10.7554/eLife.50240

Adjusting for age improves identification of gut microbiome alterations in multiple diseases
Cited by: 100
Author(s): Tarini Shankar Ghosh, Mrinmoy Das, Ian B. Jeffery, Paul W. O’Toole
Software Mentions: 3
Published: over 6 years ago

10.1186/s12866-021-02139-9

Identification of cutaneous fungi and mites in adult atopic dermatitis: analysis by targeted 18S rRNA amplicon sequencing
Cited by: 8
Author(s): Sofie Marie Edslev, Paal Skytt Andersen, Tove Agner, Ditte Marie Lindhardt Saunte, Anna Cäcilia Ingham, Thor Bech Johannesen, Maja‐Lisa Clausen
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2017.00391

Phylogeny Predicts the Quantity of Antimalarial Alkaloids within the Iconic Yellow Cinchona Bark (Rubiaceae: Cinchona calisaya)
Cited by: 35
Author(s): Carla Maldonado, Christopher J. Barnes, Claus Cornett, Else Holmfred, Steen Honoré Hansen, Claes Persson, Alexandre Antonelli, Nina Rønsted
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2019.00481

Abiotic and Landscape Factors Constrain Restoration Outcomes Across Spatial Scales of a Widespread Invasive Plant
Cited by: 20
Author(s): Christine B. Rohal, Chad R. Cranney, Karin M. Kettenring
Software Mentions: 3
Published: over 7 years ago

10.1186/s12866-019-1494-7

Changes in the gut microbiome and fermentation products concurrent with enhanced longevity in acarbose-treated mice
Cited by: 171
Author(s): Brenda K. Smith, Richard A. Miller, Aaron C. Ericsson, David Harrison, Randy Strong, Thomas M. Schmidt
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.13720

Benefits of jasmonate-dependent defenses against vertebrate herbivores in nature
Cited by: 36
Author(s): Ricardo A. R. Machado, Mark S. McClure, Maxime Hervé, Ian Thomas Baldwin, Matthias Erb
Software Mentions: 3
Published: about 10 years ago

10.3389/fpls.2020.520834

In-Depth Observation on the Microbial and Fungal Community Structure of Four Contrasting Tomato Cultivation Systems in Soil Based and Soilless Culture Systems
Cited by: 7
Author(s): Oliver Grunert, Emma Hernandez-Sanabria, Saskia Buysens, Stefaan De Neve, Marie-Christine Van Labeke, Dirk Reheul, Nico Boon
Software Mentions: 3
Published: almost 6 years ago

10.1186/s42523-021-00112-5

Functional enrichment of gut microbiome by early supplementation of Bacillus based probiotic in cage free hens: a field study
Cited by: 6
Author(s): Samiullah Khan, Kapil K. Chousalkar
Software Mentions: 3
Published: about 5 years ago

10.3389/fpls.2019.00932

Facilitation of Balsam Fir by Trembling Aspen in the Boreal Forest: Do Ectomycorrhizal Communities Matter?
Cited by: 8
Author(s): Mélissande Nagati, Mélanie Roy, Annie DesRochers, Sophie Manzi, Yves Bergeron, Monique Gardes
Software Mentions: 3
Published: about 7 years ago

10.3389/fpls.2020.559697

Morphological Differences in Pinus strobiformis Across Latitudinal and Elevational Gradients
Cited by: 10
Author(s): Alejandro Leal‐Sàenz, Kristen M. Waring, Mitra Menon, Samuel A. Cushman, Andrew J. Eckert, Lluvia Flores‐Rentería, José Ciro Hernández-Díaz, Carlos A. López-Sánchez, José Hugo Martínez-Guerrero, Christian Wehenkel
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2017.01242

Biogeochemical and Ecomorphological Niche Segregation of Mediterranean Woody Species along a Local Gradient
Cited by: 23
Author(s): Enrique G. de la Riva, Teodoro Marañón, Cyrille Violle, Rafael Villar, Ignacio Manuel Pérez-Ramos
Software Mentions: 3
Published: about 9 years ago

10.3389/fpls.2018.00898

Interaction Between Plant Competition and Rhizospheric Bacterial Community Influence Secondary Succession of Abandoned Farmland on the Loess Plateau of China
Cited by: 16
Author(s): Caili Sun, Guobin Liu, Sha Xue
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2018.00196

Long-Term Vegetation Dynamics in a Megadiverse Hotspot: The Ice-Age Record of a Pre-montane Forest of Central Ecuador
Cited by: 9
Author(s): Encarni Montoya, Hayley Frances Keen, Carmen Luzuriaga, William D. Gosling
Software Mentions: 3
Published: over 8 years ago

10.3389/fpls.2020.576407

Hybrid Speciation and Introgression Both Underlie the Genetic Structures and Evolutionary Relationships of Three Morphologically Distinct Species of Lilium (Liliaceae) Forming a Hybrid Zone Along an Elevational Gradient
Cited by: 6
Author(s): Yongxing Gao, AJ Harris, Huaicheng Li, Xin‐Fen Gao
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2017.01834

Root and Rhizosphere Bacterial Phosphatase Activity Varies with Tree Species and Soil Phosphorus Availability in Puerto Rico Tropical Forest
Cited by: 50
Author(s): K. G. M. Cabugao, Collin M. Timm, Alyssa A. Carrell, Joanne Childs, Tse-Yuan S. Lu, Dale A. Pelletier, David J. Weston, R. J. Norby
Software Mentions: 3
Published: almost 9 years ago

10.3389/fpls.2018.01230

Root JA Induction Modifies Glucosinolate Profiles and Increases Subsequent Aboveground Resistance to Herbivore Attack in Cardamine hirsuta
Cited by: 13
Author(s): Moe Bakhtiari, Gaétan Glauser, Sergio Rasmann
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2017.01381

Petroleum Contamination and Plant Identity Influence Soil and Root Microbial Communities While AMF Spores Retrieved from the Same Plants Possess Markedly Different Communities
Cited by: 25
Author(s): Bachir Iffis, Marc St‐Arnaud, Mohamed Hijri
Software Mentions: 3
Published: about 9 years ago

10.3389/fpls.2016.01345

Rhizospheric Bacterial Community of Endemic Rhododendron arboreum Sm. Ssp. delavayi along Eastern Himalayan Slope in Tawang
Cited by: 12
Author(s): Rajal Debnath, Archana Yadav, Vijai Kumar Gupta, Bhim Pratap Singh, Pratap Jyoti Handique, Ratul Saikia
Software Mentions: 3
Published: about 10 years ago

10.1186/s12866-021-02156-8

Microbial predation accelerates granulation and modulates microbial community composition
Cited by: 7
Author(s): Siew Herng Chan, Muhammad Hafiz Ismail, Chuan Hao Tan, Scott A. Rice, Diane McDougald
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2021.639368

Cycad-Weevil Pollination Symbiosis Is Characterized by Rapidly Evolving and Highly Specific Plant-Insect Chemical Communication
Cited by: 7
Author(s): Shayla Salzman, Damon J. Crook, Michael Calonje, Dennis Wm. Stevenson, Naomi E. Pierce, Robin Hopkins
Software Mentions: 3
Published: over 5 years ago

10.1186/s12866-020-01981-7

A network approach to investigating the key microbes and stability of gut microbial communities in a mouse neuropathic pain model
Cited by: 9
Author(s): Guo-Jie Brandon-Mong, Grace Tzun-Wen Shaw, Wei‐Hsin Chen, Chien‐Chang Chen, Daryi Wang
Software Mentions: 3
Published: almost 6 years ago

10.3390/nu11051063

Tart Cherry Concentrate Does Not Alter the Gut Microbiome, Glycaemic Control or Systemic Inflammation in a Middle-Aged Population
Cited by: 22
Author(s): Rebecca Lear, Mary F. O’Leary, Lee O’Brien Andersen, Corey C. Holt, Christen Rune Stensvold, Mark van der Giezen, Joanna L. Bowtell
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2016.02064

Cowpea Nodules Harbor Non-rhizobial Bacterial Communities that Are Shaped by Soil Type Rather than Plant Genotype
Cited by: 76
Author(s): Jakson Leite, Doreen Fischer, Luc Felicianus Marie Rouws, Paulo Ivan Fernandes‐Júnior, Andreas Hofmann, Susanne Kublik, Michael Schloter, Gustavo Ribeiro Xavier, Viviane Radl
Software Mentions: 3
Published: over 9 years ago

10.1186/1471-2180-12-203

Metagenomic and geochemical characterization of pockmarked sediments overlaying the Troll petroleum reservoir in the North Sea
Cited by: 27
Author(s): Othilde Else Håvelsrud, Thomas Haverkamp, Tom Kristensen, Kjetill S. Jakobsen, Anne Gunn Rike
Software Mentions: 3
Published: about 14 years ago

10.3389/fpls.2019.01078

Salinity in Autumn-Winter Season and Fruit Quality of Tomato Landraces
Cited by: 24
Author(s): Tommaso Michele Moles, Rita de Brito Francisco, Lorenzo Mariotti, Antonio Pompeiano, Antonio Lupini, Luca Incrocci, Giulia Carmassi, Andrea Scartazza, Laura Pistelli, Lorenzo Guglielminetti, Alberto Pardossi, Francesco Sunseri, Stefan Hörtensteiner, Diana Santelia
Software Mentions: 3
Published: almost 7 years ago

10.7554/eLife.35066

Bleaching causes loss of disease resistance within the threatened coral species Acropora cervicornis
Cited by: 81
Author(s): Erinn M. Muller, Erich Bartels, Iliana B. Baums
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2020.01028

Bacterial Diversity and Interaction Networks of Agave lechuguilla Rhizosphere Differ Significantly From Bulk Soil in the Oligotrophic Basin of Cuatro Cienegas
Cited by: 19
Author(s): Nguyen E. López-Lozano, Andrea Echeverría Molinar, Elizabeth Alejandra Ortiz Durán, Maribel Hernández-Rosales, Valeria Souza
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2017.01263

Application of Mycorrhiza and Soil from a Permaculture System Improved Phosphorus Acquisition in Naranjilla
Cited by: 13
Author(s): Sarah Symanczik, Michelle Gisler, Cécile Thonar, Klaus Schlaeppi, Marcel van der Heijden, Ansgar Kahmen, Thomas Boller, Paul Mäder
Software Mentions: 3
Published: about 9 years ago

10.7554/eLife.60608

MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut
Cited by: 44
Author(s): Martial Marbouty, Agnès Thierry, Gaël A. Millot, Romain Koszul
Software Mentions: 3
Published: over 5 years ago

10.1186/s12866-021-02284-1

Comparison of three amplicon sequencing approaches to determine staphylococcal populations on human skin
Cited by: 3
Author(s): Charlotte Marie Ahle, Kristian Stødkilde, Anja Poehlein, Wolfgang R. Streit, Jennifer Hüpeden, Holger Brüggemann
Software Mentions: 3
Published: about 5 years ago

10.3389/fpls.2019.00765

Large Scale Screening of Epichloë Endophytes Infecting Schedonorus pratensis and Other Forage Grasses Reveals a Relation Between Microsatellite-Based Haplotypes and Loline Alkaloid Levels
Cited by: 13
Author(s): Giovanni Cagnano, Niels Roulund, Christian S. Jensen, Flavia Pilar Forte, Torben Asp, Adrian Leuchtmann
Software Mentions: 3
Published: over 7 years ago

10.3390/nu12030683

Changes in Intestinal Microbiota and Predicted Metabolic Pathways During Colonic Fermentation of Mango (Mangifera indica L.)—Based Bar Indigestible Fraction
Cited by: 19
Author(s): Wilbert Gutiérrez-Sarmiento, Sonia G. Sáyago-Ayerdi, Isabel Goñi, Federico Antonio Gutiérrez-Miceli, Miguel Abud‐Archila, José del Carmen Rejón Orantes, Reiner Rincón-Rosales, Betsy Anaid Peña-Ocaña, Víctor Manuel Ruíz-Valdiviezo
Software Mentions: 3
Published: over 6 years ago

10.1186/s12866-020-01724-8

The influence of blood on the human gut microbiome
Cited by: 23
Author(s): Thierry Chénard, Mandy Malick, Jean Dubé, Éric Massé
Software Mentions: 3
Published: over 6 years ago

10.3390/jcm9061882

Transient and Persistent Gastric Microbiome: Adherence of Bacteria in Gastric Cancer and Dyspeptic Patient Biopsies after Washing
Cited by: 19
Author(s): Malene Roed Spiegelhauer, Juozas Kupčinskas, Thor Bech Johannesen, Mindaugas Urba, Jurgita Skiecevičienė, Laimas Virginijus Jonaitis, Tove Havnhøj Frandsen, Limas Kupčinskas, Kurt Fuursted, Leif Percival Andersen
Software Mentions: 3
Published: over 6 years ago

10.1016/j.jcf.2020.05.013

The fungal airway microbiome in cystic fibrosis and non-cystic fibrosis bronchiectasis
Cited by: 31
Author(s): Leah Cuthbertson, I. Felton, Phillip James, Michael J. Cox, Diana Bilton, Silke Schelenz, Michael R. Loebinger, Woc Cookson, Nicholas J. Simmonds, Miriam F. Moffatt
Software Mentions: 3
Published: over 5 years ago

10.1111/1365-2745.12199

Interactive effects of landscape history and current management on dispersal trait diversity in grassland plant communities
Cited by: 27
Author(s): Oliver Purschke, Martin T. Sykes, Peter Poschlod, Stefan G. Michalski, Christine Römermann, Walter Durka, Ingolf Kühn, Honor C. Prentice
Software Mentions: 3
Published: almost 13 years ago

10.1111/1365-2745.13160

Relationships between plant traits, soil properties and carbon fluxes differ between monocultures and mixed communities in temperate grassland
Cited by: 47
Author(s): Jonathan R. De Long, Benjamin G. Jackson, Anna Wilkinson, William J. Pritchard, Simon Oakley, Kelly E. Mason, Jörg G. Stephan, Nicholas J. Ostle, David Johnson, Elizabeth M. Baggs, Richard D. Bardgett
Software Mentions: 3
Published: over 7 years ago

10.1111/1365-2745.13299

Rhizosphere and litter feedbacks to range‐expanding plant species and related natives
Cited by: 13
Author(s): Marta Manrubia, Wim H. van der Putten, Carolin Weser, G. F. Veen
Software Mentions: 3
Published: almost 7 years ago

10.1111/1365-2745.13409

Community‐level interactions between plants and soil biota during range expansion
Cited by: 13
Author(s): Kadri Koorem, L. Basten Snoek, J. Bloem, Stefan Geisen, Olga Kostenko, Marta Manrubia, Kelly S. Ramirez, Carolin Weser, Rutger A. Wilschut, W.H. van der Putten
Software Mentions: 3
Published: over 6 years ago

10.1186/s13002-018-0219-6

Traditional ecological knowledge-based assessment of threatened woody species and their potential substitutes in the Atakora mountain chain, a threatened hotspot of biodiversity in Northwestern Benin, West Africa
Cited by: 16
Author(s): Pierre Agbani, Konoutan Médard Kafoutchoni, Kolawolé Valère Salako, Rodrigue Castro Gbèdomon, Ahuéfa Mauricel Kégbé, Karen Hahn, Brice Sinsin
Software Mentions: 3
Published: over 8 years ago

10.1186/s13002-018-0267-y

Species richness, cultural importance, and prioritization of wild spices for conservation in the Sudano-Guinean zone of Benin (West Africa)
Cited by: 8
Author(s): Konoutan Médard Kafoutchoni, Rodrigue Idohou, Anthony Egeru, Kolawolé Valère Salako, Clément Agbangla, Aristide Cossi Adomou, Achille Ephrem Assogbadjo
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12866-017-1111-6

Temporal dynamics in microbial soil communities at anthrax carcass sites
Cited by: 11
Author(s): Karoline Valseth, Camilla Nesbø, W. Ryan Easterday, Wendy C. Turner, Jaran Strand Olsen, Nils Chr. Stenseth, Thomas Haverkamp
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12866-021-02237-8

Ecological strategies of biological and chemical control agents on wildfire disease of tobacco (Nicotiana tabacum L.)
Cited by: 5
Author(s): Tianbo Liu, Yanling Gu, Zhi Zhou, Zhenghua Liu, Huaqun Yin, Chong Qin, Tuyong Yi, Jiemeng Tao
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms18081727

Spatial Distribution Patterns of Root-Associated Bacterial Communities Mediated by Root Exudates in Different Aged Ratooning Tea Monoculture Systems
Cited by: 54
Author(s): Yasir Arafat, Xiaoya Wei, Yuhang Jiang, Ting Chen, Hafiz Sohaib Ahmed Saqib, Shan Lin, Wenxiong Lin
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.ppat.1008251

CFTR dysregulation drives active selection of the gut microbiome
Cited by: 50
Author(s): Stacey Meeker, Kevin S Mears, Naseer Sangwan, M. Brittnacher, Eli Weiss, Piper M. Treuting, Nicholas Tolley, Charles E. Pope, Kyle R. Hager, Anh T. Vo, Ji-Sun Paik, Charles W. Frevert, Hillary S. Hayden, Lucas R. Hoffman, Samuel I. Miller, Adeline M. Hajjar
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms19113351

Age- and Genotype-Specific Effects of the Angiotensin-Converting Enzyme Inhibitor Lisinopril on Mitochondrial and Metabolic Parameters in Drosophila melanogaster
Cited by: 14
Author(s): Karis A. Ederer, Kelly Jin, Sarah Bouslog, Lu Wang, Gregory S. Gorman, Glenn C. Rowe, Peter M. Abadir, Daniel Raftery, Douglas R. Moellering, Daniel Promislow, Patricia Jumbo-Lucioni, María De Luca
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12866-019-1585-5

Variations of bacterial community during the decomposition of Microcystis under different temperatures and biomass
Cited by: 6
Author(s): Shuren Wang, Dayong Zhao, Jin Zeng, Huimin Xu, Rui Huang, Congcong Jiao, Lin Guo
Software Mentions: 3
Published: about 7 years ago

10.1186/1471-2180-12-121

Molecular analysis of meso- and thermophilic microbiota associated with anaerobic biowaste degradation
Cited by: 36
Author(s): Jarmo Ritari, Kaisa Koskinen, Jenni Hultman, Jukka Kurola, Maritta Kymäläinen, Martin Romantschuk, Lars Paulín, Petri Auvinen
Software Mentions: 3
Published: over 14 years ago

10.1098/rspb.2016.0469

Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence
Cited by: 54
Author(s): Robert A. Quinn, Mark J. A. Vermeij, Aaron C. Hartmann, Ines Galtier d'Auriac, Sean Benler, Andreas F. Haas, Steven D. Quistad, Yan Wei Lim, Mark Little, Stuart A. Sandin, Jennifer E. Smith, Pieter C. Dorrestein, Forest Rohwer
Software Mentions: 3
Published: over 10 years ago

10.1186/s12866-020-02024-x

High-throughput sequencing analysis of the rhizosphere arbuscular mycorrhizal fungi (AMF) community composition associated with Ferula sinkiangensis
Cited by: 15
Author(s): Yunfeng Luo, Zhongke Wang, Ya-Ling He, Guifang Li, Xinhua Lv, Zhuang Li
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12866-018-1174-z

Environmental factors shaping the diversity of bacterial communities that promote rice production
Cited by: 45
Author(s): Zhaohui Wu, Qingshu Liu, Zhenyu Li, Wanli Cheng, Jun Sun, Zhaohui Guo, Yongmei Li, Jianqun Zhou, Delong Meng, Hongbo Li, Ping Lei, Huaqun Yin
Software Mentions: 3
Published: over 8 years ago

10.3390/ijms20020415

Understanding Changes in Tomato Cell Walls in Roots and Fruits: The Contribution of Arbuscular Mycorrhizal Colonization
Cited by: 10
Author(s): Matteo Chialva, Jonatan U. Fangel, Mara Novero, Inès Zouari, Alessandra Salvioli di Fossalunga, William G. T. Willats, Paola Bonfante, Raffaella Balestrini
Software Mentions: 3
Published: over 7 years ago

10.1098/rspb.2020.2531

Vocal convergence in a multi-level primate society: insights into the evolution of vocal learning
Cited by: 12
Author(s): Julia Fischer, Franziska Wegdell, Franziska Trede, Federica Dal Pesco, Kurt Hammerschmidt
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12866-018-1326-1

Gut microbiota of preterm infants supplemented with probiotics: sub-study of the ProPrems trial
Cited by: 46
Author(s): Erica L Plummer, Dieter Bulach, Gerald L Murray, Susan E Jacobs, Sepehr N. Tabrizi, Suzanne M. Garland
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12920-019-0494-7

Early gut microbiota signature of aGvHD in children given allogeneic hematopoietic cell transplantation for hematological disorders
Cited by: 48
Author(s): Elena Biagi, Daniele Zama, Simone Rampelli, Silvia Turroni, Patrizia Brigidi, Clarissa Consolandi, Marco Severgnini, Eleonora Picotti, Pietro Gasperini, Pietro Merli, Nunzia Decembrino, Marco Zecca, Simone Cesaro, Maura Faraci, Arcangelo Prete, Franco Locatelli, Andrea Pession, Marco Candela, Riccardo Masetti
Software Mentions: 3
Published: over 7 years ago

10.1098/rsos.170796

Benthic communities under anthropogenic pressure show resilience across the Quaternary
Cited by: 13
Author(s): Julieta C. Martinelli, Luis P. Soto, Jorge González, Marcelo M. Rivadeneira
Software Mentions: 3
Published: about 9 years ago

10.1098/rsos.172284

Drivers of temporal beta diversity of a benthic community in a seasonally hypoxic fjord
Cited by: 20
Author(s): Jackson W. F. Chu, Curtis Curkan, Verena Tunnicliffe
Software Mentions: 3
Published: over 8 years ago

10.1098/rsos.180835

Assessing mesophotic coral ecosystems inside and outside a Caribbean marine protected area
Cited by: 16
Author(s): Erika Gress, Maria J. Arroyo-Gerez, Georgina Wright, Dominic A. Andradi‐Brown
Software Mentions: 3
Published: almost 8 years ago

10.3390/ijms20163980

A Metagenomic-Based Approach for the Characterization of Bacterial Diversity Associated with Spontaneous Malolactic Fermentations in Wine
Cited by: 38
Author(s): Carmen Berbegal, Luigimaria Borruso, Mariagiovanna Fragasso, Maria Tufariello, Pasquale Russo, Lorenzo Brusetti, Giuseppe Spano, Vittorio Capozzi
Software Mentions: 3
Published: about 7 years ago

10.1098/rsos.191053

Freshwater hydrozoan blooms alter activity and behaviour of territorial cichlids in Lake Tanganyika
Cited by: 5
Author(s): Aneesh P. H. Bose, Holger Zimmermann, Kristina M. Sefc
Software Mentions: 3
Published: almost 7 years ago

10.3390/ijms21010272

Physiological and Metabolic Effects of Yellow Mangosteen (Garcinia dulcis) Rind in Rats with Diet-Induced Metabolic Syndrome
Cited by: 24
Author(s): Oliver D. John, Peter Mouatt, Marwan E. Majzoub, Torsten Thomas, Sunil K. Panchal, Lindsay Brown
Software Mentions: 3
Published: over 6 years ago

10.1098/rsos.190494

Mechanisms and drivers of belemnite body-size dynamics across the Pliensbachian–Toarcian crisis
Cited by: 24
Author(s): Patrícia Rita, Paulina Nätscher, Luís V. Duarte, Robert Weis, Kenneth De Baets
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12864-019-5457-z

Metagenomic and metatranscriptomic analysis of human prostate microbiota from patients with prostate cancer
Cited by: 70
Author(s): Yang Feng, Varune Rohan Ramnarine, Robert H. Bell, Stanislav V. Volik, Elai Davicioni, Vanessa M. Hayes, Shancheng Ren, Colin C. Collins
Software Mentions: 3
Published: over 7 years ago

10.3390/nu12041122

Saccharin Supplementation Inhibits Bacterial Growth and Reduces Experimental Colitis in Mice
Cited by: 14
Author(s): Annika Sünderhauf, René Pagel, Axel Künstner, Anika E. Wagner, Jan Rupp, Saleh M. Ibrahim, Stefanie Derer, Christian Sina
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-020-07087-8

Do the human gut metagenomic species possess the minimal set of core functionalities necessary for life?
Cited by: 2
Author(s): Matteo Soverini, Simone Rampelli, Silvia Turroni, Patrizia Brigidi, Elena Biagi, Marco Candela
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12864-019-5474-y

Microbiota in the apical root canal system of tooth with apical periodontitis
Cited by: 33
Author(s): Wenhao Qian, Ting Ma, Mao Ye, Zhiyao Li, Yuanhua Liu, Hao Pei
Software Mentions: 3
Published: over 7 years ago

10.1186/s12931-018-0878-9

Smoking is associated with quantifiable differences in the human lung DNA virome and metabolome
Cited by: 26
Author(s): Ann C. Gregory, Matthew B. Sullivan, Leopoldo N. Segal, Brian C. Keller
Software Mentions: 3
Published: about 8 years ago

10.1186/s12931-019-1080-4

Chronic obstructive pulmonary disease upper airway microbiota alpha diversity is associated with exacerbation phenotype: a case-control observational study
Cited by: 29
Author(s): Alexa A. Pragman, Katherine A. Knutson, Trevor Gould, Richard E. Isaacson, Cavan Reilly, Christine Wendt
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-021-07907-5

Genomic signatures of natural selection at phenology-related genes in a widely distributed tree species Fagus sylvatica L
Cited by: 5
Author(s): Joanna Meger, Bartosz Ulaszewski, Jarosław Burczyk
Software Mentions: 3
Published: about 5 years ago

10.1016/j.xpro.2020.100061

Protocol for Projecting Allele Frequency Change under Future Climate Change at Adaptive-Associated Loci
Cited by: 4
Author(s): Meghan Blumstein, Andrew D. Richardson, David J. Weston, Jin Zhang, Wellington Muchero, Robin Hopkins
Software Mentions: 3
Published: about 6 years ago

10.1186/s12864-020-07307-1

Meta-Apo improves accuracy of 16S-amplicon-based prediction of microbiome function
Cited by: 12
Author(s): Gongchao Jing, Yufeng Zhang, Wenzhi Cui, Lu Liu, Jian Xu, Xiaoquan Su
Software Mentions: 3
Published: over 5 years ago

10.1126/sciadv.aba2578

Biodiversity intervention enhances immune regulation and health-associated commensal microbiota among daycare children
Cited by: 150
Author(s): Marja I. Roslund, Riikka Puhakka, Mira Grönroos, Noora Nurminen, Sami Oikarinen, Ahmad Mahfuz Gazali, Ondřej Cinek, Lenka Kramná, Nathan Siter, Heli K. Vari, Laura Soininen, Nan Hui, Juho Rajaniemi, Tuure Kinnunen, Olli H. Laitinen, Heikki Hyöty, Aki Sinkkonen
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12864-017-3808-1

Fast and robust adjustment of cell mixtures in epigenome-wide association studies with SmartSVA
Cited by: 51
Author(s): Jun Chen, Ehsan Behnam, Jinyan Huang, Miriam F. Moffatt, Daniel J. Schaid, Liming Liang, Xihong Lin
Software Mentions: 3
Published: over 9 years ago

10.1186/s12864-015-1646-6

Early life microbial colonization of the gut and intestinal development differ between genetically divergent broiler lines
Cited by: 91
Author(s): Dirkjan Schokker, Gosse Veninga, S.A. Vastenhouw, Alex Bossers, F.M. de Bree, L.M.T.E. Kaal-Lansbergen, Johanna M.J. Rebel, M.A. Smits
Software Mentions: 3
Published: over 11 years ago

10.1007/s13280-020-01343-7

Ecosystem restoration in fire-managed savanna woodlands: Effects on biodiversity, local livelihoods and fire intensity
Cited by: 8
Author(s): Maria U. Johansson, Firew Bekele Abebe, Sileshi Nemomissa, Tamrat Bekele, Kristoffer Hylander
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-021-08010-5

Metagenomic investigation of potential abortigenic pathogens in foetal tissues from Australian horses
Cited by: 5
Author(s): Rumana Akter, Charles El-Hage, Fiona M. Sansom, Joan Carrick, Joanne M. Devlin, Alistair R. Legione
Software Mentions: 3
Published: almost 5 years ago

10.1038/srep12731

Local-scale Partitioning of Functional and Phylogenetic Beta Diversity in a Tropical Tree Assemblage
Cited by: 35
Author(s): Jie Yang, Nathan G. Swenson, Guocheng Zhang, Xiuqin Ci, Min Cao, Liqing Sha, Jie Li, J. W. Ferry Slik, Luxiang Lin
Software Mentions: 3
Published: about 11 years ago

10.1038/srep12978

From lithotroph- to organotroph-dominant: directional shift of microbial community in sulphidic tailings during phytostabilization
Cited by: 42
Author(s): Xiaofang Li, Philip L. Bond, Joy D. Van Nostrand, Jizhong Zhou, Longbin Huang
Software Mentions: 3
Published: about 11 years ago

10.1038/srep13185

Co-extinction in a host-parasite network: identifying key hosts for network stability
Cited by: 39
Author(s): Tad Dallas, E. A. Cornelius
Software Mentions: 3
Published: about 11 years ago

10.1038/srep15274

Evidence of bacterioplankton community adaptation in response to long-term mariculture disturbance
Cited by: 39
Author(s): Jinbo Xiong, Heping Chen, C. Hu, Xiansen Ye, Dingjiang Kong, Demin Zhang
Software Mentions: 3
Published: almost 11 years ago

10.1038/srep10540

Fractal features of soil particle size distribution in newly formed wetlands in the Yellow River Delta
Cited by: 29
Author(s): Junbao Yu, Xiaofei Lv, Ben Ma, Huifeng Wu, Siyao Du, Mo Zhou, Yanming Yang, Guoqi Han
Software Mentions: 3
Published: over 11 years ago

10.1038/srep17141

Preterm gut microbiota and metabolome following discharge from intensive care
Cited by: 36
Author(s): Christopher J. Stewart, Tom Skeath, Andrew Nelson, Sara Johansson Fernstad, Emma C. L. Marrs, John D. Perry, Stephen Cummings, Janet Berrington, Nicholas D. Embleton
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12864-018-4579-z

Combining six genome scan methods to detect candidate genes to salinity in the Mediterranean striped red mullet (Mullus surmuletus)
Cited by: 42
Author(s): Alicia Dalongeville, Laura Benestan, David Mouillot, Stéphane Lobreaux, StĂŠphanie Manel
Software Mentions: 3
Published: over 8 years ago

10.1038/srep18563

Gut bacterial diversity of the tribes of India and comparison with the worldwide data
Cited by: 106
Author(s): Madhusmita Dehingia, Kanchal Thangjam devi, Narayan Chandra Talukdar, Rupjyoti Talukdar, Nageshwar Reddy, Sharmila S. Mande, Manab Deka, Mojibur R. Khan
Software Mentions: 3
Published: over 10 years ago

10.3390/ijms22031460

Diazotroph Paenibacillus triticisoli BJ-18 Drives the Variation in Bacterial, Diazotrophic and Fungal Communities in the Rhizosphere and Root/Shoot Endosphere of Maize
Cited by: 16
Author(s): Yongbin Li, Li Qin, Sanfeng Chen
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms22041567

Mild Effects of Sunscreen Agents on a Marine Flatfish: Oxidative Stress, Energetic Profiles, Neurotoxicity and Behaviour in Response to Titanium Dioxide Nanoparticles and Oxybenzone
Cited by: 16
Author(s): Ana Carvalhais, Bárbara Luísa Corradi Pereira, Mariangela Sabato, Rafaela Seixas, Marina Dolbeth, Ana Marques, Sofia Guilherme, Patrícia Pereira, Mário Pacheco, C.L. Mieiro
Software Mentions: 3
Published: over 5 years ago

10.1038/srep19706

Distribution of vascular epiphytes along a tropical elevational gradient: disentangling abiotic and biotic determinants
Cited by: 48
Author(s): Yi Ding, Guangfu Liu, Jian Zhang, Xinghui Lu, Jihong Huang
Software Mentions: 3
Published: over 10 years ago

10.1186/s12864-016-3369-8

Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles
Cited by: 39
Author(s): Markus Schlegel, Martin Münsterkötter, Ulrich Güldener, Rémy Bruggmann, Angelo Duò, Matthieu Hainaut, Bernard Henrissat, Christian M. K. Sieber, Dirk Hoffmeister, Christoph R. Grünig
Software Mentions: 3
Published: almost 10 years ago

10.1186/s12864-020-6445-z

Integrated genome-wide investigations of the housefly, a global vector of diseases reveal unique dispersal patterns and bacterial communities across farms
Cited by: 12
Author(s): Simon Bahrndorff, Aritz Ruiz‐González, Nadieh de Jonge, Jeppe Lund Nielsen, Henrik Skovgård, Cino Pertoldi
Software Mentions: 3
Published: over 6 years ago

10.1038/srep22525

Integrated metabolomics and metagenomics analysis of plasma and urine identified microbial metabolites associated with coronary heart disease
Cited by: 103
Author(s): Qiang Feng, Zhipeng Liu, Shilong Zhong, Ruijun Li, Huihua Xia, Zhuye Jie, Bo Wen, Xiaomin Chen, Wei Yan, Yanqun Fan, Zhenyu Guo, Nan Meng, Jiyan Chen, Yu Xin, Zhiwei Zhang, Karsten Kristiansen, Jun Wang, Xun Xu, Kunlun He, Guanglei Li
Software Mentions: 3
Published: over 10 years ago

10.1038/srep24336

Ectomycorrhizal fungal communities associated with Populus simonii and Pinus tabuliformis in the hilly-gully region of the Loess Plateau, China
Cited by: 30
Author(s): Dongfeng Long, Jianjun Li, Qisheng Han, Xiaobing Wang, Jian Huang
Software Mentions: 3
Published: over 10 years ago

10.1038/srep25712

Habitat heterogeneity and connectivity shape microbial communities in South American peatlands
Cited by: 27
Author(s): Felix Oloo, Ángel Valverde, María Victoria Quiroga, Surendra Vikram, Don A. Cowan, Gabriela Mataloni
Software Mentions: 3
Published: over 10 years ago

10.1038/srep26752

Weight gain in anorexia nervosa does not ameliorate the faecal microbiota, branched chain fatty acid profiles and gastrointestinal complaints
Cited by: 212
Author(s): Isabelle Mack, Ulrich Cuntz, Claudia Grämer, Sabrina Niedermaier, Charlotte Pohl, Andreas Schwiertz, Kurt Zimmermann, Stephan Zipfel, Paul Enck, John Penders
Software Mentions: 3
Published: over 10 years ago

10.1111/acel.12995

Epigenetic signatures of Werner syndrome occur early in life and are distinct from normal epigenetic aging processes
Cited by: 20
Author(s): Anna Maierhofer, Julia Flunkert, Junko Oshima, George M. Martin, Martin Poot, Indrajit Nanda, Marcus Dittrich, Tobias Müller, Thomas Haaf
Software Mentions: 3
Published: about 7 years ago

10.1186/s12864-017-3743-1

Growth and stress response mechanisms underlying post-feeding regenerative organ growth in the Burmese python
Cited by: 30
Author(s): Audra L. Andrew, Blair W. Perry, Daren C. Card, Drew R. Schield, Robert P. Ruggiero, Suzanne E. McGaugh, Amit Choudhary, Stephen M. Secor, Todd A. Castoe
Software Mentions: 3
Published: over 9 years ago

10.1038/srep29168

Landscape determinants of fine-scale genetic structure of a small rodent in a heterogeneous landscape (Hluhluwe-iMfolozi Park, South Africa)
Cited by: 18
Author(s): Isa‐Rita M. Russo, Catherine L. Sole, Mario Barbato, Ullrich von Bramann, Michael William Bruford
Software Mentions: 3
Published: about 10 years ago

10.1038/srep32826

Fecal metabolome of the Hadza hunter-gatherers: a host-microbiome integrative view
Cited by: 64
Author(s): Silvia Turroni, Jessica Fiori, Simone Rampelli, Stephanie L. Schnorr, Clarissa Consolandi, Monica Barone, Elena Biagi, Flaminia Fanelli, Marco Mezzullo, Alyssa N. Crittenden, Amanda G. Henry, Patrizia Brigidi, Marco Candela
Software Mentions: 3
Published: about 10 years ago

10.1038/srep35461

Sex Change in Clownfish: Molecular Insights from Transcriptome Analysis
Cited by: 56
Author(s): Laura Casas, Fran Saborido-Rey, Tae Woo Ryu, Craig Michell, Timothy Ravasi, Xabier Irigoien
Software Mentions: 3
Published: almost 10 years ago

10.18632/aging.103293

Association of gut microbiota composition and function with an aged rat model of senile osteoporosis using 16S rRNA and metagenomic sequencing analysis
Cited by: 25
Author(s): Shaolin Ma, Jinhong Qin, Yongqiang Hao, Lei Fu
Software Mentions: 3
Published: over 6 years ago

10.1038/srep35926

Disentangling the drivers of taxonomic and phylogenetic beta diversities in disturbed and undisturbed subtropical forests
Cited by: 12
Author(s): Jinliang Liu, Hong Qian, Yi Jin, Chuping Wu, Jianhua Chen, Shu Yu, Xiaofeng Wei, Xiao‐Feng Jin, Jiajia Li, Mingjian Yu
Software Mentions: 3
Published: almost 10 years ago