cran: vegan | Projects | Ecosyste.ms: Papers

10.1128/AEM.02992-18

Characterizing the Key Agents in a Disease-Suppressed Soil Managed by Reductive Soil Disinfestation
Cited by: 33
Author(s): Liang Liang Liu, Xinqi Huang, Jun Zhao, Jinbo Zhang, Zucong Cai
Software Mentions: 5
Published: over 7 years ago

10.1186/s40168-018-0555-8

The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch
Cited by: 54
Author(s): Alice Michel, Lewis M. Ward, Shana K. Goffredi, Katherine S. Dawson, Daniel T. Baldassarre, Alec Brenner, Kiyoko M. Gotanda, John E. McCormack, Sean W. Mullin, Ariel O’Neill, Gabrielle S. Tender, J. Albert C. Uy, Kristie Yu, Victoria J. Orphan, Jaime A. Chaves
Software Mentions: 5
Published: almost 8 years ago

10.1126/sciadv.aau4578

Fungal diversity regulates plant-soil feedbacks in temperate grassland
Cited by: 134
Author(s): Marina Semchenko, Jonathan W. Leff, Yudi M. Lozano, Sirgi Saar, John Davison, Anna Wilkinson, Benjamin G. Jackson, William J. Pritchard, Jonathan R. De Long, Simon Oakley, Kelly E. Mason, Nicholas J. Ostle, Elizabeth M. Baggs, David Johnson, Noah Fierer, Richard D. Bardgett
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-021-97619-3

Plant biodiversity assessment through pollen DNA metabarcoding in Natura 2000 habitats (Italian Alps)
Cited by: 13
Author(s): Kleopatra Leontidou, Despoina Vokou, Anna Sandionigi, Antonia Bruno, Maria Lazarina, Johannes De Groeve, Mingai Li, Claudio Varotto, Matteo Girardi, Andrea Galimberti, Alessandro Cristofori
Software Mentions: 5
Published: about 5 years ago

10.3390/microorganisms9071457

Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants
Cited by: 7
Author(s): Julia Hassa, Johanna Klang, Dirk Benndorf, Marcel Pohl, Benedikt Hülsemann, Torsten Mächtig, Mathias Effenberger, Alfred Pühler, Andreas Schlüter, Susanne Theuerl
Software Mentions: 5
Published: about 5 years ago

10.1126/sciadv.abb6376

Nonlinear landscape and cultural response to sea-level rise
Cited by: 9
Author(s): Robert L. Barnett, Dan Charman, C. H. W. Johns, Sophie L. Ward, Andrew Bevan, Sarah Bradley, Kevin Camidge, Ralph Fyfe, W. Roland Gehrels, Maria J. Gehrels, Jackie Hatton, Nicole S. Khan, P. Marshall, S. Yoshi Maezumi, Stephen Mills, Jacqui Mulville, Manuel Rodríguez Pérez, Helen M. Roberts, James Scourse, Francis Shepherd, Todd O. Stevens
Software Mentions: 5
Published: almost 6 years ago

10.1186/s40168-018-0458-8

Fecal Aliquot Straw Technique (FAST) allows for easy and reproducible subsampling: assessing interpersonal variation in trimethylamine-N-oxide (TMAO) accumulation
Cited by: 16
Author(s): Kymberleigh A. Romano, Kimberly A. Dill‐McFarland, Kazuyuki Kasahara, Robert L. Kerby, Eugenio I. Vivas, Daniel Amador‐Noguez, Pamela Herd, Federico E. Rey
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pbio.1002324

Five Years of Experimental Warming Increases the Biodiversity and Productivity of Phytoplankton
Cited by: 101
Author(s): D. Yvon, Andrew P. Allen, María Cellamare, Matteo Dossena, Kevin J. Gaston, Maria Leitão, José M. Montoya, Daniel C. Reuman, Guy Woodward, Mark Trimmer
Software Mentions: 5
Published: almost 11 years ago

10.3390/ani10112020

Vaginal Microbiota Is Stable throughout the Estrous Cycle in Arabian Mares
Cited by: 19
Author(s): Marta Barba, Rebeca Martínez-Boví, J.J. Quereda, M. L. Mocé, María Plaza-Dávila, E. Jiménez-Trigos, Ángel Gómez-Martín, Pedro González-Torres, Belén Carbonetto, E. García-Roselló
Software Mentions: 5
Published: almost 6 years ago

10.3390/microorganisms8010134

Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota
Cited by: 34
Author(s): Rodrigo García-López, Fernanda Cornejo‐Granados, Alonso A. López-Zavala, Filiberto Sánchez-López, Andrés Cota-Huízar, Rogerio R. Sotelo‐Mundo, Abraham Guerrero, Alfredo Mendoza-Vargas, Bruno Gómez‐Gil, Adrián Ochoa-Leyva
Software Mentions: 5
Published: over 6 years ago

10.1128/AEM.00149-21

Hyperlocal Variation in Soil Iron and the Rhizosphere Bacterial Community Determines Dollar Spot Development in Amenity Turfgrass
Cited by: 1
Author(s): Ming-Yi Chou, Smita Shrestha, Renée A. Rioux, Paul L. Koch
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0223691

The bacterial community in potato is recruited from soil and partly inherited across generations
Cited by: 31
Author(s): Franziska Buchholz, Livio Antonielli, Tanja Kostić, Angela Sessitsch, Birgit Mitter
Software Mentions: 5
Published: almost 7 years ago

10.1186/s40168-020-00925-7

Early-life gut dysbiosis linked to juvenile mortality in ostriches
Cited by: 28
Author(s): Elin Videvall, Se Jin Song, Hanna M. Bensch, Maria Strandh, Anel Engelbrecht, Naomi Serfontein, Olof Hellgren, Adriaan Olivier, S.W.P. Cloete, Rob Knight, Charlie K. Cornwallis
Software Mentions: 5
Published: almost 6 years ago

10.1186/s40168-021-01105-x

Dynamics of dark fermentation microbial communities in the light of lactate and butyrate production
Cited by: 35
Author(s): Anna Detman, Daniel Laubitz, Aleksandra Chojnacka, Pawel R. Kiela, Agnieszka Salamon, Albert Barberán, Yongjian Chen, Fei Yang, Mieczysław Błaszczyk, Anna Sikora
Software Mentions: 5
Published: about 5 years ago

10.1038/sdata.2019.7

The effect of 16S rRNA region choice on bacterial community metabarcoding results
Cited by: 222
Author(s): Yu. S. Bukin, Yuri P. Galachyants, И. В. Морозов, S. V. Bukin, А. S. Zakharenko, Т. I. Zemskaya
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0149852

How to Rank Journals
Cited by: 46
Author(s): Corey J. A. Bradshaw, Barry W. Brook
Software Mentions: 5
Published: over 10 years ago

10.1186/s40168-020-00907-9

Impact of investigational microbiota therapeutic RBX2660 on the gut microbiome and resistome revealed by a placebo-controlled clinical trial
Cited by: 33
Author(s): Suryang Kwak, Joo-Hee Choi, Tiffany Hink, Kimberly A. Reske, Kenneth Blount, Courtney Jones, Margaret H. Bost, Xiaoqing Sun, Carey-Ann D. Burnham, Erik R. Dubberke, Gautam Dantas
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pcbi.1007099

Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environments
Cited by: 46
Author(s): Matthew L. Jenior, Thomas J. Moutinho, Bonnie V. Dougherty, Jason A. Papin
Software Mentions: 5
Published: over 6 years ago

10.1038/sdata.2019.8

A metagenomic survey of soil microbial communities along a rehabilitation chronosequence after iron ore mining
Cited by: 33
Author(s): Markus Gastauer, Mabel Patricia Ortiz Vera, Kleber Padovani de Souza, Eder S. Pires, Ronnie Alves, Cecílio Fróis Caldeira, Sílvio Júnio Ramos, Guilherme Oliveira
Software Mentions: 5
Published: over 7 years ago

10.1186/s40168-018-0437-0

Species classifier choice is a key consideration when analysing low-complexity food microbiome data
Cited by: 56
Author(s): Aaron M. Walsh, Fiona Crispie, Órla O’Sullivan, Laura Finnegan, Marcus J. Claesson, Paul D. Cotter
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-26484-4

Network-guided genomic and metagenomic analysis of the faecal microbiota of the critically endangered kakapo
Cited by: 11
Author(s): David W. Waite, Melissa Dsouza, Yuji Sekiguchi, Philip Hugenholtz, Michael W. Taylor
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0223949

Megabenthic communities of the Ligurian deep continental shelf and shelf break (NW Mediterranean Sea)
Cited by: 35
Author(s): Francesco Enrichetti, Carlos Domínguez-Carrió, Margherita Toma, Giorgio Bavestrello, Federico Betti, Simonepietro Canese, Marzia Bo
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0129323

Microclimatic Divergence in a Mediterranean Canyon Affects Richness, Composition, and Body Size in Saproxylic Beetle Assemblages
Cited by: 4
Author(s): Jörn Buse, Samuel Fassbender, Martin H. Entling, Tomáš Pavlı́ček
Software Mentions: 5
Published: over 11 years ago

10.1128/AEM.02646-18

Changes in the Active, Dead, and Dormant Microbial Community Structure across a Pleistocene Permafrost Chronosequence
Cited by: 58
Author(s): Alexander Burkert, Thomas A. Douglas, Mark P. Waldrop, Rachel Mackelprang
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-018-28720-3

16S rRNA sequencing reveals likely beneficial core microbes within faecal samples of the EU protected slug Geomalacus maculosus
Cited by: 9
Author(s): Inga Reich, Umer Zeeshan Ijaz, Michael J. Gormally, Cindy J. Smith
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-018-28796-x

Differences between microhabitat and broad-scale patterns of niche evolution in terrestrial salamanders
Cited by: 47
Author(s): Gentile Francesco Ficetola, Enrico Lunghi, Claudia Canedoli, Emilio Padoa‐Schioppa, Roberta Pennati, Raoul Manenti
Software Mentions: 5
Published: about 8 years ago

10.1186/s40168-019-0651-4

Gut microbiota in HIV–pneumonia patients is related to peripheral CD4 counts, lung microbiota, and in vitro macrophage dysfunction
Cited by: 23
Author(s): Meera K. Shenoy, Douglas Fadrosh, David L. Lin, William Worodria, Patrick Byanyima, Emmanuel Musisi, Sylvia Kaswabuli, Josephine Zawedde, Ingvar Sanyu, Emily Chang, Serena Fong, Kathryn McCauley, J. Lucian Davis, Laurence Huang, Susan V. Lynch
Software Mentions: 5
Published: over 7 years ago

10.3390/jof6030180

Stem Endophytic Mycobiota in Wild and Domesticated Wheat: Structural Differences and Hidden Resources for Wheat Improvement
Cited by: 17
Author(s): Xiang Sun, Evsey Kosman, Amir Sharon
Software Mentions: 5
Published: almost 6 years ago

10.3390/microorganisms8010001

Fungal and Bacterial Communities Exhibit Consistent Responses to Reversal of Soil Acidification and Phosphorus Limitation over Time
Cited by: 9
Author(s): Sarah R. Carrino‐Kyker, Kaitlin P. Coyle, Laurel A. Kluber, David Burke
Software Mentions: 5
Published: over 6 years ago

10.3390/jof6040244

Effect of Host, Environment and Fungal Growth on Fungal Leaf Endophyte Communities in Taiwan
Cited by: 7
Author(s): Yu‐Ling Huang
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0135350

Conservation Status of North American Birds in the Face of Future Climate Change
Cited by: 90
Author(s): Gary Langham, Justin G. Schuetz, Trisha Distler, Candan U. Soykan, Chad B. Wilsey
Software Mentions: 5
Published: about 11 years ago

10.1038/s41598-018-29320-x

Endocervical and vaginal microbiota in South African adolescents with asymptomatic Chlamydia trachomatis infection
Cited by: 35
Author(s): Christina Balle, Katie Lennard, Smritee Dabee, Shaun Barnabas, Shameem Z. Jaumdally, Melanie A. Gasper, Venessa Maseko, Zizipho Z. A. Mbulawa, Anna‐Lise Williamson, Linda‐Gail Bekker, David A. Lewis, Jo‐Ann S. Passmore, Heather B. Jaspan
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0036466

A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy
Cited by: 546
Author(s): Kjersti M. Aagaard, Kevin Riehle, Jun Ma, Nicola Segata, Toni Ann Mistretta, Cristian Coarfa, Sabeen Raza, Sean Rosenbaum, Ignatia Van den Veyver, Aleksandar Milosavljevic, Dirk Gevers, Curtis Huttenhower, Joseph F. Petrosino, James Versalovic
Software Mentions: 5
Published: over 14 years ago

10.1038/s41598-021-97519-6

Landscape genetics and the genetic legacy of Upper Paleolithic and Mesolithic hunter-gatherers in the modern Caucasus
Cited by: 1
Author(s): Alexander Gavashelishvili, Alexey Yanchukov, David Tarkhnishvili, Marine Murtskhvaladze, Irakli Akhvlediani, Ceren Kazancı
Software Mentions: 5
Published: about 5 years ago

10.1186/s40168-021-01110-0

Prevotella copri increases fat accumulation in pigs fed with formula diets
Cited by: 70
Author(s): Congying Chen, Shouguo Fang, Hong Wei, Maozhang He, Hao Fu, Xinwei Xiong, Yunyan Zhou, Jingyuan Wu, Jun Gao, Hui Yang, Lusheng Huang
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-96990-5

Wood ants as biological control of the forest pest beetles Ips spp.
Cited by: 8
Author(s): Gema Trigos‐Peral, Orsolya Juhász, Péter János Kiss, Gábor Módra, Anna Tenyér, István Maák
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-018-29635-9

Trees represent community composition of other plant life-forms, but not their diversity, abundance or responses to fragmentation
Cited by: 15
Author(s): Bonifacio O. Pasion, Mareike Roeder, Jiajia Liu, Mika Yasuda, Richard T. Corlett, J. W. Ferry Slik
Software Mentions: 5
Published: about 8 years ago

10.3390/microorganisms9020346

Gut Microbiota Profile and Changes in Body Weight in Elderly Subjects with Overweight/Obesity and Metabolic Syndrome
Cited by: 13
Author(s): Alessandro Atzeni, Serena Galiè, Jananee Muralidharan, Nancy Babió, Francisco J. Tinahones, Jesús Vioque, Dolores Corella, Olga Castañer, Josep Vidal, Isabel Moreno-Indias, Laura Torres-Collado, Rebeca Fernández-Carrión, Montserrat Fitó, Romina Olbeyra, Miguel Ángel Martínez‐González, Mònica Bulló, Jordi Salas‐Salvadó
Software Mentions: 5
Published: over 5 years ago

10.3390/ani9110970

Enzymatically Digested Food Waste Altered Fecal Microbiota But Not Meat Quality and Carcass Characteristics of Growing-Finishing Pigs
Cited by: 2
Author(s): Cynthia Jinno, Perot Saelao, Elizabeth A. Maga, Arthur S. King, Dan Morash, Steven M. Zicari, Xiang Yang, Yanhong Liu
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-021-96910-7

Long-term data reveal unimodal responses of ground beetle abundance to precipitation and land use but no changes in taxonomic and functional diversity
Cited by: 9
Author(s): Petr Zajíček, Ellen A. R. Welti, Nathan J. Baker, Kathrin Januschke, Oliver Brauner, Peter Haase
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-018-30157-7

Multi-marker metabarcoding approach to study mesozooplankton at basin scale
Cited by: 72
Author(s): Sérgio Stefanni, D Stanković, Diego Borme, Alessandra de Olazabal, Tea Juretić, Alberto Pallavicini, Valentina Tirelli
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0230284

Lake-depth related pattern of genetic and morphological diatom diversity in boreal Lake Bolshoe Toko, Eastern Siberia
Cited by: 15
Author(s): Kathleen R. Stoof‐Leichsenring, Katharina Dulias, Boris K. Biskaborn, Ludmila A Pestryakova, Ulrike Herzschuh
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-018-31795-7

Macrofungal species distributions depend on habitat partitioning of topography, light, and vegetation in a temperate mountain forest
Cited by: 29
Author(s): Yun Chen, Zuoqiang Yuan, Bi Shi, Xueying Wang, Ye Yongzhong, Jens‐Christian Svenning
Software Mentions: 5
Published: about 8 years ago

10.1038/s41598-018-32917-x

Metabarcoding of marine environmental DNA based on mitochondrial and nuclear genes
Cited by: 42
Author(s): Babett Günther, Thomas Knebelsberger, Hermann Neumann, Silke Laakmann, Pedro Martínez Arbizu
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-018-34619-w

A multiscale study of fungal endophyte communities of the foliar endosphere of native rubber trees in Eastern Amazon
Cited by: 28
Author(s): Aline B. M. Vaz, Paula Luize Camargos Fonseca, Fernanda Badotti, Demetra Skaltsas, Luiz Marcelo Ribeiro Tomé, Allefi C. Silva, Mayara C. Cunha, Marco A. Soares, Vera Lúcia dos Santos, Guilherme Oliveira, Priscilla Chaverri, Aristóteles Goés-Neto
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0237118

Modulation of the intestinal microbiota of broilers supplemented with monensin or functional oils in response to challenge by Eimeria spp.
Cited by: 14
Author(s): Alexandre Maciel Vieira, Tatiany Aparecida Teixeira Soratto, Kátia Maria Cardinal, Glauber Wagner, Lucélia Hauptli, André Luís Ferreira Lima, Fabiano Dahlke, Diego Peres Netto, Priscila de Oliveira Moraes, Andréa Machado Leal Ribeiro
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-018-35159-z

Taxon-specific responses to different forestry treatments in a temperate forest
Cited by: 28
Author(s): Zoltán Elek, Bence Kovács, Réka Aszalós, Gergely Boros, Ferenc Samu, Flóra Tinya, Péter Ódor
Software Mentions: 5
Published: almost 8 years ago

10.3390/ijms19113421

Composition and Genetic Diversity of the Nicotiana tabacum Microbiome in Different Topographic Areas and Growth Periods
Cited by: 14
Author(s): Xiaolong Yuan, Min Cao, Xinmin Liu, Yongmei Du, Guoming Shen, Zhongfeng Zhang, Jinhai Li, Peng Zhang
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0037818

Bacterial Communities in Women with Bacterial Vaginosis: High Resolution Phylogenetic Analyses Reveal Relationships of Microbiota to Clinical Criteria
Cited by: 511
Author(s): Sujatha Srinivasan, Noah G. Hoffman, Martin Morgan, F. A. Matsen, Tina L. Fiedler, Richard Hall, Frederick J. Ross, Connor O. McCoy, Roger E. Bumgarner, Jeanne M. Marrazzo, David N. Fredricks
Software Mentions: 5
Published: over 14 years ago

10.1038/s41598-021-89926-6

Smoke from regional wildfires alters lake ecology
Cited by: 13
Author(s): Facundo Scordo, Sudeep Chandra, Erin Suenaga, Suzanne J. Kelson, Joshua Culpepper, Lucia Scaff, Flavia Tromboni, Timothy J. Caldwell, Carina Seitz, Juan Esteban Fiorenza, Craig E. Williamson, Steven Sadro, Kevin C. Rose, Simon R. Poulson
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0083684

Climatic Niche Evolution in New World Monkeys (Platyrrhini)
Cited by: 23
Author(s): Andressa Duran, Andreas L. S. Meyer, Márcio R. Pie
Software Mentions: 5
Published: over 12 years ago

10.1038/s41598-018-36709-1

Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents
Cited by: 27
Author(s): Olumide Ajibola, Aislinn D. Rowan, Clement O. Ogedengbe, Mari B. Mshelia, Damien J. Cabral, Anthonius A. Eze, Stephen K. Obaro, Peter Belenky
Software Mentions: 5
Published: over 7 years ago

10.1186/s40168-017-0297-z

Formula diet driven microbiota shifts tryptophan metabolism from serotonin to tryptamine in neonatal porcine colon
Cited by: 69
Author(s): Manish Kumar Saraf, Brian D. Piccolo, Anne K. Bowlin, Kelly E. Mercer, Tanya LeRoith, Sree V. Chintapalli, Kartik Shankar, Thomas M. Badger, Laxmi Yeruva
Software Mentions: 5
Published: about 9 years ago

10.7717/peerj.447

Mobile phones carry the personal microbiome of their owners
Cited by: 127
Author(s): James F. Meadow, Adam E. Altrichter, Jessica L. Green
Software Mentions: 5
Published: about 12 years ago

10.7717/peerj.5444

Darwin’s naturalization hypothesis does not explain the spread of nonnative weed species naturalized in México
Cited by: 0
Author(s): Judith Sánchez-Blanco, Ernesto V. Vega-Peña, Francisco J. Espinosa‐García
Software Mentions: 5
Published: about 8 years ago

10.1186/s40168-021-01058-1

Microbiomes of clownfish and their symbiotic host anemone converge before their first physical contact
Cited by: 7
Author(s): Émie Audet‐Gilbert, François‐Étienne Sylvain, Sidki Bouslama, Nicolas Derôme
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.8184

Investigating the effects of management practice on mammalian co-occurrence along the West Coast of South Africa
Cited by: 2
Author(s): Deborah Jean Winterton, Nicola J. van Wilgen, Jan A. Venter
Software Mentions: 5
Published: over 6 years ago

10.1186/s40168-021-01134-6

SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities
Cited by: 4
Author(s): Raminta Kazlauskaite, Bachar Cheaib, Chloe Heys, Umer Ijaz, Stephanie Connelly, William T. Sloan, Julie Russel, Laura Rubio, John Sweetman, Alex Kitts, Philip McGinnity, Philip Lyons, Martin S. Llewellyn
Software Mentions: 5
Published: about 5 years ago

10.1186/s40168-020-00858-1

Using soil bacterial communities to predict physico-chemical variables and soil quality
Cited by: 113
Author(s): Syrie M. Hermans, Hannah Buckley, Bradley S. Case, Fiona Curran-Cournane, Mykel R. Taylor, Gavin Lear
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.11012

Changes in diversity and community assembly of jumping spiders (Araneae: Salticidae) after rainforest conversion to rubber and oil palm plantations
Cited by: 13
Author(s): André Junggebauer, Tamara R. Hartke, Daniel Ramos, Ina Schaefer, Damayanti Buchori, Purnama Hidayat, Stefan Scheu, Jochen Drescher
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0236165

Diversity and structure of soil microbiota of the Jinsha earthen relic
Cited by: 4
Author(s): Sheng Yang, Linfeng Wu, Bin Wu, Yizheng Zhang, Haiyan Wang, Xuemei Tan
Software Mentions: 5
Published: about 6 years ago

10.3390/ijms18081654

A Different Microbiome Gene Repertoire in the Airways of Cystic Fibrosis Patients with Severe Lung Disease
Cited by: 35
Author(s): Giovanni Bacci, Alessio Mengoni, Ersilia Fiscarelli, Nicola Segata, Giovanni Taccetti, Daniela Dolce, Patrizia Paganin, Patrizia Morelli, Vanessa Tuccio Guarna Assanti, A. De Alessandri, Vincenzina Lucidi, Annamaria Bevivino
Software Mentions: 5
Published: about 9 years ago

10.1186/s13071-016-1584-4

Genetic diversity of two Daphnia-infecting microsporidian parasites, based on sequence variation in the internal transcribed spacer region
Cited by: 9
Author(s): Enrique González-Tortuero, Jakub Rusek, Inbar Maayan, Adam Petrusek, Lubomír Piálek, Stefan Laurent, Justyna Wolinska
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0145099

Variability of Symbiodinium Communities in Waters, Sediments, and Corals of Thermally Distinct Reef Pools in American Samoa
Cited by: 54
Author(s): Ross Cunning, Denise M. Yost, Marisa L. Guarinello, Hollie M. Putnam, Ruth D. Gates
Software Mentions: 5
Published: over 10 years ago

10.7717/peerj.8317

Alteration of the gut microbiota associated with childhood obesity by 16S rRNA gene sequencing
Cited by: 65
Author(s): Xiaowei Chen, Haixiang Sun, Fei Jiang, Yan Shen, Xin Li, HU Xue-ju, Xiao-Min Shen, Pingmin Wei
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms9071374

The Microbiome Associated with the Reef Builder Neogoniolithon sp. in the Eastern Mediterranean
Cited by: 2
Author(s): Shany Gefen-Treves, Alexander Bartholomäus, Fabian Horn, Adam Boleslaw Zaborowski, Dan Tchernov, Dirk Wagner, Aharon Oren, Aaron Kaplan
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.3098

Metagenomic analysis exploring taxonomic and functional diversity of soil microbial communities in Chilean vineyards and surrounding native forests
Cited by: 107
Author(s): Luis E. Castañeda, Olga Barbosa
Software Mentions: 5
Published: over 9 years ago

10.7717/peerj.4606

Can phosphorus application and cover cropping alter arbuscular mycorrhizal fungal communities and soybean performance after a five-year phosphorus-unfertilized crop rotational system?
Cited by: 21
Author(s): Masao Higo, Ryohei Sato, Ayu Serizawa, Yuichi Takahashi, Kento Gunji, Yuya Tatewaki, Katsunori Isobe
Software Mentions: 5
Published: over 8 years ago

10.3390/microorganisms9081711

Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts
Cited by: 6
Author(s): Marie-Charlotte Cheutin, Sébastien Villéger, Christina C. Hicks, James P. W. Robinson, Nicholas A. J. Graham, Clémence Marconnet, Claudia Ximena Ortiz Restrepo, Yvan Bettarel, Thierry Bouvier, Jean‐Christophe Auguet
Software Mentions: 5
Published: about 5 years ago

10.1186/s40168-018-0496-2

Signatures of ecological processes in microbial community time series
Cited by: 64
Author(s): Karoline Faust, Franziska Bauchinger, Béatrice Laroche, Sophie de Buyl, Leo Lahti, Alex D. Washburne, Didier Gonze, Stefanie Widder
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0245857

Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation
Cited by: 9
Author(s): Rachel M. Wilson, Ahmed A. Zayed, Kelsey B. Crossen, Ben J. Woodcroft, Malak M. Tfaily, Joanne B. Emerson, Nicole Raab, S. B. Hodgkins, B. A. Verbeke, Gene W. Tyson, Patrick Crill, S. R. Saleska, Jeffrey P. Chanton, V. I. Rich
Software Mentions: 5
Published: over 5 years ago

10.1017/S0031182021000640

Functional traits shape small mammal-helminth network: patterns and processes in species interactions
Cited by: 9
Author(s): Thiago dos Santos Cardoso, Cecilia S. Andreazzi, Arnaldo Maldonado, Rosana Gentile
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.9644

Microbiome dynamics in the tissue and mucus of acroporid corals differ in relation to host and environmental parameters
Cited by: 26
Author(s): Giulia M. Marchioro, Bettina Glasl, Aschwin H. Engelen, Ester Á. Serrão, David G. Bourne, Nicole S. Webster, Pedro R. Frade
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj.9777

Generalized Linear Models outperform commonly used canonical analysis in estimating spatial structure of presence/absence data
Cited by: 4
Author(s): Lélis Antonio Carlos-Júnior, Joel Christopher Creed, Rob H. Marrs, Rob J. Lewis, Timothy P. Moulton, Rafael Feijó‐Lima, Matthew Spencer
Software Mentions: 5
Published: about 6 years ago

10.1186/s40168-020-00893-y

Antimicrobial drug use in the first decade of life influences saliva microbiota diversity and composition
Cited by: 16
Author(s): Sajan C. Raju, Heli Viljakainen, Rejane Augusta de Oliveira Figueiredo, Pertti J. Neuvonen, Johan G. Eriksson, Elisabete Weiderpass, Trine B. Rounge
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj.8809

The impact of diel vertical migration on fatty acid patterns and allocation inDaphnia magna
Cited by: 4
Author(s): Meike Anika Hahn, Eric von Elert
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-021-96378-5

Biogeography of acoustic biodiversity of NW Mediterranean coralligenous reefs
Cited by: 13
Author(s): Lucia Di Iorio, Manon Audax, Julie Déter, Florian Holon, Julie Lossent, Cédric Gervaise, Pierre Boissery
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.7014

Soil bacterial and fungal communities of six bahiagrass cultivars
Cited by: 10
Author(s): Lukas Beule, Ko‐Hsuan Chen, Chih‐Ming Hsu, Cheryl L. Mackowiak, José C. B. Dubeux, Ann R. Blount, Hui‐Ling Liao
Software Mentions: 5
Published: over 7 years ago

10.7717/peerj.6481

Mat thickness associated withDidymosphenia geminataandCymbellaspp. in the southern rivers of Chile
Cited by: 1
Author(s): Daniel Zamorano, Matías Peredo-Parada, Diana J. Lillo, Jorge Parodí, Carolina A. Díaz
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0180969

Impact of environmental microbiota on human microbiota of workers in academic mouse research facilities: An observational study
Cited by: 30
Author(s): Peggy S. Lai, Joseph G. Allen, Diane S. Hutchinson, Nadim J. Ajami, Joseph F. Petrosino, Thomas Winters, Christopher Hug, Gary R. Wartenberg, Jose Vallarino, David C. Christiani
Software Mentions: 5
Published: about 9 years ago

10.7717/peerj.1900

A comparison of species composition and community assemblage of secondary forests between the birch and pine-oak belts in the mid-altitude zone of the Qinling Mountains, China
Cited by: 13
Author(s): Zongzheng Chai, Dexiang Wang
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0230221

Driving factors of conifer regeneration dynamics in eastern Canadian boreal old-growth forests
Cited by: 22
Author(s): Maxence Martin, Miguel Montoro Girona, Hubert Morin
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2018.02227

Analysis of the Rumen Microbiome and Metabolome to Study the Effect of an Antimethanogenic Treatment Applied in Early Life of Kid Goats
Cited by: 19
Author(s): Leticia Abecia, Gonzalo Martínez Fernández, Kate Waddams, A. I. Martin-García, Eric Pinloche, Christopher J. Creevey, Stuart E. Denman, C. J. Newbold, D. R. Yáñez-Ruíz
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmicb.2019.01961

Sponges and Their Microbiomes Show Similar Community Metrics Across Impacted and Well-Preserved Reefs
Cited by: 19
Author(s): Marta Turon, Joan Cáliz, Xavier Triadó–Margarit, Emilio O. Casamayor, María Jesús Uriz
Software Mentions: 5
Published: about 7 years ago

10.3389/fmicb.2020.01735

Great Tit (Parus major) Uropygial Gland Microbiomes and Their Potential Defensive Roles
Cited by: 13
Author(s): Kasun H. Bodawatta, Signe K. Schierbech, Nanna R. Petersen, Kateřina Sam, Nick Bos, Knud A. Jønsson, Michael Poulsen
Software Mentions: 5
Published: about 6 years ago

10.1186/s12890-016-0303-4

The bronchial epithelial cell bacterial microbiome and host response in patients infected with human immunodeficiency virus
Cited by: 6
Author(s): Marc A. Sze, Stella Xu, Janice M. Leung, Emily A. Vucic, Tawimas Shaipanich, Aida Moghadam, Marianne Harris, Silvia Guillemi, Sunita Sinha, Corey Nislow, Darra Murphy, Cameron Hague, Jonathon Leipsic, Stephen Lam, Wan L. Lam, Julio S. G. Montaner, Don D. Sin, S. F. Paul Man
Software Mentions: 5
Published: almost 10 years ago

10.7717/peerj.11230

Ectomycorrhizal fungal communities associated with Larix gemelinii Rupr. in the Great Khingan Mountains, China
Cited by: 2
Author(s): Yong-Long Wang, Ye Zhao, Ying Xu, MA Jian-jun, Busayo Joshua Babalola, Yida Fan
Software Mentions: 5
Published: over 5 years ago

10.1186/s12917-020-02660-5

Subgingival microbiota of dogs with healthy gingiva or early periodontal disease from different geographical locations
Cited by: 12
Author(s): Corrin Wallis, Lisa Milella, Alison Colyer, Ciaran O’Flynn, Stephen Harris, Lucy J. Holcombe
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.737116

Phosphate-Solubilizing Bacterium Acinetobacter pittii gp-1 Affects Rhizosphere Bacterial Community to Alleviate Soil Phosphorus Limitation for Growth of Soybean (Glycine max)
Cited by: 15
Author(s): Donglan He, Wenjie Wan
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.8172

Exploring profile and potential influencers of vaginal microbiome among asymptomatic pregnant Chinese women
Cited by: 10
Author(s): Yining He, Yun Huang, Zhengyin Zhang, Fei Yu, Yuejie Zheng
Software Mentions: 5
Published: almost 7 years ago

10.1186/s40168-018-0511-7

Disruption of maternal gut microbiota during gestation alters offspring microbiota and immunity
Cited by: 96
Author(s): Donald D. Nyangahu, Katie Lennard, Bryan P. Brown, Matthew Darby, Jerome Wendoh, Enock Havyarimana, Peter Smith, James Butcher, Alain Stintzi, Nicola Mulder, William G. C. Horsnell, Heather B. Jaspan
Software Mentions: 5
Published: about 8 years ago

10.1016/j.wroa.2019.100033

Organic substrate diffusibility governs microbial community composition, nutrient removal performance and kinetics of granulation of aerobic granular sludge
Cited by: 74
Author(s): Manuel Layer, Aline Sondra Adler, Eva Reynaert, Antonio Hernández, Marco Pagni, Eberhard Morgenroth, Christof Holliger, Nicolas Derlon
Software Mentions: 5
Published: about 7 years ago

10.3389/fmicb.2020.01110

Dietary Soluble and Insoluble Fiber With or Without Enzymes Altered the Intestinal Microbiota in Weaned Pigs Challenged With Enterotoxigenic E. coli F18
Cited by: 28
Author(s): Qingyun Li, Xiyu Peng, Eric Burrough, Orhan Şahin, Stacie A Gould, Nicholas K. Gabler, Crystal L. Loving, Karin S. Dorman, John F. Patience
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2018.00922

Enrichment of Bacteria From Eastern Mediterranean Sea Involved in Lignin Degradation via the Phenylacetyl-CoA Pathway
Cited by: 20
Author(s): Hyun-Joo Woo, Terry C. Hazen
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2020.01757

The Composition of Microbial Communities in Six Streams, and Its Association With Environmental Conditions, and Foodborne Pathogen Isolation
Cited by: 9
Author(s): Taejung Chung, Daniel Weller, Jasna Kovač
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2019.03105

Community Assembly of Endophytic Fungi in Ectomycorrhizae of Betulaceae Plants at a Regional Scale
Cited by: 12
Author(s): Yong-Long Wang, Cheng Gao, Liang Chen, Niu‐Niu Ji, Bian Wu, Pingli Lu, Xingchun Li, Xin Qian, Pulak Maitra, Busayo Joshua Babalola, Yong Zheng, Liang‐Dong Guo
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.10424

Ixodes scapularis microbiome correlates with life stage, not the presence of human pathogens, in ticks submitted for diagnostic testing
Cited by: 14
Author(s): Joshua C Gil, Zeinab H. Helal, Guillermo R. Risatti, Sarah M. Hird
Software Mentions: 5
Published: almost 6 years ago

10.3389/fmicb.2018.01561

A Single Vibrionales 16S rRNA Oligotype Dominates the Intestinal Microbiome in Two Geographically Separated Atlantic cod Populations
Cited by: 16
Author(s): Even Sannes Riiser, Thomas Haverkamp, Ørnulf Borgan, Kjetill S. Jakobsen, Sissel Jentoft, Bastiaan Star
Software Mentions: 5
Published: about 8 years ago

10.1186/s12903-021-01439-w

Microbiological findings in early and late implant loss: an observational clinical case-controlled study
Cited by: 12
Author(s): Michael Korsch, Silke‐Mareike Marten, Dominic A. Stoll, Christopher Prechtl, Andreas Dötsch
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-91425-7

Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiome
Cited by: 17
Author(s): Yuta Kinoshita, Hidekazu Niwa, Eri Uchida‐Fujii, Toshio Nukada
Software Mentions: 5
Published: over 5 years ago

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Papers Mentioning vegan 6,903