversity and predicted metabolic potential of benthic prokaryotes in coastal northern Zhejiang, East China Sea
Cited by: 33
Author(s): Kai Wang, Xiansen Ye, Huajun Zhang, Heping Chen, Demin Zhang, Lian Liu
Software Mentions: 2
Published: almost 8 years ago
10.1038/srep38893
The biogeography of soil archaeal communities on the eastern Tibetan Plateau
Cited by: 41
Author(s): Yu Shi, Jonathan M. Adams, Yingying Ni, Teng Yang, Xin Jing, Litong Chen, Jin‐Sheng He, Haiyan Chu
Software Mentions: 2
Published: almost 8 years ago
10.1038/srep40189
Diel-scale temporal dynamics recorded for bacterial groups in Namib Desert soil
Cited by: 34
Author(s): Eoin Gunnigle, Aline Frossard, Jean‐Baptiste Ramond, Leandro D. Guerrero, Mary Seely, Don A. Cowan
Software Mentions: 2
Published: almost 8 years ago
10.1038/srep40519
Population expansions dominate demographic histories of endemic and widespread Pacific reef fishes
Cited by: 32
Author(s): Erwan Delrieu‐Trottin, Stefano Mona, Jeffrey Maynard, Valentina Neglia, Michel Veuille, Serge Planes
Software Mentions: 2
Published: almost 8 years ago
10.1038/srep40864
Microbial succession in the gastrointestinal tract of dairy cows from 2 weeks to first lactation
Cited by: 124
Author(s): Kimberly A. Dill‐McFarland, Jacob D. Breaker, Garret Suen
Software Mentions: 2
Published: almost 8 years ago
10.1038/srep43032
A Phylogenetic Perspective on Biogeographical Divergence of the Flora in Yunnan, Southwestern China
Cited by: 11
Author(s): Shuiyin Liu, Huan Zhu, Jie Yang
Software Mentions: 2
Published: almost 8 years ago
10.1038/srep43150
Response of rhizosphere soil microbial to Deyeuxia angustifolia encroaching in two different vegetation communities in alpine tundra
Cited by: 14
Author(s): Li Lin, Xing Ming, Jingling Lv, Xiaolong Wang, Xia Chen
Software Mentions: 2
Published: almost 8 years ago
10.1038/srep45134
The influence of environmental factors on communities of arbuscular mycorrhizal fungi associated with Chenopodium ambrosioides revealed by MiSeq sequencing investigation
Cited by: 64
Author(s): Xihui Xu, Chen Chen, Zhou Zhang, Zehua Sun, Yahua Chen, Jiandong Jiang, Zhenguo Shen
Software Mentions: 2
Published: over 7 years ago
10.1038/srep45220
A distinct bacterial dysbiosis associated skin inflammation in ovine footrot
Cited by: 23
Author(s): Grazieli Maboni, Adam Blanchard, Sara Frosth, Ceri E. Stewart, Richard D. Emes, Sabine Tötemeyer
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-018-27168-9
Environmental legacy contributes to the resilience of methane consumption in a laboratory microcosm system
Cited by: 10
Author(s): Sascha Krause, Marion Meima-Franke, Annelies J. Veraart, Guohao Ren, Adrian Ho, Paul L. E. Bodelier
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-27017-9
Using co-occurrence information and trait composition to understand individual plant performance in grassland communities
Cited by: 13
Author(s): Edward B. Breitschwerdt, Ute Jandt, Helge Bruelheide
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-28091-9
Differential preservation of endogenous human and microbial DNA in dental calculus and dentin
Cited by: 86
Author(s): Allison E. Mann, Susanna Sabin, Kirsten A. Ziesemer, Åshild J. Vågene‬, Hannes Schroeder, Andrew T. Ozga, Krithivasan Sankaranarayanan, Courtney A. Hofman, James A. Fellows Yates, Domingo C. Salazar‐García, Bruno Fröhlich, Mark Aldenderfer, Menno L. P. Hoogland, Christopher Read, George R. Milner, Anne C. Stone, Cecil M. Lewis, Johannes Krause, Corinne L. Hofman, Kirsten I. Bos, Christina Warinner
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-28150-1
Litter quality drives the differentiation of microbial communities in the litter horizon across an alpine treeline ecotone in the eastern Tibetan Plateau
Cited by: 19
Author(s): Haifeng Zheng, Yamei Chen, Yang Liu, Jian Zhang, Weiru Yang, Yang Lin, Hongjie Li, Lifeng Wang, Fuzhong Wu, Li Guo
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-29039-9
Contrasting biogeography and diversity patterns between diatoms and haptophytes in the central Pacific Ocean
Cited by: 45
Author(s): Hisashi Endo, Hiroyuki Ogata, Koji Suzuki
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-29346-1
Vineyard under-vine floor management alters soil microbial composition, while the fruit microbiome shows no corresponding shifts
Cited by: 50
Author(s): Ming-Yi Chou, Justine E. Vanden Heuvel, Terrence H. Bell, Kevin Panke-Buisse, Jenny Kao‐Kniffin
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-29521-4
Comparative mangrove metagenome reveals global prevalence of heavy metals and antibiotic resistome across different ecosystems
Cited by: 65
Author(s): Madangchanok Imchen, Ranjith Kumavath, Debmalya Barh, Aline B. M. Vaz, Aristóteles Goés-Neto, Sandeep Tiwari, Preetam Ghosh, Alice R. Wattam, Vasco Azevedo
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-29251-7
Ocean acidification drives community shifts towards simplified non-calcified habitats in a subtropical−temperate transition zone
Cited by: 79
Author(s): Sylvain Agostini, Ben P. Harvey, Shigeki Wada, Koetsu Kon, Marco Milazzo, Kazuo Inaba, Jason M. Hall-Spencer
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-29953-y
Microbiomes of gall-inducing copepod crustaceans from the corals Stylophora pistillata (Scleractinia) and Gorgonia ventalina (Alcyonacea)
Cited by: 10
Author(s): Pavel V. Shelyakin, Sofya K. Garushyants, М. А. Никитин, Sofya V. Mudrova, Michael L. Berumen, A.G.C.L. Speksnijder, Bert W. Hoeksema, Diego Fontaneto, Mikhail S. Gelfand, Viatcheslav N. Ivanenko
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-30901-z
Comparison of microbiomes of cold-water corals Primnoa pacifica and Primnoa resedaeformis, with possible link between microbiome composition and host genotype
Cited by: 16
Author(s): Dawn B. Goldsmith, Christina A. Kellogg, Cheryl L. Morrison, Michael A. Gray, Robert P. Stone, Rhian G. Waller, Sandra Brooke, Steve W. Ross
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-30428-3
Gut microbiota composition and butyrate production in children affected by non-IgE-mediated cow’s milk allergy
Cited by: 71
Author(s): Roberto Berni Canani, Francesca De Filippis, Rita Nocerino, Lorella Paparo, Carmen Di Scala, Linda Cosenza, Giusy Della Gatta, Antonio Calignano, Carmen De, Manolo Laiola, Jack A. Gilbert
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-30689-y
A detailed investigation of the porcine skin and nose microbiome using universal and Staphylococcus specific primers
Cited by: 36
Author(s): Mikael Lenz Strube, Julie Elvekjær Hansen, Sophia Rasmussen, Karl Pedersen
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-31382-w
The phylogenetic relationships and species richness of host-specific Dactylogyrus parasites shaped by the biogeography of Balkan cyprinids
Cited by: 25
Author(s): Michal Benovics, Yves Desdevises, Jasna Vukić, Radek Šanda, Andrea Vetešníková Šimková
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-018-31706-w
Bacterial communities and potential waterborne pathogens within the typical urban surface waters
Cited by: 47
Author(s): Decai Jin, Xiao Kong, Bingjian Cui, Shulan Jin, Yonghong Xie, Xingrun Wang, Ye Deng
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-018-31731-9
Habitat environments impacted the gut microbiome of long-distance migratory swan geese but central species conserved
Cited by: 51
Author(s): Yueni Wu, Yefeng Yang, Lei Cao, Huaqun Yin, Meiying Xu, Zhujun Wang, Yangying Liu, Xin Wang, Ye Deng
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-018-31738-2
The gastric mucosal-associated microbiome in patients with gastric polyposis
Cited by: 13
Author(s): Rongrong Ren, Zikai Wang, Huaibo Sun, Xuefeng Gao, Gang Sun, Lihua Peng, Bin Yan, Yunsheng Yang
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-018-34106-2
Bacterial and archaeal community structures in perennial cave ice
Cited by: 27
Author(s): Corina Ițcuș, Madalina D. Pascu, Paris Lavín, Aurel Perşoiu, Lavinia Iancu, Cristina Purcarea
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-018-34896-5
Functional recovery of a subtropical evergreen-deciduous broadleaved mixed forest following clear cutting in central China
Cited by: 8
Author(s): Yongtao Huang, Xiao Zhang, Runguo Zang, Shenglei Fu, Xunru Ai, Lan Yao, Yi Ding, Jihong Huang, Xinghui Lu
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-018-35057-4
Combining fish and benthic communities into multiple regimes reveals complex reef dynamics
Cited by: 30
Author(s): Mary K. Donovan, Alan M. Friedlander, Joey Lecky, Jean-Baptiste Jouffray, Gareth J. Williams, Lisa M. Wedding, Larry B. Crowder, A. S. Erickson, Nicholas A. J. Graham, Jamison M. Gove, Carrie V. Kappel, Kendra Karr, John N. Kittinger, Albert V. Norström, Magnus Nyström, Kirsten L.L. Oleson, Kostantinos A. Stamoulis, Crow White, Ivor D. Williams, Kimberly A. Selkoe
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-018-35410-7
Partitioning beta diversity in a tropical karst seasonal rainforest in Southern China
Cited by: 18
Author(s): Yili Guo, Wenhua Xiang, Bin Wang, Dongxing Li, Azim U. Mallik, Han Y. H. Chen, Fuzhao Huang, Tao Ding, Shujun Wen, Sihua Lü, Xiankun Li
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-018-36971-3
Plant-microbe interactions before drought influence plant physiological responses to subsequent severe drought
Cited by: 36
Author(s): Danielle Ulrich, Sanna Sevanto, Max Ryan, Michaeline B. N. Albright, Renee Johansen, John Dunbar
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-018-37298-9
Close social relationships correlate with human gut microbiota composition
Cited by: 123
Author(s): Kimberly A. Dill‐McFarland, Zheng-Zheng Tang, Julia H. Kemis, Robert L. Kerby, Guanhua Chen, Alberto Palloni, Thomas J. Sorenson, Federico E. Rey, Pamela Herd
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-018-37565-9
Environmental filtering of bacterial functional diversity along an aridity gradient
Cited by: 14
Author(s): Huacan Song, Yu Shi, Teng Yang, Haiyan Chu, Jin‐Sheng He, Hyoki Kim, Piotr G. Jabłoński, Jonathan M. Adams
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-018-37851-6
Risk of biodiversity collapse under climate change in the Afro-Arabian region
Cited by: 24
Author(s): Alaa Eldin Soultan, Martin Wikelski, Kamran Safi
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-018-37062-z
Interactions within the microbiome alter microbial interactions with host chemical defences and affect disease in a marine holobiont
Cited by: 52
Author(s): Sharon R. Longford, Alexandra H. Campbell, Shaun Nielsen, Rebecca J. Case, Staffan Kjelleberg, Peter D. Steinberg
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-018-38344-2
Leaf-associated microbiomes of grafted tomato plants
Cited by: 41
Author(s): Hirokazu Toju, Koji Okayasu, Michitaka Notaguchi
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-019-39603-6
Effects of naphthalene on soil fauna abundance and enzyme activity in the subalpine forest of western Sichuan, China
Cited by: 9
Author(s): Yuwei Liu, Fan Yang, Wanqin Yang, Fuzhong Wu, Zhenfeng Xu, Yang Liu, Li Zhang, Kai Yue, Xiangyin Ni, Liying Lan, Ya Chen
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-019-39399-5
Optimizing environmental DNA sampling effort for fish inventories in tropical streams and rivers
Cited by: 77
Author(s): Isabel Cantera, Kévin Cilleros, Alice Valentini, Axel Cerdan, Tony Déjean, Amaia Iribar, Pierre Taberlet, Régis Vigouroux, Sébastien Brosse
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-40150-3
Resilience of Central Pacific reefs subject to frequent heat stress and human disturbance
Cited by: 19
Author(s): Simon D. Donner, Jessica Carilli
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-40347-6
Intensity of Nosema ceranae infection is associated with specific honey bee gut bacteria and weakly associated with gut microbiome structure
Cited by: 62
Author(s): Andrey Rubanov, Kaleigh A. Russell, Jason A. Rothman, James C. Nieh, Quinn S. McFrederick
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-41195-0
Diabetic cats have decreased gut microbial diversity and a lack of butyrate producing bacteria
Cited by: 37
Author(s): Ida Nordang Kieler, Melania Osto, Leoni Hugentobler, Lara Puetz, M. Thomas P. Gilbert, Torben Hansen, Oluf Pedersen, Claudia E Reusch, Eric Zini, Thomas Lutz, Charlotte Reinhard Bjørnvad
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-41738-5
The potential probiotic Lactobacillus rhamnosus CNCM I-3690 strain protects the intestinal barrier by stimulating both mucus production and cytoprotective response
Cited by: 86
Author(s): Rebeca Martín, Célia Chamignon, Nadia Mhedbi-Hajri, Florian Chain, Muriel Derrien, Unai Escribano-Vázquez, Peggy Garault, Aurélie Cotillard, Hang-Phuong Pham, Christian Chervaux, Luis G. Bermúdez‐Humarán, Tamara Smokvina, Philippe Langella
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-42222-w
Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transplantation
Cited by: 16
Author(s): Federica D’Amico, Matteo Soverini, Daniele Zama, Clarissa Consolandi, Marco Severgnini, Arcangelo Prete, Andrea Pession, Monica Barone, Silvia Turroni, Elena Biagi, Patrizia Brigidi, Riccardo Masetti, Simone Rampelli, Marco Candela
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-42455-9
Comprehensive biodiversity analysis via ultra-deep patterned flow cell technology: a case study of eDNA metabarcoding seawater
Cited by: 68
Author(s): Gregory A. C. Singer, Nicole A Fahner, Joshua G Barnes, Avery McCarthy, Mehrdad Hajibabaei
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-42609-9
Microbial Community Dynamics During Lake Ice Freezing
Cited by: 24
Author(s): Timothy Butler, Anna-Catharina Wilhelm, Amber C. Dwyer, Paige N Webb, Andrew L. Baldwin, Stephen M. Techtmann
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-57378-8
Genetic insights into the social organisation of the Avar period elite in the 7th century AD Carpathian Basin
Cited by: 21
Author(s): Veronika Csáky, Dániel Gerber, István Koncz, Gergely Csiky, Balázs Gusztáv Mende, Bea Szeifert, Balázs Egyed, Horolma Pamjav, Antónia Marcsik, Erika Molnár, György Paragh, András Gulyás, Bernadett Kovacsóczy, Gabriella M. Lezsák, Gábor Lőrinczy, Anna Szécsényi-Nagy, Tivadar Vida
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-58631-1
Drivers of benthic metacommunity structure along tropical estuaries
Cited by: 22
Author(s): Andréia Teixeira Alves, Danielle Katharine Petsch, Francisco Barros
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-59207-9
Relationships Between Environmental Conditions And Fish Assemblages In Tropical Savanna Headwater Streams
Cited by: 11
Author(s): Thiago Bernardi Vieira, Francisco Leonardo Tejerina‐Garro
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-60024-3
Bioactive carbon improves nitrogen fertiliser efficiency and ecological sustainability
Cited by: 8
Author(s): P. R. Espie, Haley Ridgway
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-60449-w
Characterization of intratissue bacterial communities and isolation of Escherichia coli from oral lichen planus lesions
Cited by: 16
Author(s): Keumjin Baek, Jaewon Lee, Ahreum Lee, Jun-Ho Lee, Hye‐Jung Yoon, Hee Kyung Park, Jongsik Chun, Youngnim Choi
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-60591-5
Insect pollination: an ecological process involved in the assembly of the seed microbiota
Cited by: 27
Author(s): Alberto Prado, Brice Marolleau, Bernard Vaissière, Matthieu Barret, Gloria Torres-Cortés
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-60052-z
Enrichment and characterisation of ethanol chain elongating communities from natural and engineered environments
Cited by: 24
Author(s): Pieter Candry, Shengle Huang, José M. Carvajal-Arroyo, Korneel Rabaey, Ramón Ganigué
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-60862-1
Difference in post-stress recovery of the gut microbiome and its altered metabolism after chronic adolescent stress in rats
Cited by: 19
Author(s): Mengyang Xu, Chen Wang, Kristen N. Krolick, Haifei Shi, Jiangjiang Zhu
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-62919-7
Soil bacterial diversity correlates with precipitation and soil pH in long-term maize cropping systems
Cited by: 22
Author(s): Wenjun Tan, Junman Wang, Wenqing Bai, Jiejun Qi, Weimin Chen
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-63091-8
Reduced microbial diversity induces larger volatile organic compound emissions from soils
Cited by: 35
Author(s): Letizia Abis, Benjamin Loubet, Raluca Ciuraru, Florence Lafouge, Sabine Houot, Virginie Nowak, Julie Tripied, Samuel Dequiedt, Pierre Alain Maron, Sophie Sadet-Bourgeteau
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-63218-x
Larval Geoduck (Panopea generosa) Proteomic Response to Ciliates
Cited by: 5
Author(s): Emma Timmins‐Schiffman, José Ignacio Navarro Guzmán, Rhonda Elliott Thompson, Brent Vadopalas, Benoït Eudeline, Steven B. Roberts
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-63003-w
Nest boxes do not cause a shift in bat community composition in an urbanised landscape
Cited by: 12
Author(s): Stephen R. Griffiths, Linda F. Lumsden, Kylie A. Robert, Pia E. Lentini
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-63543-1
Bacterial community analysis of floor dust and HEPA filters in air purifiers used in office rooms in ILAS, Beijing
Cited by: 21
Author(s): Jianguo Guo, Yi Xiong, Taisheng Kang, Zhiguang Xiang, Chuan Qin
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-63475-w
Gut metagenomic and short chain fatty acids signature in hypertension: a cross-sectional study
Cited by: 101
Author(s): Lorena Calderón-Pérez, María José Gosalbes, Sílvia Yuste, Rosa M. Valls, Anna Pedret, Elisabet Llauradó, Nuria Jiménez‐Hernández, Alejandro Artacho, Laura Pla‐Pagà, Judit Companys, Iziar A. Ludwig, Marı́a-Paz Romero, Laura Rubió, Rosa Solá
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-63214-1
Microbial modulation of host body composition and plasma metabolic profile
Cited by: 13
Author(s): Md. Nazmul Huda, Jason H. Winnike, Jocelyn M. Crowell, Annalouise O’Connor, Brian J. Bennett
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-65253-0
Microbiota in vitro modulated with polyphenols shows decreased colonization resistance against Clostridioides difficile but can neutralize cytotoxicity
Cited by: 11
Author(s): Aleksander Mahnič, Jennifer M. Auchtung, Nataša Poklar Ulrih, Robert A. Britton, Maja Rupnik
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-65459-2
Urban aliens and threatened near-naturals: Land-cover affects the species richness of alien- and threatened species in an urban-rural setting
Cited by: 3
Author(s): Tanja K. Petersen, James D. M. Speed, Vidar Grøtan, Gunnar Austrheim
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-65740-4
Host genotype and exercise exhibit species-level selection for members of the gut bacterial communities in the mouse digestive system
Cited by: 11
Author(s): Robert A. Dowden, Lora R. McGuinness, Paul Wisniewski, Sara C. Campbell, John J. Guers, Marko Oydanich, Stephen F. Vatner, Max M. Häggblom, Lee J. Kerkhof
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-66056-z
The microbial biogeography of the gastrointestinal tract of preterm and term lambs
Cited by: 8
Author(s): Clara Yieh Lin Chong, Tommi Vatanen, Mark Oliver, Frank H. Bloomfield, Justin M. O’Sullivan
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-66638-x
Successional trajectory of bacterial communities in soil are shaped by plant-driven changes during secondary succession
Cited by: 24
Author(s): M. Rama Krishna, Shruti Gupta, Manuel Delgado‐Baquerizo, Elly Morriën, Satish Chandra Garkoti, Rupesh Chaturvedi, Shandar Ahmad
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-67658-3
Data-derived metrics describing the behaviour of field-based citizen scientists provide insights for project design and modelling bias
Cited by: 28
Author(s): Tom August, Richard Fox, David B. Roy, Michael J. O. Pocock
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-68386-4
Seasonal and environmental variation in volatile emissions of the New Zealand native plant Leptospermum scoparium in weed-invaded and non-invaded sites
Cited by: 10
Author(s): Evans Effah, D. Paul Barrett, Paul G. Peterson, Murray A. Potter, Jarmo K. Holopainen, Andrea Clavijo McCormick
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-68618-7
Are endemic species necessarily ecological specialists? Functional variability and niche differentiation of two threatened Dianthus species in the montane steppes of northeastern Iran
Cited by: 14
Author(s): Maryam Behroozian, Hamid Ejtehadi, Farshid Memariani, Simon Pierce, M Mesdaghi
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-69845-8
The alteration of gut microbiome and metabolism in amyotrophic lateral sclerosis patients
Cited by: 58
Author(s): Qianqian Zeng, Jie Shen, Kangzhi Chen, Jinxia Zhou, Qiao Liao, Ke Lü, Jiao Yuan, Fangfang Bi
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-70307-4
Monitoring of biofouling communities in a Portuguese port using a combined morphological and metabarcoding approach
Cited by: 19
Author(s): Joana Azevedo, Jorge T. Antunes, André M. Machado, Vítor Vasconcelos, Pedro N. Leão, Elsa Froufe
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-69858-3
Human practices promote presence and abundance of disease-transmitting mosquito species
Cited by: 14
Author(s): Maarten Schrama, Ellard R. Hunting, Brianna R. Beechler, Milehna M. Guarido, Danny Govender, Wiebe Nijland, M. van ‘t Zelfde, Marietjie Venter, Peter M. van Bodegom, Erin E. Gorsich
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-71501-0
Warfare-induced mammal population declines in Southwestern Africa are mediated by species life history, habitat type and hunter preferences
Cited by: 22
Author(s): Franciany Braga‐Pereira, Carlos A. Peres, João Vitor Campos‐Silva, Carmen Van-Dúnem Neto Santos, Rômulo Romeu Nóbrega Alves
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-72286-y
Contrasting microbiota profiles observed in children carrying either Blastocystis spp. or the commensal amoebas Entamoeba coli or Endolimax nana
Cited by: 18
Author(s): Juan F. Alzate, Miguel Toro-Londoño, Felipe Cabarcas, Gisela María García-Montoya, Ana Luz Galván-Díaz
Software Mentions: 2
Published: about 4 years ago
10.3389/fpls.2017.01357
Spatiotemporal Variation and Networks in the Mycobiome of the Wheat Canopy
Cited by: 38
Author(s): Rumakanta Sapkota, Lise Nistrup Jørgensen, Mogens Nicolaisen
Software Mentions: 2
Published: over 7 years ago
10.3389/fpls.2021.643143
Plant Size Plays an Important Role in Plant Responses to Low Water Availability and Defoliation in Two Woody Leguminosae Species
Cited by: 5
Author(s): Ning Wang, Qiang Li, Xiao Liu, Shijie Yi, Mingming Zhao, Xinke Sun, Huijia Song, Xiqiang Peng, Peixian Fan, Quan Gao, Yongtao Wang, Linqian Yu, Hui Wang, Ning Du, Renqing Wang
Software Mentions: 2
Published: over 3 years ago
10.3389/fpls.2021.647347
Humans Share More Preferences for Floral Phenotypes With Pollinators Than With Pests
Cited by: 2
Author(s): Victoria Ruiz-Hernández, Lize Joubert, Amador Rodríguez-Gómez, Silvia Artuso, Jonathan G. Pattrick, Perla A. Gómez, Sarah Eckerstorfer, Sarah Sophie Brandauer, Carolina G. I. Trcka-Rojas, Luis Martínez-Reina, Josh Booth, Alex Lau‐Zhu, Julia Weiß, Pablo Bielza, Beverley J. Glover, Robert R. Junker, Marcos Egea‐Cortines
Software Mentions: 2
Published: over 3 years ago
10.7717/peerj.3594
The effect of captivity on the skin microbial symbionts in three Atelopus species from the lowlands of Colombia and Ecuador
Cited by: 14
Author(s): Sandra V. Flechas, Ailín Blasco-Zúñiga, Andrés Merino‐Viteri, Valeria Ramírez‐Castañeda, Miryan Rivera, Adolfo Amézquita
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-019-54869-6
Host phylogeny, diet, and habitat differentiate the gut microbiomes of Darwin’s finches on Santa Cruz Island
Cited by: 33
Author(s): Wesley T. Loo, Jefferson García-Loor, Rachael Y. Dudaniec, Sonia Kleindorfer, Colleen M. Cavanaugh
Software Mentions: 2
Published: almost 5 years ago
10.1128/mSphere.00143-19
Component Microenvironments and System Biogeography Structure Microorganism Distributions in Recirculating Aquaculture and Aquaponic Systems
Cited by: 35
Author(s): Ryan P. Bartelme, Matthew C. Smith, Osvaldo J. Sepulveda‐Villet, Ryan J. Newton
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-57228-7
Biodegradability of woody film produced by solvent volatilisation of Japanese Beech solution
Cited by: 2
Author(s): Т. В. Волкова, Sui Kanazawa, Norihisa Matsuura, Ryoko Yamamoto-Ikemoto
Software Mentions: 2
Published: almost 5 years ago
10.1128/mSphere.00163-19
The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data
Cited by: 80
Author(s): Marc A. Sze, Patrick D. Schloss
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-43025-9
Fungal Elevational Rapoport pattern from a High Mountain in Japan
Cited by: 29
Author(s): Matthew Chidozie Ogwu, Koichi Takahashi, Ke Dong, Huacan Song, Itumeleng Moroenyane, Bruce Waldman, Jonathan M. Adams
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0127781
Geographic Variation in Plant Community Structure of Salt Marshes: Species, Functional and Phylogenetic Perspectives
Cited by: 7
Author(s): Hongyu Guo, Scott Chamberlain, Eran Elhaik, Inder Jalli, Alana-Rose Lynes, Laurie B. Marczak, Niv Sabath, Amy Vargas, Kazimierz Więski, Emily M. Zelig, Steven C. Pennings
Software Mentions: 2
Published: over 9 years ago
10.1128/mSphere.00043-19
Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria
Cited by: 13
Author(s): Holly M. Bik, Alexandra Alexiev, Sabreen K. Aulakh, Lakshmi Bharadwaj, Jennifer C. Flanagan, John M. Haggerty, Sarah M. Hird, Guillaume Jospin, Jenna M. Lang, Laura A. Sauder, Josh D. Neufeld, Shaver Andrew, Akshay Sethi, Jonathan A. Eisen, David A. Coil
Software Mentions: 2
Published: almost 6 years ago
10.1128/mSphereDirect.00698-18
The Gut Microbiota Is Associated with Clearance of Clostridium difficile Infection Independent of Adaptive Immunity
Cited by: 26
Author(s): Jhansi L. Leslie, Kimberly C. Vendrov, Matthew L. Jenior, Vincent B. Young
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-019-55859-4
Time-course relationship between environmental factors and microbial diversity in tobacco soil
Cited by: 22
Author(s): Zhaobao Wang, Yan Yang, Yuzhen Xia, Tao Wu, Jie Zhu, Jianming Yang, Zhengfeng Li
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-019-55843-y
Simultaneous detection and comprehensive analysis of HPV and microbiome status of a cervical liquid-based cytology sample using Nanopore MinION sequencing
Cited by: 18
Author(s): Lili Quan, Ruyi Dong, Wenjuan Yang, Lanyou Chen, Jidong Lang, Jia Liu, Yu Song, Shuiqing Ma, Jialiang Yang, Weiwei Wang, Bo Meng, Geng Tian
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-019-44290-4
Spatial distribution of freshwater crustaceans in Antarctic and Subantarctic lakes
Cited by: 11
Author(s): A Mendoza Diaz, Claudia S. Maturana, Luz Boyero, Patricio De los Ríos Escalante, Alan M. Tonin, Francisco Correa‐Araneda
Software Mentions: 2
Published: over 5 years ago
10.1128/mSphere.00585-18
Gut Virome Analysis of Cameroonians Reveals High Diversity of Enteric Viruses, Including Potential Interspecies Transmitted Viruses
Cited by: 51
Author(s): Claude Kwe Yinda, Emiel Vanhulle, Nádia Conceição-Neto, Leen Beller, Ward Deboutte, Chengying Shi, Stephen Mbigha Ghogomu, Piet Maes, Marc Van Ranst, Jelle Matthijnssens
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-019-44567-8
Differing responses in milk composition from introducing rapeseed and naked oats to conventional and organic dairy diets
Cited by: 12
Author(s): Gillian Butler, Sokratis Stergiadis, Eleni Chatzidimitriou, Enrica Franceschin, Hannah Davis, Carlo Leifert, Håvard Steinshamn
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0158897
GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis
Cited by: 9
Author(s): M. Brittnacher, Sonya L. Heltshe, Hillary S. Hayden, Matthew C. Radey, Eli Weiss, Christopher J. Damman, Timothy L. Zisman, David L. Suskind, Samuel I. Miller
Software Mentions: 2
Published: over 8 years ago
10.1128/mSphere.00418-17
Effect of Environmental Factors and an Emerging Parasitic Disease on Gut Microbiome of Wild Salmonid Fish
Cited by: 48
Author(s): Anti Vasemägi, Marko Visse, Veljo Kisand
Software Mentions: 2
Published: almost 7 years ago
10.1128/mSphere.00366-17
Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon
Cited by: 8
Author(s): Bruno S. de O. Silva, Felipe H. Coutinho, Gustavo Bueno Gregoracci, Luciana Leomil, Louisi Souza de Oliveira, Adriana M. Fróes, Diogo A. Tschoeke, Ana Carolina Soares, Anderson de Souza Cabral, Nicholas D. Ward, Jeffrey E. Richey, Alex V. Krusche, Patricia L. Yager, Carlos Eduardo de Rezende, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-019-45813-9
Latitudinal and bathymetrical species richness patterns in the NW Pacific and adjacent Arctic Ocean
Cited by: 23
Author(s): Hanieh Saeedi, Mark J. Costello, Dan L. Warren, Angelika Brandt
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-46015-z
Characterization of bacterial communities in wastewater with enhanced taxonomic resolution by full-length 16S rRNA sequencing
Cited by: 122
Author(s): Daniela Numberger, Lars Ganzert, Luca Zoccarato, Kristin Mühldorfer, Sascha Sauer, Hans‐Peter Grossart, Alex D. Greenwood
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-46047-5
Anthropogenic pollutant-driven geographical distribution of mesozooplankton communities in estuarine areas of the Bohai Sea, China
Cited by: 16
Author(s): Yangchun Gao, Qing Yang, Hongjun Li, Xiaocheng Wang, Aibin Zhan
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.386
Quantifying cryptic<i>Symbiodinium</i>diversity within<i>Orbicella faveolata</i>and<i>Orbicella franksi</i>at the Flower Garden Banks, Gulf of Mexico
Cited by: 53
Author(s): Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Mónica Medina
Software Mentions: 2
Published: over 10 years ago
10.1002/ece3.4547
Genetic and chemical divergence among host races of a socially parasitic ant
Cited by: 6
Author(s): Candice W. Torres, Maria A. Tonione, Santiago R. Ramírez, Joseph Sapp, Neil D. Tsutsui
Software Mentions: 2
Published: about 6 years ago
10.7717/peerj.862
Effect of different heterotrophic plate count methods on the estimation of the composition of the culturable microbial community
Cited by: 24
Author(s): Eva Theres Gensberger, Eva-Maria Gössl, Livio Antonielli, Angela Sessitsch, Tanja Kostić
Software Mentions: 2
Published: over 9 years ago
10.1002/ece3.6710
Miocene diversification of a golden‐thread nanmu tree species (<i>Phoebe zhennan</i>, Lauraceae) around the Sichuan Basin shaped by the East Asian monsoon
Cited by: 17
Author(s): Jianhua Xiao, Ding Xin, Lang Li, Hui Ma, Xiuqin Ci, Marlien van der Merwe, John G. Conran, Jie Li
Software Mentions: 2
Published: over 4 years ago
10.1002/ece3.6538
Climate and vegetation structure shape ant communities along elevational gradients on the Colorado Plateau
Cited by: 12
Author(s): Derek A. Uhey, Richard W. Hofstetter, Michael Remke, Sneha Vissa, Karen A. Haubensak
Software Mentions: 2
Published: over 4 years ago