cran: vegan | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-81257-w

Analysis of global human gut metagenomes shows that metabolic resilience potential for short-chain fatty acid production is strongly influenced by lifestyle
Cited by: 10
Author(s): David P. Jacobson, Tanvi P. Honap, Andrew T. Ozga, Nicolas Méda, Thérèse Kagoné, Hélène Carabin, Paul Spicer, Raúl Y. Tito, Alexandra J. Obregón-Tito, Luis Marín Reyes, Luzmila Troncoso-Corzo, Emilio Guija-Poma, Krithivasan Sankaranarayanan, Cecil M. Lewis
Software Mentions: 2
Published: over 5 years ago

10.1111/mec.14696

Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels
Cited by: 33
Author(s): Mia M. Bengtsson, Karoline Wagner, Clarissa Schwab, Tim Urich, Tom J. Battin
Software Mentions: 2
Published: over 8 years ago

10.1186/s12870-021-03047-w

Insights into the mechanism of the effects of rhizosphere microorganisms on the quality of authentic Angelica sinensis under different soil microenvironments
Cited by: 10
Author(s): Lei Zhu, Hui Yan, Guisheng Zhou, Chunhao Jiang, Pei Liu, Guang Yu, Sheng Guo, Qinan Wu, Jin‐Ao Duan
Software Mentions: 2
Published: about 5 years ago

10.1186/s12870-019-1705-2

Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana
Cited by: 24
Author(s): Yasuhiro Sato, Rie Shimizu‐Inatsugi, Misako Yamazaki, Kentaro Shimizu, Atsushi J. Nagano
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2229-10-244

High diversity of root associated fungi in both alpine and arctic Dryas octopetala
Cited by: 106
Author(s): Marit Frederikke Markussen Bjorbækmo, Tor Carlsen, Anne K. Brysting, Trude Vrålstad, Klaus Høiland, Karl I. Ugland, József Geml, Trond Schumacher, Håvard Kauserud
Software Mentions: 2
Published: almost 16 years ago

10.1038/s41598-021-81131-9

Pteropods make thinner shells in the upwelling region of the California Current Ecosystem
Cited by: 24
Author(s): Lisette Mekkes, Willem Renema, Nina Bednaršek, Simone R. Alin, Richard A. Feely, Jef Huisman, Peter Roessingh, Katja T. C. A. Peijnenburg
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-018-1500-5

Structural diversity across arbuscular mycorrhizal, ectomycorrhizal, and endophytic plant–fungus networks
Cited by: 9
Author(s): Hirokazu Toju, Hirotoshi Sato, Satoshi Yamamoto, Akifumi S. Tanabe
Software Mentions: 2
Published: almost 8 years ago

10.1111/mec.15734

Environmental DNA metabarcoding of cow dung reveals taxonomic and functional diversity of invertebrate assemblages
Cited by: 16
Author(s): Eva Egelyng Sigsgaard, Kent Olsen, Morten D. D. Hansen, Ole Ingemann Hansen, Toke T. Høye, Jens‐Christian Svenning, Philip Francis Thomsen
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-81105-x

The relationships between microbiota and the amino acids and organic acids in commercial vegetable pickle fermented in rice-bran beds
Cited by: 8
Author(s): Kazunori Sawada, Hitoshi Koyano, Nozomi Yamamoto, Takuji Yamada
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-020-02535-9

Plant performance of enhancing licorice with dual inoculating dark septate endophytes and Trichoderma viride mediated via effects on root development
Cited by: 18
Author(s): Chunguang He, Wenquan Wang, Jiaxin Hou
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-80362-6

Family graveyards form underappreciated local plant diversity hotspots in China's agricultural landscapes
Cited by: 0
Author(s): Cheng Gong, Liangtao Li, Jan C. Axmarcher, Zhenrong Yu, Yunhui Liu
Software Mentions: 2
Published: over 5 years ago

10.1111/1755-0998.12943

Using metabarcoding to compare the suitability of two blood‐feeding leech species for sampling mammalian diversity in North Borneo
Cited by: 28
Author(s): Rosie Drinkwater, Ida Bærholm Schnell, Kristine Bohmann, Henry Bernard, Géraldine Veron, Elizabeth L. Clare, M. Thomas P. Gilbert, Stephen J. Rossiter
Software Mentions: 2
Published: almost 8 years ago

10.3390/molecules26082330

An In Vitro Pilot Fermentation Study on the Impact of Chlorella pyrenoidosa on Gut Microbiome Composition and Metabolites in Healthy and Coeliac Subjects
Cited by: 4
Author(s): Carmen van der Linde, Monica Barone, Silvia Turroni, Patrizia Brigidi, Enver Keleszade, Jonathan R. Swann, Adele Costabile
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules25143200

Herbivory and Attenuated UV Radiation Affect Volatile Emissions of the Invasive Weed Calluna vulgaris
Cited by: 8
Author(s): Evans Effah, D. Paul Barrett, Paul G. Peterson, Jason J. Wargent, Murray A. Potter, Jarmo K. Holopainen, Andrea Clavijo McCormick
Software Mentions: 2
Published: about 6 years ago

10.1186/s12887-016-0724-5

A comparison of intestinal microbiota in a population of low-risk infants exposed and not exposed to intrapartum antibiotics: The Baby & Microbiota of the Intestine cohort study protocol
Cited by: 22
Author(s): Julia Simioni, Eileen K. Hutton, Elizabeth Gunn, Alison C. Holloway, Jennifer C. Stearns, Helen McDonald, Andrea Mousseau, Jonathan D. Schertzer, Elyanne M. Ratcliffe, Lehana Thabane, Michael G. Surette, Katherine M. Morrison
Software Mentions: 2
Published: almost 10 years ago

10.7717/peerj.3428

Putative archaeal viruses from the mesopelagic ocean
Cited by: 46
Author(s): Dean Vik, Simon Roux, Jennifer R. Brum, Benjamin Bolduc, Joanne B. Emerson, Cory C. Padilla, Frank J. Stewart, Matthew B. Sullivan
Software Mentions: 2
Published: over 9 years ago

10.3390/ani10020259

Targeted-Release Organic Acids and Essential Oils Improve Performance and Digestive Function in Broilers under a Necrotic Enteritis Challenge
Cited by: 34
Author(s): Nedra Abdelli, José Francisco Pérez, E. Vilarrasa, Irene Cabeza Luna, Diego Melo-Durán, Matilde D’Angelo, David Solà-Oriol
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.7152

Microbial community dynamics during aerobic granulation in a sequencing batch reactor (SBR)
Cited by: 5
Author(s): Fabiola Gómez-Basurto, Miguel Vital‐Jácome, Selene Gómez-Acata, Frédéric Thalasso, Marco Luna‐Guido, Luc Dendooven
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.4707

Comparing the catch composition, profitability and discard survival from different trammel net designs targeting common spiny lobster (Palinurus elephas) in a Mediterranean fishery
Cited by: 12
Author(s): Gaetano Catanese, Hilmar Hinz, María del Mar Gil, Miquel Palmer, Michael J. Breen, António Mira, Elena Pastor, Amàlia Grau, Andrea Campos-Candela, Elka Koleva, Antoni Grau, Beatriz Morales‐Nin
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.4060

Evaluating the role of wild songbirds or rodents in spreading avian influenza virus across an agricultural landscape
Cited by: 5
Author(s): Derek D. Houston, Shahan Azeem, Coady W. Lundy, Yuko Sato, Baoqing Guo, Julie A. Blanchong, Phillip C. Gauger, David R. Marks, Kyoung‐Jin Yoon, James S. Adelman
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12903-018-0699-8

Plaque biofilm microbial diversity in infants aged 12 months and their mothers with or without dental caries: a pilot study
Cited by: 7
Author(s): Danying Tao, Fĕi Li, Xiping Feng, Chun Hung Chu, Hai‐Xia Lu
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12903-018-0520-8

Apical periodontitis: preliminary assessment of microbiota by 16S rRNA high throughput amplicon target sequencing
Cited by: 25
Author(s): Federico Mussano, Ilario Ferrocino, Natalija Gavrilova, Tullio Genova, Alessandro Dell’Acqua, Luca Simone Cocolin, Stefano Carossa
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.2538

Deer herbivory reduces web-building spider abundance by simplifying forest vegetation structure
Cited by: 17
Author(s): Elizabeth J Roberson, Michael J. Chips, Walter P. Carson, Thomas P. Rooney
Software Mentions: 2
Published: almost 10 years ago

10.7717/peerj.3088

Urban forests sustain diverse carrion beetle assemblages in the New York City metropolitan area
Cited by: 6
Author(s): Nicole Fusco, Anthony Zhao, Jason Munshi‐South
Software Mentions: 2
Published: over 9 years ago

10.1186/s12866-021-02233-y

Optimisation of sample storage and DNA extraction for human gut microbiota studies
Cited by: 23
Author(s): Jekaterina Kazantseva, Esther Malv, Aleksei Kaleda, Aili Kallastu, Anne Meikas
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.4898

Do latitudinal gradients exist in New Zealand stream invertebrate metacommunities?
Cited by: 8
Author(s): Jonathan D. Tonkin, Russell G. Death, Timo Muotka, Anna Astorga, David A. Lytle
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.9927

Connectivity of bacterial assemblages along the Loa River in the Atacama Desert, Chile
Cited by: 7
Author(s): Ana Zárate, Cristina Dorador, Rubén Araya, Mariela Guajardo, July Z. Florez, Gonzalo Icaza, Diego Cornejo, Jorge Valdés
Software Mentions: 2
Published: almost 6 years ago

10.3390/ani10050882

Understanding Temporal Social Dynamics in Zoo Animal Management: An Elephant Case Study
Cited by: 3
Author(s): Ellen Williams, Samantha Bremner‐Harrison, Carol Hall, Anne Carter
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-82234-z

Water column gradients beneath the summer ice of a High Arctic freshwater lake as indicators of sensitivity to climate change
Cited by: 7
Author(s): Paschale Noël Bégin, Yukiko Tanabe, Milla Rautio, Maxime Wauthy, Isabelle Laurion, Masaki Uchida, Alexander I. Culley, Warwick F. Vincent
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.9257

Bee diversity in secondary forests and coffee plantations in a transition between foothills and highlands in the Guatemalan Pacific Coast
Cited by: 4
Author(s): Gabriela Armas-Quiñonez, Ricardo Ayala, Carlos Avendaño-Mendoza, Roberto Lindig‐Cisneros, Ek del‐Val
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.693

Spatial variation in the littoral vertebrate community of a reservoir relative to physical and biological gradients
Cited by: 0
Author(s): Nathan Ruhl, Jessica J. Soski, Willem M. Roosenburg
Software Mentions: 2
Published: almost 12 years ago

10.7717/peerj.5508

Rhizobacterial communities of five co-occurring desert halophytes
Cited by: 15
Author(s): Yan Li, Yan Kong, Dexiong Teng, Xueni Zhang, Xuemin He, Yang Zhang, Guanghui Lv
Software Mentions: 2
Published: about 8 years ago

10.7717/peerj.11057

DNA metabarcoding of zooplankton communities: species diversity and seasonal variation revealed by 18S rRNA and COI
Cited by: 5
Author(s): Lina Zhao, Xue Zhang, Mingang Xu, Ying Mao, Yuan Huang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82726-y

Comparison between 16S rRNA and shotgun sequencing data for the taxonomic characterization of the gut microbiota
Cited by: 169
Author(s): Francesco Durazzi, Claudia Sala, Gastone Castellani, Gerardo Manfreda, Daniel Remondini, Alessandra De Cesare
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.8735

Contemporary diets of walruses in Bristol Bay, Alaska suggest temporal variability in benthic community structure
Cited by: 6
Author(s): John M. Maniscalco, Alan M. Springer, Katrina L. Counihan, Tuula E. Hollmén, Helen Aderman, Moses Toyukak
Software Mentions: 2
Published: over 6 years ago

10.1186/s12866-020-01817-4

Viral metagenomic analysis of fecal samples reveals an enteric virome signature in irritable bowel syndrome
Cited by: 19
Author(s): Mina Ansari, Mehregan Ebrahimi, Mohammad Reza Fattahi, Michael G. Gardner, Ali Reza Safarpour, Mohammad Ali Faghihi, Kamran Bagheri Lankarani
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.10715

Taxonomic, functional and expression analysis of viral communities associated with marine sponges
Cited by: 9
Author(s): Mary Nguyen, Bernd Wemheuer, Patrick W. Laffy, Nicole S. Webster, Torsten Thomas
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.9054

Intra-lake response of Arcellinida (testate lobose amoebae) to gold mining-derived arsenic contamination in northern Canada: Implications for environmental monitoring
Cited by: 5
Author(s): Nawaf A. Nasser, R. Timothy Patterson, Jennifer M. Galloway, Hendrik Falck
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.7867

Environmental filtering of body size and darker coloration in pollinator communities indicate thermal restrictions on bees, but not flies, at high elevations
Cited by: 18
Author(s): Lindsie M. McCabe, Neil S. Cobb, Bradley J. Butterfield
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.7526

Seasonal dynamics of microbial diversity in the rhizosphere of Ulmus pumila L. var. sabulosa in a steppe desert area of Northern China
Cited by: 12
Author(s): Tianyu Liang, Guang Yang, Yunxia Ma, Quan‐Hong Yao, Yongxiang Ma, Hao Ma, Yang Hu, Ying Yang, Shaoxiong Wang, Yiyong Pan, Gangtie Li
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.7464

Communities of oil palm flower-visiting insects: investigating the covariation of Elaeidobius kamerunicus and other dominant species
Cited by: 8
Author(s): Akhmad Rizali, Bambang Tri Rahardjo, Sri Karindah, Fatma Ramadhani Wahyuningtyas, Nurindah Nurindah, Bandung Sahari, Yann Clough
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.8948

Response of organic carbon mineralization and bacterial communities to soft rock additions in sandy soils
Cited by: 11
Author(s): Zhen Guo, Jichang Han, Juan Li
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.11671

Comparative population genetics of swimming crab host (Portunus pelagicus) and common symbiotic barnacle (Octolasmis angulata) in Vietnam
Cited by: 1
Author(s): Binh T. Dang, Oanh Thi Truong, Sang Tran, Henrik Glenner
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.9694

Effects of variation in forest fragment habitat on black howler monkey demography in the unprotected landscape around Palenque National Park, Mexico
Cited by: 5
Author(s): Keren Klass, Sarie Van Belle, Álvaro Campos-Villanueva, Fernando Mercado Malabet, Alejandro Estrada
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.4197

A historical legacy of antibiotic utilization on bacterial seed banks in sediments
Cited by: 8
Author(s): Laura Madueño, Christophe Paul, Thomas Junier, Zhanna Bayrychenko, Sevasti Filippidou, Karin Beck, Gilbert Greub, Helmut Bürgmann, Pilar Junier
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.95

Generalized linear mixed models can detect unimodal species-environment relationships
Cited by: 26
Author(s): Tahira Jamil, Cajo J. F. ter Braak
Software Mentions: 2
Published: about 13 years ago

10.7717/peerj.7833

Plant community recovery from intense deer grazing depends on reduction of graminoids and the time after exclosure installation in a semi-natural grassland
Cited by: 12
Author(s): Chiaki Otsu, Hayato Iijima, Takuo Nagaike
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.4885

Urbanization alters small rodent community composition but not abundance
Cited by: 6
Author(s): Jessica Noemi Alvarez Guevara, Becky A. Ball
Software Mentions: 2
Published: over 8 years ago

10.1038/ismej.2015.101

Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota
Cited by: 73
Author(s): Eduard Vico Oton, Christopher Quince, Graeme W. Nicol, James I. Prosser, Cécile Gubry‐Rangin
Software Mentions: 2
Published: about 11 years ago

10.1186/s12866-020-01949-7

Biological observations in microbiota analysis are robust to the choice of 16S rRNA gene sequencing processing algorithm: case study on human milk microbiota
Cited by: 14
Author(s): Shirin Moossavi, Faisal Atakora, Kelsey Fehr, Ehsan Khafipour
Software Mentions: 2
Published: about 6 years ago

10.1186/s12866-021-02150-0

Culture-dependent and culture-independent characterization of bacterial community diversity in different types of sandy lands: the case of Minqin County, China
Cited by: 14
Author(s): Yali Wei, Fang Wang, Jiyun Gao, Yongji Huang, Wei Ren, Hongmei Sheng
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.3202

Endosymbiont interference and microbial diversity of the Pacific coast tick,Dermacentor occidentalis, in San Diego County, California
Cited by: 49
Author(s): Nikos Gurfield, Saran Grewal, S Lynnie, Pedro J. Torres, Scott T. Kelley
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pntd.0009428

Deep amplicon sequencing highlights low intra-host genetic variability of Echinococcus multilocularis and high prevalence of the European-type haplotypes in coyotes and red foxes in Alberta, Canada
Cited by: 6
Author(s): Maria A Santa, Andrew M. Rezansoff, Rebecca Chen, John S. Gilleard, Marco Musiani, Kathreen E. Ruckstuhl, Alessandro Massolo
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pntd.0003458

Deep Sequencing of the Trypanosoma cruzi GP63 Surface Proteases Reveals Diversity and Diversifying Selection among Chronic and Congenital Chagas Disease Patients
Cited by: 41
Author(s): Martin S. Llewellyn, Louisa A. Messenger, Alejandro O. Luquetti, Lineth García, Faustino Torrico, Suelene B. N. Tavares, Bachar Cheaib, Nicolas Derôme, Marc Délépine, Céline Baulard, Jean‐François Deleuze, Sascha Sauer, Michael A. Miles
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pntd.0006009

Genome-wide SNPs reveal the drivers of gene flow in an urban population of the Asian Tiger Mosquito, Aedes albopictus
Cited by: 37
Author(s): Thomas L. Schmidt, Gordana Rašić, Dongjing Zhang, Xiaoying Zheng, Zhiyong Xi, Ary A. Hoffmann
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pntd.0005377

Comparative analysis of gut microbiota of mosquito communities in central Illinois
Cited by: 98
Author(s): Ephantus J. Muturi, José L. Ramirez, Alejandro P. Rooney, Chang‐Hyun Kim
Software Mentions: 2
Published: over 9 years ago

10.1186/s12866-019-1601-9

Diet is not the primary driver of bacterial community structure in the gut of litter-feeding cockroaches
Cited by: 21
Author(s): Niclas Lampert, Aram Mikaelyan, Andreas Brune
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0074265

Shifts in the Microbial Community Composition of Gulf Coast Beaches Following Beach Oiling
Cited by: 65
Author(s): Ryan J. Newton, Susan M. Huse, Hilary G. Morrison, Colin S. Peake, Mitchell L. Sogin, Sandra L. McLellan
Software Mentions: 2
Published: about 13 years ago

10.3390/microorganisms8020210

Early Stage Root-Associated Fungi Show a High Temporal Turnover, but Are Independent of Beech Progeny
Cited by: 4
Author(s): Kezia Goldmann, Silke Ammerschubert, Rodica Pena, Andrea Polle, Bian Wu, Tesfaye Wubet, François Buscot
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0032071

The Influence of Coastal Access on Isotope Variation in Icelandic Arctic Foxes
Cited by: 23
Author(s): Fredrik Dalerum, Anna Perbro, Rannveig Magnúsdóttir, Páll Hersteinsson, Anders Angerbjörn
Software Mentions: 2
Published: over 14 years ago

10.1186/s12866-019-1689-y

Long-term impact of fecal transplantation in healthy volunteers
Cited by: 44
Author(s): Oleg V. Goloshchapov, Evgenii I. Olekhnovich, С В Сидоренко, Ivan S. Moiseev, Maxim A. Kucher, Dmitry E. Fedorov, Alexander V. Pavlenko, Alexander I. Manolov, Vladimir Gostev, Vladimir A. Veselovsky, Ksenia M. Klimina, Elena S. Kostryukova, Evgeny Bakin, Alexander N. Shvetcov, Э. Д. Гумбатова, Ruslana V. Klementeva, А. А. Щербаков, М. В. Горчакова, Juan José Egozcue, Vera Pawlowsky‐Glahn, Maria A. Suvorova, А. Б. Чухловин, Vadim M. Govorun, Elena N. Ilina, Boris Afanasyev
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0173903

Diversity and community structure of cyanobacteria and other microbes in recycling irrigation reservoirs
Cited by: 6
Author(s): Ping Kong, Patricia A. Richardson, Chuanxue Hong
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0177374

Drivers of abundance and spatial distribution of reef-associated sharks in an isolated atoll reef system
Cited by: 21
Author(s): David Tickler, Tom B. Letessier, Heather J. Koldewey, Jessica J. Meeuwig
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0233881

Hierarchical effects of historical and environmental factors on lizard assemblages in the upper Madeira River, Brazilian Amazonia
Cited by: 7
Author(s): Gabriela Marques Peixoto, Rafael de Fraga, Maria Carmozina de Araújo, Ígor Luís Kaefer, Albertina P. Lima
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0209788

Regional and global shifts in crop diversity through the Anthropocene
Cited by: 45
Author(s): Adam R. Martin, Marc W. Cadotte, Marney E. Isaac, Rubén Milla, Denis Vile, Cyrille Violle
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0213503

Characterization of the cecum microbiome from wild and captive rock ptarmigans indigenous to Arctic Norway
Cited by: 16
Author(s): Alejandro Salgado-Flores, Alexander Tøsdal Tveit, A-D G Wright, Phillip B. Pope, Monica A. Sundset
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0223501

Fermented cereal-based Munkoyo beverage: Processing practices, microbial diversity and aroma compounds
Cited by: 32
Author(s): Sydney Phiri, Sijmen E. Schoustra, Joost van den Heuvel, Eddy J. Smid, John Shindano, A.R. Linnemann
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0109234

What Goes in Must Come out: Testing for Biases in Molecular Analysis of Arbuscular Mycorrhizal Fungal Communities
Cited by: 15
Author(s): T. E. Anne Cotton, Alex J. Dumbrell, Thorunn Helgason
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0198341

How many landmarks are enough to characterize shape and size variation?
Cited by: 52
Author(s): Akinobu Watanabe
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0232398

Factors affecting the microbiome of Ixodes scapularis and Amblyomma americanum
Cited by: 49
Author(s): R. Jory Brinkerhoff, Chris D. Clark, Kelly M. Ocasio, David T. Gauthier, Wayne L. Hynes
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0145808

Effects of Management on Lichen Species Richness, Ecological Traits and Community Structure in the Rodnei Mountains National Park (Romania)
Cited by: 24
Author(s): Ioana Violeta Ardelean, Christine Keller, Christoph Scheidegger
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0143566

Diversity and Interactions of Wood-Inhabiting Fungi and Beetles after Deadwood Enrichment
Cited by: 16
Author(s): Andreas Floren, Dirk Krüger, Tobias Müller, Marcus Dittrich, Renate Rudloff, Björn Hoppe, K. Eduard Linsenmair
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0066109

Plant and Bird Presence Strongly Influences the Microbial Communities in Soils of Admiralty Bay, Maritime Antarctica
Cited by: 26
Author(s): Lia Cardoso Rocha Saraiva Teixeira, Etienne Yeargeau, Fabiano de Carvalho Balieiro, Marisa de Cássia Píccolo, Raquel S. Peixoto, Charles W. Greer, Alexandre Soares Rosado
Software Mentions: 2
Published: about 13 years ago

10.1186/s12866-016-0660-4

Changes of diet and dominant intestinal microbes in farmland frogs
Cited by: 57
Author(s): Chun Wen Chang, Bing Huang, Si Min Lin, C. C. Huang, Pei Chun Liao
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0142097

Lung Microbiota Changes Associated with Chronic Pseudomonas aeruginosa Lung Infection and the Impact of Intravenous Colistimethate Sodium
Cited by: 10
Author(s): David Collie, Laura Glendinning, John R. W. Govan, Steven H. Wright, Elisabeth M. Thornton, Peter Tennant, C. Doherty, Gerry McLachlan
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0202270

The microbiota of hematophagous ectoparasites collected from migratory birds
Cited by: 18
Author(s): Francesco Cerutti, Paola Modesto, F. Rizzo, Alessandra Cravero, Irena Jurman, Stefano Costa, Mauro Giammarino, Maria Lucia Mandola, Maria Goria, Slobodanka Radović, Federica Cattonaro, Pier Luigi Acutis, Simone Peletto
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0154632

Triclosan Exposure Is Associated with Rapid Restructuring of the Microbiome in Adult Zebrafish
Cited by: 105
Author(s): Christopher A. Gaulke, Carrie L. Barton, Sarah Proffitt, Robert L. Tanguay, Thomas J. Sharpton
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0118566

Deep Sequencing and Ecological Characterization of Gut Microbial Communities of Diverse Bumble Bee Species
Cited by: 20
Author(s): Haw Chuan Lim, Chia‐Ching Chu, Manfredo J. Seufferheld, Sydney A. Cameron
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0126373

Random versus Game Trail-Based Camera Trap Placement Strategy for Monitoring Terrestrial Mammal Communities
Cited by: 126
Author(s): Jeremy J. Cusack, Amy Dickman, J. Marcus Rowcliffe, Chris Carbone, David W. Macdonald, Tim Coulson
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0228165

Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome
Cited by: 11
Author(s): Karen E. Nelson, Emily B. Graham, Alex R. Crump, Sarah Fansler, Evan Arntzen, David W. Kennedy, James C. Stegen
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0095726

The Lung Microbiome of Ugandan HIV-Infected Pneumonia Patients Is Compositionally and Functionally Distinct from That of San Franciscan Patients
Cited by: 49
Author(s): Shoko Iwai, Danhong Huang, Serena Fong, Leah G. Jarlsberg, William Worodria, Samuel Yoo, Adithya Cattamanchi, J. Lucian Davis, Sylvia Kaswabuli, Mark R. Segal, Laurence Huang, Susan V. Lynch
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0075962

Using Next-Generation Sequencing to Analyse the Diet of a Highly Endangered Land Snail (Powelliphanta augusta) Feeding on Endemic Earthworms
Cited by: 46
Author(s): Stéphane Boyer, Stephen D. Wratten, Andrew Holyoake, Jawad Abdelkrim, Robert Cruickshank
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0102130

Characterization of the Bacterial Communities of Life Stages of Free Living Lone Star Ticks (Amblyomma americanum)
Cited by: 77
Author(s): Amanda Jo Williams-Newkirk, Lori A. Rowe, Tonya Mixson‐Hayden, Gregory A. Dasch
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0126981

Biogeography and Genetic Structure in Populations of a Widespread Lichen (Parmelina tiliacea, Parmeliaceae, Ascomycota)
Cited by: 11
Author(s): Jano Núñez‐Zapata, Paloma Cubas, David L. Hawksworth, Ana Crespo
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0195874

Diversity of cultivable fungal endophytes in Paullinia cupana (Mart.) Ducke and bioactivity of their secondary metabolites
Cited by: 28
Author(s): Fábio de Azevedo Silva, Rhavena Graziela Liotti, Ana Paula de Araújo Boleti, Érica de Melo Reis, Marilene Borges Silva Passos, Edson Lucas dos Santos, Olívia Moreira Sampaio, Ana Helena Januário, Carmen Lucia Bassi Branco, Gilvan Ferreira da Silva, Elisabeth Aparecida Furtado de Mendonça, Marcos Antônio Soares
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0207940

Seasonal changes in diet and chemical defense in the Climbing Mantella frog (Mantella laevigata)
Cited by: 16
Author(s): Nora A. Moskowitz, Alexandre B. Roland, Eva K. Fischer, Ndimbintsoa Ranaivorazo, Charles Vidoudez, Marianne T. Aguilar, Sophia Caldera, Jacqueline Chea, Miruna G. Cristus, Jett Crowdis, Bluyé DeMessie, Caroline R. DesJardins-Park, Audrey H. Effenberger, Felipe N. Flores, M. A. Giles, Emma Y. He, Nike S. Izmaylov, ChangWon C. Lee, Nicholas A. Pagel, Krystal K Phu, Leah U. Rosen, Danielle A. Seda, Yong Shen, Santiago Vargas, Andrew W. Murray, Eden Abebe, Sunia A. Trauger, David A. Donoso, Miguel Vences, Lauren A. O’Connell
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0108843

Negative Effects of an Exotic Grass Invasion on Small-Mammal Communities
Cited by: 42
Author(s): Eric D. Freeman, Tiffanny R. Sharp, Randy T. Larsen, Rob Knight, Steven J. Slater, Brock R. McMillan
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0189731

Temporal and spatial differences between taxonomic and trait biodiversity in a large marine ecosystem: Causes and consequences
Cited by: 24
Author(s): Tim Spaanheden Dencker, Laurène Pécuchet, Esther Beukhof, Katherine Richardson, Mark Payne, Martin Lindegren
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0233733

Stream fish metacommunity organisation across a Neotropical ecoregion: The role of environment, anthropogenic impact and dispersal-based processes
Cited by: 21
Author(s): Pedro Paulino Borges, Murilo S. Dias, Fernando Rogério Carvalho, Lílian Casatti, Paulo Santos Pompeu, Maurício Cetra, Francisco Leonardo Tejerina‐Garro, Yzél Rondon Súarez, João Carlos Nabout, Fabrício Barreto Teresa
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-79778-x

Performance comparison of two reduced-representation based genome-wide marker-discovery strategies in a multi-taxon phylogeographic framework
Cited by: 5
Author(s): Philipp Kirschner, Wolfgang Arthofer, Stefanie Pfeifenberger, Eliška Záveská, Peter Schönswetter, Alexander Gamisch, Andreas Hilpold, Ovidiu Paun, Isabel Sanmartín, Emiliano Trucchi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0046141

Particulate Organic Matter Distribution along the Lower Amazon River: Addressing Aquatic Ecology Concepts Using Fatty Acids
Cited by: 21
Author(s): Jean-Michel Mortillaro, François Rigal, Hervé Rybarczyk, Marcelo Bernardes, Gwénaël Abril, Tarik Méziane
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0214068

Impact of urbanization on predator and parasitoid insects at multiple spatial scales
Cited by: 40
Author(s): Daria Corcos, Pierfilippo Cerretti, Valerio Caruso, Maurizio Mei, Mirella Falco, Lorenzo Marini
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0142040

Temporal Genetic Variance and Propagule-Driven Genetic Structure Characterize Naturalized Rainbow Trout (Oncorhynchus mykiss) from a Patagonian Lake Impacted by Trout Farming
Cited by: 5
Author(s): Javiera N. Benavente, Lisa W. Seeb, James E. Seeb, Iván Arisméndi, Cristián E. Hernández, Gonzalo Gajardo, Ricardo Galleguillos, María I. Cádiz, Selim Musleh, Daniel Gómez-Uchida
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0174159

Characterization of spatial distribution of the bacterial community in the South Sea of Korea
Cited by: 24
Author(s): Ji‐Hui Seo, Ilnam Kang, Seung‐Jo Yang, Jang-Cheon Cho
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0247475

Wastewater treatment works change the intestinal microbiomes of insectivorous bats
Cited by: 6
Author(s): Calvin Mehl, M. Corrie Schoeman, Tomasz Janusz Sanko, Cornelius Carlos Bezuidenhout, Charlotte Mienie, Wolfgang Preiser, Daléne Vosloo
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0185527

Woody lianas increase in dominance and maintain compositional integrity across an Amazonian dam-induced fragmented landscape
Cited by: 12
Author(s): Isabel L. Jones, Carlos A. Peres, Maíra Benchimol, Lynsey Bunnefeld, Daisy H. Dent
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0170683

Evidence of a Shift in the Littoral Fish Community of the Sacramento-San Joaquin Delta
Cited by: 16
Author(s): Brian Mahardja, Mary Jade Farruggia, Brian M. Schreier, Ted Sommer
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0232446

Dynamic changes in bacterial communities in the recirculating nutrient solution of cucumber plug seedlings cultivated in an ebb-and-flow subirrigation system
Cited by: 4
Author(s): C.Y. Dong, Qian Li, Lingling Wang, Qingmao Shang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0210293

Conservation of Neotropical migratory birds in tropical hardwood and oil palm plantations
Cited by: 19
Author(s): Ruth E. Bennett, Wendy Leuenberger, Bianca B. Bosarreyes Leja, Alejandro Sagone Cáceres, Kirsten E. Johnson, Jeffery L. Larkin
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0086288

Ungulate Browsing Maintains Shrub Diversity in the Absence of Episodic Disturbance in Seasonally-Arid Conifer Forest
Cited by: 20
Author(s): Burak K. Pekin, Michael J. Wisdom, Bryan A. Endress, Bridgett J. Naylor, Catherine G. Parks
Software Mentions: 2
Published: over 12 years ago

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