cran: statnet | Projects | Ecosyste.ms: Papers

10.3390/metabo9100200

The metaRbolomics Toolbox in Bioconductor and beyond
Cited by: 61
Author(s): Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy A. Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Michael Rainer, Reza M. Salek, Tobias Schulze, Emma L. Schymanski, Michael A. Stravs, Etienne Thévenot, Hendrik Treutler, Ralf Weber, Egon Willighagen, Michael Witting, Steffen Neumann
Software Mentions: 92
Published: almost 5 years ago

10.3390/biom10121606

A Customizable Analysis Flow in Integrative Multi-Omics
Cited by: 14
Author(s): Samuel M. Lancaster, Akshay Sanghi, Si Wu, M Snyder
Software Mentions: 15
Published: almost 4 years ago

10.2196/11652

Using Partially-Observed Facebook Networks to Develop a Peer-Based HIV Prevention Intervention: Case Study
Cited by: 7
Author(s): Aditya Khanna, Steven M. Goodreau, Stuart Michaels, John A. Schneider
Software Mentions: 12
Published: about 6 years ago

10.1128/mSystems.00068-21

Diverse Viruses in Deep-Sea Hydrothermal Vent Fluids Have Restricted Dispersal across Ocean Basins
Cited by: 14
Author(s): Elaina Thomas, R. Anderson, Viola Li, L Jenni Rogan, Julie A. Huber
Software Mentions: 11
Published: about 3 years ago

10.1038/s41598-019-56288-z

Interactions with humans are jointly influenced by life history stage and social network factors and reduce group cohesion in moor macaques (Macaca maura)
Cited by: 26
Author(s): Kristen S. Morrow, Hunter Glanz, Putu Oka Ngakan, Erin P. Riley
Software Mentions: 9
Published: over 4 years ago

10.1371/journal.pone.0204990

Blaunet: An R-based graphical user interface package to analyze Blau space
Cited by: 4
Author(s): Michael Genkin, Cheng Wang, George Berry, Matthew E. Brashears
Software Mentions: 9
Published: almost 6 years ago

10.1093/bib/bbaa290

NetCoMi: network construction and comparison for microbiome data in R
Cited by: 165
Author(s): Stefanie Peschel, Christian L. Müller, Erika von Mutius, Anne‐Laure Boulesteix, Martin Depner
Software Mentions: 8
Published: almost 4 years ago

10.3389/fvets.2018.00071

Effective Network Size Predicted From Simulations of Pathogen Outbreaks Through Social Networks Provides a Novel Measure of Structure-Standardized Group Size
Cited by: 12
Author(s): Collin M. McCabe, Charles L. Nunn
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0178904

Modeling the live-pig trade network in Georgia: Implications for disease prevention and control
Cited by: 28
Author(s): Esther A. Kukielka, Beatriz Martínez‐López, Daniel Beltrán‐Alcrudo
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0227804

Exponential random graph model parameter estimation for very large directed networks
Cited by: 26
Author(s): Alex Stivala, Garry Robins, Alessandro Lomi
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-020-67221-0

Diversity hotspot and unique community structure of foraminifera in the world’s deepest marine blue hole – Sansha Yongle Blue Hole
Cited by: 13
Author(s): Qingxia Li, Yanli Lei, Raphaёl Morard, Tiegang Li, Baodong Wang
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0193759

Sharing-based social capital associated with harvest production and wealth in the Canadian Arctic
Cited by: 25
Author(s): Elspeth Ready
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-019-41103-6

Reconstructing foot-and-mouth disease outbreaks: a methods comparison of transmission network models
Cited by: 30
Author(s): Simon M. Firestone, Yoko Hayama, Richard Bradhurst, Takehisa Yamamoto, Toshiyuki Tsutsui, Mark Stevenson
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-47087-7

Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms
Cited by: 6
Author(s): Juan Carlos Gómez-Verján, Ricardo Ramírez‐Aldana, Mario Ulises Pérez‐Zepeda, Ricardo Quiroz‐Baez, Armando Luna–López, Luis Miguel Gutiérrez Robledo
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0235660

Transmission network reconstruction for foot-and-mouth disease outbreaks incorporating farm-level covariates
Cited by: 12
Author(s): Simon M. Firestone, Yoko Hayama, Max S. Y. Lau, Takehisa Yamamoto, Tatsuya Nishi, Richard Bradhurst, Haydar Demirhan, Mark Stevenson, Toshiyuki Tsutsui
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0244377

A methodology and theoretical taxonomy for centrality measures: What are the best centrality indicators for student networks?
Cited by: 7
Author(s): Kristel Vignery, Wim Laurier
Software Mentions: 5
Published: over 3 years ago

10.1186/s13012-016-0499-y

Forging a link between mentoring and collaboration: a new training model for implementation science
Cited by: 35
Author(s): Douglas A. Luke, Ana A. Baumann, Bobbi J. Carothers, John Landsverk, Enola K. Proctor
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pgen.1009190

Mouse mutant phenotyping at scale reveals novel genes controlling bone mineral density
Cited by: 17
Author(s): Anna L Swan, Christine Schütt, Jan Rozman, Maria del Mar Muñiz Moreno, Stefan Brandmaier, Michelle Simon, Stefanie Leuchtenberger, Mark Griffiths, Robert Brommage, Piia Keskivali-Bond, Harald Grallert, Thomás Werner, Raffaele Teperino, Lore Becker, Gregor Miller, Ala Moshiri, John R. Seavitt, Derek D. Cissell, Fabio Mammano, Elif F. Acar, Christopher J. Lelliott, Ann M. Flenniken, Marie‐France Champy, Tania Sorg, Abdel Ayadi, Robert E. Braun, Heather Cater, Mary E. Dickinson, Paul Flicek, Juan Gallegos, Elena J. Ghirardello, Jason D. Heaney, Sylvie Jacquot, Connor Lally, John G. Logan, Lydia Teboul, Jeremy Mason, Nadine Spielmann, Colin McKerlie, Stephen A. Murray, Lauryl M. J. Nutter, Kristian F. Odfalk, Helen Parkinson, Jan Procházka, Corey Reynolds, Mohammed Selloum, František Špoutil, Karen L. Svenson, Taylor S. Vales, Sara Wells, Jacqueline K. White, Radislav Sedláček, Wolfgang Wurst, Kevin C K Lloyd, Peter I. Croucher, Helmut Fuchs, Graham R. Williams, J. H. Duncan Bassett, Valérie Gailus‐Durner, Yann Hérault, Ann‐Marie Mallon, Steve Brown, Philipp Mayer‐Kuckuk, Martin Hrabě de Angelis
Software Mentions: 3
Published: over 3 years ago

10.1098/rspb.2018.0023

Collective ritual and social support networks in rural South India
Cited by: 23
Author(s): Eleanor A. Power
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0242621

Victims, offenders and victim-offender overlaps of knife crime: A social network analysis approach using police records
Cited by: 11
Author(s): Louis Bailey, Vincent Harinam, Barak Ariel
Software Mentions: 3
Published: almost 4 years ago

10.1186/1472-6963-14-22

Integration opportunities for HIV and family planning services in Addis Ababa, Ethiopia: an organizational network analysis
Cited by: 16
Author(s): James C. Thomas, Heidi W. Reynolds, Christine A. Bevc, Ademe Tsegaye
Software Mentions: 3
Published: over 10 years ago

10.1016/j.csbj.2016.05.003

Sequence comparison, molecular modeling, and network analysis predict structural diversity in cysteine proteases from the Cape sundew, Drosera capensis
Cited by: 19
Author(s): Carter T. Butts, Xuhong Zhang, John Kelly, Kyle Roskamp, Megha H. Unhelkar, J. Alfredo Freites, S. Hasan Tahir, Rachel W. Martin
Software Mentions: 3
Published: over 8 years ago

10.3389/fmolb.2019.00042

Comparative Exploratory Analysis of Intrinsically Disordered Protein Dynamics Using Machine Learning and Network Analytic Methods
Cited by: 24
Author(s): Gianmarc Grazioli, Rachel W. Martin, Carter T. Butts
Software Mentions: 3
Published: over 5 years ago

10.3389/fpsyg.2016.00018

Social Network Analysis and Nutritional Behavior: An Integrated Modeling Approach
Cited by: 15
Author(s): Alistair M. Senior, Mathieu Lihoreau, Jérôme Buhl, David Raubenheimer, Stephen J. Simpson
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0238430

The social network of medical case managers, housing providers, and health department staff in the Ryan White HIV/AIDS Program: A Midwest case study
Cited by: 5
Author(s): Joseph S. Lightner, Jamie Shank, Ryan McBain, Tyler Prochnow
Software Mentions: 3
Published: about 4 years ago

10.3390/v13060970

Phylogenetic Networks and Parameters Inferred from HIV Nucleotide Sequences of High-Risk and General Population Groups in Uganda: Implications for Epidemic Control
Cited by: 5
Author(s): Nicholas Bbosa, Deogratius Ssemwanga, Rebecca N. Nsubuga, Noah Kiwanuka, Bernard S. Bagaya, John M. Kitayimbwa, Alfred Ssekagiri, Gonzalo Yebra, Pontiano Kaleebu, Andrew J. Leigh Brown
Software Mentions: 2
Published: over 3 years ago

10.1098/rspb.2018.2201

Household members do not contact each other at random: implications for infectious disease modelling
Cited by: 27
Author(s): Nele Goeyvaerts, Eva Santermans, Gail E. Potter, Andrea Torneri, Kim Van Kerckhove, Lander Willem, Marc Aerts, Philippe Beutels, Niel Hens
Software Mentions: 2
Published: almost 6 years ago

10.1093/ve/veab011

Test-and-treat coverage and HIV virulence evolution among men who have sex with men
Cited by: 1
Author(s): Sarah E. Stansfield, Joshua T. Herbeck, Geoffrey S. Gottlieb, Neil F. Abernethy, James T. Murphy, John E. Mittler, Steven M. Goodreau
Software Mentions: 2
Published: over 3 years ago

10.2196/publichealth.9357

Development of an Agent-Based Model to Investigate the Impact of HIV Self-Testing Programs on Men Who Have Sex With Men in Atlanta and Seattle
Cited by: 12
Author(s): Wei Luo, David A. Katz, Deven T. Hamilton, Jennie McKenney, Samuel M. Jenness, Steven M. Goodreau, Joanne D. Stekler, Eli S. Rosenberg, Patrick S. Sullivan, Susan Cassels
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0043048

Size Matters: Concurrency and the Epidemic Potential of HIV in Small Networks
Cited by: 39
Author(s): Nicole Bohme Carnegie, Martina Morris
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2016.00380

Experimental Identification of Small Non-Coding RNAs in the Model Marine Bacterium Ruegeria pomeroyi DSS-3
Cited by: 12
Author(s): Adam R. Rivers, Andrew S. Burns, Leong-Keat Chan, Mary Ann Moran
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0253042

Measuring transnational social fields through binational link-tracing sampling
Cited by: 3
Author(s): Marian-Gabriel Hâncean, Miranda J. Lubbers, José Luis Molina
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-72260-8

Network Hamiltonian models reveal pathways to amyloid fibril formation
Cited by: 8
Author(s): Yue Yu, Gianmarc Grazioli, Megha H. Unhelkar, Rachel W. Martin, Carter T. Butts
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0169634

Social network analysis of multi-stakeholder platforms in agricultural research for development: Opportunities and constraints for innovation and scaling
Cited by: 89
Author(s): Frans Hermans, Murat Sartas, Boudy van Schagen, Piet J.A. van Asten, Marc Schut
Software Mentions: 2
Published: over 7 years ago

10.5334/aogh.2961

Partnership and Participation—A Social Network Analysis of the 2017 Global Fund Application Process in the Democratic Republic of the Congo and Uganda
Cited by: 0
Author(s): Katharine D. Shelley, Carol Kamya, Godéfroid Mpanya, Salva Mulongo, Shakilah N Nagasha, Emily Beylerian, Herbert C. Duber, Bernardo Hernández, Allison Osterman, David Phillips, Jessica Shearer, Global Fund Prospective Country Evaluation Ihme
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-89498-5

Cues to gender and racial identity reduce creativity in diverse social networks
Cited by: 1
Author(s): Raiyan Abdul Baten, Richard Ν. Aslin, Gourab Ghoshal, Ehsan Hoque
Software Mentions: 2
Published: over 3 years ago

10.7717/peerj.2707

Dominance relationships in a family pack of captive arctic wolves (<i>Canis lupus arctos</i>): the influence of competition for food, age and sex
Cited by: 26
Author(s): Simona Cafazzo, Martina Lazzaroni, Sarah Marshall-Pescini
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijerph17228370

Network Analysis of the Social Environment Relative to Preference for and Tolerance of Exercise Intensity in CrossFit Gyms
Cited by: 6
Author(s): Megan S. Patterson, Katie M. Heinrich, Tyler Prochnow, Taylor Graves-Boswell, Mandy N. Spadine
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijerph18126197

Friends in Sports: Social Networks in Leisure, School and Social Media
Cited by: 2
Author(s): Håvard Bergesen Dalen, Ørnulf Seippel
Software Mentions: 1
Published: over 3 years ago

10.7448/IAS.19.1.20864

Estimating the impact of universal antiretroviral therapy for HIV serodiscordant couples through home HIV testing: insights from mathematical models
Cited by: 4
Author(s): Sarah T. Roberts, Aditya Khanna, Ruanne V. Barnabas, Steven M. Goodreau, Jared M. Baeten, Connie Celum, Susan Cassels
Software Mentions: 1
Published: over 8 years ago

10.1186/1758-2652-14-12

A decade of modelling research yields considerable evidence for the importance of concurrency: a response to Sawers and Stillwaggon
Cited by: 36
Author(s): Steven M. Goodreau
Software Mentions: 1
Published: over 13 years ago

10.3390/ijerph121012412

Patterns in PARTNERing across Public Health Collaboratives
Cited by: 16
Author(s): Christine A. Bevc, Jessica H. Retrum, Danielle M. Varda
Software Mentions: 1
Published: almost 9 years ago

10.7717/peerj.729

The socio-matrix reloaded: from hierarchy to dominance profile in wild lemurs
Cited by: 22
Author(s): Ivan Norscia, Elisabetta Palagi
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj-cs.269

A survey on exponential random graph models: an application perspective
Cited by: 12
Author(s): Saeid Ghafouri, Seyed Hossein Khasteh
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pcbi.1007561

Large benefits to youth-focused HIV treatment-as-prevention efforts in generalized heterosexual populations: An agent-based simulation model
Cited by: 6
Author(s): John E. Mittler, James T. Murphy, Sarah E. Stansfield, Kathryn Peebles, Geoffrey S. Gottlieb, Neil F. Abernethy, Molly C. Reid, Steven M. Goodreau
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0030710

Can Geographical Factors Determine the Choices of Farmers in the Ethiopian Highlands to Trade in Livestock Markets?
Cited by: 9
Author(s): Angel Ortiz‐Peláez, Getaneh Ashenafi, François Roger, Agnès Waret-Szkuta
Software Mentions: 1
Published: over 12 years ago

10.1136/bmjopen-2018-028126

Social support, social network and salt-reduction behaviours in children: a substudy of the School-EduSalt trial
Cited by: 7
Author(s): Yuan Ma, Xiping Feng, Jun Ma, Feng J He, Hai Jun Wang, Jing Zhang, Weixin Xie, Tao Wu, Yunjian Yin, Jun Yuan, Graham A. MacGregor, Yangfeng Wu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0020039

Exponential Random Graph Modeling for Complex Brain Networks
Cited by: 118
Author(s): Sean L. Simpson, Satoru Hayasaka, Paul J. Laurienti
Software Mentions: 1
Published: over 13 years ago

10.2196/jmir.1982

Applying Social Network Analysis to Understand the Knowledge Sharing Behaviour of Practitioners in a Clinical Online Discussion Forum
Cited by: 66
Author(s): Samuel Alan Stewart, Syed Sibte Raza Abidi
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0129253

Spatial-Temporal Dynamics of High-Resolution Animal Networks: What Can We Learn from Domestic Animals?
Cited by: 17
Author(s): Shi Chen, Amiyaal Ilany, Brad J. White, Michael W. Sanderson, Cristina Lanzas
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0245712

How inter-state amity and animosity complement migration networks to drive refugee flows: A multi-layer network analysis, 1991–2016
Cited by: 7
Author(s): Justin Schon, Jeffrey C. Johnson
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0197716

A network analysis of the propagation of evidence regarding the effectiveness of fat-controlled diets in the secondary prevention of coronary heart disease (CHD): Selective citation in reviews
Cited by: 11
Author(s): Rhodri Leng
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0142181

A Simulation Study Comparing Epidemic Dynamics on Exponential Random Graph and Edge-Triangle Configuration Type Contact Network Models
Cited by: 7
Author(s): David A. Rolls, Peng Wang, Emma S. McBryde, Philippa Pattison, Garry Robins
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0211860

Cultural transmission modes of music sampling traditions remain stable despite delocalization in the digital age
Cited by: 14
Author(s): Mason Youngblood
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0134814

Wireless Monitoring of Changes in Crew Relations during Long-Duration Mission Simulation
Cited by: 16
Author(s): Bernd Johannes, Alexej S. Sitev, A. G. Vinokhodova, V.P. Salnitski, Eduard G. Savchenko, Anna Artyukhova, Yuri Bubeev, Б. В. Моруков, Carole Tafforin, Mathias Basner, David F. Dinges, Jörn Rittweger
Software Mentions: 1
Published: about 9 years ago

10.1093/emph/eoz012

The state of evolutionary medicine in undergraduate education
Cited by: 11
Author(s): Daniel Z. Grunspan, Karla T. Moeller, Randolph M. Nesse, Sara E. Brownell
Software Mentions: 1
Published: over 5 years ago

10.3389/fvets.2017.00027

Prediction of Pig Trade Movements in Different European Production Systems Using Exponential Random Graph Models
Cited by: 16
Author(s): Anne A. Relun, Grosbois Vladimir, Tsviatko Alexandrov, José Manuel Sánchez‐Vizcaíno, Agnès Waret-Szkuta, Sophie Molia, Éric Etter, Beatriz Martínez‐López
Software Mentions: 1
Published: over 7 years ago

10.1186/s12889-020-09589-2

Giving syphilis and gonorrhea to friends: using in-person friendship networks to find additional cases of gonorrhea and syphilis
Cited by: 7
Author(s): Janet E. Rosenbaum, Jacky M. Jennings, Jonathan M. Ellen, Laurel Borkovic, Jo Ann Scott, Charleen Wylie, Anne Rompalo
Software Mentions: 1
Published: almost 4 years ago

10.3390/healthcare9081041

The Expansion Mechanism of the Cooperative Networks of Supply Support Organizations in a Public Health Emergency
Cited by: 5
Author(s): Chenxi Lian, Jian Wang, Jida Liu
Software Mentions: 1
Published: about 3 years ago

10.21203/rs.3.rs-22332/v2

Giving syphilis and gonorrhea to friends: Using in-person friendship networks to find additional cases of gonorrhea and syphilis
Cited by: 0
Author(s): Janet E. Rosenbaum, Jacky M. Jennings, Jonathan M. Ellen, Laurel Borkovic, Jo-Ann Scott, Charleen Wylie, Anne Rompalo
Software Mentions: 1
Published: about 4 years ago

10.1186/s12909-019-1522-1

Learning relationships in community-based service-learning: a social network analysis
Cited by: 20
Author(s): Fabian Held, Chris Roberts, Michele Daly, Claire Brunero
Software Mentions: 1
Published: over 5 years ago

10.1007/s41109-017-0036-1

JANUS: A hypothesis-driven Bayesian approach for understanding edge formation in attributed multigraphs
Cited by: 4
Author(s): Lisette Espín-Noboa, Florian Lemmerich, Markus Strohmaier, Philipp Singer
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-78224-2

Dynamics of social network emergence explain network evolution
Cited by: 2
Author(s): C. D. Pomeroy, Robert M. Bond, Peter J. Mucha, Skyler J. Cranmer
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-87802-x

The construction and visualization of the transmission networks for COVID-19: A potential solution for contact tracing and assessments of epidemics
Cited by: 12
Author(s): Caiying Luo, Yue Ma, Jiang Pei-hua, Tao Zhang, Fei Yin
Software Mentions: 1
Published: over 3 years ago

10.1093/hmg/ddab012

Multi-influential genetic interactions alter behaviour and cognition through six main biological cascades in Down syndrome mouse models
Cited by: 18
Author(s): Arnaud Duchon, Maria del Mar Muñiz Moreno, Sandra Martín Lorenzo, Marcia Priscilla Silva de Souza, Claire Chevalier, Valérie Nalesso, Hamid Méziane, Paulo Loureiro de Sousa, Vincent Noblet, Jean‐Paul Armspach, Véronique Brault, Yann Hérault
Software Mentions: 1
Published: over 3 years ago

10.2196/24618

Development of Social Support Networks by Patients With Depression Through Online Health Communities: Social Network Analysis
Cited by: 10
Author(s): Yingjie Lu, Shuwen Luo, Xuan Liu
Software Mentions: 1
Published: over 3 years ago

Projects: cran: statnet

Papers Mentioning statnet 66