Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.ppat.1008066

https://doi.org/10.1371/journal.ppat.1008066

Linking the effects of helminth infection, diet and the gut microbiota with human whole-blood signatures

Cited by: 25
Author(s): Soo Ching Lee, Mei Tang, Alice V. Easton, Joseph C. Devlin, Ling Ling Chua, Ilseung Cho, Foong Ming Moy, Tsung Fei Khang, Yvonne Ai Lian Lim, P’ng Loke
Published: almost 5 years ago

Software Mentions 4

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: genefilter
genefilter: methods for filtering genes from high-throughput experiments
Papers that mentioned: 142
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071