cran: randomForest | Projects | Ecosyste.ms: Papers

10.2196/16077

Personalized Web-Based Cognitive Rehabilitation Treatments for Patients with Traumatic Brain Injury: Cluster Analysis
Cited by: 11
Author(s): Alejandro García-Rudolph, Alberto García-Molina, Eloy Opisso, Jose Maria Tormos Muñoz
Software Mentions: 5
Published: about 4 years ago

10.1002/jev2.12150

Stroma‐derived extracellular vesicle mRNA signatures inform histological nature of prostate cancer
Cited by: 6
Author(s): Alex P. Shephard, Peter Giles, Mariama Mbengue, Amr Alraies, Lisa K. Spary, Howard Kynaston, Mark Gurney, Juan Manuel Falcón‐Pérez, Félix Royo, Zsuzsanna Tabi, Dimitris Parthimos, Rachel J. Errington, Aled Clayton, Jason P. Webber
Software Mentions: 5
Published: about 3 years ago

10.1186/s13073-021-00952-5

Distinct transcriptional programs stratify ovarian cancer cell lines into the five major histological subtypes
Cited by: 39
Author(s): Bethany Barnes, Louisa Nelson, Anthony Tighe, George J. Burghel, I‐Hsuan Lin, Sudha Desai, Joanne C. McGrail, Robert D. Morgan, Stephen S. Taylor
Software Mentions: 5
Published: about 3 years ago

10.2196/27977

Factors to Effective Telemedicine Visits During the COVID-19 Pandemic: Cohort Study
Cited by: 7
Author(s): Kristin N Gmunder, Jose W. Ruiz, Dido Franceschi, Maritza Suarez
Software Mentions: 5
Published: about 3 years ago

10.1186/s13059-021-02463-3

Deterministic transition of enterotypes shapes the infant gut microbiome at an early age
Cited by: 50
Author(s): Liwen Xiao, Jinfeng Wang, Jiayong Zheng, Xiaoqing Li, Fangqing Zhao
Software Mentions: 5
Published: about 3 years ago

10.3390/bs10030062

Random Forest Classification of Alcohol Use Disorder Using EEG Source Functional Connectivity, Neuropsychological Functioning, and Impulsivity Measures
Cited by: 15
Author(s): Chella Kamarajan, Babak A. Ardekani, Ashwini K. Pandey, David B. Chorlian, Sivan Kinreich, Gayathri Pandey, Jacquelyn L. Meyers, Jian Zhang, Weipeng Kuang, Arthur T. Stimus, Bernice Porjesz
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.50601

Cell-type-specific control of basolateral amygdala neuronal circuits via entorhinal cortex-driven feedforward inhibition
Cited by: 15
Author(s): Eartha Mae Guthman, Joshua D. Garcia, Ming Ma, Philip Chu, Serapio M. Baca, Katharine R. Smith, Diego Restrepo, Molly M. Huntsman
Software Mentions: 5
Published: almost 5 years ago

10.1002/ece3.6456

Human‐geographic effects on variations in the population genetics of<i>Sinotaia quadrata</i>(Gastropoda: Viviparidae) that historically migrated from continental East Asia to Japan
Cited by: 6
Author(s): Bin Ye, Takahito Saito, Toshio Hirano, Zhengzhong Dong, Van Tu, Satoshi Chiba
Software Mentions: 5
Published: over 4 years ago

10.1186/s13007-021-00796-5

Improving the estimation of alpine grassland fractional vegetation cover using optimized algorithms and multi-dimensional features
Cited by: 12
Author(s): Xingchen Lin, Jianjun Chen, Peiqing Lou, Shuai Yi, Yu Qin, Haotian You, Xiaofei Han
Software Mentions: 5
Published: about 3 years ago

10.1128/mSystems.00292-20

High-Resolution Longitudinal Dynamics of the Cystic Fibrosis Sputum Microbiome and Metabolome through Antibiotic Therapy
Cited by: 40
Author(s): Ruma Raghuvanshi, Karla Vasco, Yoshiki Vázquez-Baeza, Lingjing Jiang, James T. Morton, Danxun Li, Antonio González, Lindsay DeRight Goldasich, Gregory Humphrey, Gail Ackermann, Austin D. Swafford, Douglas Conrad, Rob Knight, Pieter C. Dorrestein, Robert A. Quinn
Software Mentions: 5
Published: over 4 years ago

10.1128/mSphere.00534-20

The Fungal Microbiome Is an Important Component of Vineyard Ecosystems and Correlates with Regional Distinctiveness of Wine
Cited by: 47
Author(s): Di Liu, Qinglin Chen, Pangzhen Zhang, Deli Chen, Kate Howell
Software Mentions: 5
Published: about 4 years ago

10.1128/mSphere.01263-20

Genes Influencing Phage Host Range in Staphylococcus aureus on a Species-Wide Scale
Cited by: 17
Author(s): Abraham G Moller, Kyle Winston, Sang Yong Ji, Junting Wang, Michelle N. Hargita Davis, Claudia Solís-Lemus, Timothy D. Read
Software Mentions: 5
Published: over 3 years ago

10.1186/gb-2013-14-10-r112

Genome-wide analysis of condensin binding in Caenorhabditis elegans
Cited by: 74
Author(s): Anna-Lena Kranz, Chenyu Jiao, Lara Winterkorn, Sarah Elizabeth Albritton, Maxwell Kramer, Sevinç Ercan
Software Mentions: 5
Published: almost 12 years ago

10.1128/mSystems.00477-21

Comprehensive Cultivation of the Swine Gut Microbiome Reveals High Bacterial Diversity and Guides Bacterial Isolation in Pigs
Cited by: 11
Author(s): Xiaofan Wang, Samantha Howe, Xiaoyuan Wei, Feilong Deng, Tsung‐Ting Tsai, Jianmin Chai, Yingping Xiao, Hua Yang, C. V. Maxwell, Ying Li, Jiangchao Zhao
Software Mentions: 5
Published: about 3 years ago

10.7717/peerj.3724

Validation and description of two new north-western Australian Rainbow skinks with multispecies coalescent methods and morphology
Cited by: 11
Author(s): Ana C. Afonso Silva, Natali Santos, Huw A. Ogilvie, Craig Moritz
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0078316

Deep Sequencing Identification of Novel Glucocorticoid-Responsive miRNAs in Apoptotic Primary Lymphocytes
Cited by: 15
Author(s): Lydia Smith, Arpit Tandon, Ruchir Shah, Deepak Mav, Alyson B. Scoltock, John A. Cidlowski
Software Mentions: 5
Published: about 11 years ago

10.7717/peerj.8286

Determining hypertensive patients’ beliefs towards medication and associations with medication adherence using machine learning methods
Cited by: 14
Author(s): Firdaus Aziz, Sorayya Malek, Adliah Mhd Ali, M. Wong, Mogeeb A. A. Mosleh, Pozi Milow
Software Mentions: 5
Published: over 4 years ago

10.1002/ece3.7150

Contrasting patterns in the occurrence and biomass centers of gravity among fish and macroinvertebrates in a continental shelf ecosystem
Cited by: 10
Author(s): Kevin D. Friedland, Szymon Smoliński, Kisei R. Tanaka
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41398-020-0781-2

Machine learning classification of ADHD and HC by multimodal serotonergic data
Cited by: 31
Author(s): Alexander Kautzky, Thomas Vanicek, Cécile Philippe, Georg S. Kranz, Wolfgang Wadsak, Markus Mitterhauser, Andréas Hartmann, Andreas Hahn, Marcus Hacker, Dan Rujescu, Siegfried Kasper, Rupert Lanzenberger
Software Mentions: 5
Published: over 4 years ago

10.1186/s12896-019-0535-5

VARSCOT: variant-aware detection and scoring enables sensitive and personalized off-target detection for CRISPR-Cas9
Cited by: 6
Author(s): Laurence O.W. Wilson, Sara Hetzel, Christopher Pockrandt, Knut Reinert, Denis C. Bauer
Software Mentions: 5
Published: over 5 years ago

10.3390/s21092899

Non-Destructive Detection Pilot Study of Vegetable Organic Residues Using VNIR Hyperspectral Imaging and Deep Learning Techniques
Cited by: 6
Author(s): Yong Weon Seo, Giyoung Kim, Jongguk Lim, Ahyeong Lee, Balgeum Kim, Jae-Kyung Jang, Changyeun Mo, Moon S. Kim
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0251800

Comparison of machine-learning methodologies for accurate diagnosis of sepsis using microarray gene expression data
Cited by: 5
Author(s): Dominik Schaack, Markus A. Weigand, Florian Uhle
Software Mentions: 5
Published: over 3 years ago

10.7717/peerj.1979

Origin of aromatase inhibitory activity via proteochemometric modeling
Cited by: 16
Author(s): Saw Simeon, Ola Spjuth, Maris Lapins, Sunanta Nabu, Nuttapat Anuwongcharoen, Virapong Prachayasittikul, Jarl E. S. Wikberg, Chanin Nantasenamat
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.11230

Ectomycorrhizal fungal communities associated with <i>Larix gemelinii</i> Rupr. in the Great Khingan Mountains, China
Cited by: 2
Author(s): Yong-Long Wang, Ye Zhao, Ying Xu, MA Jian-jun, Busayo Joshua Babalola, Yida Fan
Software Mentions: 5
Published: over 3 years ago

10.3389/fpls.2020.570871

Genomic Selection for Prediction of Fruit-Related Traits in Pepper (Capsicum spp.)
Cited by: 15
Author(s): Ju-Pyo Hong, Na-Young Ro, Hea-Young Lee, Geon Woo Kim, Jae-Hoon Kwon, Eiji Yamamoto, Byoung-Cheorl Kang
Software Mentions: 5
Published: about 4 years ago

10.7717/peerj.7841

Evaluating remote sensing datasets and machine learning algorithms for mapping plantations and successional forests in Phnom Kulen National Park of Cambodia
Cited by: 8
Author(s): Minerva Singh, Damian Evans, Jean-Baptiste Chevance, Boun Suy Tan, Nicholas Wiggins, Leaksmy Kong, Sakada Sakhoeun
Software Mentions: 5
Published: about 5 years ago

10.1186/s12915-020-00835-y

Machine learning approaches identify male body size as the most accurate predictor of species richness
Cited by: 4
Author(s): Klemen Čandek, Urška Pristovšek Čandek, Matjaž Kuntner
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-021-89969-9

Data-science based analysis of perceptual spaces of odors in olfactory loss
Cited by: 2
Author(s): Jörn Lötsch, Alfred Ultsch, Antje Hähner, Vivien Willgeroth, Moustafa Bensafi, Andrea Zaliani, Thomas Hummel
Software Mentions: 5
Published: over 3 years ago

10.3389/fpls.2018.01322

Potential of Genome-Wide Studies in Unrelated Plus Trees of a Coniferous Species, Cryptomeria japonica (Japanese Cedar)
Cited by: 13
Author(s): Yuichiro Hiraoka, Eitaro Fukatsu, Kentaro Mishima, Tomonori Hirao, Kenjiro Teshima, Miho Tamura, Miyoko Tsubomura, Taiichi Iki, Masayuki Kurita, Makoto Takahashi, Atsushi Watanabe
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-021-87779-7

Identification of genes associated with altered gene expression and m6A profiles during hypoxia using tensor decomposition based unsupervised feature extraction
Cited by: 10
Author(s): Sanjiban Sekhar Roy, Y-h. Taguchi
Software Mentions: 5
Published: over 3 years ago

10.1093/conphys/coaa090

Different drivers, common mechanism; the distribution of a reef fish is restricted by local-scale oxygen and temperature constraints on aerobic metabolism
Cited by: 12
Author(s): Murray I. Duncan, Nicola C. James, Warren M. Potts, Amanda E. Bates
Software Mentions: 5
Published: almost 5 years ago

10.3390/v12101158

Identifying Spanish Areas at More Risk of Monthly BTV Transmission with a Basic Reproduction Number Approach
Cited by: 1
Author(s): Cecilia Aguilar-Vega, Jaime Bosch, Eduardo Fernández-Carrión, Javier Lucientes, José Manuel Sánchez‐Vizcaíno
Software Mentions: 5
Published: about 4 years ago

10.1186/s12874-016-0261-9

A comparative study: classification vs. user-based collaborative filtering for clinical prediction
Cited by: 14
Author(s): Hao Fang, Rachael Hageman Blair
Software Mentions: 5
Published: almost 8 years ago

10.1371/journal.pone.0006287

The Validation and Assessment of Machine Learning: A Game of Prediction from High-Dimensional Data
Cited by: 25
Author(s): Tune H. Pers, Anders Albrechtsen, Claus Holst, Thorkild I. A. Sørensen, Thomas Alexander Gerds
Software Mentions: 5
Published: over 15 years ago

10.1016/j.ebiom.2020.103147

Longitudinal plasma protein profiling of newly diagnosed type 2 diabetes
Cited by: 12
Author(s): Anders Gummesson, Elias Björnson, Linn Fagerberg, Wen Zhong, Abdellah Tebani, Fredrik Edfors, Caroline Schmidt, Annika Lundqvist, Martin Adiels, Fredrik Bäckhed, Jochen M. Schwenk, Per‐Anders Jansson, Mathias Uhlén, Göran Bergström
Software Mentions: 5
Published: almost 4 years ago

10.1038/s42003-018-0041-7

Ecology determines how low antibiotic concentration impacts community composition and horizontal transfer of resistance genes
Cited by: 65
Author(s): Johannes Cairns, Lasse Ruokolainen, Jenni Hultman, Manu Tamminen, Marko Virta, Teppo Hiltunen
Software Mentions: 5
Published: over 6 years ago

10.1186/1471-2288-14-99

Detection of independent associations in a large epidemiologic dataset: a comparison of random forests, boosted regression trees, conventional and penalized logistic regression for identifying independent factors associated with H1N1pdm influenza infections
Cited by: 33
Author(s): Yohann Mansiaux, Fabrice Carrat
Software Mentions: 5
Published: about 10 years ago

10.3390/e23091210

Mood Disorder Detection in Adolescents by Classification Trees, Random Forests and XGBoost in Presence of Missing Data
Cited by: 4
Author(s): E Turska, Szymon Jurga, Jarosław Piskorski
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0231999

The genomic landscape of metastatic breast cancer: Insights from 11,000 tumors
Cited by: 28
Author(s): Jacob Rinaldi, Ethan S. Sokol, Ryan J. Hartmaier, Sally E. Trabucco, Garrett M. Frampton, Michael E. Goldberg, Lee A. Albacker, Anneleen Daemen, Gerard Manning
Software Mentions: 5
Published: over 4 years ago

10.1186/s40462-014-0026-1

Adding structure to land cover – using fractional cover to study animal habitat use
Cited by: 8
Author(s): Mirjana Bevanda, Ned Horning, Björn Reineking, Marco Heurich, Martin Wegmann, Jan Mueller
Software Mentions: 5
Published: almost 10 years ago

10.15252/msb.20177728

The landscape of human mutually exclusive splicing
Cited by: 50
Author(s): Klas Hatje, Raza-Ur Rahman, Ramón Vidal, Dominic Simm, Björn Hammesfahr, V. Bansal, Ashish Rajput, Michel‐Edwar Mickael, Ting Sun, Stefan Bonn, Martin Kollmar
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-020-68891-6

Structure and co-occurrence patterns of bacterial communities associated with white faeces disease outbreaks in Pacific white-leg shrimp Penaeus vannamei aquaculture
Cited by: 27
Author(s): Yustian Rovi Alfiansah, Sonja Peters, Jens Harder, Christiane Hassenrück, Astrid Gärdes
Software Mentions: 5
Published: over 4 years ago

10.15252/msb.20145123

Natural genetic variation impacts expression levels of coding, non‐coding, and antisense transcripts in fission yeast
Cited by: 61
Author(s): Mathieu Clément-Ziza, Xavi Marsellach, Sandra Codlin, Manos A. Papadakis, Susanne Reinhardt, María Rodríguez-López, Stuart Martin, Samuel Marguerat, Alexander Schmidt, Eun‐Hye Lee, Christopher T. Workman, Jürg Bähler, Andreas Beyer
Software Mentions: 5
Published: about 10 years ago

10.1186/1471-2288-11-129

Imputation of missing values of tumour stage in population-based cancer registration
Cited by: 81
Author(s): Nora Eisemann, Annika Waldmann, Alexander Katalinic
Software Mentions: 5
Published: about 13 years ago

10.1186/s12911-020-01271-2

Using machine learning methods to predict in-hospital mortality of sepsis patients in the ICU
Cited by: 64
Author(s): Guilan Kong, Ke Lin, Yonghua Hu
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0205427

Identification of gene expression predictors of occupational benzene exposure
Cited by: 11
Author(s): Courtney Schiffman, Cliona M. McHale, Alan Hubbard, Luoping Zhang, Reuben Thomas, Roel Vermeulen, Guilan Li, Min Shen, Stephen M. Rappaport, Shu Yin, Qing Lan, Martyn T. Smith, Nathaniel Rothman
Software Mentions: 5
Published: about 6 years ago

10.3389/fnins.2020.00751

A Radiomics Approach to Predicting Parkinson’s Disease by Incorporating Whole-Brain Functional Activity and Gray Matter Structure
Cited by: 32
Author(s): Xuan Cao, Xiao Wang, Chen Xue, Shaojun Zhang, Qingling Huang, Weiguo Liu
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0220881

Comparison of catchment scale 3D and 2.5D modelling of soil organic carbon stocks in Jiangxi Province, PR China
Cited by: 17
Author(s): Tobias Rentschler, Philipp Gries, Thorsten Behrens, Helge Bruelheide, Peter Kühn, Steffen Seitz, Xuezheng Shi, Stefan Trogisch, Thomas Scholten, Karsten Schmidt
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-53451-4

Machine Learning Approach for Prescriptive Plant Breeding
Cited by: 51
Author(s): Kyle A. Parmley, R. A. Higgins, Baskar Ganapathysubramanian, Soumik Sarkar, Asheesh K. Singh
Software Mentions: 5
Published: about 5 years ago

10.1186/s12911-019-0747-6

Importance of medical data preprocessing in predictive modeling and risk factor discovery for the frailty syndrome
Cited by: 39
Author(s): Andreas Philipp Hassler, Ernestina Menasalvas, Francisco José García‐García, Leocadio Rodríguez‐Mañas, Andreas Holzinger
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13229-020-00359-w

IGF-1 treatment causes unique transcriptional response in neurons from individuals with idiopathic autism
Cited by: 17
Author(s): Sara B. Linker, Ana Paula Mendes, Maria C. Marchetto
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0232313

Suitability of resampled multispectral datasets for mapping flowering plants in the Kenyan savannah
Cited by: 0
Author(s): David Masereti Makori, Elfatih M. Abdel‐Rahman, Tobias Landmann, Onisimo Mutanga, John Odindi, Evelyn Masereti Nguku, Henri E. Z. Tonnang, Satish Raina
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-019-57218-9

Immune gene signatures for predicting durable clinical benefit of anti-PD-1 immunotherapy in patients with non-small cell lung cancer
Cited by: 109
Author(s): Sohyun Hwang, Ah-Young Kwon, Jooyeon Jeong, Sewha Kim, Haeyoun Kang, Joon-Suk Park, Joo-Hang Kim, Ok Jin Han, Sun Min Lim, Hee Jung An
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-020-71176-7

Chemical signatures of femoral pore secretions in two syntopic but reproductively isolated species of Galápagos land iguanas (Conolophus marthae and C. subcristatus)
Cited by: 4
Author(s): Giuliano Colosimo, Gabriele Di Marco, Alessia D’Agostino, Angelo Gismondi, Carlos Vera, Glenn P. Gerber, Michele Scardi, Antonella Canini, Gabriele Gentile
Software Mentions: 5
Published: about 4 years ago

10.3390/microorganisms8111713

Genetic Variation and Preliminary Indications of Divergent Niche Adaptation in Cryptic Clade II of Escherichia
Cited by: 3
Author(s): Zhi Yong Shen, Xiu Pei Koh, Yan Yu, S. S. Lau
Software Mentions: 5
Published: about 4 years ago

10.3390/cancers13092000

Lipidomics as a Diagnostic Tool for Prostate Cancer
Cited by: 21
Author(s): Magdalena Buszewska-Forajta, Paweł Pomastowski, Fernanda Monedeiro, Justyna Walczak-Skierska, Marcin Markuszewski, Marcin Matuszewski, Michał J. Markuszewski
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-018-29320-x

Endocervical and vaginal microbiota in South African adolescents with asymptomatic Chlamydia trachomatis infection
Cited by: 35
Author(s): Christina Balle, Katie Lennard, Smritee Dabee, Shaun Barnabas, Shameem Z. Jaumdally, Melanie A. Gasper, Venessa Maseko, Zizipho Z. A. Mbulawa, Anna‐Lise Williamson, Linda‐Gail Bekker, David A. Lewis, Jo‐Ann S. Passmore, Heather B. Jaspan
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2019.03000

Machine Learning Approach for Candida albicans Fluconazole Resistance Detection Using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry
Cited by: 26
Author(s): Margot Delavy, Lorenzo Cerutti, Antony Croxatto, Guy Prod’hom, Dominique Sanglard, Gilbert Greub, Alix T. Coste
Software Mentions: 5
Published: almost 5 years ago

10.1186/1471-2105-11-523

Class prediction for high-dimensional class-imbalanced data
Cited by: 169
Author(s): Rok Blagus, Lara Lusa
Software Mentions: 5
Published: about 14 years ago

10.1186/s40168-018-0511-7

Disruption of maternal gut microbiota during gestation alters offspring microbiota and immunity
Cited by: 96
Author(s): Donald D. Nyangahu, Katie Lennard, Bryan P. Brown, Matthew Darby, Jerome Wendoh, Enock Havyarimana, Peter Smith, James Butcher, Alain Stintzi, Nicola Mulder, William G. C. Horsnell, Heather B. Jaspan
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-017-15644-7

Limited evidence of declining growth among moisture-limited black and white spruce in interior Alaska
Cited by: 29
Author(s): Patrick F. Sullivan, Robert R. Pattison, Annalis H. Brownlee, Sean M. P. Cahoon, Teresa N. Hollingsworth
Software Mentions: 5
Published: about 7 years ago

10.1186/s40168-020-00858-1

Using soil bacterial communities to predict physico-chemical variables and soil quality
Cited by: 113
Author(s): Syrie M. Hermans, Hannah Buckley, Bradley S. Case, Fiona Curran-Cournane, Mykel R. Taylor, Gavin Lear
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-018-25679-z

A machine learning model with human cognitive biases capable of learning from small and biased datasets
Cited by: 38
Author(s): Hidetaka Taniguchi, Hiroshi Satō, Tomohiro Shirakawa
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-019-44338-5

In-feed bacitracin methylene disalicylate modulates the turkey microbiota and metabolome in a dose-dependent manner
Cited by: 25
Author(s): Timothy A. Johnson, Matthew J. Sylte, Torey Looft
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-019-0651-4

Gut microbiota in HIV–pneumonia patients is related to peripheral CD4 counts, lung microbiota, and in vitro macrophage dysfunction
Cited by: 23
Author(s): Meera K. Shenoy, Douglas Fadrosh, David L. Lin, William Worodria, Patrick Byanyima, Emmanuel Musisi, Sylvia Kaswabuli, Josephine Zawedde, Ingvar Sanyu, Emily Chang, Serena Fong, Kathryn McCauley, J. Lucian Davis, Laurence Huang, Susan V. Lynch
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-017-03232-8

Using variable importance measures to identify a small set of SNPs to predict heading date in perennial ryegrass
Cited by: 14
Author(s): Stephen Byrne, Philip G. Conaghan, Susanne Barth, Sai Krishna Arojju, Michael D. Casler, Thibauld Michel, Janaki Velmurugan, Dan Milbourne
Software Mentions: 5
Published: over 7 years ago

10.1186/s40168-019-0758-7

Microbiome of vineyard soils is shaped by geography and management
Cited by: 89
Author(s): E. Coller, Alessandro Cestaro, Roberto Zanzotti, D. Bertoldi, Massimo Pindo, Simone Larger, Davide Albanese, E. Mescalchin, Claudio Donati
Software Mentions: 5
Published: about 5 years ago

10.1186/s40168-019-0622-9

A longitudinal assessment of host-microbe-parasite interactions resolves the zebrafish gut microbiome’s link to Pseudocapillaria tomentosa infection and pathology
Cited by: 62
Author(s): Christopher A. Gaulke, Maurício Laterça Martins, Virginia Watral, Ian R. Humphreys, Sean Spagnoli, Michael L. Kent, Thomas J. Sharpton
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0187344

Assessing risk of fibrosis progression and liver-related clinical outcomes among patients with both early stage and advanced chronic hepatitis C
Cited by: 23
Author(s): Monica A. Konerman, Dongxia Lu, Yiwei Zhang, Mary Thomson, Ji Zhu, Aashesh Verma, Boang Liu, Nizar Talaat, Ulysses Balis, Peter Higgins, Anna S. Lok, Akbar K. Waljee
Software Mentions: 5
Published: about 7 years ago

10.1186/s40168-019-0775-6

Root ethylene mediates rhizosphere microbial community reconstruction when chemically detecting cyanide produced by neighbouring plants
Cited by: 89
Author(s): Yan Chen, Michael Bonkowski, Yi Shen, Bryan S. Griffiths, Yuji Jiang, Xiaoyue Wang, Bo Sun
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0144820

CloudForest: A Scalable and Efficient Random Forest Implementation for Biological Data
Cited by: 2
Author(s): Ryan Bressler, Richard Kreisberg, Brady Bernard, John E. Niederhuber, Joseph G. Vockley, Ilya Shmulevich, Theo Knijnenburg
Software Mentions: 5
Published: almost 9 years ago

10.3389/fmed.2021.697649

The Effect of Individual Musculoskeletal Conditions on Depression: Updated Insights From an Irish Longitudinal Study on Aging
Cited by: 8
Author(s): Wenyi Jin, Zilin Liu, Yubiao Zhang, Zhifei Che, Mingyong Gao
Software Mentions: 5
Published: about 3 years ago

10.3389/fmed.2020.00475

Impact of Gut Microbiome on Hypertensive Patients With Low-Salt Intake: Shika Study Results
Cited by: 7
Author(s): Satoshi Nagase, Shigehiro Karashima, Hiromasa Tsujiguchi, Hirohito Tsuboi, Sakae Miyagi, Mitsuhiro Kometani, Daisuke Aono, Takuya Higashitani, Masashi Demura, Hiroyuki Sakakibara, Akihiro Yoshida, Akinori Hara, Hiroyuki Nakamura, Yoshiyu Takeda, Hidetaka Nambo, Takashi Yoneda, Shigefumi Okamoto
Software Mentions: 5
Published: about 4 years ago

10.1038/srep31587

Hepatic and serum lipid signatures specific to nonalcoholic steatohepatitis in murine models
Cited by: 33
Author(s): Franck Chiappini, Christophe Desterke, Justine Bertrand‐Michel, Catherine Guettier, François Le Naour
Software Mentions: 5
Published: over 8 years ago

10.1038/srep31479

Pancreas-enriched miRNAs are altered in the circulation of subjects with diabetes: a pilot cross-sectional study
Cited by: 131
Author(s): Attila A. Seyhan, Yury O. Nunez Lopez, Hui Xie, Fanchao Yi, Clayton E. Mathews, Magdalena Pasarica, Richard E. Pratley
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0151917

Classification of Promoters Based on the Combination of Core Promoter Elements Exhibits Different Histone Modification Patterns
Cited by: 9
Author(s): Yayoi Natsume-Kitatani, Hiroshi Mamitsuka
Software Mentions: 5
Published: over 8 years ago

10.1038/srep37646

Exploring the molecular basis of age-related disease comorbidities using a multi-omics graphical model
Cited by: 45
Author(s): Jonas Zierer, Tess Pallister, Pei-Chien Tsai, Jan Krumsiek, Jordana T. Bell, Gordan Lauc, Tim D. Spector, Cristina Menni, Gabi Kastenmüller
Software Mentions: 5
Published: almost 8 years ago

10.1038/srep41393

Tree cover in Central Africa: determinants and sensitivity under contrasted scenarios of global change
Cited by: 11
Author(s): Julie C. Aleman, Olivier Blarquez, Sylvie Gourlet‐Fleury, Laurent Brémond, Charly Favier
Software Mentions: 5
Published: almost 8 years ago

10.1007/s11306-018-1419-8

Identification of a urine metabolite constellation characteristic for kidney allograft rejection
Cited by: 18
Author(s): Miriam C. Banas, Sindy Neumann, Johannes Eiglsperger, Eric Schiffer, Franz Josef Putz, Simone Reichelt-Wurm, Bernhard K. Krämer, Philipp Pagel, Bernhard Banas
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0251963

Factors indicating intention to vaccinate with a COVID-19 vaccine among older U.S. adults
Cited by: 55
Author(s): Janeta Nikolovski, Martin Koldijk, Gerrit Jan Weverling, John A. Spertus, Mintu P. Turakhia, Leslie A. Saxon, C. Michael Gibson, John Whang, Troy C. Sarich, Robert A. Zambon, Nnamdi Ezeanochie, Jennifer Turgiss, Robyn Jones, Jeff Stoddard, Paul R. Burton, Ann Marie Návar
Software Mentions: 5
Published: over 3 years ago

10.1186/1471-2164-15-S10-S1

AucPR: An AUC-based approach using penalized regression for disease prediction with high-dimensional omics data
Cited by: 6
Author(s): Wenbao Yu, Taesung Park
Software Mentions: 5
Published: almost 10 years ago

10.3389/fgene.2021.607817

Multi-Omics Data Fusion for Cancer Molecular Subtyping Using Sparse Canonical Correlation Analysis
Cited by: 8
Author(s): Qi Lin, Wei Wang, Tan Wu, Lina Zhu, Lingli He, Xin Wang
Software Mentions: 5
Published: over 3 years ago

10.1186/s12859-020-03633-z

PDXGEM: patient-derived tumor xenograft-based gene expression model for predicting clinical response to anticancer therapy in cancer patients
Cited by: 10
Author(s): Young‐Chul Kim, Daewon Kim, Biwei Cao, Rodrigo Carvajal, Minjung Kim
Software Mentions: 5
Published: over 4 years ago

10.3389/fgene.2020.00214

The Identification of Metal Ion Ligand-Binding Residues by Adding the Reclassified Relative Solvent Accessibility
Cited by: 5
Author(s): Xiuzhen Hu, Zhenxing Feng, Xiaojin Zhang, Liu Liu, Shan Wang
Software Mentions: 5
Published: over 4 years ago

10.3390/life11060588

Impact TMPRSS2–ERG Molecular Subtype on Prostate Cancer Recurrence
Cited by: 7
Author(s): Anastasiya A. Kobelyatskaya, Elena A. Pudova, Anastasiya V. Snezhkina, Maria Fedorova, Vladislav Pavlov, Zulfiya G. Guvatova, М. В. Савватеева, Nataliya V. Melnikova, Alexey A. Dmitriev, Trofimov D.Yu. Trofimov, Г. Т. Сухих, K. M. Nyushko, B. Ya. Alekseev, Sergey V. Razin, George S. Krasnov, Anna V. Kudryavtseva
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0257343

Analysis of potential genetic biomarkers and molecular mechanism of smoking-related postmenopausal osteoporosis using weighted gene co-expression network analysis and machine learning
Cited by: 7
Author(s): Shaoshuo Li, Baixing Chen, Hao Chen, Zhen Hua, Yang Shao, Heng Yin, Jianwei Wang
Software Mentions: 5
Published: about 3 years ago

10.1186/s12859-016-1228-x

The parameter sensitivity of random forests
Cited by: 91
Author(s): Barbara Huang, Paul C. Boutros
Software Mentions: 5
Published: about 8 years ago

10.1098/rsos.201795

Understanding spatial patterns in rape reporting delays
Cited by: 5
Author(s): Konstantin Klemmer, Daniel B. Neill, Stephen A. Jarvis
Software Mentions: 5
Published: almost 4 years ago

10.1038/srep45651

Patterns in the skin microbiota differ in children and teenagers between rural and urban environments
Cited by: 85
Author(s): Jenni Lehtimäki, Antti Karkman, Tiina Laatikainen, Laura Paalanen, Leena von Hertzen, Tari Haahtela, Ilkka Hanski, Lasse Ruokolainen
Software Mentions: 5
Published: over 7 years ago

10.1186/s12941-020-00408-5

Dysbiosis of urine microbiota in obstructive urinary retention patients revealed by next-generation sequencing
Cited by: 4
Author(s): Shan Jiang, Saisai Lu, Xiaomin Chen, Fengxia Li, Ce Zhu, Yuanyuan Zheng, Xiaobing Wang, Shihao Xu
Software Mentions: 4
Published: almost 4 years ago

10.1186/1471-2105-11-37

Predicting Bevirimat resistance of HIV-1 from genotype
Cited by: 32
Author(s): Dominik Heider, Jens Verheyen, Daniel Hoffmann
Software Mentions: 4
Published: almost 15 years ago

10.3389/fcimb.2020.00433

The Microbiome Composition of a Man's Penis Predicts Incident Bacterial Vaginosis in His Female Sex Partner With High Accuracy
Cited by: 34
Author(s): Supriya D. Mehta, Dan Zhao, Stefan J. Green, Walter Agingu, Fredrick Otieno, Runa Bhaumik, Dulal K. Bhaumik, Robert C. Bailey
Software Mentions: 4
Published: over 4 years ago

10.3390/jcm8101535

Connecting Histopathology Imaging and Proteomics in Kidney Cancer through Machine Learning
Cited by: 30
Author(s): Francisco Azuaje, Sang Yoon Kim, Daniel Hernández, Gunnar Dittmar
Software Mentions: 4
Published: about 5 years ago

10.3389/fcimb.2020.00174

Longitudinal Associations of the Cystic Fibrosis Airway Microbiome and Volatile Metabolites: A Case Study
Cited by: 13
Author(s): Andrea Hahn, Katrine Whiteson, Thomas J. Davis, Joann Phan, Iman Sami, Anastassios C. Koumbourlis, Robert J. Freishtat, Keith A. Crandall, Heather D. Bean
Software Mentions: 4
Published: over 4 years ago

10.1186/s12864-019-6142-y

DNA methylation profiles capturing breast cancer heterogeneity
Cited by: 19
Author(s): Xiao Chen, Jianying Zhang, Xiaofeng Dai
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0132178

What Is a Mild Winter? Regional Differences in Within-Species Responses to Climate Change
Cited by: 105
Author(s): Sebastian Vetter, T. Ruf, Claudia Bieber, Walter Arnold
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0007556

An Eight-Gene Blood Expression Profile Predicts the Response to Infliximab in Rheumatoid Arthritis
Cited by: 92
Author(s): Antonio Julià, Alba Erra, Carles Palacio, Carlos Tomás, Xavier Sans, P Barceló, Sara Marsal
Software Mentions: 4
Published: about 15 years ago

10.1371/journal.pone.0165267

Plasma Metabolites Predict Severity of Depression and Suicidal Ideation in Psychiatric Patients-A Multicenter Pilot Analysis
Cited by: 87
Author(s): Daiki Setoyama, Takahiro A. Kato, Ryota Hashimoto, Hiroshi Kunugi, Kotaro Hattori, Kohei Hayakawa, Mina Sato-Kasai, Norihiro Shimokawa, Sachie Kaneko, Sumiko Yoshida, Yu Ichi Goto, Yuka Yasuda, Hidenaga Yamamori, Masahiro Ohgidani, Noriyuki Sagata, Daisuke Miura, Dongchon Kang, Shigenobu Kanba
Software Mentions: 4
Published: almost 8 years ago

10.3389/fnagi.2021.609043

Ongoing Oscillatory Electrophysiological Alterations in Frail Older Adults: A MEG Study
Cited by: 4
Author(s): Isabel Suárez-Méndez, Stefan Walter, David López‐Sanz, Natalia Pasquín, R. López Bernabé, Ernesto Castillo Gallo, Myriam Valdés, Francisco del Pozo, Fernando Maestú, Leocadio Rodrı́guez-Mañas
Software Mentions: 4
Published: almost 4 years ago

10.3389/fcvm.2021.614204

Development and Validation of a Predictive Model for Coronary Artery Disease Using Machine Learning
Cited by: 7
Author(s): Chen Wang, Yue Zhao, Bingyu Jin, Xuedong Gan, Bin Liang, Yu‐Tao Xiang, Xiaokang Zhang, Zhibing Lu, Fang Zheng
Software Mentions: 4
Published: almost 4 years ago

Projects: cran: randomForest

Papers Mentioning randomForest 1,447