Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0088645

https://doi.org/10.1371/journal.pone.0088645

Metagenomic Analysis of Nitrate-Reducing Bacteria in the Oral Cavity: Implications for Nitric Oxide Homeostasis

Cited by: 161
Author(s): Embriette R. Hyde, Fernando Andrade, Zalman Vaksman, Kavitha Parthasarathy, Hong Jiang, D. Parthasarathy, Ashley C. Torregrossa, Gena D. Tribble, Heidi B. Kaplan, Joseph F. Petrosino, Nathan S. Bryan
Published: over 10 years ago

Software Mentions 2

cran: randomForest

Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447

pypi: MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306