cran: randomForest | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0206153

Device-measured physical activity data for classification of patients with ventricular arrhythmia events: A pilot investigation
Cited by: 9
Author(s): Lucas Marzec, Sridharan Raghavan, Farnoush Banaei-Kashani, Seth A. Creasy, Edward L. Melanson, Leslie A. Lange, Debashis Ghosh, Michael Rosenberg
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0223517

Grouping of complex substances using analytical chemistry data: A framework for quantitative evaluation and visualization
Cited by: 18
Author(s): Melis Onel, Burcu Beykal, Kyle Ferguson, Weihsueh A. Chiu, Thomas J. McDonald, Lan Zhou, John S. House, Fred A. Wright, David A. Sheen, Ivan Rusyn, Efstratios N. Pistikopoulos
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0088645

Metagenomic Analysis of Nitrate-Reducing Bacteria in the Oral Cavity: Implications for Nitric Oxide Homeostasis
Cited by: 161
Author(s): Embriette R. Hyde, Fernando Andrade, Zalman Vaksman, Kavitha Parthasarathy, Hong Jiang, D. Parthasarathy, Ashley C. Torregrossa, Gena D. Tribble, Heidi B. Kaplan, Joseph F. Petrosino, Nathan S. Bryan
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0120106

Potential Biomarkers of Fatigue Identified by Plasma Metabolome Analysis in Rats
Cited by: 39
Author(s): Satoshi Kume, Masayuki Yamato, Yasuhisa Tamura, Guanghua Jin, Masayuki Nakano, Yukiharu Miyashige, Akiyo Eguchi, Yasuhiro Ogata, Nobuhito Goda, Kazuhiro Iwaï, Emi Yamano, Yasuyoshi Watanabe, Tomoyoshi Soga, Yosky Kataoka
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0196225

Quantifying cell densities and biovolumes of phytoplankton communities and functional groups using scanning flow cytometry, machine learning and unsupervised clustering
Cited by: 21
Author(s): Mridul K. Thomas, Simone Fontana, Marta Reyes, Francesco Pomati
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0052168

Inferring Tie Strength from Online Directed Behavior
Cited by: 185
Author(s): Jason Jones, Jaime E. Settle, Robert M. Bond, Christopher J. Fariss, Cameron Marlow, James H. Fowler
Software Mentions: 2
Published: almost 12 years ago

10.1128/mSystems.00181-18

Machine Learning Reveals Missing Edges and Putative Interaction Mechanisms in Microbial Ecosystem Networks
Cited by: 32
Author(s): Demetrius DiMucci, Mark A. Kon, Daniel Segrè
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0068741

Characterization of Vascular Disease Risk in Postmenopausal Women and Its Association with Cognitive Performance
Cited by: 17
Author(s): N. Maritza Dowling, Carey E. Gleason, JoAnn E. Manson, Howard N. Hodis, Virginia M. Miller, Eliot A. Brinton, Genevieve Neal‐Perry, M. Nanette Santoro, Marcelle I. Cedars, Rogerio A. Løbo, George R. Merriam, Whitney Wharton, Frederick Naftolin, Hugh S. Taylor, S. Mitchell Harman, Sanjay Asthana
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0240179

Seeing through the forest: The gaze path to purchase
Cited by: 10
Author(s): Bridget K. Behe, Patricia Huddleston, Kevin L. Childs, Jiaoping Chen, Iago S. Muraro
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0236470

Alterations in the fecal microbiota of patients with spinal cord injury
Cited by: 17
Author(s): Ruizhu Lin, Jianfeng Xu, Qi Ma, Meihua Chen, Lei Wang, Shifeng Wen, Caixia Yang, Chuan Ma, Yue Wang, Qiang Luo, Ning Zhu
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0168365

Do David and Goliath Play the Same Game? Explanation of the Abundance of Rare and Frequent Invasive Alien Plants in Urban Woodlands in Warsaw, Poland
Cited by: 4
Author(s): Artur Obidziński, Piotr Mędrzycki, Ewa Kołaczkowska, Wojciech Ciurzycki, Katarzyna Marciszewska
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0176682

Dynamic species classification of microorganisms across time, abiotic and biotic environments—A sliding window approach
Cited by: 21
Author(s): Frank Pennekamp, Jason I. Griffiths, Emanuel A. Fronhofer, Aurélie Garnier, Mathew Seymour, Florian Altermatt, Owen L. Petchey
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0083922

Combining Machine Learning Systems and Multiple Docking Simulation Packages to Improve Docking Prediction Reliability for Network Pharmacology
Cited by: 222
Author(s): Kun‐Yi Hsin, Samik Ghosh, Hiroaki Kitano
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0207457

Modelling the spatial distribution of three Portunidae crabs in Haizhou Bay, China
Cited by: 17
Author(s): Jing Luan, Chongliang Zhang, Binduo Xu, Ying Xue, Yiping Ren
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0121495

Pre-Analytical Sample Quality: Metabolite Ratios as an Intrinsic Marker for Prolonged Room Temperature Exposure of Serum Samples
Cited by: 85
Author(s): Gabriele Anton, Rory Wilson, Zhonghao Yu, Cornelia Prehn, Sven Zukunft, Jerzy Adamski, Margit Heier, Christa Meisinger, Werner Römisch-Margl, Rui Wang-Sattler, Kristian Hveem, Bruce Wolfenbuttel, Annette Peters, Gabi Kastenmüller, Mélanie Waldenberger
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0201431

Virtual reconstruction of the Upper Palaeolithic skull from Zlatý Kůň, Czech Republic: Sex assessment and morphological affinity
Cited by: 5
Author(s): Rebeka Rmoutilová, Pierre Guyomarc’h, Petr Velemínský, Alena Šefčáková, Mathilde Samsel, Frédéric Santos, Bruno Maureille, Jaroslav Brůžek
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0156578

Can Nocturnal Flight Calls of the Migrating Songbird, American Redstart, Encode Sexual Dimorphism and Individual Identity?
Cited by: 10
Author(s): Emily T. Griffiths, Sara Keen, Michael Lanzone, Andrew Farnsworth
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0073445

Topographical Body Fat Distribution Links to Amino Acid and Lipid Metabolism in Healthy Non-Obese Women
Cited by: 35
Author(s): François-Pierre Martin, Ivan Montoliu, Sebastiano Collino, Max Scherer, Philippe A. Guy, Isabelle Tavazzi, Anita Thorimbert, Sofia Moco, Megan P. Rothney, David L. Ergun, Maurice Beaumont, Fiona Ginty, Salah D. Qanadli, Lucie Favre, Vittorio Giusti, Serge Rezzi
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0081527

ReliefSeq: A Gene-Wise Adaptive-K Nearest-Neighbor Feature Selection Tool for Finding Gene-Gene Interactions and Main Effects in mRNA-Seq Gene Expression Data
Cited by: 28
Author(s): Brett A. McKinney, Bill C. White, Diane E. Grill, Peter W. Li, Richard B. Kennedy, Gregory A. Poland, Ann L. Oberg
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0098707

Adipose Tissue CIDEA Is Associated, Independently of Weight Variation, to Change in Insulin Resistance during a Longitudinal Weight Control Dietary Program in Obese Individuals
Cited by: 10
Author(s): Émilie Montastier, Sébastien Dejean, Caroline Le Gall, Wim H. M. Saris, Dominique Langin, Nathalie Viguerie
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0061709

Winning and Losing Tree Species of Reassembly in Minnesota’s Mixed and Broadleaf Forests
Cited by: 23
Author(s): Brice B. Hanberry, Brian J. Palik, Hong S. He
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0190549

Integrated genetic and epigenetic prediction of coronary heart disease in the Framingham Heart Study
Cited by: 67
Author(s): Meeshanthini V. Dogan, Isabella M. Grumbach, Jacob J. Michaelson, Robert A. Philibert
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0246581

Blood biomarker discovery for autism spectrum disorder: A proteomic analysis
Cited by: 35
Author(s): Laura Hewitson, Jeremy A. Mathews, Morgan Devlin, Claire Schutte, Jeon Lee, Dwight C. German
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0214474

Mapping Europe into local climate zones
Cited by: 109
Author(s): Matthias Demuzere, Benjamin Bechtel, Ariane Middel, Gerald Mills
Software Mentions: 2
Published: over 5 years ago

10.1186/s12967-021-02791-9

Prediction of hepatocellular carcinoma risk in patients with chronic liver disease from dynamic modular networks
Cited by: 1
Author(s): Yinying Chen, Wei Yang, Qilong Chen, Qiong Liu, Jun Liu, Yingying Zhang, Bing Li, Dongfeng Li, Jingyi Nan, Xiaodong Li, Huikun Wu, Xinghua Xiang, Yehui Peng, Jie Wang, Shi‐Bing Su, Wen‐Zhao Zhong
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0081712

Identification of Candidate Serum Proteins for Classifying Well-Differentiated Small Intestinal Neuroendocrine Tumors
Cited by: 17
Author(s): Spyros Darmanis, Cui Tao, Kimi Drobin, Su-Chen Li, Kjell Öberg, Peter Nilsson, Jochen M. Schwenk, Valeria Giandomenico
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0187908

Radiographic prediction of meningioma grade by semantic and radiomic features
Cited by: 102
Author(s): Thibaud Coroller, Wenya Linda Bi, Elizabeth Huynh, Malak Abedalthagafi, Ayal A. Aizer, Noah F. Greenwald, Chintan Parmar, Vivek Narayan, Winona Wu, Samuel Miranda de Moura, Saksham Gupta, Rameen Beroukhim, Patrick Y. Wen, Ossama Al‐Mefty, Ian F. Dunn, Sandro Santagata, Brian M. Alexander, Raymond Y. Huang, Hugo J.W.L. Aerts
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0211324

Geospatial modeling of land cover change in the Chocó-Darien global ecoregion of South America; One of most biodiverse and rainy areas in the world
Cited by: 25
Author(s): J. Camilo Fagua, R. Douglas Ramsey
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0256592

A comparison of prediction approaches for identifying prodromal Parkinson disease
Cited by: 5
Author(s): Mark N. Warden, Susan Nielsen, Alejandra Camacho‐Soto, Roman Garnett, Brad A. Racette
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0029913

Comparative Metaproteomics and Diversity Analysis of Human Intestinal Microbiota Testifies for Its Temporal Stability and Expression of Core Functions
Cited by: 174
Author(s): Carolin A. Kolmeder, Mark de Been, Janne Nikkilä, Ilja Ritamo, Jaana Mättö, Leena Valmu, Jarkko Salojärvi, Airi Palva, Anne Salonen, Willem M. de Vos
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0179473

A Random Forest approach to predict the spatial distribution of sediment pollution in an estuarine system
Cited by: 27
Author(s): Eric S. Walsh, Betty J. Kreakie, Mark G. Cantwell, Diane Nacci
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0237806

Land use and land cover changes along the China-Myanmar Oil and Gas pipelines – Monitoring infrastructure development in remote conflict-prone regions
Cited by: 7
Author(s): Thiri Shwesin Aung, Thomas B. Fischer, John M. Buchanan
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0254538

Predicting performance in 4 x 200-m freestyle swimming relay events
Cited by: 1
Author(s): Paul Wu, Toktam Babaei, Mike O’Shea, Kerrie Mengersen, Christopher Drovandi, Katie E McGibbon, David B. Pyne, Lachlan J G Mitchell, Mark Osborne
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0184382

Plasma sterols and depressive symptom severity in a population-based cohort
Cited by: 10
Author(s): Bercin Kutluk Cenik, Can Cenik, M Snyder, E. Sherwood Brown
Software Mentions: 2
Published: about 7 years ago

10.1186/s12891-021-04403-5

Prevalence and risk factors for bone loss in rheumatoid arthritis patients from South China: modeled by three methods
Cited by: 13
Author(s): Zhuoran Hu, Lei Zhang, Zhiming Lin, Chen Zhao, Shuiming Xu, Lin He, Jiejing Zhang, Wenjie Li, Yongliang Chu
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-01582-x

Forest cover mapping in post-Soviet Central Asia using multi-resolution remote sensing imagery
Cited by: 36
Author(s): He Yin, Asia Khamzina, Dirk Pflugmacher, Christopher Martius
Software Mentions: 1
Published: over 7 years ago

10.3390/ijerph18137160

Mental Health and Traumatization of Newly Arrived Asylum Seeker Adults in Finland: A Population-Based Study
Cited by: 3
Author(s): Ferdinand Garoff, Natalia Skogberg, Antti Klemettilä, Eero Lilja, Awa Ahmed Haji Omar, Olli Snellman, Anu E. Castaneda
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0097236

Determinants of Allergic Rhinitis in Young Children with Asthma
Cited by: 11
Author(s): Lise Moussu, Philippe Saint‐Pierre, Virginie Panayotopoulos, Rémy Couderc, Flore Amat, Jocelyne Just
Software Mentions: 1
Published: over 10 years ago

10.1186/s12866-018-1364-8

Evaluating the profound effect of gut microbiome on host appetite in pigs
Cited by: 38
Author(s): Hui Yang, Ming Yang, Shouguo Fang, Xiaowan Huang, Maozhang He, Shanlin Ke, Jun Gao, Jinyuan Wu, Yunyan Zhou, Hao Fu, Congying Chen, Lusheng Huang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0030126

Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics
Cited by: 593
Author(s): Ian Holmes, Kate Harris, Christopher Quince
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2105-16-S13-S13

A Bayesian approach for inducing sparsity in generalized linear models with multi-category response
Cited by: 2
Author(s): Behrouz Madahian, Sujoy Roy, Dale Bowman, Lih Yuan Deng, Ramin Homayouni
Software Mentions: 1
Published: almost 9 years ago

10.3390/molecules24122210

Attenuated Total Reflection-Fourier Transform Infrared Spectroscopy (ATR-FTIR) Combined with Chemometrics Methods for the Classification of Lingzhi Species
Cited by: 29
Author(s): Yuan‐Yuan Wang, Jieqing Li, Honggao Liu, Yuanzhong Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/2051-3933-2-2

Elephant movement closely tracks precipitation-driven vegetation dynamics in a Kenyan forest-savanna landscape
Cited by: 80
Author(s): Gil Bohrer, Pieter S. A. Beck, Shadrack Ngene, Andrew K. Skidmore, I. Douglas-Hamilton
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2105-9-87

Building pathway clusters from Random Forests classification using class votes
Cited by: 32
Author(s): Herbert Pang, Hongyu Zhao
Software Mentions: 1
Published: almost 17 years ago

10.1186/s12874-021-01369-9

Predicting postoperative surgical site infection with administrative data: a random forests algorithm
Cited by: 8
Author(s): Yelena Petrosyan, Kednapa Thavorn, Geoffrey C. Smith, Malcolm Maclure, Roanne Preston, Carl van Walravan, Alan J. Forster
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0189875

Accurate and fast feature selection workflow for high-dimensional omics data
Cited by: 54
Author(s): Yasset Perez‐Riverol, Max Kühn, Juan Antonio Vizcaíno, Marc‐Phillip Hitz, Enrique Audain
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-08990-z

Lineage structure of Streptococcus pneumoniae may be driven by immune selection on the groEL heat-shock protein
Cited by: 18
Author(s): José Lourenço, Eleanor Watkins, Uri Obolski, Samuel J. Peacock, Callum Morris, Martin C. J. Maiden, Sunetra Gupta
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms22105093

Plasma Metabolomics Analysis of Polyvinyl Chloride Workers Identifies Altered Processes and Candidate Biomarkers for Hepatic Hemangiosarcoma and Its Development
Cited by: 2
Author(s): John Guardiola, Josiah Hardesty, Juliane I. Beier, Russell A. Prough, Craig J. McClain, Matthew C. Cave
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-10203-6

A novel approach for the prediction of species-specific biotransformation of xenobiotic/drug molecules by the human gut microbiota
Cited by: 48
Author(s): Ashok Sharma, Shubham K. Jaiswal, Nikhil Chaudhary, Vineet K. Sharma
Software Mentions: 1
Published: about 7 years ago

10.1186/s40462-021-00248-8

Using tri-axial accelerometer loggers to identify spawning behaviours of large pelagic fish
Cited by: 11
Author(s): Thomas M. Clarke, Sasha K. Whitmarsh, Jenna L. Hounslow, Adrian C. Gleiss, Nicholas L. Payne, Charlie Huveneers
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-12042-x

Profiling of cocaine using ratios of GC-MS peaks
Cited by: 3
Author(s): Palle Villesen, L. Nielsen
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0058583

Predicting where Small Molecules Bind at Protein-Protein Interfaces
Cited by: 11
Author(s): Peter Walter, Jennifer Metzger, Christoph Thiel, Volkhard Helms
Software Mentions: 1
Published: over 11 years ago

10.1186/s12911-020-01354-0

Applying probability calibration to ensemble methods to predict 2-year mortality in patients with DLBCL
Cited by: 4
Author(s): Shuanglong Fan, Zhiqiang Zhao, Hongmei Yu, Lei Wang, Chuchu Zheng, Xueqian Huang, Zhenhuan Yang, Meng Xing, Qing Lu, Yanhong Luo
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-017-14674-5

Glomerulocapillary miRNA response to HLA-class I antibody in vitro and in vivo
Cited by: 7
Author(s): Falko M. Heinemann, Peter T. Jindra, Clemens L. Bockmeyer, Philip Zeuschner, Juliane Wittig, Heike Höflich, Marc Eßer, Mahmoud Abbas, Georg Dieplinger, Katharina Stolle, Udo Vester, Peter F. Hoyer, Stephan Immenschuh, Andreas Heinold, Peter A. Horn, Wentian Li, Ute Eisenberger, Jan U. Becker
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2105-10-427

In silico method for systematic analysis of feature importance in microRNA-mRNA interactions
Cited by: 11
Author(s): Jiamin Xiao, Yizhou Li, Kelong Wang, Zhining Wen, Menglong Li, Lifang Zhang, Xuanmin Guang
Software Mentions: 1
Published: almost 15 years ago

10.3389/fmed.2021.661710

Development of a Nomogram to Predict 28-Day Mortality of Patients With Sepsis-Induced Coagulopathy: An Analysis of the MIMIC-III Database
Cited by: 13
Author(s): Zongqing Lu, Jin Zhang, Jianchao Hong, Jiatian Wu, Yu Liu, Wenyan Xiao, Tianfeng Hua, Min Yang
Software Mentions: 1
Published: over 3 years ago

10.1186/s40462-021-00265-7

Limitations of using surrogates for behaviour classification of accelerometer data: refining methods using random forest models in Caprids
Cited by: 9
Author(s): Eleanor R. Dickinson, Joshua P. Twining, Rory P. Wilson, Philip A. Stephens, Jennie Westander, Nikki J. Marks, David Scantlebury
Software Mentions: 1
Published: over 3 years ago

10.3389/fnint.2020.00007

Metabolic Signatures Differentiate Rett Syndrome From Unaffected Siblings
Cited by: 21
Author(s): Jeffrey L. Neul, Steven A. Skinner, Fran Annese, Jane Lane, Peter Heydemann, Mary Jones, Walter E. Kaufmann, Daniel G. Glaze, Alan K. Percy
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0082306

Modeling the Distribution of Geodia Sponges and Sponge Grounds in the Northwest Atlantic
Cited by: 72
Author(s): Anders Knudby, Ellen Kenchington, F. Javier Murillo
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0153776

Random Forests Are Able to Identify Differences in Clotting Dynamics from Kinetic Models of Thrombin Generation
Cited by: 5
Author(s): Jayavel Arumugam, Satish T. S. Bukkapatnam, Krishna R. Narayanan, Arun R. Srinivasa
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0235608

Community attitudes on genetic research of gender identity, sexual orientation, and mental health
Cited by: 5
Author(s): Taylor Thomas, Dabney Hofammann, Brooke G. McKenna, Anna I. R. van der Miesen, Mark A. Stokes, Peter T. Daniolos, Jacob J. Michaelson
Software Mentions: 1
Published: over 4 years ago

10.1186/s12911-020-01330-8

CERC: an interactive content extraction, recognition, and construction tool for clinical and biomedical text
Cited by: 6
Author(s): Eva K. Lee, Karan Uppal
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0133044

Landscape Analysis of Adult Florida Panther Habitat
Cited by: 19
Author(s): Robert A. Frakes, Robert C. Belden, Barry E. Wood, F. James
Software Mentions: 1
Published: over 9 years ago

10.2196/16213

Comparisons Between Hypothesis- and Data-Driven Approaches for Multimorbidity Frailty Index: A Machine Learning Approach
Cited by: 16
Author(s): Li Ning Peng, Fei‐Yuan Hsiao, Wei‐Ju Lee, Sheng‐Teng Huang, Liang Kung Chen
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2105-13-60

Is EC class predictable from reaction mechanism?
Cited by: 16
Author(s): Neetika Nath, John B. O. Mitchell
Software Mentions: 1
Published: over 12 years ago

10.1186/s12911-021-01461-6

A novel model to label delirium in an intensive care unit from clinician actions
Cited by: 7
Author(s): Caitlin E. Coombes, Kevin R. Coombes, Naleef Fareed
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2017.01430

IL17eScan: A Tool for the Identification of Peptides Inducing IL-17 Response
Cited by: 30
Author(s): Sudheer Gupta, Parul Mittal, Midhun K. Madhu, Vineet K. Sharma
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0201904

On the overestimation of random forest’s out-of-bag error
Cited by: 118
Author(s): Silke Janitza, Roman Hornung
Software Mentions: 1
Published: over 6 years ago

10.1186/1755-8794-7-S3-S1

Predicting host tropism of influenza A virus proteins using random forest
Cited by: 55
Author(s): Christine L. P. Eng, Joo Chuan Tong, Tin Wee Tan
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13567-015-0219-7

What variables are important in predicting bovine viral diarrhea virus? A random forest approach
Cited by: 50
Author(s): Gustavo Machado, Mariana Recamonde‐Mendoza, Luís Gustavo Corbellini
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0160788

Why Are Nigeria-Cameroon Chimpanzees (Pan troglodytes ellioti) Free of SIVcpz Infection?
Cited by: 9
Author(s): Sabrina Locatelli, Ryan J. Harrigan, Paul R. Sesink Clee, MA Mitchell, Kurt A. McKean, Thomas B. Smith, Mary Katherine Gonder
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0175768

Predictive long-range allele-specific mapping of regulatory variants and target transcripts
Cited by: 0
Author(s): Kibaick Lee, Seulkee Lee, Hyoeun Bang, Jung Kyoon Choi
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-31892-7

High abundances of the nuisance raphidophyte Gonyostomum semen in brown water lakes are associated with high concentrations of iron
Cited by: 17
Author(s): Karen Lebret, Örjan Östman, Silke Langenheder, Stina Drakare, François Guillemette, Eva S. Lindström
Software Mentions: 1
Published: about 6 years ago

10.1186/s12937-019-0443-5

Importance of details in food descriptions in estimating population nutrient intake distributions
Cited by: 6
Author(s): Liangzi Zhang, Anouk Geelen, Hendriek C. Boshuizen, José A. Ferreira, Marga C. Ocké
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-12-352

Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams
Cited by: 44
Author(s): Joan Segura, Pamela F. Jones, Narcís Fernández-Fuentes
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2105-10-S1-S65

A random forest approach to the detection of epistatic interactions in case-control studies
Cited by: 230
Author(s): Rui Jiang, Wenjun Tang, Xuebing Wu, Wenhui Fu
Software Mentions: 1
Published: almost 16 years ago

10.1002/1348-9585.12131

Prevalence and associated occupational factors of low back pain among the bank employees in Dhaka City
Cited by: 20
Author(s): Mohammad Ali, Gias U. Ahsan, Ahmed Hossain
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12920-015-0086-0

Integrative analysis of survival-associated gene sets in breast cancer
Cited by: 16
Author(s): Frederick S. Varn, Matthew Ung, Shao Ke Lou, Chao Cheng
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-10-312

Predicting protein-protein binding sites in membrane proteins
Cited by: 34
Author(s): Andrew J. Bordner
Software Mentions: 1
Published: about 15 years ago

10.1186/1755-8794-8-S1-S7

Performance of case-control rare copy number variation annotation in classification of autism
Cited by: 15
Author(s): Worrawat Engchuan, Kiret Dhindsa, Anath C. Lionel, Stephen W. Scherer, Jonathan H. Chan, Daniele Merico
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-018-33962-2

Estimating the effect size of surgery to improve walking in children with cerebral palsy from retrospective observational clinical data
Cited by: 18
Author(s): Apoorva Rajagopal, Łukasz Kidziński, Alec S. McGlaughlin, Jennifer L. Hicks, Scott L. Delp, Michael H. Schwartz
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-35502-4

RNAm5Cfinder: A Web-server for Predicting RNA 5-methylcytosine (m5C) Sites Based on Random Forest
Cited by: 37
Author(s): Jianwei Li, Yan Huang, Xiaoyue Yang, Yiran Zhou, Yuan Zhou
Software Mentions: 1
Published: almost 6 years ago

10.3390/ani11092626

Changes in the Habitat Preference of Crested Ibis (Nipponia nippon) during a Period of Rapid Population Increase
Cited by: 4
Author(s): Liming Ma, Xinhai Li, Tianqing Zhai, Yazu Zhang, Kai Song, Marcel Holyoak, Yue‐Hua Sun
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-018-36934-8

Identifying outbreaks of Porcine Epidemic Diarrhea virus through animal movements and spatial neighborhoods
Cited by: 56
Author(s): Gustavo Machado, Carles Vilalta, Mariana Recamonde‐Mendoza, Cesar Corzo, Montserrat Torremorell, Andrez Perez, Kimberly VanderWaal
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2020.00917

Computational Prediction of Drug Responses in Cancer Cell Lines From Cancer Omics and Detection of Drug Effectiveness Related Methylation Sites
Cited by: 13
Author(s): Yuan Rui, Shilong Chen, Yongcui Wang
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.4603

Predicting <i>Pinus monophylla</i> forest cover in the Baja California Desert by remote sensing
Cited by: 7
Author(s): Jonathan Gabriel Escobar-Flores, Carlos Antonio López-Sánchez, Sarahi Sandoval, Marco Linares, Christian Wehenkel
Software Mentions: 1
Published: over 6 years ago

10.1080/20002297.2020.1782696

Carbon source utilization patterns in dental plaque and microbial responses to sucrose, lactose, and phenylalanine consumption in severe early childhood caries
Cited by: 3
Author(s): Weihua Shi, Jing Tian, Xing He, Guiyan Wang, Qiong Zhou, Man Qin
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0163942

Prediction of Incident Diabetes in the Jackson Heart Study Using High-Dimensional Machine Learning
Cited by: 38
Author(s): Ramon Casanova, Santiago Saldana, Sean L. Simpson, Mary E. Lacy, Angela Subauste, Chad Blackshear, Lynne E. Wagenknecht, Alain G. Bertoni
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-019-40741-0

Soil carbon is a useful surrogate for conservation planning in developing nations
Cited by: 9
Author(s): Pablo Luís Peri, Romina Gisele Lasagno, Guillermo Martínez Pastur, Rachel Atkinson, Evert Thomas, Brenton Ladd
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-40346-7

Identifying genes associated with invasive disease in S. pneumoniae by applying a machine learning approach to whole genome sequence typing data
Cited by: 16
Author(s): Uri Obolski, Andrea Gori, José Lourenço, Craig Thompson, Robin N Thompson, Neil French, Robert S. Heyderman, Sunetra Gupta
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0205805

Follow-up ecological studies for cryptic species discoveries: Decrypting the leopard frogs of the eastern U.S.
Cited by: 4
Author(s): Matthew Schlesinger, Jeremy A. Feinberg, Nathan H. Nazdrowicz, John D. Kleopfer, Jeffrey C. Beane, John F. Bunnell, Joanna Burger, Edward Corey, Kathy Gipe, Jesse W. Jaycox, Erik Kiviat, Jacob E. Kubel, Dennis P. Quinn, Christopher J. Raithel, Peter Scott, Sarah M. Wenner, Erin L. White, Brian Zarate, H. Bradley Shaffer
Software Mentions: 1
Published: about 6 years ago

10.1186/1755-8794-6-S1-S10

Genome-wide prediction and analysis of human tissue-selective genes using microarray expression data
Cited by: 13
Author(s): Shaolei Teng, Jack Yang, Liangjiang Wang
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41598-019-45135-w

Immunologic findings precede rapid lupus flare after transient steroid therapy
Cited by: 12
Author(s): Rufei Lu, Joel M. Guthridge, Hua Chen, Rebecka L. Bourn, Stan Kamp, Melissa E. Munroe, Susan Macwana, Krista Bean, Sudhakar Sridharan, Joan T. Merrill, Judith A. James
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2021.680288

Geographic Variation Did Not Affect the Predictive Power of Salivary Microbiota for Caries in Children With Mixed Dentition
Cited by: 7
Author(s): Shanshan Li, Shi Huang, Yi Guo, Ying Zhang, Lijuan Zhang, Fan Li, Kaixuan Tan, Jie Lu, Zhenggang Chen, Qingyuan Guo, Yongping Tang, Fei Teng, Fang Yang
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2350-12-90

Genome Wide Association Study to predict severe asthma exacerbations in children using random forests classifiers
Cited by: 67
Author(s): Mousheng Xu, Kelan G. Tantisira, Ann Chen Wu, Augusto A. Litonjua, Jen-Hwa Chu, Blanca E. Himes, Amy Damask, Scott T. Weiss
Software Mentions: 1
Published: over 13 years ago

10.1186/s12916-018-1034-6

Hepatitis B in Moroccan-Dutch: a quantitative study into determinants of screening participation
Cited by: 11
Author(s): Nora Hamdiui, Mart L. Stein, Aura Timen, Daniëlle R.M. Timmermans, Albert Wong, Maria van den Muijsenbergh, Jim E. van Steenbergen
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.9066

ECMPride: prediction of human extracellular matrix proteins based on the ideal dataset using hybrid features with domain evidence
Cited by: 3
Author(s): Binghui Liu, Ling Leng, Xuer Sun, Yunfang Wang, Jie Ma, Yunping Zhu
Software Mentions: 1
Published: over 4 years ago

10.1186/s12916-021-02095-1

Intensive lactation among women with recent gestational diabetes significantly alters the early postpartum circulating lipid profile: the SWIFT study
Cited by: 13
Author(s): Ziyi Zhang, Mi Lai, Anthony L. Piro, Stacey Alexeeff, Amina Allalou, Hannes L. Röst, Feihan F. Dai, Michael B. Wheeler, Erica P. Gunderson
Software Mentions: 1
Published: about 3 years ago

10.3389/fcimb.2021.657867

Alterations, Interactions, and Diagnostic Potential of Gut Bacteria and Viruses in Colorectal Cancer
Cited by: 26
Author(s): Renyuan Gao, Yefei Zhu, Cheng Kong, Kai Xia, Hao Li, Yin Zhu, Xiaohui Zhang, Yongqiang Liu, Hui Zhong, Rong Yang, Chunqiu Chen, Nan Qin, Huanlong Qin
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-52279-2

11C-methionine-PET for differentiating recurrent brain tumor from radiation necrosis: radiomics approach with random forest classifier
Cited by: 55
Author(s): Masatoshi Hotta, Ryogo Minamimoto, Koichi Miwa
Software Mentions: 1
Published: about 5 years ago

Projects: cran: randomForest

Papers Mentioning randomForest 1,447