10.3389/fpls.2018.00196

Long-Term Vegetation Dynamics in a Megadiverse Hotspot: The Ice-Age Record of a Pre-montane Forest of Central Ecuador
Cited by: 9
Author(s): Encarni Montoya, Hayley Frances Keen, Carmen Luzuriaga, William D. Gosling
Software Mentions: 3
Published: over 8 years ago

10.3389/fpls.2020.576407

Hybrid Speciation and Introgression Both Underlie the Genetic Structures and Evolutionary Relationships of Three Morphologically Distinct Species of Lilium (Liliaceae) Forming a Hybrid Zone Along an Elevational Gradient
Cited by: 6
Author(s): Yongxing Gao, AJ Harris, Huaicheng Li, Xin‐Fen Gao
Software Mentions: 3
Published: almost 6 years ago

10.1007/s00792-017-0992-5

Changes in bacterial and archaeal communities during the concentration of brine at the graduation towers in Ciechocinek spa (Poland)
Cited by: 12
Author(s): Agnieszka Kalwasińska, Edyta Deja-Sikora, Aleksandra Burkowska‐But, Attila Szabó, Tamás Felföldi, Przemysław Kosobucki, Arkadiusz Krawiec, Maciej Walczak
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-017-11546-w

Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems
Cited by: 17
Author(s): Caitlin Potter, Chris Freeman, Peter N. Golyshin, Gail Ackermann, Nathalie Fenner, James E. McDonald, Abdassalam Ehbair, Timothy G. J. Jones, Loretta M. Murphy, Simon Creer
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-017-11427-2

The salivary microbiome is consistent between subjects and resistant to impacts of short-term hospitalization
Cited by: 29
Author(s): Damien J. Cabral, Jenna I. Wurster, Myrto Eleni Flokas, Michail Alevizakos, Michelle A. Zabat, Benjamin J. Korry, Aislinn D. Rowan, William H. Sano, Nikolaos Andreatos, Robert Ducharme, Philip A. Chan, Eleftherios Mylonakis, Beth Burgwyn Fuchs, Peter Belenky
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0234431

Comparative analysis of viruses in four bee species collected from agricultural, urban, and natural landscapes
Cited by: 10
Author(s): Tuğçe Olgun, Sydney E. Everhart, Troy D. Anderson, Judy Wu‐Smart
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0203962

Re-evaluating the occupation history of Koh Ker, Cambodia, during the Angkor period: A palaeo-ecological approach
Cited by: 8
Author(s): Tegan Hall, Dan Penny, Rebecca Hamilton
Software Mentions: 3
Published: almost 8 years ago

10.3389/fpls.2017.01834

Root and Rhizosphere Bacterial Phosphatase Activity Varies with Tree Species and Soil Phosphorus Availability in Puerto Rico Tropical Forest
Cited by: 50
Author(s): K. G. M. Cabugao, Collin M. Timm, Alyssa A. Carrell, Joanne Childs, Tse-Yuan S. Lu, Dale A. Pelletier, David J. Weston, R. J. Norby
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0228561

Completing Linnaeus’s inventory of the Swedish insect fauna: Only 5,000 species left?
Cited by: 22
Author(s): Fredrik Ronquist, Mattias Forshage, Sibylle Häggqvist, Dave Karlsson, Rasmus Hovmöller, Johannes Bergsten, Kevin C. Holston, Tom Britton, Johan Abenius, B. Andersson, Peter Neerup Buhl, Carl-Cedric Coulianos, Arne Fjellberg, Carl‐Axel Gertsson, Sven Hellqvist, Mathias Jaschhof, Jostein Kjærandsen, Seraina Klopfstein, Sverre Kobro, Andrew D. Liston, Rudolf Meier, Marc A. A. Pollet, Matthias Riedel, Jindřích Roháček, Meike M. Schuppenhauer, Julia Stigenberg, Ingemar Struwe, Taeger Andreas, Sven-Olof Ulefors, Oleksandr Varga, Phil Withers, Ulf Gärdenfors
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2018.01230

Root JA Induction Modifies Glucosinolate Profiles and Increases Subsequent Aboveground Resistance to Herbivore Attack in Cardamine hirsuta
Cited by: 13
Author(s): Moe Bakhtiari, Gaétan Glauser, Sergio Rasmann
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2017.01381

Petroleum Contamination and Plant Identity Influence Soil and Root Microbial Communities While AMF Spores Retrieved from the Same Plants Possess Markedly Different Communities
Cited by: 25
Author(s): Bachir Iffis, Marc St‐Arnaud, Mohamed Hijri
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0132801

Once upon Multivariate Analyses: When They Tell Several Stories about Biological Evolution
Cited by: 16
Author(s): Sabrina Renaud, Anne‐Béatrice Dufour, Emilie A. Hardouin, Ronan Ledevin, Jean‐Christophe Auffray
Software Mentions: 3
Published: about 11 years ago

10.1038/s41598-017-11452-1

Deep-reef fish assemblages of the Great Barrier Reef shelf-break (Australia)
Cited by: 25
Author(s): Tiffany L. Sih, Michael Cappo, Michael J. Kingsford
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-017-10613-6

Metagenomic evidence of stronger effect of stylo (legume) than bahiagrass (grass) on taxonomic and functional profiles of the soil microbial community
Cited by: 15
Author(s): Zhihui Yang, Honghui Zhu, Shenglei Fu, Qing Yao
Software Mentions: 3
Published: about 9 years ago

10.3389/fpls.2016.01345

Rhizospheric Bacterial Community of Endemic Rhododendron arboreum Sm. Ssp. delavayi along Eastern Himalayan Slope in Tawang
Cited by: 12
Author(s): Rajal Debnath, Archana Yadav, Vijai Kumar Gupta, Bhim Pratap Singh, Pratap Jyoti Handique, Ratul Saikia
Software Mentions: 3
Published: about 10 years ago

10.12688/f1000research.16804.4

Do you cov me? Effect of coverage reduction on metagenome shotgun sequencing studies
Cited by: 10
Author(s): Federica Cattonaro, Alessandro Spadotto, Slobodanka Radović, Fabio Marroni
Software Mentions: 3
Published: over 6 years ago

10.1038/ismej.2015.245

Shifts in diversity and function of lake bacterial communities upon glacier retreat
Cited by: 80
Author(s): Hannes Peter, Rubén Sommaruga
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-017-10488-7

Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS
Cited by: 89
Author(s): Anna Maria D’Erchia, Angela Gallo, Caterina Manzari, Susanna Raho, David S. Horner, Matteo Chiara, Alessio Valletti, Italia Aiello, Francesca Mastropasqua, Loredana Ciaccia, Franco Locatelli, Francesco Pisani, Grazia Paola Nicchia, María Svelto, Graziano Pesole, Ernesto Picardi
Software Mentions: 3
Published: about 9 years ago

10.12688/f1000research.13841.1

A comparison of computationally predicted functional metagenomes and microarray analysis for microbial P cycle genes in a unique basalt-soil forest
Cited by: 13
Author(s): Erick S. LeBrun, Sanghoon Kang
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0133487

Assessment of Zooplankton Community Composition along a Depth Profile in the Central Red Sea
Cited by: 28
Author(s): John K. Pearman, Xabier Irigoien
Software Mentions: 3
Published: about 11 years ago

10.1186/s12985-018-0992-9

Geographical distribution and relative risk of Anjozorobe virus (Thailand orthohantavirus) infection in black rats (Rattus rattus) in Madagascar
Cited by: 15
Author(s): Vololoniaina Raharinosy, Marie-Marie Olive, Fehivola Mandanirina Andriamiarimanana, Soa Fy Andriamandimby, Jean-Pierre Ravalohery, Seta Andriamamonjy, Claudia Filippone, Danielle Rakoto, Sandra Telfer, Jean‐Michel Heraud
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-017-07639-1

Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence
Cited by: 47
Author(s): Yannick Colin, Océane Nicolitch, Joy D. Van Nostrand, Jizhong Zhou, M.-P. Turpault, Stéphane Uroz
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0201406

Phenotypic plasticity in specialists: How long-spined larval Sympetrum depressiusculum (Odonata: Libellulidae) responds to combined predator cues
Cited by: 2
Author(s): Hana Šigutová, Martin Šigut, Aleš Dolný
Software Mentions: 3
Published: about 8 years ago

10.12688/f1000research.13996.2

Birds of primary and secondary forest and shrub habitats in the peat swamp of Berbak National Park, Sumatra
Cited by: 4
Author(s): Kevin Darras, Dedi Rahman, Waluyo Sugito, Yeni Mulyani, Dewi M. Prawiradilaga, Agus Rozali, Irfan Fitriawan, Teja Tscharntke
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-017-08850-w

Ecological effects of full and partial protection in the crowded Mediterranean Sea: a regional meta-analysis
Cited by: 119
Author(s): Sylvaine Giakoumi, Claudia Scianna, Jeremiah Grahm Plass-Johnson, Fiorenza Micheli, Kirsten Grorud-Colvert, Pierre Thiriet, Joachim Claudet, G. Di Carlo, Antonio Franco, Steven D. Gaines, José Antonio García-Charton, Jane Lubchenco, Jeffrey J. Reimer, Enric Sala, Paolo Guidetti
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-017-08401-3

Interactions count: plant origin, herbivory and disturbance jointly explain seedling recruitment and community structure
Cited by: 4
Author(s): Lotte Korell, Birgit Lang, Isabell Hensen, Harald Auge, Helge Bruelheide
Software Mentions: 3
Published: about 9 years ago

10.1002/ece3.4390

Local factors associated with on‐host flea distributions on prairie dog colonies
Cited by: 25
Author(s): Robin E. Russell, Rachel C. Abbott, Daniel W. Tripp, Tonie E. Rocke
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2021.639368

Cycad-Weevil Pollination Symbiosis Is Characterized by Rapidly Evolving and Highly Specific Plant-Insect Chemical Communication
Cited by: 7
Author(s): Shayla Salzman, Damon J. Crook, Michael Calonje, Dennis Wm. Stevenson, Naomi E. Pierce, Robin Hopkins
Software Mentions: 3
Published: over 5 years ago

10.12688/f1000research.22035.2

Staphylococcus aureus nasal carriage and microbiome composition among medical students from Colombia: a cross-sectional study
Cited by: 8
Author(s): Niradiz Reyes, Oscar Montes, Stephanie Figueroa, Raj K. Tiwari, Christopher C. Sollecito, Rebecca Emmerich, Mykhaylo Usyk, Jan Geliebter, Robert D. Burk
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-017-06665-3

Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing
Cited by: 152
Author(s): Michael Tessler, Johannes S. Neumann, Ebrahim Afshinnekoo, Michael Pineda, Rebecca Hersch, Luiz Felipe Machado Velho, Bianca Trevizan Segóvia, Fábio Amodêo Lansac‐Tôha, Michael Lemke, Rob DeSalle, Christopher E. Mason, Mercer R. Brugler
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-017-06928-z

Microbial planktonic communities in the Red Sea: high levels of spatial and temporal variability shaped by nutrient availability and turbulence
Cited by: 44
Author(s): John K. Pearman, Joanne I. Ellis, Xabier Irigoien, Y.V.B. Sarma, Burton H. Jones, Susana Carvalho
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0191268

Yearly fluctuations of flower landscape in a Mediterranean scrubland: Consequences for floral resource availability
Cited by: 24
Author(s): Víctor Flo, Jordi Bosch, Xavier Arnán, Clara Primante, Ana M. Martín González, Helena Barril-Graells, Anselm Rodrigo
Software Mentions: 3
Published: over 8 years ago

10.1038/s41396-021-00897-y

Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities
Cited by: 79
Author(s): Christian Santos‐Medellín, Laura Zinke, Anneliek M. ter Horst, Danielle L. Gelardi, Sanjai J. Parikh, Joanne B. Emerson
Software Mentions: 3
Published: over 5 years ago

10.1002/2211-5463.12694

Alterations in the human gut microbiome associated with <i>Helicobacter pylori</i> infection
Cited by: 29
Author(s): Daoming Wang, Yan Li, Zhong Huang, Qiuxia Ding, Yuxiang Lin, Shanmei Tang, Yang Zong, Qi Wang, Xiuqing Zhang, Huanming Yang, Rong Wang, Xiao Liu
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0095703

Different Relationships between Temporal Phylogenetic Turnover and Phylogenetic Similarity and in Two Forests Were Detected by a New Null Model
Cited by: 4
Author(s): Jiayuan Huang, Jian Zhang, Yong Shen, Juyu Lian, Hong‐Lin Cao, Wanhui Ye, Liang Wu, Yue Bin
Software Mentions: 3
Published: over 12 years ago

10.7554/eLife.13720

Benefits of jasmonate-dependent defenses against vertebrate herbivores in nature
Cited by: 36
Author(s): Ricardo A. R. Machado, Mark S. McClure, Maxime Hervé, Ian Thomas Baldwin, Matthias Erb
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0248147

Influence of industry standard feeding frequencies on behavioral patterns and rumen and fecal bacterial communities in Holstein and Jersey cows
Cited by: 5
Author(s): Vanessa M. De La Guardia-Hidrogo, Henry A. Paz
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-87162-6

Limnological response from high-altitude wetlands to the water supply in the Andean Altiplano
Cited by: 2
Author(s): Ignacio García-Sanz, Inger Heine-Fuster, José A. Luque, H. Pizarro, Rodrigo Castillo, Matías Pailahual, Manuel Prieto, Pablo Pérez-Portilla, Adriana Aránguiz-Acuña
Software Mentions: 3
Published: over 5 years ago

10.1007/s00442-017-3921-5

Nitrogen effects on the pelagic food web are modified by dissolved organic carbon
Cited by: 8
Author(s): Anne Deininger, Carolyn Faithfull, Ann‐Kristin Bergström
Software Mentions: 3
Published: about 9 years ago

10.3390/dj7020058

Effect of Dietary Fiber on the Composition of the Murine Dental Microbiome
Cited by: 10
Author(s): Lea M. Sedghi, Craig Byron, Ryan deM. Jennings, George E. Chlipala, Stefan J. Green, Laura Silo-Suh
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2016.02064

Cowpea Nodules Harbor Non-rhizobial Bacterial Communities that Are Shaped by Soil Type Rather than Plant Genotype
Cited by: 76
Author(s): Jakson Leite, Doreen Fischer, Luc Felicianus Marie Rouws, Paulo Ivan Fernandes‐Júnior, Andreas Hofmann, Susanne Kublik, Michael Schloter, Gustavo Ribeiro Xavier, Viviane Radl
Software Mentions: 3
Published: over 9 years ago

10.1002/ece3.7568

Temporal patterns of forest seedling emergence across different disturbance histories
Cited by: 4
Author(s): Elle Bowd, Lachlan McBurney, David Blair, David B. Lindenmayer
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0212120

Molecular fungal community and its decomposition activity in sapwood and heartwood of 13 temperate European tree species
Cited by: 51
Author(s): Sabrina Leonhardt, Björn Hoppe, Elisa Stengel, Lisa Noll, Julia Moll, Claus Bässler, Andreas Dahl, François Buscot, Martin Hofrichter, Harald Kellner
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0148979

The Metagenome of Utricularia gibba's Traps: Into the Microbial Input to a Carnivorous Plant
Cited by: 19
Author(s): Luis David Alcaraz, Shamayim Martínez-Sánchez, Ignacio Torres, Enrique Ibarra-Laclette, Luis Herrera-Estrella
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-017-03476-4

Gut microbiota of liver transplantation recipients
Cited by: 37
Author(s): Li‐Ying Sun, Yunsheng Yang, Wei Qu, Zhi‐Jun Zhu, Wei Lin, Zhi‐Sheng Ye, Jian-Rui Zhang, Xuguo Sun, Zhili Zeng
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0073688

Slipping through the Cracks: Rubber Plantation Is Unsuitable Breeding Habitat for Frogs in Xishuangbanna, China
Cited by: 14
Author(s): Jocelyn E. Behm, Xiaodong Yang, Chen Jin
Software Mentions: 3
Published: about 13 years ago

10.1155/2018/6280484

Bacterial Community of the Rice Floodwater Using Cultivation-Independent Approaches
Cited by: 13
Author(s): Michele Pittol, Erin D. Scully, Daniel N. Miller, Lisa M. Durso, Lídia Mariana Fiuza, Victor Hugo Valiati
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-017-03812-8

Trait choice profoundly affected the ecological conclusions drawn from functional diversity measures
Cited by: 26
Author(s): Lei Zhu, Bojie Fu, He Zhu, Cong Wang, Lixin Jiao, Ji Zhou
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-02845-3

Phylogenomic Insight into Salinispora (Bacteria, Actinobacteria) Species Designations
Cited by: 24
Author(s): Natalie Millán-Aguiñaga, Krystle L. Chavarría, Juan A. Ugalde, Anne Catrin Letzel, Greg W. Rouse, Paul R. Jensen
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-01667-7

The potential use of cuticular hydrocarbons and multivariate analysis to age empty puparial cases of Calliphora vicina and Lucilia sericata
Cited by: 22
Author(s): Hannah E. Moore, Jennifer L. Pechal, M. Eric Benbow, Falko P. Drijfhout
Software Mentions: 3
Published: over 9 years ago

10.1093/femsec/fiaa163

Bacterial community assembly in Atlantic cod larvae (Gadus morhua): contributions of ecological processes and metacommunity structure
Cited by: 19
Author(s): Ragnhild Inderberg Vestrum, Kari J.K. Attramadal, Ôlav Vadstein, Madeleine S. Gundersen, Ingrid Bakke
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2019.01078

Salinity in Autumn-Winter Season and Fruit Quality of Tomato Landraces
Cited by: 24
Author(s): Tommaso Michele Moles, Rita de Brito Francisco, Lorenzo Mariotti, Antonio Pompeiano, Antonio Lupini, Luca Incrocci, Giulia Carmassi, Andrea Scartazza, Laura Pistelli, Lorenzo Guglielminetti, Alberto Pardossi, Francesco Sunseri, Stefan Hörtensteiner, Diana Santelia
Software Mentions: 3
Published: almost 7 years ago

10.3390/v11100903

Red deer (Cervus elaphus) Did Not Play the Role of Maintenance Host for Bluetongue Virus in France: The Burden of Proof by Long-Term Wildlife Monitoring and Culicoides Snapshots
Cited by: 10
Author(s): Sophie Rossi, Thomas Balenghien, Cyril Viarouge, Eva Faure, Gina Zanella, Corinne Sailleau, Bruno Mathieu, Jean Claude Delécolle, Camille Ninio, Claire Garros, Laëtitia Gardès, Christophe Tholoniat, Agnès Ariston, D. Gauthier, Stevan Mondoloni, Aurélie Barboiron, Maryline Pellerin, P. Gibert, Corinne Novella, Stéphane Barbier, Etienne Guillaumat, Stéphan Zientara, Damien Vitour, Emmanuel Bréard
Software Mentions: 3
Published: almost 7 years ago

10.1093/ve/veab005

Virome composition in marine fish revealed by meta-transcriptomics
Cited by: 48
Author(s): Jemma L. Geoghegan, Francesca Di Giallonardo, Michelle Wille, Ayda Susana Ortiz-Báez, Vincenzo A Costa, Timothy M. Ghaly, Jonathon C O Mifsud, Olivia M. H. Turnbull, David R. Bellwood, Jane E. Williamson, Edward C. Holmes
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2020.01028

Bacterial Diversity and Interaction Networks of Agave lechuguilla Rhizosphere Differ Significantly From Bulk Soil in the Oligotrophic Basin of Cuatro Cienegas
Cited by: 19
Author(s): Nguyen E. López-Lozano, Andrea Echeverría Molinar, Elizabeth Alejandra Ortiz Durán, Maribel Hernández-Rosales, Valeria Souza
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2017.01263

Application of Mycorrhiza and Soil from a Permaculture System Improved Phosphorus Acquisition in Naranjilla
Cited by: 13
Author(s): Sarah Symanczik, Michelle Gisler, Cécile Thonar, Klaus Schlaeppi, Marcel van der Heijden, Ansgar Kahmen, Thomas Boller, Paul Mäder
Software Mentions: 3
Published: about 9 years ago

10.1002/mds.27105

The nasal and gut microbiome in Parkinson's disease and idiopathic rapid eye movement sleep behavior disorder
Cited by: 384
Author(s): Anna Heintz‐Buschart, Urvashi Pandey, Tamara Wicke, Friederike Sixel‐Döring, Annette Janzen, Elisabeth Sittig-Wiegand, Claudia Trenkwalder, Wolfgang H. Oertel, Brit Mollenhauer, Paul Wilmes
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-021-86247-6

Carrying asymptomatic gallstones is not associated with changes in intestinal microbiota composition and diversity but cholecystectomy with significant dysbiosis
Cited by: 18
Author(s): Fabian Frost, Tim Kacprowski, Malte Rühlemann, Stefan Weiß, Corinna Bang, André Franke, Maik Pietzner, Ali Aghdassi, Matthias Sendler, Uwe Völker, Henry Völzke, Julia Mayerle, Frank Ulrich Weiß, Georg Homuth, Markus M. Lerch
Software Mentions: 3
Published: over 5 years ago

10.3390/ijerph14010037

Investigation of Indoor Air Quality in Houses of Macedonia
Cited by: 29
Author(s): Silvia Vilčeková, Ilija Zoran Apostoloski, Ľudmila Mečiarová, Eva Krídlová Burdová, Jozef Kiseľák
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-00457-5

Respiratory Microbiome of Endangered Southern Resident Killer Whales and Microbiota of Surrounding Sea Surface Microlayer in the Eastern North Pacific
Cited by: 43
Author(s): Stephen Raverty, Linda D. Rhodes, Erin Zabek, Azad Eshghi, Caroline E. Cameron, M. Bradley Hanson, J. P. Schroeder
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2019.00765

Large Scale Screening of Epichloë Endophytes Infecting Schedonorus pratensis and Other Forage Grasses Reveals a Relation Between Microsatellite-Based Haplotypes and Loline Alkaloid Levels
Cited by: 13
Author(s): Giovanni Cagnano, Niels Roulund, Christian S. Jensen, Flavia Pilar Forte, Torben Asp, Adrian Leuchtmann
Software Mentions: 3
Published: over 7 years ago

10.1007/s00442-018-4294-0

Global patterns in the metacommunity structuring of lake macrophytes: regional variations and driving factors
Cited by: 48
Author(s): Janne Alahuhta, Marja Lindholm, Claudia Petean Bove, Eglantine Chappuis, J. S. Clayton, Mary de Winton, Tõnu Feldmann, Frauke Ecke, Esperança Gacia, Patrick Grillas, Mark V. Hoyer, Lucinda B. Johnson, Agnieszka Kolada, Sarian Kosten, Torben L. Lauridsen, Balázs András Lukács, Marit Mjelde, Roger Paulo Mormul, Laïla Rhazi, Mouhssine Rhazi, Laura Sass, Martin Søndergaard, Jun Xu, Jani Heino
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0078835

Depth-Dependent Differences in Community Structure of the Human Colonic Microbiota in Health
Cited by: 21
Author(s): Aonghus Lavelle, Gráinne Lennon, Neil G. Docherty, Áine Balfe, Hugh Mulcahy, Glen Doherty, Diarmuid O’Donoghue, John Hyland, Fergus Shanahan, Kieran Sheahan, J. Calvin Coffey, Desmond C. Winter, P. R. O’Connell
Software Mentions: 3
Published: almost 13 years ago

10.1016/j.dib.2020.105467

An intensive multilocation temporal dataset of fungal communities in the root and rhizosphere of Brassica napus
Cited by: 3
Author(s): Navid Bazghaleh, Steven D. Mamet, Jennifer K. Bell, Zayda Piedad Morales Moreira, Zelalem M. Taye, Shanay Williams, Melissa M. Arcand, Eric G. Lamb, Steven J. Shirtliffe, Sally Vail, Steven D. Siciliano, Bobbi L. Helgason
Software Mentions: 3
Published: over 6 years ago

10.3390/v11090792

Metagenomic Analysis of Virus Diversity and Relative Abundance in a Eutrophic Freshwater Harbour
Cited by: 20
Author(s): Christine N. Palermo, Roberta R. Fulthorpe, Rosemary Saati, Steven M. Short
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-021-85516-8

First description of deep benthic habitats and communities of oceanic islands and seamounts of the Nazca Desventuradas Marine Park, Chile
Cited by: 10
Author(s): Jan M. Tapia-Guerra, Ariadna Mechó, Erin E. Easton, María de los Ángeles Gallardo, Matthias Gorny, Javier Sellanes
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-85482-1

Benchmarking DNA isolation kits used in analyses of the urinary microbiome
Cited by: 14
Author(s): Lisa Karstens, Nazema Y. Siddiqui, Tamara Zaza, Alecsander Barstad, Cindy L. Amundsen, Tatyana A. Sysoeva
Software Mentions: 3
Published: over 5 years ago

10.1093/femsec/fiab022

Soil depth matters: shift in composition and inter-kingdom co-occurrence patterns of microorganisms in forest soils
Cited by: 39
Author(s): Sunil Mundra, O. Janne Kjønaas, Luis Morgado, Anders K. Krabberød, Yngvild Ransedokken, Håvard Kauserud
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0112763

Bacterial Endophytic Communities in the Grapevine Depend on Pest Management
Cited by: 101
Author(s): A. Campisano, Livio Antonielli, Michael Pancher, Sohail Yousaf, Massimo Pindo, I. Pertot
Software Mentions: 3
Published: almost 12 years ago

10.3390/ijerph15040708

Abundances of Clinically Relevant Antibiotic Resistance Genes and Bacterial Community Diversity in the Weihe River, China
Cited by: 29
Author(s): Xiaojuan Wang, Jie Gu, Hua Gao, Xiaoqing Qian, Haichao Li
Software Mentions: 3
Published: over 8 years ago

10.1016/j.dib.2020.106143

An intensive multilocation temporal dataset of fungal and bacterial communities in the root and rhizosphere of Brassica napus
Cited by: 4
Author(s): Navid Bazghaleh, Jennifer K. Bell, Steven D. Mamet, Zayda Piedad Morales Moreira, Zelalem M. Taye, Shanay Williams, Charlotte E. Norris, Tanner Dowhy, Melissa M. Arcand, Eric G. Lamb, Matthew G. Links, Steven J. Shirtliffe, Sally Vail, Steven D. Siciliano, Bobbi L. Helgason
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-021-85281-8

Characterization of the microbial communities in wheat tissues and rhizosphere soil caused by dwarf bunt of wheat
Cited by: 13
Author(s): Tongshuo Xu, Wenli Jiang, Dandan Qin, Taiguo Liu, Zhang Jian-min, Wanquan Chen, Li Gao
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-84422-3

Nitrogen addition decreases methane uptake caused by methanotroph and methanogen imbalances in a Moso bamboo forest
Cited by: 14
Author(s): Quan Li, Changhui Peng, Junbo Zhang, Yongfu Li, Xinzhang Song
Software Mentions: 3
Published: over 5 years ago

10.1111/1462-2920.15232

Putative degraders of low‐density polyethylene‐derived compounds are ubiquitous members of plastic‐associated bacterial communities in the marine environment
Cited by: 14
Author(s): Maria Pinto, Paula Polania Zenner, Teresa M. Langer, Jesse Patrick Harrison, Meinhard Simon, Marta M. Varela, Gerhard J. Herndl
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0054818

Organic Farming Favours Insect-Pollinated over Non-Insect Pollinated Forbs in Meadows and Wheat Fields
Cited by: 31
Author(s): Péter Batáry, Laura M. E. Sutcliffe, Carsten F. Dormann, Teja Tscharntke
Software Mentions: 3
Published: over 13 years ago

10.3389/fmicb.2019.00975

Long-Term Temperature Stress in the Coral Model Aiptasia Supports the “Anna Karenina Principle” for Bacterial Microbiomes
Cited by: 37
Author(s): Hanin Ibrahim Ahmed, Marcela Herrera, Yi Jin Liew, Manuel Aranda
Software Mentions: 3
Published: over 7 years ago

10.1111/1462-2920.14882

Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil‐borne pathogen
Cited by: 33
Author(s): S. Emilia Hannula, Hui Ma, Juan E. Pérez‐Jaramillo, Ana Pineda, T. Martijn Bezemer
Software Mentions: 3
Published: almost 7 years ago

10.1002/ece3.7744

Climate‐driven elevational variation in range sizes of vascular plants in the central Himalayas: A supporting case for Rapoport's rule
Cited by: 2
Author(s): Jiankun Liang, Huijian Hu, Zhifeng Ding, Ganwen Lie, Zhixin Zhou, Paras B. Singh, Zhixiang Zhang, Shengnan Ji
Software Mentions: 3
Published: about 5 years ago

10.1111/1462-2920.15546

A novel methoxydotrophic metabolism discovered in the hyperthermophilic archaeon <i>Archaeoglobus fulgidus</i>
Cited by: 9
Author(s): Cornelia U. Welte, R.M. de Graaf, Paula Dalcin Martins, Robert S. Jansen, Mike S. M. Jetten, Julia M. Kurth
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-84969-1

Investigating the microbial ecology of coastal hotspots of marine nitrogen fixation in the western North Atlantic
Cited by: 4
Author(s): Seaver Wang, Wanhu Tang, Erwan Delage, Scott M. Gifford, Hannah Whitby, Aridane G. González, Damien Eveillard, Hélène Planquette, Nicolas Cassar
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.1953

Decoupled genomic elements and the evolution of partner quality in nitrogen‐fixing rhizobia
Cited by: 13
Author(s): Benjamin R. Gordon, Christie R. Klinger, Dylan J. Weese, Jennifer A. Lau, Patricia V. Burke, Bryn T. M. Dentinger, Katy D. Heath
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0064315

Intestinal Microbiota in Healthy U.S. Young Children and Adults—A High Throughput Microarray Analysis
Cited by: 179
Author(s): Tamar Ringel–Kulka, Jing Cheng, Yehuda Ringel, Jarkko Salojärvi, Ian M. Carroll, Airi Palva, Willem M. de Vos, Reetta Satokari
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0076382

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees
Cited by: 224
Author(s): Migun Shakya, Neil Gottel, Hector F. Castro, Zamin K. Yang, Lee E. Gunter, Jessy Labbé, Wellington Muchero, Gregory Bonito, Rytas Vilgalys, Gerald A. Tuskan, Mircea Podar, Christopher W. Schadt
Software Mentions: 3
Published: almost 13 years ago

10.1002/ece3.6294

Manipulating the strength of organism–environment feedback increases nonlinearity and apparent hysteresis of ecosystem response to environmental change
Cited by: 4
Author(s): Aurélie Garnier, Florence D. Hulot, Owen L. Petchey
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-84928-w

Gut microbiota markers associated with obesity and overweight in Italian adults
Cited by: 132
Author(s): Vanessa Palmas, Silvia Pisanu, Veronica Madau, Emanuela Casula, Andrea Deledda, Roberto Cusano, Paolo Uva, Sarah Vascellari, Andrea Loviselli, Aldo Manzin, Fernanda Velluzzi
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.2784

The effect of top-predator presence and phenotype on aquatic microbial communities
Cited by: 9
Author(s): Karen E. Sullam, Blake Matthews, Thierry Aebischer, Ole Seehausen, Helmut Bürgmann
Software Mentions: 3
Published: over 9 years ago

10.7554/eLife.50240

Adjusting for age improves identification of gut microbiome alterations in multiple diseases
Cited by: 100
Author(s): Tarini Shankar Ghosh, Mrinmoy Das, Ian B. Jeffery, Paul W. O’Toole
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.2849

Elements of metacommunity structure in Amazonian Zygoptera among streams under different spatial scales and environmental conditions
Cited by: 41
Author(s): Leandro Schlemmer Brasil, Thiago Bernardi Vieira, José Max Barbosa de Oliveira, Karina Dias-Silva, Leandro Juen
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0223294

Distinctive tasks of different cyanobacteria and associated bacteria in carbon as well as nitrogen fixation and cycling in a late stage Baltic Sea bloom
Cited by: 13
Author(s): Falk Eigemann, Angela Vogts, Maren Voß, Luca Zoccarato, Heide N. Schulz-Vogt
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0118710

Multiple-Geographic-Scale Genetic Structure of Two Mangrove Tree Species: The Roles of Mating System, Hybridization, Limited Dispersal and Extrinsic Factors
Cited by: 61
Author(s): Gustavo Maruyama Mori, Maria Imaculada Zucchi, Anete Pereira de Souza
Software Mentions: 3
Published: over 11 years ago

10.1186/s40793-021-00383-0

Changes in the root-associated bacteria of sorghum are driven by the combined effects of salt and sorghum development
Cited by: 17
Author(s): Yukun Gao, Jianghui Cui, Ge Ren, Wei Shilin, Yang Puyuan, Congpei Yin, Liang Hongkai, Chang Jin-hua
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-83783-z

The pelvic flexure separates distinct microbial communities in the equine hindgut
Cited by: 1
Author(s): Kailee J. Reed, I.G.Z. Kunz, J.A. Scare, Martin K. Nielsen, Philip Turk, Robert J. Coleman, S. J. Coleman
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-83597-z

Potential impacts of marine urbanization on benthic macrofaunal diversity
Cited by: 22
Author(s): Kyosuke Momota, Shinya Hosokawa
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.631882

Crop Rotation With Cress Increases Cucumber Yields by Regulating the Composition of the Rhizosphere Soil Microbial Community
Cited by: 18
Author(s): Xiaoya Gong, Jie Shi, Xingang Zhou, Tao Yuan, Danmei Gao, Fengzhi Wu
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0187575

Fungal communities in ancient peatlands developed from different periods in the Sanjiang Plain, China
Cited by: 17
Author(s): Zhenqing Zhang, Xue Zhou, Lei Tian, Lina Ma, Shasha Luo, Jianfeng Zhang, Xiujun Li, Chunjie Tian
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2020.618144

Organic Acids as Alternatives for Antibiotic Growth Promoters Alter the Intestinal Structure and Microbiota and Improve the Growth Performance in Broilers
Cited by: 37
Author(s): Dong Dai, Kai Qiu, Haijun Zhang, Shu‐geng Wu, Yanming Han, Yuanyuan Wu, Guang‐hai Qi, Jing Wang
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.7482

Niche theory‐based modeling of assembly processes of viral communities in bats
Cited by: 0
Author(s): Fabiola Nieto‐Rabiela, Óscar Rico-Chávez, Gerardo Suzán, Christopher R. Stephens
Software Mentions: 3
Published: over 5 years ago

10.1186/s40793-019-0347-1

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples
Cited by: 58
Author(s): Hyun S. Gweon, Liam P. Shaw, Jeremy Swann, Nicola De Maio, Manal AbuOun, René Niehus, Alasdair T. M. Hubbard, Michael J. Bowes, Mark Bailey, Tim Peto, Sarah Hoosdally, A Sarah Walker, Robert Sebra, Derrick W. Crook, Muna F. Anjum, Daniel S. Read, Nicole Stoesser
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2019.02655

Soil Property and Plant Diversity Determine Bacterial Turnover and Network Interactions in a Typical Arid Inland River Basin, Northwest China
Cited by: 12
Author(s): Wenjuan Wang, Jianming Wang, Ziqi Ye, Tianhan Zhang, Laiye Qu, Jingwen Li
Software Mentions: 3
Published: almost 7 years ago

10.1007/s00572-017-0788-6

Root-associated fungal communities in three Pyroleae species and their mycobiont sharing with surrounding trees in subalpine coniferous forests on Mount Fuji, Japan
Cited by: 4
Author(s): Shuzheng Jia, Takashi Nakano, Masahira Hattori, Kazuhide Nara
Software Mentions: 3
Published: about 9 years ago