cran: vegan | Projects | Ecosyste.ms: Papers

10.1264/jsme2.ME18107

Deciphering the Assembly Processes of the Key Ecological Assemblages of Microbial Communities in Thirteen Full-Scale Wastewater Treatment Plants
Cited by: 13
Author(s): Liyuan Hou, Anyi Hu, Shaohua Chen, Kaisong Zhang, Sandi Orlić, Abbas Rashid, Chang-Ping Yu
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2018.02290

Organic Matter Regulates Ammonia-Oxidizing Bacterial and Archaeal Communities in the Surface Sediments of Ctenopharyngodon idellus Aquaculture Ponds
Cited by: 27
Author(s): Lili Dai, Chengqing Liu, Liqin Yu, Song Cheng, Peng Liang, Xiaoli Li, Ling Tao, Li Gu
Software Mentions: 4
Published: almost 8 years ago

10.7717/peerj.9821

Assessing the responses of Sphagnum micro-eukaryotes to climate changes using high throughput sequencing
Cited by: 10
Author(s): Monika Reczuga, Christophe V. W. Seppey, Matthieu Mulot, Vincent E. J. Jassey, Alexandre Buttler, Sandra Słowińska, Michael Słowiński, Enrique Lara, Mariusz Lamentowicz, Edward A. D. Mitchell
Software Mentions: 4
Published: about 6 years ago

10.1186/s40168-015-0089-2

Linear growth faltering in infants is associated with Acidaminococcus sp. and community-level changes in the gut microbiota
Cited by: 101
Author(s): Ethan Gough, David A. Stephens, Erica E. M. Moodie, Andrew J. Prendergast, Rebecca J. Stoltzfus, Jean H. Humphrey, Amee R. Manges
Software Mentions: 4
Published: over 11 years ago

10.3389/fmicb.2019.00347

Microbial Community Diversity Within Sediments from Two Geographically Separated Hadal Trenches
Cited by: 49
Author(s): Logan M. Peoples, Eleanna Grammatopoulou, Michelle Pombrol, Xu Xin, Oladayo Osuntokun, Jessica M. Blanton, Eric E. Allen, Clifton C. Nunnally, Jeffrey C. Drazen, Daniel J. Mayor, Douglas H. Bartlett
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2021.649312

Characterising Post-mortem Bacterial Translocation Under Clinical Conditions Using 16S rRNA Gene Sequencing in Two Animal Models
Cited by: 2
Author(s): Lily Gates, Nigel Klein, Neil J. Sebire, Dagmar Alber
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.4305

Lake regionalization and diatom metacommunity structuring in tropical South America
Cited by: 46
Author(s): Xavier Benito, Sherilyn C. Fritz, Miriam Steinitz‐Kannan, María Isabel Álvarez Vélez, Michael M. McGlue
Software Mentions: 4
Published: about 8 years ago

10.3390/ani11082412

Feeding Ecology of Wild Brown-Nosed Coatis and Garbage Exploration: A Study in Two Ecological Parks
Cited by: 2
Author(s): Delma Henriques Rodrigues, Eduardo Soares Calixto, Clarice Silva Cesário, Renata Barcelos Repolês, Waldomiro de Paula Lopes, Viviane Silva Oliveira, Alessandro Brinati, Nadja Simbera Hemetrio, Ita de Oliveira e Silva, Vanner Boere
Software Mentions: 4
Published: about 5 years ago

10.1007/s00248-021-01700-3

Soil microbial inoculation during flood events shapes headwater stream microbial communities and diversity
Cited by: 9
Author(s): Florian Caillon, Katharina Besemer, Peter Peduzzi, Jakob Schelker
Software Mentions: 4
Published: over 5 years ago

10.1084/jem.20201793

A positive feedback loop reinforces the allergic immune response in human peanut allergy
Cited by: 10
Author(s): Xiaoying Zhou, Wei Yu, Shu‐Chen Lyu, Claudia Macaubas, Bryan Bunning, Ziyuan He, Elizabeth Mellins, Kari Nadeau
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.01361

Biochar Amendment Stimulates Utilization of Plant-Derived Carbon by Soil Bacteria in an Intercropping System
Cited by: 33
Author(s): Hongkai Liao, Yaying Li, Huaiying Yao
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0047722

Beyond Streptococcus mutans: Dental Caries Onset Linked to Multiple Species by 16S rRNA Community Analysis
Cited by: 378
Author(s): Erin L. Gross, Clifford J. Beall, Stacey R. Kutsch, Noah D. Firestone, Eugene J. Leys, Ann L. Griffen
Software Mentions: 4
Published: almost 14 years ago

10.3390/ani11092682

Social Behaviour in Zoo Bachelor Groups: A Case Study of Related South American Fur Seals
Cited by: 0
Author(s): Christa Emmett, Mathilda Digby, J. H. Pope, Ellen Williams
Software Mentions: 4
Published: about 5 years ago

10.3390/jof1020185

Ectomycorrhizal Fungal Communities and Enzymatic Activities Vary across an Ecotone between a Forest and Field
Cited by: 15
Author(s): Megan A. Rúa, B. Moore, Nicole Marie Hergott, Lily Van, Colin R. Jackson, Jason D. Hoeksema
Software Mentions: 4
Published: about 11 years ago

10.1007/s00248-020-01576-9

Biodiversity Loss Threatens the Current Functional Similarity of Beta Diversity in Benthic Diatom Communities
Cited by: 8
Author(s): Leena Virta, Janne Soininen, Alf Norkko
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2020.556118

Beneficial Effects of Mixing Kentucky Bluegrass With Red Fescue via Plant-Soil Interactions in Black Soil of Northeast China
Cited by: 6
Author(s): Fang Xie, Gaoyun Zhang, Qianjiao Zheng, Kemeng Liu, Xiujie Yin, Xiaoyang Sun, Shah Saud, Zhan Shi, Runli Yuan, Wenjing Deng, Lu Zhang, Guowen Cui, Yajun Chen
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2021.667566

Conversion of a High-Altitude Temperate Forest for Agriculture Reduced Alpha and Beta Diversity of the Soil Fungal Communities as Revealed by a Metabarcoding Analysis
Cited by: 6
Author(s): Yendi E. Navarro‐Noya, Nina Montoya‐Ciriaco, Ligia Catalina Muñoz-Arenas, Stephanie Hereira-Pacheco, Arturo Estrada–Torres, Luc Dendooven
Software Mentions: 4
Published: about 5 years ago

10.3390/ani11061762

The Equine Faecal Microbiota of Healthy Horses and Ponies in The Netherlands: Impact of Host and Environmental Factors
Cited by: 17
Author(s): M. J. P. Theelen, Roosmarijn E C Luiken, Jaap A. Wagenaar, Marianne Sloet van Oldruitenborgh-Oosterbaan, John W. A. Rossen, Aldert Zomer
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0199132

Effects of low dose silver nanoparticle treatment on the structure and community composition of bacterial freshwater biofilms
Cited by: 23
Author(s): Alexandra Grün, Constantin Benjamin App, Andreas Breidenbach, Jutta Meier, George Metreveli, Gabriele E. Schaumann, Werner Manz
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2020.00993

The Core Gut Microbiome of Black Soldier Fly (Hermetia illucens) Larvae Raised on Low-Bioburden Diets
Cited by: 71
Author(s): Thomas Klammsteiner, Andreas Walter, Tajda Bogataj, Carina Desirée Heussler, Blaž Stres, Florian M. Steiner, Birgit C. Schlick‐Steiner, Wolfgang Arthofer, Heribert Insam
Software Mentions: 4
Published: over 6 years ago

10.1093/aobpla/plab015

Ecotypic differentiation of a circumpolar Arctic-alpine species at mid-latitudes: variations in the ploidy level and reproductive system of Vaccinium vitis-idaea
Cited by: 3
Author(s): Akimi Wakui, Gaku Kudo
Software Mentions: 4
Published: over 5 years ago

10.1038/s41396-019-0374-3

Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network
Cited by: 55
Author(s): Keith Bouma‐Gregson, Matthew R. Olm, Alexander J. Probst, Karthik Anantharaman, Mary E. Power, Jillian F. Banfield
Software Mentions: 4
Published: over 7 years ago

10.1186/s40168-017-0328-9

Blood as a route of transmission of uterine pathogens from the gut to the uterus in cows
Cited by: 73
Author(s): Seong-Jeub Jeon, Federico Cunha, A. Vieira-Neto, R.C. Bicalho, Svetlana Lima, M.L.S. Bicalho, Klibs N. Galvão
Software Mentions: 4
Published: about 9 years ago

10.7554/eLife.54792

Gut Helicobacter presentation by multiple dendritic cell subsets enables context-specific regulatory T cell generation
Cited by: 18
Author(s): Emilie V. Russler-Germain, Jaeu Yi, Shannon Young, Katherine Nutsch, Ho-Lun Wong, Teresa L. Ai, Jiani N. Chai, Vivek Durai, Daniel H. Kaplan, Ronald N. Germain, Kenneth M. Murphy, Chyi-Song Hsieh
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-021-01071-4

A synthetic probiotic engineered for colorectal cancer therapy modulates gut microbiota
Cited by: 60
Author(s): Yusook Chung, Yongku Ryu, Byung Chull An, Yeo-Sang Yoon, Oksik Choi, Tai Yeub Kim, Jae Kyung Yoon, Jun Young Ahn, Ho Jin Park, Soon-Kyeong Kwon, Jihyun F. Kim, Myung Jun Chung
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.9423

Highly diverse root endophyte bacterial community is driven by growth substrate and is plant genotype-independent in common bean (Phaseolus vulgaris L.)
Cited by: 10
Author(s): Aarón Barraza, Juan Carlos Vizuet-de-Rueda, Raúl Álvarez-Venegas
Software Mentions: 4
Published: about 6 years ago

10.1186/2049-2618-2-7

Bacterial communities on classroom surfaces vary with human contact
Cited by: 121
Author(s): James F. Meadow, Adam E. Altrichter, Steven W. Kembel, Maxwell Moriyama, Timothy K. O’Connor, A. M. Womack, Glen Brown, Jessica L. Green, B. J. M. Bohannan
Software Mentions: 4
Published: over 12 years ago

10.3389/fpls.2018.01605

Effects of Short- and Long-Term Variation in Resource Conditions on Soil Fungal Communities and Plant Responses to Soil Biota
Cited by: 10
Author(s): Philip G. Hahn, Lorinda Bullington, Beau Larkin, Kelly LaFlamme, John L. Maron, Ylva Lekberg
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0008745

Lactobacillus casei Abundance Is Associated with Profound Shifts in the Infant Gut Microbiome
Cited by: 112
Author(s): Michael J. Cox, Yvonne J. Huang, Kei E. Fujimura, Jane T. Liu, Michelle McKean, Homer A. Boushey, Mark R. Segal, Eoin L. Brodie, Michael D. Cabana, Susan V. Lynch
Software Mentions: 4
Published: over 16 years ago

10.1371/journal.pone.0182585

Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients
Cited by: 55
Author(s): Eli L. Moss, Shannon B. Falconer, Е. И. Ткаченко, Mingjie Wang, Hannah Systrom, Jasmin Mahabamunuge, David A. Relman, Elizabeth Hohmann, Ami S. Bhatt
Software Mentions: 4
Published: about 9 years ago

10.1186/s40168-019-0671-0

Phyllosphere epiphytic and endophytic fungal community and network structures differ in a tropical mangrove ecosystem
Cited by: 118
Author(s): Hui Yao, Xiang Sun, Chunguang He, Pulak Maitra, Xingchun Li, Liang Guo
Software Mentions: 4
Published: over 7 years ago

10.3389/fpls.2015.00485

Context dependency and saturating effects of loss of rare soil microbes on plant productivity
Cited by: 52
Author(s): W. H. Gera Hol, Wietse de Boer, Mattias de Hollander, Eiko E. Kuramae, Annelein Meisner, Wim H. van der Putten
Software Mentions: 4
Published: about 11 years ago

10.3389/fpls.2021.660658

Substrate Type Influences the Structure of Epiphyte Communities and the Growth of Posidonia oceanica Seedlings
Cited by: 1
Author(s): Davide De Battisti, Elena Balestri, G. Pardi, Virginia Menicagli, Claudio Lardicci
Software Mentions: 4
Published: over 5 years ago

10.1007/s11306-017-1259-y

Non-invasive real time monitoring of yeast volatilome by PTR-ToF-MS
Cited by: 20
Author(s): Iuliia Khomenko, Irene Stefanini, Luca Cappellin, Valentina Cappelletti, Pietro Franceschi, Duccio Cavalieri, T.D. Märk, Franco Biasioli
Software Mentions: 4
Published: about 9 years ago

10.3390/metabo10120518

Using Community Science to Reveal the Global Chemogeography of River Metabolomes
Cited by: 21
Author(s): Vanessa Garayburu‐Caruso, Robert Danczak, James C. Stegen, Lupita Renteria, Marcy L. McCall, Amy Goldman, Rosalie K. Chu, Jason Toyoda, Charles T. Resch, Joshua M. Torgeson, Jacqueline Wells, Sarah Fansler, Swatantar Kumar, Emily B. Graham
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-018-0610-5

The bacterial community significantly promotes cast iron corrosion in reclaimed wastewater distribution systems
Cited by: 30
Author(s): Guijuan Zhang, Bing Li, Jie Liu, Mingqiang Luan, Yao Long, Xiaotao Jiang, Ke Yu, Yuntao Guan
Software Mentions: 4
Published: almost 8 years ago

10.1093/aobpla/plab011

Presence of a dominant native shrub is associated with minor shifts in the function and composition of grassland communities in a northern savannah
Cited by: 0
Author(s): Isaac Peetoom Heida, Charlotte Brown, Margarete A Dettlaff, Kenneth Oppon, James Cahill
Software Mentions: 4
Published: over 5 years ago

10.3390/jof7030175

Pineapple Mycobiome Related to Fruitlet Core Rot Occurrence and the Influence of Fungal Species Dispersion Patterns
Cited by: 6
Author(s): Manon Vignassa, Jean-Christophe Meile, Frédéric Chiroleu, Christian Soria, Charlène Leneveu‐Jenvrin, Sabine Schorr‐Galindo, Marc Chillet
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-017-0337-8

More than 2500 years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis
Cited by: 22
Author(s): Antonios Michas, Gisle Vestergaard, Kathleen Trautwein, Pavlos Avramidis, Dimitris G. Hatzinikolaou, Constantinos E. Vorgias, Heinz Wilkes, Ralf Rabus, Michael Schloter, Anne Schöler
Software Mentions: 4
Published: about 9 years ago

10.3390/metabo10010001

Metatranscriptomic Analysis of the Mouse Gut Microbiome Response to the Persistent Organic Pollutant 2,3,7,8-Tetrachlorodibenzofuran
Cited by: 11
Author(s): Robert G. Nichols, Jingtao Zhang, Jingwei Cai, Iain A. Murray, Imhoi Koo, Philip B. Smith, Gary H. Perdew, Andrew D. Patterson
Software Mentions: 4
Published: almost 7 years ago

10.7717/peerj.9139

Drivers of beta diversity in modern and ancient reef-associated soft-bottom environments
Cited by: 5
Author(s): Vanessa Julie Roden, Martin Zuschin, Alexander Nützel, Imelda M. Hausmann, Wolfgang Kiessling
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0162777

Post-Fire Recovery in Coastal Sage Scrub: Seed Rain and Community Trajectory
Cited by: 4
Author(s): Erin Conlisk, Rebecca M. Swab, Alejandra Martínez‐Berdeja, Matthew P. Daugherty
Software Mentions: 4
Published: almost 10 years ago

10.3390/membranes10120415

Reducing the Impacts of Biofouling in RO Membrane Systems through In Situ Low Fluence Irradiation Employing UVC-LEDs
Cited by: 9
Author(s): Philipp Sperle, Christian Wurzbacher, Jörg E. Drewes, Bertram Skibinski
Software Mentions: 4
Published: almost 6 years ago

10.3390/jof7030194

The Banana Root Endophytome: Differences between Mother Plants and Suckers and Evaluation of Selected Bacteria to Control Fusarium oxysporum f.sp. cubense
Cited by: 23
Author(s): Carmen Gómez-Lama Cabanás, Antonio José Fernández-González, Martina Cardoni, Antonio Valverde-Corredor, Javier López-Cepero Borrego, Manuel Fernández‐López, Jesús Mercado‐Blanco
Software Mentions: 4
Published: over 5 years ago

10.1186/s13568-021-01225-5

Manipulating the soil microbiomes during a community recovery process with plant beneficial species for the suppression of Fusarium wilt of watermelon
Cited by: 14
Author(s): Xu Zhang, Cong Xue, D. C. Fang, Xiangming He, Mengyu Wei, Chenjin Zhuo, Junyao Jin, Biao Shen, Rong Li, Ning Ling, Qirong Shen
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.13195

Resistome diversity in cattle and the environment decreases during beef production
Cited by: 88
Author(s): Noelle Noyes, Xiang Yang, Lyndsey Linke, Roberta J. Magnuson, Adam Dettenwanger, Shaun R. Cook, Ifigenia Geornaras, D. Woerner, Sheryl Gow, Tim A. McAllister, Hua Yang, Jaime Ruiz, Kenneth L. Jones, Christina Boucher, Paul S. Morley, K. E. Belk
Software Mentions: 4
Published: over 10 years ago

10.1186/s40168-020-00986-8

Acquisition of oral microbiota is driven by environment, not host genetics
Cited by: 31
Author(s): Chiranjit Mukherjee, Christina O. Moyer, Heidi M. Steinkamp, Shahr B. Hashmi, Clifford J. Beall, Xiaohan Guo, Ai Ni, Eugene J. Leys, Ann L. Griffen
Software Mentions: 4
Published: over 5 years ago

10.3390/md17110601

Fungal Diversity in Intertidal Mudflats and Abandoned Solar Salterns as a Source for Biological Resources
Cited by: 18
Author(s): Young Mok Heo, Hanbyul Lee, Kyeongwon Kim, Sun Lul Kwon, Min Young Park, Ji Eun Kang, Gyu Hyeok Kim, Beom Seok Kim, Jae Jin Kim
Software Mentions: 4
Published: almost 7 years ago

10.3389/fpls.2020.01075

Populations of the Parasitic Plant Phelipanche ramosa Influence Their Seed Microbiota
Cited by: 23
Author(s): Sarah Huet, Jean‐Bernard Pouvreau, Erwan Delage, Sabine Delgrange, Coralie Marais, Muriel Bahut, Philippe Delavault, Philippe Simier, Lucie Poulin
Software Mentions: 4
Published: about 6 years ago

10.3389/fpls.2020.00636

Changes in Tea Plant Secondary Metabolite Profiles as a Function of Leafhopper Density and Damage
Cited by: 19
Author(s): Eric R. Scott, Xin Li, Ji‐Peng Wei, Nicole Kfoury, Joshua Morimoto, Mingming Guo, Amma Agyei, Albert Robbat, Selena Ahmed, Sean B. Cash, Timothy S. Griffin, John Richard Stepp, Han Wang, Colin M. Orians
Software Mentions: 4
Published: over 6 years ago

10.3389/fpls.2019.01697

Shifts in the Active Rhizobiome Paralleling Low Meloidogyne chitwoodi Densities in Fields Under Prolonged Organic Soil Management
Cited by: 19
Author(s): Paula Harkes, Joris J.M. van Steenbrugge, S.J.J. van den Elsen, Afnan Khalil Ahmad Suleiman, J.J. de Haan, M.H.M. Holterman, J. Helder
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2016.00403

Spatial and Temporal Variation of Cultivable Communities of Co-occurring Endophytes and Pathogens in Wheat
Cited by: 58
Author(s): Morgane Comby, Sandrine Lacoste, Fabienne Baillieul, Camille Profizi, Joëlle Dupont
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-021-97790-7

Glycosaminoglycan biosynthesis pathway in host genome is associated with Helicobacter pylori infection
Cited by: 0
Author(s): Dingxue Hu, Yueqi Lu, Daoming Wang, Chao Nie, Yan Li
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-015-0136-z

Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries
Cited by: 43
Author(s): Joel D. Rudney, Pratik Jagtap, Cavan Reilly, Ruoqiong Chen, Todd W. Markowski, LeeAnn Higgins, James E. Johnson, Timothy J. Griffin
Software Mentions: 4
Published: almost 11 years ago

10.3390/jof7050335

Effect of Isolation Conditions on Diversity of Endolichenic Fungal Communities from a Foliose Lichen, Parmotrema tinctorum
Cited by: 10
Author(s): Ji Ho Yang, Seung‐Yoon Oh, Wonyong Kim, Jung-Jae Woo, Hyeonjae Kim, Jae‐Seoun Hur
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0225842

Impact of oral probiotic Lactobacillus acidophilus vaccine strains on the immune response and gut microbiome of mice
Cited by: 14
Author(s): Zaid Abdo, Jonathan LeCureux, Alora LaVoy, Bridget Eklund, Elizabeth P. Ryan, Gregg A. Dean
Software Mentions: 4
Published: almost 7 years ago

10.1002/lno.11742

Amino acid <scp> δ 13 C </scp> and <scp> δ 15 N </scp> analyses reveal distinct species‐specific patterns of trophic plasticity in a marine symbiosis
Cited by: 14
Author(s): Christopher B. Wall, Natalie J. Wallsgrove, Ruth D. Gates, Brian N. Popp
Software Mentions: 4
Published: over 5 years ago

10.1002/lno.11361

The global Microcystis interactome
Cited by: 51
Author(s): Katherine V. Cook, Chuang Li, Haiyuan Cai, Lee R. Krumholz, K. David Hambright, Hans W. Paerl, Morgan M. Steffen, Alan E. Wilson, Michele A. Burford, Hans‐Peter Grossart, David P. Hamilton, Helong Jiang, Assaf Sukenik, Delphine Latour, Elisabeth I. Meyer, Judit Padisák, Boqiang Qin, Richard M. Zamor, Guangwei Zhu
Software Mentions: 4
Published: almost 7 years ago

10.1002/lno.10818

Feeding strategies for the acquisition of high‐quality food sources in stream macroinvertebrates: Collecting, integrating, and mixed feeding
Cited by: 53
Author(s): Fen Guo, Stuart E. Bunn, Michael T. Brett, Brian Fry, Hannes Hager, Xiaoguang Ouyang, Martin J. Kainz
Software Mentions: 4
Published: over 8 years ago

10.3390/ijms21093318

Epigenetic Patterns and Geographical Parthenogenesis in the Alpine Plant Species Ranunculus kuepferi (Ranunculaceae)
Cited by: 7
Author(s): Christoph C. F. Schinkel, Eleni Syngelaki, Bernhard Kirchheimer, Stefan Dullinger, Simone Klatt, Elvira Hörandl
Software Mentions: 4
Published: over 6 years ago

10.3390/life8040063

Impact of Rearing Conditions on the Ambrosia Beetle’s Microbiome
Cited by: 17
Author(s): Luis A. Ibarra-Juárez, Damaris Desgarennes, Mirna Vázquez-Rosas-Landa, Emanuel Villafán, Alexandro Alonso-Sánchez, Ofelia Ferrera-Rodríguez, Andrés Moya, Daniel Carrillo, Luisa F. Cruz, Gloria Carrión, Abel López-Buenfil, Clemente de Jesús García-Ávila, Enrique Ibarra-Laclette, Araceli Lamelas
Software Mentions: 4
Published: almost 8 years ago

10.1186/s40168-018-0472-x

Gestational diabetes is associated with change in the gut microbiota composition in third trimester of pregnancy and postpartum
Cited by: 252
Author(s): Mie Crusell, Tue H. Hansen, Trine Nielsen, Kristine H. Allin, Malte Rühlemann, Peter Damm, Henrik Vestergaard, Christina Rørbye, Niklas Rye Jørgensen, Ole Bjarne Christiansen, Femke-Anouska Heinsen, André Franke, Jeannet Lauenborg, Oluf Pedersen
Software Mentions: 4
Published: over 8 years ago

10.1186/s40168-020-00997-5

Rhizosphere community selection reveals bacteria associated with reduced root disease
Cited by: 96
Author(s): Chuntao Yin, Juan M. Casa Vargas, Daniel Schlatter, Christina H. Hagerty, Scot H. Hulbert, T. C. Paulitz
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2012.00252

Global Biodiversity of Aquatic Ammonia-Oxidizing Archaea is Partitioned by Habitat
Cited by: 86
Author(s): Steven J. Biller, Annika C. Mosier, George F. Wells, Christopher A. Francis
Software Mentions: 4
Published: over 14 years ago

10.3390/life11010007

The Gut Microbiome and Alcoholic Liver Disease: Ethanol Consumption Drives Consistent and Reproducible Alteration in Gut Microbiota in Mice
Cited by: 8
Author(s): Erick S. LeBrun, Meghali Nighot, Dharmaprakash Viszwapriya, Anand Kumar, Chien-Chi Lo, Patrick Chain, Y. Thomas
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2019.00877

Tropical Tree Branch-Leaf Nutrient Scaling Relationships Vary With Sampling Location
Cited by: 12
Author(s): Demetrius Lira-Martins, Emma Humphreys‐Williams, Stanislav Strekopytov, Françoise Yoko Ishida, Carlos Alberto Quesada, J. Lloyd
Software Mentions: 4
Published: about 7 years ago

10.3390/ani9121063

Effect of Supplementing Hydrolysable Tannins to a Grower–Finisher Diet Containing Divergent PUFA Levels on Growth Performance, Boar Taint Levels in Back Fat and Intestinal Microbiota of Entire Males
Cited by: 24
Author(s): M. Tretola, Federica Maghin, Paolo Silacci, S. Ampuero, Giuseppe Bee
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0195199

The ecological footprint of Acca sellowiana domestication maintains the residual vertebrate diversity in threatened highlands of Atlantic Forest
Cited by: 9
Author(s): Juliano André Bogoni, Maurício Eduardo Graipel, Nivaldo Peroni
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2021.718727

Soil Fungal Community in Grazed Inner Mongolian Grassland Adjacent to Coal-Mining Activity
Cited by: 2
Author(s): Liji Xie, Yinli Bi, Xianglei Li, Kun Wang, Peter Christie
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.4276

Local trampling disturbance effects on alpine plant populations and communities: Negative implications for climate change vulnerability
Cited by: 14
Author(s): Nathalie Isabelle Chardon, Sonja Wipf, Christian Rixen, Annabarbara Beilstein, Daniel F. Doak
Software Mentions: 4
Published: about 8 years ago

10.7717/peerj.6377

Disentangling the effect of host-genotype and environment on the microbiome of the coral Acropora tenuis
Cited by: 50
Author(s): Bettina Glasl, Caitlin E. Smith, David G. Bourne, Nicole S. Webster
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2021.670982

Geomicrobiological Heterogeneity of Lithic Habitats in the Extreme Environment of Antarctic Nunataks: A Potential Early Mars Analog
Cited by: 4
Author(s): Miguel Ángel Fernández-Martínez, Miriam García‐Villadangos, Mercedes Moreno‐Paz, Valentin Gangloff, Daniel Carrizo, Yolanda Blanco, Sergi González, Laura Sánchez-García, O. Prieto-Ballesteros, Ianina Altshuler, Lyle G. Whyte, Vı́ctor Parro, Alberto González Fairén
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2021.678959

Variation in Methyl Jasmonate-Induced Defense Among Norway Spruce Clones and Trade-Offs in Resistance Against a Fungal and an Insect Pest
Cited by: 10
Author(s): Adriana Puentes, Tao Zhao, Lina Lundborg, Niklas Björklund, Anna‐Karin Borg‐Karlson
Software Mentions: 4
Published: over 5 years ago

10.1186/s13068-018-1193-x

Increasing the economic value of lignocellulosic stillage through medium-chain fatty acid production
Cited by: 91
Author(s): Matthew Scarborough, Griffin Lynch, Mitch Dickson, Mick McGee, Timothy J. Donohue, Daniel R. Noguera
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0207917

Spatial variability of biogeochemistry in shallow coastal benthic communities of Potter Cove (Antarctica) and the impact of a melting glacier
Cited by: 13
Author(s): Ralf Hoffmann, Francesca Pasotti, Susana Vázquez, Nene Lefaible, Anders Torstensson, Walter P. Mac Cormack, Frank Wenzhöfer, Ulrike Braeckman
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0230071

The microbiome of modern microbialites in Bacalar Lagoon, Mexico
Cited by: 15
Author(s): Alfredo Yanez-Montalvo, Selene Gómez-Acata, Bernardo Águila, Héctor A. Hernández‐Arana, Luisa I. Falcón
Software Mentions: 4
Published: over 6 years ago

10.3389/fpls.2020.572741

Effect of Applying Struvite and Organic N as Recovered Fertilizers on the Rhizosphere Dynamics and Cultivation of Lupine (Lupinus angustifolius)
Cited by: 15
Author(s): Ana A. Robles-Aguilar, Oliver Grunert, Emma Hernandez-Sanabria, Mohamed Mysara, Erik Meers, Nico Boon, Nicolai David Jablonowski
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40168-017-0344-9

Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters
Cited by: 23
Author(s): Céline Lesaulnier, Craig W. Herbold, Claus Pelikan, David Berry, Cédric Gérard, Xavier Le Coz, Sophie Gagnot, Jutta Niggemann, Thorsten Dittmar, Gabriel Singer, Alexander Loy
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13068-018-1164-2

Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies
Cited by: 40
Author(s): Anna Alessi, Susannah Bird, Nicola C. Oates, Yang Li, Adam Dowle, E. H. Novotny, Eduardo R. deAzevedo, Joseph P. Bennett, Igor Polikarpov, J. Peter W. Young, Simon J. McQueen‐Mason, Neil C. Bruce
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0226835

Effect of endometriosis on the fecal bacteriota composition of mice during the acute phase of lesion formation
Cited by: 21
Author(s): Josefine Hantschel, Severin Weis, Karl‐Herbert Schäfer, Michael D. Menger, Matthias Kohl, Markus Egert, Matthias W. Laschke
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0215274

Multi-driver and multi-scale assessment of vine community structure and composition across a complex tropical environmental matrix
Cited by: 1
Author(s): Diana L. Delgado, Carla Restrepo
Software Mentions: 4
Published: over 7 years ago

10.3389/fpls.2021.682142

Shifts in the Abundances of Saprotrophic and Ectomycorrhizal Fungi With Altered Leaf Litter Inputs
Cited by: 12
Author(s): Sara Marañón-Jiménez, Dajana Radujković, Erik Verbruggen, Oriol Grau, Matthias Cuntz, Josep Peñuelas, Andreas Richter, Marion Schrumpf, Corinna Rebmann
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-020-00940-8

Perinatal environment shapes microbiota colonization and infant growth: impact on host response and intestinal function
Cited by: 43
Author(s): Marta Selma‐Royo, Marta Calatayud, Izaskun García-Mantrana, Anna Parra-Llorca, Ramón Escuriet, Cecilia Martínez‐Costa, María Carmen Collado
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2016.01468

Altered Precipitation Impacts on Above- and Below-Ground Grassland Invertebrates: Summer Drought Leads to Outbreaks in Spring
Cited by: 40
Author(s): Marcel D. Torode, Kirk Barnett, Sarah L. Facey, Uffe N. Nielsen, Sally A. Power, Scott N. Johnson
Software Mentions: 4
Published: almost 10 years ago

10.3390/ijerph16111919

Effects of Small Gaps on the Relationship Among Soil Properties, Topography, and Plant Species in Subtropical Rhododendron Secondary Forest, Southwest China
Cited by: 7
Author(s): Fenghua Tang, Wenxuan Quan, Chaochan Li, Xianfei Huang, Xianliang Wu, Qiaoan Yang, Yannan Pan, Tayan Xu, Chenyu Qian, Yunbing Gu
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0232835

Effects of arthropod inquilines on growth and reproductive effort among metacommunities of the purple pitcher plant (Sarracenia purpurea var. montana)
Cited by: 1
Author(s): Rebecca E. Hale, Elise Powell, Leila Beikmohamadi, Mara L. Alexander
Software Mentions: 4
Published: over 6 years ago

10.3390/biomedicines8040081

A Protocol for the Multi-Omic Integration of Cervical Microbiota and Urine Metabolomics to Understand Human Papillomavirus (HPV)-Driven Dysbiosis
Cited by: 3
Author(s): Nataliya Chorna, Filipa Godoy-Vitorino
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-019-0776-5

Coral microbiome composition along the northern Red Sea suggests high plasticity of bacterial and specificity of endosymbiotic dinoflagellate communities
Cited by: 55
Author(s): Eslam O. Osman, David J. Suggett, Christian R. Voolstra, D. Tye Pettay, Dave R. Clark, Claudia Pogoreutz, Eugenia M. Sampayo, Mark E. Warner, David J. Smith
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2019.02685

Minor Effect of Antibiotic Pre-treatment on the Engraftment of Donor Microbiota in Fecal Transplantation in Mice
Cited by: 36
Author(s): Tobias Freitag, Anna Hartikainen, Hanne Jouhten, Cecilia Sahl, Seppo Meri, Veli-Jukka Anttila, Eero Mattila, Perttu Arkkila, Jonna Jalanka, Reetta Satokari
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2020.00380

Diet and Genotype of an Aquatic Invertebrate Affect the Composition of Free-Living Microbial Communities
Cited by: 32
Author(s): Emilie Macke, Martijn Callens, François Massol, Isabel Vanoverberghe, Luc De Meester, Ellen Decaestecker
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.5984

Characterization of bacterioplankton communities and quantification of organic carbon pools off the Galapagos Archipelago under contrasting environmental conditions
Cited by: 5
Author(s): Nataly Guevara, Christiane Hassenrück, Pier Luigi Buttigieg, Astrid Gärdes
Software Mentions: 4
Published: almost 8 years ago

10.7717/peerj.7552

Oceanographic habitat and the coral microbiomes of urban-impacted reefs
Cited by: 4
Author(s): Stephanie M. Rosales, Christopher D. Sinigalliano, Maribeth L. Gidley, Paul R. Jones, Lewis J. Gramer
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.4017

5-Fluorouracil and irinotecan (SN-38) have limited impact on colon microbial functionality and composition in vitro.
Cited by: 7
Author(s): Eline Vanlancker, Barbara Vanhoecke, Andrea M. Stringer, Tom Van de Wiele
Software Mentions: 4
Published: over 9 years ago

10.1155/2020/1242364

Biliary Microbiota and Bile Acid Composition in Cholelithiasis
Cited by: 11
Author(s): В. А. Петров, M.A. Fernández-Peralbo, Rico Derks, Elena M. Knyazeva, Н. В. Мерзликин, А. Э. Сазонов, Oleg A. Mayboroda, Irina V. Saltykova
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-28939-0

Agulhas Current properties shape microbial community diversity and potential functionality
Cited by: 10
Author(s): Sandra Phoma, Surendra Vikram, Janet Jansson, Isabelle Ansorge, Don A. Cowan, Yves Van de Peer, Thulani P. Makhalanyane
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0252987

Morus alba: Host reaction for Meloidogyne javanica, biological nematicides assessment and study of these relationships with yield and quality of leaves, cocoon and health of the silkworm
Cited by: 0
Author(s): Santino Aleandro da Silva, Renata da Rosa, Rachel Colauto Milanezi Aguiar, Cristianne Cordeiro Nascimento, Andressa Cristina Zamboni Machado
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0217136

Diversity and relative abundance of ammonia- and nitrite-oxidizing microorganisms in the offshore Namibian hypoxic zone
Cited by: 5
Author(s): Evan Lau, Caitlin H. Frame, Edward J. Nolan, Frank J. Stewart, Zachary Dillard, Daniel Lukich, Nicole E Mihalik, Katelyn Yauch, Marcus Kinker, Samantha Waychoff
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-29932-3

Poultry and beef meat as potential seedbeds for antimicrobial resistant enterotoxigenic Bacillus species: a materializing epidemiological and potential severe health hazard
Cited by: 24
Author(s): Kamelia M. Osman, Anthony D. Kappell, Ahmed Orabi, Khalid S. Almaary, Ayman Mubarak, Turki M. Dawoud, Hassan A. Hemeg, Ihab M. Moussa, Ashgan M. Hessain, Hend M. Y. Yousef, Krassimira R. Hristova
Software Mentions: 4
Published: about 8 years ago

10.1186/s13073-021-00856-4

Trans-ethnic gut microbiota signatures of type 2 diabetes in Denmark and India
Cited by: 29
Author(s): Camila Alvarez-Silva, Alireza Kashani, Torben Hansen, Nishal Kumar Pinna, Ranjit Mohan Anjana, Anirban Dutta, Shruti Saxena, Julie Støy, Ulla Kampmann, Trine Nielsen, Torben Jørgensen, Visvanathan Gnanaprakash, Rameshkumar Gnanavadivel, Sukumaran Aswath, Coimbatore Subramanian Shanthi Rani, Kristine Færch, Venkatesan Radha, Muthuswamy Balasubramanyam, G. Balakrish Nair, Bhabatosh Das, Henrik Vestergaard, Torben Hansen, Sharmila S. Mande, Viswanathan Mohan, Manimozhiyan Arumugam, Oluf Pedersen
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9071378

Effects of Wine and Its Microbial-Derived Metabolites on Intestinal Permeability Using Simulated Gastrointestinal Digestion/Colonic Fermentation and Caco-2 Intestinal Cell Models
Cited by: 11
Author(s): Irene Zorraquín‐Peña, Diego Taladrid, Alba Tamargo, Mariana Silva, Natalia Molinero, Dolores González de Llano, Begoňa Bartolomé, M. Victoria Moreno‐Arribas
Software Mentions: 4
Published: about 5 years ago

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Papers Mentioning vegan 6,903