cran: vegan | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0237397

Spatial heterogeneity of coral reef benthic communities in Kenya
Cited by: 5
Author(s): Juliet Karisa, David Obura, Chaolun Allen Chen
Software Mentions: 4
Published: about 6 years ago

Megafaunal variation in the abyssal landscape of the Clarion Clipperton Zone
Cited by: 71
Author(s): Erik Simon-Lledó, Brian J. Bett, Veerle A.I. Huvenne, Timm Schoening, Noëlie M.A. Benoist, Rachel M. Jeffreys, Jennifer M. Durden, Daniel O. B. Jones
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0217154

Spatial incongruence in the species richness and functional diversity of cricetid rodents
Cited by: 15
Author(s): Cintia Natalia Martín-Regalado, Miguel Briones‐Salas, Mario C. Lavariega, Claudia E. Moreno
Software Mentions: 4
Published: over 7 years ago

10.1073/pnas.2001337117

Natural selection maintains species despite frequent hybridization in the desert shrub Encelia
Cited by: 21
Author(s): Christopher Todd DiVittorio, Sonal Singhal, Adam B. Roddy, Felipe Zapata, David D. Ackerly, Bruce G. Baldwin, Craig R. Brodersen, Alberto Búrquez, Paul V. A. Fine, Mayra Padilla Flores, Elizabeth Solis, Jaime Morales-Villavicencio, David Morales-Arce, Donald W. Kyhos
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0243748

Diversity and functional prediction of microbial communities involved in the first aerobic bioreactor of coking wastewater treatment system
Cited by: 14
Author(s): Jinsi Deng, Baoshan Zhang, Junting Xie, Haixia Wu, Zemin Li, Guanglei Qiu, Chaohai Wei, Shuang Zhu
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41398-020-01073-0

Enduring neurobehavioral effects induced by microbiota depletion during the adolescent period
Cited by: 35
Author(s): Gilliard Lach, Christine Fülling, Thomaz F.S. Bastiaanssen, Fiona Fouhy, Aoife Donovan, Ana Paula Ventura-Silva, Catherine Stanton, Timothy G. Dinan, John F. Cryan
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0232437

In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations
Cited by: 3
Author(s): Regina L. Wilpiszeski, Caitlin M. Gionfriddo, Ann M. Wymore, Ji Won Moon, Kenneth A. Lowe, Mircea Podar, Sa’ad Rafie, Matthew W. Fields, Terry C. Hazen, Xiaoxuan Ge, Farris L. Poole, Michael W. W. Adams, Romy Chakraborty, Yuhang Fan, Joy D. Van Nostrand, Jizhong Zhou, Adam P. Arkin, Dwayne A. Elias
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0229745

Changes in the gut microbiota of mice orally exposed to methylimidazolium ionic liquids
Cited by: 9
Author(s): Gregory R. Young, Tarek M. Abdelghany, Alistair C. Leitch, Michael Dunn, Peter G. Blain, Clare Lanyon, Matthew C. Wright
Software Mentions: 4
Published: over 6 years ago

10.1186/s12870-014-0276-5

Populus tremula (European aspen) shows no evidence of sexual dimorphism
Cited by: 46
Author(s): Kathryn M. Robinson, Nicolas Delhomme, Niklas Mähler, Bastian Schiffthaler, Jenny Önskog, Benedicte Riber Albrectsen, Pär K. Ingvarsson, Torgeir R. Hvidsten, Stefan Jansson, Nathaniel R. Street
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0187044

Rapid regrowth and detection of microbial contaminants in equine fecal microbiome samples
Cited by: 19
Author(s): Kalie F. Beckers, Christopher Schulz, Gary W. Childers
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0101499

Functional Changes in Littoral Macroinvertebrate Communities in Response to Watershed-Level Anthropogenic Stress
Cited by: 19
Author(s): Katya E. Kovalenko, Valerie Brady, Jan J. H. Ciborowski, S. Ilyushkin, Lucinda B. Johnson
Software Mentions: 4
Published: about 12 years ago

10.1098/rspb.2020.1070

Phylogenetic and functional distinctiveness explain alien plant population responses to competition
Cited by: 10
Author(s): Sam Levin, Raelene M. Crandall, Tyler Pokoski, Cláudia Stein, Tiffany M. Knight
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0076070

Lineage-Specific Responses of Tooth Shape in Murine Rodents (Murinae, Rodentia) to Late Miocene Dietary Change in the Siwaliks of Pakistan
Cited by: 24
Author(s): Yuri Kimura, Louis L. Jacobs, Lawrence J. Flynn
Software Mentions: 4
Published: almost 13 years ago

10.1038/s42003-021-01820-z

The gut mycobiome of healthy mice is shaped by the environment and correlates with metabolic outcomes in response to diet
Cited by: 50
Author(s): Tahliyah S. Mims, Qusai Al Abdallah, James Monroe Stewart, Sydney Watts, Catrina T. White, Thomas Rousselle, Ankush Gosain, Amandeep Bajwa, Joan C. Han, Kent A. Willis, Joseph F. Pierre
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-020-01562-4

Shifts in honeybee foraging reveal historical changes in floral resources
Cited by: 27
Author(s): Laura Jones, Georgina Brennan, Abigail Lowe, Simon Creer, Col R. Ford, Natasha de Vere
Software Mentions: 4
Published: over 5 years ago

10.1098/rspb.2014.2934

The forgotten flies: the importance of non-syrphid Diptera as pollinators
Cited by: 156
Author(s): Katherine A. Orford, Ian P. Vaughan, Jane Memmott
Software Mentions: 4
Published: over 11 years ago

10.1093/conphys/coaa040

A novel bioaugmentation technique effectively increases the skin-associated microbial diversity of captive eastern hellbenders
Cited by: 3
Author(s): Erin K. Kenison, Obed Hernández‐Gómez, Rod N. Williams
Software Mentions: 4
Published: over 6 years ago

10.1093/cdn/nzaa165

Pomegranate Metabolites Impact Tryptophan Metabolism in Humans and Mice
Cited by: 10
Author(s): Jieping Yang, Yuanqiang Guo, Ru-Po Lee, Susanne M. Henning, Jing Wang, Yajing Pan, Tianyu Qing, Mark Hsu, Alex Nguyen, Prabha Siddarth, Rashi Ojha, Gary W. Small, David Heber, Zhaoping Li
Software Mentions: 4
Published: almost 6 years ago

10.1186/1746-6148-9-58

Impact of genetic variation and geographic distribution of porcine reproductive and respiratory syndrome virus on infectivity and pig growth
Cited by: 7
Author(s): Bouabid Badaoui, Roberto Grande, Stefano Calza, María C. Cecere, M. Luini, Alessandra Stella, Sara Botti
Software Mentions: 4
Published: over 13 years ago

10.3390/diagnostics11091622

Alteration in Nasopharyngeal Microbiota Profile in Aged Patients with COVID-19
Cited by: 9
Author(s): Ravindra Kolhe, Nikhil Sahajpal, Sagar Vyavahare, Akhilesh S. Dhanani, Satish Adusumilli, Sudha Ananth, Ashis Mondal, Gregory Taylor Patterson, Sandeep Kumar, Amyn M. Rojiani, Carlos M. Isales, Sadanand Fulzele
Software Mentions: 4
Published: about 5 years ago

10.1186/s12917-018-1691-x

An intensive milk replacer feeding program benefits immune response and intestinal microbiota of lambs during weaning
Cited by: 17
Author(s): Qian Zhang, Chong Li, Xiaolin Niu, Zhian Zhang, Fadi Li, Fēi Li
Software Mentions: 4
Published: almost 8 years ago

10.15252/emmm.201707882

Household triclosan and triclocarban effects on the infant and maternal microbiome
Cited by: 67
Author(s): Jessica V. Ribado, Catherine Ley, Thomas D. Haggerty, Е. И. Ткаченко, Ami S. Bhatt, Julie Parsonnet
Software Mentions: 4
Published: almost 9 years ago

10.1002/eap.2089

Local‐ and landscape‐scale variables shape insect diversity in an urban biodiversity hot spot
Cited by: 36
Author(s): Benjamin J. Adams, Enjie Li, Christine A. Bahlai, Emily K. Meineke, Terrence P. McGlynn, Brian V. Brown
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.ppat.1008671

Single cell heterogeneity in influenza A virus gene expression shapes the innate antiviral response to infection
Cited by: 44
Author(s): Jiayi Sun, J. Cristobal Vera, Jenny Drnevich, Yen Ting Lin, Ruian Ke, Christopher B. Brooke
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.4421

Sex-specific prey partitioning in breeding piscivorous birds examined via a novel, noninvasive approach
Cited by: 10
Author(s): Bettina Thalinger, Johannes Oehm, Christiane Zeisler, Julia Vorhauser, Michael Traugott
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.2863

A gradient of nutrient enrichment reveals nonlinear impacts of fertilization on Arctic plant diversity and ecosystem function
Cited by: 21
Author(s): Case M. Prager, Shahid Naeem, Natalie T. Boelman, Jan U. H. Eitel, Heather E. Greaves, Mary A. Heskel, Troy S. Magney, Duncan N. L. Menge, Lee A. Vierling, Kevin L. Griffin
Software Mentions: 4
Published: over 9 years ago

10.1002/ece3.7916

Testing the relationship between intraspecific competition and individual specialization across both behavior and diet
Cited by: 3
Author(s): Amaryllis K. Adey, Eric R. Larson
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.ppat.1008236

The cervicovaginal mucus barrier to HIV-1 is diminished in bacterial vaginosis
Cited by: 45
Author(s): Thuy Hoang, Emily Toler, Kevin DeLong, Nomfuneko A. Mafunda, Seth M. Bloom, Hannah C. Zierden, Thomas R. Moench, Jenell S. Coleman, Justin Hanes, Douglas S. Kwon, Samuel K. Lai, Richard A. Cone, Laura M. Ensign
Software Mentions: 4
Published: over 6 years ago

10.3390/toxins13010025

Can Cyanobacterial Diversity in the Source Predict the Diversity in Sludge and the Risk of Toxin Release in a Drinking Water Treatment Plant?
Cited by: 16
Author(s): Farhad Jalili, Hana Trigui, Juan Maldonado, Sarah Dorner, Arash Zamyadi, Ben Shapiro, Yves Terrat, Nathalie Fortin, Sébastien Sauvé, Michèle Prévost
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.ppat.1008066

Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures
Cited by: 25
Author(s): Soo Ching Lee, Mei Tang, Alice V. Easton, Joseph C. Devlin, Ling Ling Chua, Ilseung Cho, Foong Ming Moy, Tsung Fei Khang, Yvonne Ai Lian Lim, P’ng Loke
Software Mentions: 4
Published: almost 7 years ago

10.1093/jxb/erx405

Novel computed tomography-based tools reliably quantify plant reproductive investment
Cited by: 34
Author(s): Yannick M. Staedler, Thomas Kreisberger, Sara Manafzadeh, Marion Chartier, Stephan Handschuh, Susanne Pamperl, Susanne Sontag, Ovidiu Paun, Jürg Schönenberger
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.4742

Assessing eukaryotic biodiversity in the Florida Keys National Marine Sanctuary through environmental DNA metabarcoding
Cited by: 45
Author(s): Natalie A. Sawaya, Anni Djurhuus, Collin J. Closek, Megan Hepner, Emily Olesin, Lindsey A. Visser, Christopher R. Kelble, Katherine A. Hubbard, Mya Breitbart
Software Mentions: 4
Published: over 7 years ago

10.1186/s13002-020-00398-w

Invisible contaminants and food security in former coal mining areas of Santa Catarina, Southern Brazil
Cited by: 4
Author(s): Graziela Dias Blanco, Rafael Barbizan Sühs, Escarlet Brizola, Patrícia Figueiredo Corrêa, Mari Lúcia Campos, Natália Hanazaki
Software Mentions: 4
Published: about 6 years ago

10.1016/j.baae.2020.09.009

Nutrient status not secondary metabolites drives herbivory and pathogen infestation across differently mycorrhized tree monocultures and mixtures
Cited by: 5
Author(s): Olga Ferlian, Esther-Marie Lintzel, Helge Bruelheide, Carlos A. Guerra, Heike Heklau, Stephanie D. Jurburg, Paul Kühn, Ainhoa Martínez‐Medina, Sybille B. Unsicker, Nico Eisenhauer, Martin Schädler
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.6529

In the foothill zone—Sabanejewia balcanica(Karaman 1922), in the lowland zone—Sabanejewia bulgarica(Drensky, 1928): Myth or reality?
Cited by: 6
Author(s): Peter Križek, Jan Mendel, Jakub Fedorčák, Ján Koščo
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.3288

Marine dock pilings foster diverse, native cryptobenthic fish assemblages across bioregions
Cited by: 20
Author(s): Simon J. Brandl, Jordan M. Casey, Nancy Knowlton, J. Emmett Duffy
Software Mentions: 4
Published: about 9 years ago

10.3390/toxins12100659

Gradual and Discrete Ontogenetic Shifts in Rattlesnake Venom Composition and Assessment of Hormonal and Ecological Correlates
Cited by: 4
Author(s): Richard B Schonour, Emma M. Huff, Matthew L. Holding, Natalie M. Claunch, Schyler A. Ellsworth, Michael Hogan, Kenneth P. Wray, James J. McGivern, Mark J. Margres, Timothy J. Colston, Darin R. Rokyta
Software Mentions: 4
Published: almost 6 years ago

10.1002/ece3.3797

Sea ice meiofauna distribution on local to pan‐Arctic scales
Cited by: 24
Author(s): Bodil A. Bluhm, Haakon Hop, Mikko Vihtakari, Rolf Gradinger, Katrin Iken, I. A. Melnikov, Janne E. Søreide
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.5575

Protection from illegal fishing and shark recovery restructures mesopredatory fish communities on a coral reef
Cited by: 18
Author(s): Conrad W. Speed, Matthew J. Rees, Katherine Cure, Brigit I. Vaughan, Mark G. Meekan
Software Mentions: 4
Published: about 7 years ago

10.1002/ece3.3613

The roles of environment, space, and phylogeny in determining functional dispersion of rodents (Rodentia) in the Hengduan Mountains, China
Cited by: 18
Author(s): Yuanbao Du, Zhixin Wen, Jinlong Zhang, Xue Lv, Jilong Cheng, Deyan Ge, Lin Xia, Qisen Yang
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0222272

Mortality, perception, and scale: Understanding how predation shapes space use in a wild prey population
Cited by: 6
Author(s): Lindsey N. Messinger, Erica F. Stuber, Christopher J. Chizinski, Joseph J. Fontaine
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2019.00599

Microbiota of the Gut-Lymph Node Axis: Depletion of Mucosa-Associated Segmented Filamentous Bacteria and Enrichment of Methanobrevibacter by Colistin Sulfate and Linco-Spectin in Pigs
Cited by: 11
Author(s): Benjamin Zwirzitz, Beate Pinior, Barbara U. Metzler‐Zebeli, Monika Handler, Kristina Gense, Christian Knecht, Andrea Ladinig, Monika Dzieciol, Stefanie U. Wetzels, Martin Wagner, Stephan Schmitz‐Esser, Evelyne Mann
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0047722

Beyond Streptococcus mutans: Dental Caries Onset Linked to Multiple Species by 16S rRNA Community Analysis
Cited by: 378
Author(s): Erin L. Gross, Clifford J. Beall, Stacey R. Kutsch, Noah D. Firestone, Eugene J. Leys, Ann L. Griffen
Software Mentions: 4
Published: almost 14 years ago

10.1038/s41598-020-69925-9

Comparative assessment of genetic diversity matrices and clustering methods in white Guinea yam (Dioscorea rotundata) based on morphological and molecular markers
Cited by: 27
Author(s): Kwabena Darkwa, Paterne A. Agre, Bunmi Olasanmi, Kazuo Iseki, Ryo Matsumoto, Adrian F. Powell, Guillaume Bauchet, David De Koeyer, Satoru Muranaka, Patrick Adebola, Robert Asiedu, Ryohei Terauchi, Asrat Asfaw
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0199132

Effects of low dose silver nanoparticle treatment on the structure and community composition of bacterial freshwater biofilms
Cited by: 23
Author(s): Alexandra Grün, Constantin Benjamin App, Andreas Breidenbach, Jutta Meier, George Metreveli, Gabriele E. Schaumann, Werner Manz
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2019.00994

Bacterial Community Diversity and Screening of Growth-Affecting Bacteria From Isochrysis galbana Following Antibiotic Treatment
Cited by: 7
Author(s): Jiasheng Cao, Z.-P. Kong, Yufan Zhang, Ting Ling, Jilin Xu, Kai Liao, Chengxu Zhou, Xiaojun Yan
Software Mentions: 4
Published: over 7 years ago

10.1186/s13059-020-02007-1

Influenza infection elicits an expansion of gut population of endogenous Bifidobacterium animalis which protects mice against infection
Cited by: 62
Author(s): Qiang Zhang, Jin Hu, Jia-Wu Feng, Xiaoru Hu, Wang Ting, Wenxiao Gong, Kun Huang, Yi-Xiong Guo, Zhong Zou, Xian Lin, Run Zhou, Yuqi Yuan, Anding Zhang, Hong Wei, Gang Cao, Chen Liu, Lingling Chen, Meilin Jin
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2017.02269

Bacterial Succession on Sinking Particles in the Ocean's Interior
Cited by: 40
Author(s): Erik A. Pelve, Kristina M. Fontanez, Edward F. DeLong
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmicb.2017.00991

Multigenerational Influences of the Fut2 Gene on the Dynamics of the Gut Microbiota in Mice
Cited by: 16
Author(s): Philipp Rausch, Sven Künzel, Abdulhadi Suwandi, Guntram A. Grassl, Philip Rosenstiel, John F. Baines
Software Mentions: 4
Published: over 9 years ago

10.1111/eva.12176

New host and lineage diversity of avian haemosporidia in the northern Andes
Cited by: 52
Author(s): Ryan J. Harrigan, Raúl Ernesto Sedano-Cruz, Anthony Chasar, Jaime A. Chaves, Jennifer T. Nguyen, Alexis Whitaker, Thomas B. Smith
Software Mentions: 4
Published: about 12 years ago

10.3389/fmicb.2020.00158

Distinct Assembly Mechanisms Underlie Similar Biogeographic Patterns of Rare and Abundant Bacterioplankton in Cascade Reservoirs of a Large River
Cited by: 31
Author(s): Carlos Juan, Peifang Wang, Chao Wang, Xun Wang, Lingzhan Miao, Sheng Liu, Qiusheng Yuan, Shenghao Sun
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0231838

Crewmember microbiome may influence microbial composition of ISS habitable surfaces
Cited by: 47
Author(s): Aram Avila-Herrera, James B. Thissen, Camilla Urbaniak, Nicholas A. Be, David J. Smith, Fathi Karouia, Satish K. Mehta, Kasthuri Venkateswaran, Crystal Jaing
Software Mentions: 4
Published: over 6 years ago

10.1128/mBio.00916-18

Novel Autotrophic Organisms Contribute Significantly to the Internal Carbon Cycling Potential of a Boreal Lake
Cited by: 13
Author(s): Sari Peura, Moritz Buck, Sanni L. Aalto, Sergio E. Morales, Hannu Nykänen, Alexander Eiler
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2018.00809

Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community Structure
Cited by: 12
Author(s): Rachel Kaminsky, Sergio E. Morales
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2020.01721

Alpine Snow Algae Microbiome Diversity in the Coast Range of British Columbia
Cited by: 19
Author(s): Kurt M. Yakimovich, Casey B. Engstrom, Lynne M. Quarmby
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2021.636986

Metabolic Potential, Ecology and Presence of Associated Bacteria Is Reflected in Genomic Diversity of Mucoromycotina
Cited by: 10
Author(s): Anna Muszewska, Alicja Okrasińska, Kamil Steczkiewicz, Olga Drgas, Małgorzata Orłowska, Urszula Perlińska-Lenart, Tamara Aleksandrzak‐Piekarczyk, Katarzyna Szatraj, Urszula Zielenkiewicz, Sebastian Piłsyk, Ewa Malc, Piotr A. Mieczkowski, Joanna S. Kruszewska, Przemysław Bernat, Julia Pawłowska
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.01740

Abundant Taxa and Favorable Pathways in the Microbiome of Soda-Saline Lakes in Inner Mongolia
Cited by: 20
Author(s): Dahe Zhao, Shengjie Zhang, Qiong Xue, Junyu Chen, Jian Zhou, Feiyue Cheng, Ming Li, Yaxin Zhu, Haiying Yu, Songnian Hu, Yanning Zheng, Shuang‐Jiang Liu, Hua Xiang
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2018.00297

Linking Associations of Rare Low-Abundance Species to Their Environments by Association Networks
Cited by: 10
Author(s): Tatiana V. Karpinets, Vancheswaran Gopalakrishnan, Jennifer A. Wargo, Andrew Futreal, Christopher W. Schadt, Jianhua Zhang
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-69602-x

Respiratory microbiota of humpback whales may be reduced in diversity and richness the longer they fast
Cited by: 6
Author(s): Catharina Vendl, Eve Slavich, Bernd Wemheuer, Tiffanie M. Nelson, Belinda C. Ferrari, Torsten Thomas, Tracey L. Rogers
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2019.01988

Evaluation of the Nasopharyngeal Microbiota in Beef Cattle Transported to a Feedlot, With a Focus on Lactic Acid-Producing Bacteria
Cited by: 20
Author(s): Samat Amat, Devin B. Holman, Edouard Timsit, Timothy Schwinghamer, Trevor W. Alexander
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2018.00543

High Variability in Cellular Stoichiometry of Carbon, Nitrogen, and Phosphorus Within Classes of Marine Eukaryotic Phytoplankton Under Sufficient Nutrient Conditions
Cited by: 56
Author(s): Nathan S. Garcia, J. Sexton, Tracey Riggins, Jeff Brown, Michael W. Lomas, Adam C. Martiny
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0184062

An empirical, hierarchical typology of tree species assemblages for assessing forest dynamics under global change scenarios
Cited by: 10
Author(s): Jennifer K. Costanza, John W. Coulston, David N. Wear
Software Mentions: 4
Published: about 9 years ago

10.3390/genes10100823

Dissecting the Genome-Wide Evolution and Function of R2R3-MYB Transcription Factor Family in Rosa chinensis
Cited by: 13
Author(s): Yu Han, Jiayao Yu, Tao Zhao, Tangren Cheng, Jia Wang, Weiru Yang, Huitang Pan, Qixiang Zhang
Software Mentions: 4
Published: almost 7 years ago

10.1128/mSystems.00003-16

Differential Functional Constraints Cause Strain-Level Endemism in Polynucleobacter Populations
Cited by: 18
Author(s): Naseer Sangwan, Iratxe Zarraonaindia, Jarrad Hampton-Marcell, Herbert Ssegane, Tifani W. Eshoo, Geeta Rijal, M. Cristina Negri, Jack A. Gilbert
Software Mentions: 4
Published: about 10 years ago

10.1038/s41598-020-62574-y

Changes in Reef Fish Community Structure Following the Deepwater Horizon Oil Spill
Cited by: 19
Author(s): Justin P. Lewis, Joseph H. Tarnecki, Steven B. Garner, David Chagaris, William F. Patterson
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.5333

Historical connections among river basins and climatic changes explain the biogeographic history of a water rat
Cited by: 4
Author(s): Jeronymo Dalapicolla, Yuri Luiz Reis Leite
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0252987

Morus alba: Host reaction for Meloidogyne javanica, biological nematicides assessment and study of these relationships with yield and quality of leaves, cocoon and health of the silkworm
Cited by: 0
Author(s): Santino Aleandro da Silva, Renata da Rosa, Rachel Colauto Milanezi Aguiar, Cristianne Cordeiro Nascimento, Andressa Cristina Zamboni Machado
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.01287

Quorum Sensing Signals Alter in vitro Soil Virus Abundance and Bacterial Community Composition
Cited by: 12
Author(s): Xiaolong Liang, Regan E. Wagner, Bingxue Li, Ning Zhang, Mark Radosevich
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-62570-2

Scavenging crustacean fauna in the Chilean Patagonian Sea
Cited by: 3
Author(s): Guillermo Figueroa-Muñoz, Marco A. Retamal, Patricio R. De Los Ríos, Carlos Esse, Jorge Pérez-Schultheiss, Rolando Vega-Aguayo, Luz Boyero, Francisco Correa‐Araneda
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2020.618287

Niche Differentiation of Comammox Nitrospira in the Mudflat and Reclaimed Agricultural Soils Along the North Branch of Yangtze River Estuary
Cited by: 22
Author(s): Xinxin Wang, Lu Lu, Xue Zhou, Xiufeng Tang, Lu Kuang, Junhui Chen, Jun Shan, Huijie Lü, Hua Qin, Jonathan M. Adams, Baozhan Wang
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.6377

Disentangling the effect of host-genotype and environment on the microbiome of the coral Acropora tenuis
Cited by: 50
Author(s): Bettina Glasl, Caitlin E. Smith, David G. Bourne, Nicole S. Webster
Software Mentions: 4
Published: over 7 years ago

10.3390/genes10030233

The Patchy Distribution of Restriction–Modification System Genes and the Conservation of Orphan Methyltransferases in Halobacteria
Cited by: 26
Author(s): Matthew S. Fullmer, Matthew Ouellette, Artemis S. Louyakis, R. Thane Papke, J. Peter Gogarten
Software Mentions: 4
Published: over 7 years ago

10.3390/genes8100273

The History of Tree and Shrub Taxa on Bol'shoy Lyakhovsky Island (New Siberian Archipelago) since the Last Interglacial Uncovered by Sedimentary Ancient DNA and Pollen Data
Cited by: 35
Author(s): Heike Zimmermann, Elena Raschke, Laura S. Epp, Kathleen R. Stoof‐Leichsenring, Lutz Schirrmeister, Georg Schwamborn, Ulrike Herzschuh
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-020-58942-3

Amplicon sequencing analysis of arbuscular mycorrhizal fungal communities colonizing maize roots in different cover cropping and tillage systems
Cited by: 25
Author(s): Masao Higo, Yuya Tatewaki, Karen Iida, Kana Yokota, Katsunori Isobe
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0122163

Drivers and Patterns of Ground-Dwelling Beetle Biodiversity across Northern Canada
Cited by: 21
Author(s): Crystal M. Ernst, Christopher M. Buddle
Software Mentions: 4
Published: over 11 years ago

10.1038/s12276-021-00627-6

Gut microbiota restoration through fecal microbiota transplantation: a new atopic dermatitis therapy
Cited by: 36
Author(s): Jong-Hwa Kim, Ki‐Young Kim, Wonyong Kim
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.8042

Chronic trace metals effects of mine tailings on estuarine assemblages revealed by environmental DNA
Cited by: 44
Author(s): Ângelo F. Bernardino, Fabiano Sviatopolk-Mirsky Pais, Louisi Souza de Oliveira, Fabrício Ângelo Gabriel, Tiago Osório Ferreira, Hermano Melo Queiroz, Ana Carolina de Azevedo Mazzuco
Software Mentions: 4
Published: almost 7 years ago

10.1128/mSphere.00731-20

Nutrition and the Gut Microbiota in 10- to 18-Month-Old Children Living in Urban Slums of Mumbai, India
Cited by: 20
Author(s): Samantha L Huey, Lingjing Jiang, Marcus W. Fedarko, Daniel McDonald, Cameron Martino, Farhana Ali, David G. Russell, Shobha Udipi, Aparna Thorat, Varsha Thakker, Padmini Ghugre, Ramesh Potdar, Harsha Chopra, Kripa Rajagopalan, Jere D. Haas, Julia L. Finkelstein, Rob Knight, Saurabh Mehta
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2020.602404

Bovine Teat Cistern Microbiota Composition and Richness Are Associated With the Immune and Microbial Responses During Transition to Once-Daily Milking
Cited by: 7
Author(s): Lucie Rault, Pierre-Alexandre Lévêque, Sarah Barbey, Frédéric Launay, Hélène Larroque, Yves Le Loir, Pierre Germon, Jocelyne Guinard-Flament, Sergine Even
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0164121

Abundance and Diversity of Crypto- and Necto-Benthic Coastal Fish Are Higher in Marine Forests than in Structurally Less Complex Macroalgal Assemblages
Cited by: 38
Author(s): Pierre Thiriet, Antonio Franco, Adrien Cheminée, Paolo Guidetti, Olivier Bianchimani, Solène Basthard‐Bogain, Jean-Michel Cottalorda, Hazel O. Arceo, Joan Moranta, Pierre Lejeune, Patrice Francour, Luisa Mangialajo
Software Mentions: 4
Published: almost 10 years ago

10.1038/s41598-020-67717-9

Diversity of a bacterial community associated with Cliona lobata Hancock and Gelliodes pumila (Lendenfeld, 1887) sponges on the South-East coast of India
Cited by: 5
Author(s): R. Meenatchi, Pownraj Brindangnanam, Saqib Hassan, Rathna Kumarasamy, George Seghal Kiran, Joseph Selvin
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2021.610823

The Structure of Rhizosphere Fungal Communities of Wild and Domesticated Rice: Changes in Diversity and Co-occurrence Patterns
Cited by: 23
Author(s): Jingjing Chang, Yu Sun, Lei Tian, Ji Li, Shasha Luo, Fahad Nasir, Eiko E. Kuramae, Chunjie Tian
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0217306

Molecular analysis of the endobronchial stent microbial biofilm reveals bacterial communities that associate with stent material and frequent fungal constituents
Cited by: 13
Author(s): John E. McGinniss, Ize Imai, Áurea Simón-Soro, Melanie C. Brown, Vincent R. Knecht, Laura Frye, Priyanka M. Ravindran, Marisol I. Dothard, Dylan A. Wadell, Michael B. Sohn, Hongzhe Li, Jason D. Christie, Joshua M. Diamond, Andrew R. Haas, Anthony R. Lanfranco, David M. DiBardino, Frederic D. Bushman, Ronald G. Collman
Software Mentions: 4
Published: over 7 years ago

10.1534/g3.116.026914

Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance inGlycine soja, the Wild Progenitor of Cultivated Soybeans
Cited by: 39
Author(s): Justin Anderson, Thomas J. Y. Kono, Robert M. Stupar, Michael B. Kantar, Peter L. Morrell
Software Mentions: 4
Published: over 10 years ago

10.1111/1365-2435.13028

Habitat heterogeneity induces rapid changes in the feeding behaviour of generalist arthropod predators
Cited by: 42
Author(s): Karin Staudacher, Oskar Rennstam Rubbmark, Klaus Birkhofer, Gerard Malsher, Daniela Sint, Mattias Jonsson, Michael Traugott
Software Mentions: 4
Published: over 8 years ago

10.1111/1365-2435.13354

Immune state is associated with natural dietary variation in wild miceMus musculus domesticus
Cited by: 11
Author(s): Christopher H. Taylor, Stuart Young, Jonathan Fenn, Angela L. Lamb, Ann Lowe, Benoit Poulin, Andrew D. C. MacColl, Janette E. Bradley
Software Mentions: 4
Published: over 7 years ago

10.1111/eva.12555

Focusing the diversity ofGardnerella vaginalisthrough the lens of ecotypes
Cited by: 33
Author(s): Omar E. Cornejo, Roxana J. Hickey, Haruo Suzuki, Larry J. Forney
Software Mentions: 4
Published: almost 9 years ago

10.1128/mSphere.00525-21

Proteorhodopsin Phototrophy in Antarctic Coastal Waters
Cited by: 2
Author(s): Jerónimo Cifuentes-Anticevic, María E. Alcamán-Arias, Tomás Alarcón-Schumacher, Javier Tamayo-Leiva, Carlos Pedrós-Alió, Laura Farı́as, Beatriz Dı́ez
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0209025

Change in fish functional diversity and assembly rules in the course of tidal marsh restoration
Cited by: 11
Author(s): Alain Lechêne, Jérémy Lobry, Philippe Boët, Pascal Laffaille
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2020.01869

Comparative Genomics of Microbacterium Species to Reveal Diversity, Potential for Secondary Metabolites and Heavy Metal Resistance
Cited by: 20
Author(s): Erika Corretto, Livio Antonielli, Angela Sessitsch, Christoph Höfer, Markus Puschenreiter, Siegrid Widhalm, Karivaradharajan Swarnalakshmi, Günter Brader
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2020.584222

Functional Seasonality of Free-Living and Particle-Associated Prokaryotic Communities in the Coastal Adriatic Sea
Cited by: 8
Author(s): Paul A. Steiner, Javier Geijo, Eduard Fadeev, Aleix Obiol, Eva Sintes, Thomas Rattei, Gerhard J. Herndl
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2021.632947

Understanding Biofilm Formation in Ecotoxicological Assays With Natural and Anthropogenic Particulates
Cited by: 7
Author(s): Elena Gorokhova, Asa Motiei, Rehab El-Shehawy
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-68222-9

The implication of metabolically active Vibrio spp. in the digestive tract of Litopenaeus vannamei for its post-larval development
Cited by: 6
Author(s): Estefanía Garibay‐Valdez, Luis Rafael Martínez‐Córdova, Marco Antonio López‐Torres, F.J. Almendáriz-Tapia, Marcel Martínez‐Porchas, Kadiya Calderón
Software Mentions: 4
Published: about 6 years ago

10.1128/mBio.01451-21

Host Colonization as a Major Evolutionary Force Favoring the Diversity and the Emergence of the Worldwide Multidrug-Resistant Escherichia coli ST131
Cited by: 10
Author(s): Richard Bonnet, Racha Beyrouthy, Marisa Haenni, Marie–Hélène Nicolas–Chanoine, Guillaume Dalmasso, Jean‐Yves Madec
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2019.01448

Decoupling the Dynamics of Bacterial Taxonomy and Antibiotic Resistance Function in a Subtropical Urban Reservoir as Revealed by High-Frequency Sampling
Cited by: 24
Author(s): Peiju Fang, Peng Feng, Xiaofei Gao, Peng Xiao, Jun Yang
Software Mentions: 4
Published: about 7 years ago

10.3389/fvets.2018.00324

Developing Farm-Level Post-vaccination Sero-Monitoring Systems for H5N1 Highly Pathogenic Avian Influenza in an Endemically Infected Country
Cited by: 0
Author(s): Peter A. Durr, Risa Indriani, Paul Selleck, Abdul R M Adjid, Tatty Syafriati, Jagoda Ignjatovic
Software Mentions: 4
Published: over 7 years ago

10.3390/cancers12040825

Pan-Cancer Analysis of Mitochondria Chaperone-Client Co-Expression Reveals Chaperone Functional Partitioning
Cited by: 8
Author(s): Geut Galai, Hila Ben-David, Liron Levin, Martin F. Orth, Thomas Grünewald, Shai Pilosof, Shimon Berstein, Barak Rotblat
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-68136-6

Effects of substratum and depth on benthic harmful dinoflagellate assemblages
Cited by: 13
Author(s): Li Keat Lee, Zhen Fei Lim, Haifeng Gu, Leo Lai Chan, R. Wayne Litaker, Patricia A. Tester, Chui Pin Leaw, Po Teen Lim
Software Mentions: 4
Published: about 6 years ago

10.1128/mSphere.00562-20

Nasal Tissue Extraction Is Essential for Characterization of the Murine Upper Respiratory Tract Microbiota
Cited by: 4
Author(s): L. Patrick Schenck, Joshua J.C. McGrath, Daphnée Lamarche, Martin R. Stämpfli, Dawn M. E. Bowdish, Michael G. Surette
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-61817-2

Blood meal sources and bacterial microbiome diversity in wild-caught tsetse flies
Cited by: 21
Author(s): Alex Kiarie Gaithuma, Junya Yamagishi, Kyoko Hayashida, Nobuyoshi Kawai, Boniface Namangala, Chihiro Sugimoto
Software Mentions: 4
Published: over 6 years ago

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